Multiple sequence alignment - TraesCS5A01G512900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G512900 chr5A 100.000 2622 0 0 1 2622 676898736 676896115 0.000000e+00 4843.0
1 TraesCS5A01G512900 chr5A 98.192 1604 28 1 23 1625 429970434 429968831 0.000000e+00 2800.0
2 TraesCS5A01G512900 chr5A 97.572 1606 36 3 20 1624 583624911 583626514 0.000000e+00 2747.0
3 TraesCS5A01G512900 chr5A 95.389 1605 70 4 20 1622 81479631 81481233 0.000000e+00 2551.0
4 TraesCS5A01G512900 chr5A 91.543 1549 125 6 20 1566 112303029 112304573 0.000000e+00 2130.0
5 TraesCS5A01G512900 chr6A 97.949 1609 27 3 20 1626 120118261 120119865 0.000000e+00 2784.0
6 TraesCS5A01G512900 chr2A 97.696 1606 36 1 20 1624 478905041 478906646 0.000000e+00 2760.0
7 TraesCS5A01G512900 chr2D 96.569 1603 53 2 23 1623 190431174 190429572 0.000000e+00 2654.0
8 TraesCS5A01G512900 chr2D 96.414 1478 48 3 23 1499 650974372 650972899 0.000000e+00 2431.0
9 TraesCS5A01G512900 chr1B 92.951 1603 109 4 23 1625 527622554 527620956 0.000000e+00 2331.0
10 TraesCS5A01G512900 chr4D 82.848 653 81 15 1996 2622 497134805 497134158 8.200000e-155 556.0
11 TraesCS5A01G512900 chr4D 92.580 283 19 2 1642 1922 318830811 318831093 3.140000e-109 405.0
12 TraesCS5A01G512900 chr4D 88.000 75 8 1 1912 1986 497134911 497134838 1.290000e-13 87.9
13 TraesCS5A01G512900 chr4D 95.238 42 1 1 2524 2564 29976986 29977027 6.060000e-07 65.8
14 TraesCS5A01G512900 chr1D 92.883 281 19 1 1645 1924 481920949 481920669 8.740000e-110 407.0
15 TraesCS5A01G512900 chr1D 92.226 283 20 2 1642 1922 173295959 173296241 1.460000e-107 399.0
16 TraesCS5A01G512900 chr5D 92.857 280 19 1 1645 1923 383710830 383710551 3.140000e-109 405.0
17 TraesCS5A01G512900 chr7D 92.806 278 18 2 1642 1917 395463957 395464234 4.060000e-108 401.0
18 TraesCS5A01G512900 chr3D 93.091 275 17 2 1645 1917 309507414 309507140 4.060000e-108 401.0
19 TraesCS5A01G512900 chr3D 92.226 283 20 2 1642 1922 163316433 163316715 1.460000e-107 399.0
20 TraesCS5A01G512900 chr4B 91.958 286 21 2 1639 1922 515059077 515059362 1.460000e-107 399.0
21 TraesCS5A01G512900 chr6B 91.096 292 22 4 1642 1931 57326388 57326677 2.450000e-105 392.0
22 TraesCS5A01G512900 chr6B 95.238 42 1 1 2524 2564 151414483 151414524 6.060000e-07 65.8
23 TraesCS5A01G512900 chr1A 76.444 450 64 29 2202 2622 283860236 283860672 3.420000e-49 206.0
24 TraesCS5A01G512900 chr4A 75.446 448 73 21 2202 2622 222567036 222566599 1.600000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G512900 chr5A 676896115 676898736 2621 True 4843.00 4843 100.000 1 2622 1 chr5A.!!$R2 2621
1 TraesCS5A01G512900 chr5A 429968831 429970434 1603 True 2800.00 2800 98.192 23 1625 1 chr5A.!!$R1 1602
2 TraesCS5A01G512900 chr5A 583624911 583626514 1603 False 2747.00 2747 97.572 20 1624 1 chr5A.!!$F3 1604
3 TraesCS5A01G512900 chr5A 81479631 81481233 1602 False 2551.00 2551 95.389 20 1622 1 chr5A.!!$F1 1602
4 TraesCS5A01G512900 chr5A 112303029 112304573 1544 False 2130.00 2130 91.543 20 1566 1 chr5A.!!$F2 1546
5 TraesCS5A01G512900 chr6A 120118261 120119865 1604 False 2784.00 2784 97.949 20 1626 1 chr6A.!!$F1 1606
6 TraesCS5A01G512900 chr2A 478905041 478906646 1605 False 2760.00 2760 97.696 20 1624 1 chr2A.!!$F1 1604
7 TraesCS5A01G512900 chr2D 190429572 190431174 1602 True 2654.00 2654 96.569 23 1623 1 chr2D.!!$R1 1600
8 TraesCS5A01G512900 chr2D 650972899 650974372 1473 True 2431.00 2431 96.414 23 1499 1 chr2D.!!$R2 1476
9 TraesCS5A01G512900 chr1B 527620956 527622554 1598 True 2331.00 2331 92.951 23 1625 1 chr1B.!!$R1 1602
10 TraesCS5A01G512900 chr4D 497134158 497134911 753 True 321.95 556 85.424 1912 2622 2 chr4D.!!$R1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 251 4.080695 GGGGTTAATTCTCTAAGGAACGGT 60.081 45.833 0.0 0.0 0.0 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2072 2100 0.036306 GTTTGGGGTGTCCGATCAGT 59.964 55.0 0.0 0.0 38.76 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.128925 GTAGTCATTGTCTGATGCCTGA 57.871 45.455 0.00 0.00 35.97 3.86
72 74 7.142680 GGTTCCGAGATTTACATTGTTTCAAA 58.857 34.615 0.00 0.00 0.00 2.69
249 251 4.080695 GGGGTTAATTCTCTAAGGAACGGT 60.081 45.833 0.00 0.00 0.00 4.83
842 846 9.349713 GATAATTTGGGTTTGTATGAGGTGATA 57.650 33.333 0.00 0.00 0.00 2.15
1062 1066 0.512952 CCGTGCTATAGCGGCAAATC 59.487 55.000 19.55 3.74 45.83 2.17
1082 1086 3.838565 TCATGTTAAAGCAAACTCCCCA 58.161 40.909 0.00 0.00 0.00 4.96
1229 1234 0.958822 GAAGGTTCATTGTTGGCGGT 59.041 50.000 0.00 0.00 0.00 5.68
1641 1646 3.625649 AAAGATTGGAGAGACTCTGGC 57.374 47.619 10.44 0.00 0.00 4.85
1642 1647 2.548464 AGATTGGAGAGACTCTGGCT 57.452 50.000 10.44 0.00 0.00 4.75
1643 1648 2.387757 AGATTGGAGAGACTCTGGCTC 58.612 52.381 10.44 1.59 0.00 4.70
1644 1649 2.106566 GATTGGAGAGACTCTGGCTCA 58.893 52.381 10.44 0.23 34.85 4.26
1645 1650 1.554836 TTGGAGAGACTCTGGCTCAG 58.445 55.000 10.44 0.00 34.85 3.35
1646 1651 0.701147 TGGAGAGACTCTGGCTCAGA 59.299 55.000 10.44 5.03 38.25 3.27
1647 1652 1.102978 GGAGAGACTCTGGCTCAGAC 58.897 60.000 10.44 0.00 35.39 3.51
1648 1653 1.340991 GGAGAGACTCTGGCTCAGACT 60.341 57.143 10.44 0.00 35.39 3.24
1649 1654 2.092646 GGAGAGACTCTGGCTCAGACTA 60.093 54.545 10.44 0.00 35.39 2.59
1650 1655 3.206150 GAGAGACTCTGGCTCAGACTAG 58.794 54.545 10.44 0.00 35.39 2.57
1651 1656 2.576191 AGAGACTCTGGCTCAGACTAGT 59.424 50.000 3.56 0.00 35.39 2.57
1652 1657 2.943033 GAGACTCTGGCTCAGACTAGTC 59.057 54.545 15.41 15.41 35.39 2.59
1653 1658 2.307392 AGACTCTGGCTCAGACTAGTCA 59.693 50.000 24.44 4.18 36.39 3.41
1654 1659 2.422127 GACTCTGGCTCAGACTAGTCAC 59.578 54.545 24.44 10.58 35.39 3.67
1655 1660 2.224892 ACTCTGGCTCAGACTAGTCACA 60.225 50.000 24.44 13.19 35.39 3.58
1656 1661 2.822561 CTCTGGCTCAGACTAGTCACAA 59.177 50.000 24.44 8.46 35.39 3.33
1657 1662 3.435275 TCTGGCTCAGACTAGTCACAAT 58.565 45.455 24.44 0.76 35.39 2.71
1658 1663 3.194329 TCTGGCTCAGACTAGTCACAATG 59.806 47.826 24.44 13.74 35.39 2.82
1659 1664 2.234661 TGGCTCAGACTAGTCACAATGG 59.765 50.000 24.44 9.12 0.00 3.16
1660 1665 2.497675 GGCTCAGACTAGTCACAATGGA 59.502 50.000 24.44 10.46 0.00 3.41
1661 1666 3.516615 GCTCAGACTAGTCACAATGGAC 58.483 50.000 24.44 6.49 38.08 4.02
1662 1667 3.056536 GCTCAGACTAGTCACAATGGACA 60.057 47.826 24.44 0.00 40.29 4.02
1663 1668 4.742417 CTCAGACTAGTCACAATGGACAG 58.258 47.826 24.44 4.52 40.29 3.51
1664 1669 4.152647 TCAGACTAGTCACAATGGACAGT 58.847 43.478 24.44 0.00 40.29 3.55
1665 1670 4.021981 TCAGACTAGTCACAATGGACAGTG 60.022 45.833 24.44 9.45 40.29 3.66
1666 1671 4.021981 CAGACTAGTCACAATGGACAGTGA 60.022 45.833 24.44 0.00 42.06 3.41
1672 1677 4.615588 TCACAATGGACAGTGACATACA 57.384 40.909 6.77 0.00 39.65 2.29
1693 1698 9.856488 CATACACTAGTAACATACACATATCCC 57.144 37.037 0.00 0.00 33.13 3.85
1694 1699 9.824216 ATACACTAGTAACATACACATATCCCT 57.176 33.333 0.00 0.00 33.13 4.20
1696 1701 9.298250 ACACTAGTAACATACACATATCCCTAG 57.702 37.037 0.00 0.00 0.00 3.02
1697 1702 9.516546 CACTAGTAACATACACATATCCCTAGA 57.483 37.037 0.00 0.00 0.00 2.43
1698 1703 9.517868 ACTAGTAACATACACATATCCCTAGAC 57.482 37.037 0.00 0.00 0.00 2.59
1699 1704 9.742144 CTAGTAACATACACATATCCCTAGACT 57.258 37.037 0.00 0.00 0.00 3.24
1703 1708 8.958060 AACATACACATATCCCTAGACTATGT 57.042 34.615 0.00 0.00 36.72 2.29
1704 1709 8.958060 ACATACACATATCCCTAGACTATGTT 57.042 34.615 8.30 5.15 34.66 2.71
1741 1746 8.548880 AGTGGGTAGTAATATAAGTGTGATGT 57.451 34.615 0.00 0.00 0.00 3.06
1742 1747 8.639761 AGTGGGTAGTAATATAAGTGTGATGTC 58.360 37.037 0.00 0.00 0.00 3.06
1743 1748 8.418662 GTGGGTAGTAATATAAGTGTGATGTCA 58.581 37.037 0.00 0.00 0.00 3.58
1744 1749 9.154632 TGGGTAGTAATATAAGTGTGATGTCAT 57.845 33.333 0.00 0.00 0.00 3.06
1745 1750 9.424319 GGGTAGTAATATAAGTGTGATGTCATG 57.576 37.037 0.00 0.00 0.00 3.07
1746 1751 8.926710 GGTAGTAATATAAGTGTGATGTCATGC 58.073 37.037 0.00 0.00 0.00 4.06
1747 1752 9.476202 GTAGTAATATAAGTGTGATGTCATGCA 57.524 33.333 0.00 0.00 0.00 3.96
1748 1753 8.962884 AGTAATATAAGTGTGATGTCATGCAA 57.037 30.769 0.00 0.00 0.00 4.08
1749 1754 9.394767 AGTAATATAAGTGTGATGTCATGCAAA 57.605 29.630 0.00 0.00 0.00 3.68
1750 1755 9.655769 GTAATATAAGTGTGATGTCATGCAAAG 57.344 33.333 0.00 0.00 0.00 2.77
1751 1756 3.293311 AAGTGTGATGTCATGCAAAGC 57.707 42.857 0.00 0.00 0.00 3.51
1752 1757 2.511659 AGTGTGATGTCATGCAAAGCT 58.488 42.857 0.00 0.00 0.00 3.74
1753 1758 2.889045 AGTGTGATGTCATGCAAAGCTT 59.111 40.909 0.00 0.00 0.00 3.74
1754 1759 3.057736 AGTGTGATGTCATGCAAAGCTTC 60.058 43.478 0.00 0.00 0.00 3.86
1755 1760 2.885894 TGTGATGTCATGCAAAGCTTCA 59.114 40.909 0.00 0.00 0.00 3.02
1756 1761 3.508402 TGTGATGTCATGCAAAGCTTCAT 59.492 39.130 0.00 0.00 0.00 2.57
1757 1762 4.021807 TGTGATGTCATGCAAAGCTTCATT 60.022 37.500 0.00 0.00 0.00 2.57
1758 1763 4.927425 GTGATGTCATGCAAAGCTTCATTT 59.073 37.500 0.00 0.00 0.00 2.32
1759 1764 6.094719 GTGATGTCATGCAAAGCTTCATTTA 58.905 36.000 0.00 0.00 0.00 1.40
1760 1765 6.755141 GTGATGTCATGCAAAGCTTCATTTAT 59.245 34.615 0.00 0.00 0.00 1.40
1761 1766 7.277098 GTGATGTCATGCAAAGCTTCATTTATT 59.723 33.333 0.00 0.00 0.00 1.40
1762 1767 8.468399 TGATGTCATGCAAAGCTTCATTTATTA 58.532 29.630 0.00 0.00 0.00 0.98
1763 1768 8.867112 ATGTCATGCAAAGCTTCATTTATTAG 57.133 30.769 0.00 0.00 0.00 1.73
1764 1769 7.259882 TGTCATGCAAAGCTTCATTTATTAGG 58.740 34.615 0.00 0.00 0.00 2.69
1765 1770 7.093814 TGTCATGCAAAGCTTCATTTATTAGGT 60.094 33.333 0.00 0.00 0.00 3.08
1766 1771 7.761249 GTCATGCAAAGCTTCATTTATTAGGTT 59.239 33.333 0.00 0.00 0.00 3.50
1767 1772 8.965819 TCATGCAAAGCTTCATTTATTAGGTTA 58.034 29.630 0.00 0.00 0.00 2.85
1768 1773 9.754382 CATGCAAAGCTTCATTTATTAGGTTAT 57.246 29.630 0.00 0.00 0.00 1.89
1785 1790 9.896645 ATTAGGTTATAGACTCATATTGCATGG 57.103 33.333 0.00 0.00 0.00 3.66
1786 1791 6.715280 AGGTTATAGACTCATATTGCATGGG 58.285 40.000 0.00 0.00 0.00 4.00
1787 1792 6.501805 AGGTTATAGACTCATATTGCATGGGA 59.498 38.462 0.00 0.00 0.00 4.37
1788 1793 6.595716 GGTTATAGACTCATATTGCATGGGAC 59.404 42.308 0.00 0.00 0.00 4.46
1805 1810 5.491323 TGGGACATGTGATGTTACAGTAA 57.509 39.130 1.15 0.00 45.03 2.24
1806 1811 5.242434 TGGGACATGTGATGTTACAGTAAC 58.758 41.667 15.58 15.58 45.03 2.50
1807 1812 5.012664 TGGGACATGTGATGTTACAGTAACT 59.987 40.000 21.56 9.41 45.03 2.24
1808 1813 6.211785 TGGGACATGTGATGTTACAGTAACTA 59.788 38.462 21.56 10.50 45.03 2.24
1809 1814 6.757010 GGGACATGTGATGTTACAGTAACTAG 59.243 42.308 21.56 8.25 45.03 2.57
1810 1815 6.255887 GGACATGTGATGTTACAGTAACTAGC 59.744 42.308 21.56 12.59 45.03 3.42
1811 1816 6.936279 ACATGTGATGTTACAGTAACTAGCT 58.064 36.000 21.56 6.57 41.63 3.32
1812 1817 8.063200 ACATGTGATGTTACAGTAACTAGCTA 57.937 34.615 21.56 4.25 41.63 3.32
1813 1818 8.528643 ACATGTGATGTTACAGTAACTAGCTAA 58.471 33.333 21.56 3.59 41.63 3.09
1814 1819 9.025020 CATGTGATGTTACAGTAACTAGCTAAG 57.975 37.037 21.56 6.36 39.38 2.18
1815 1820 8.118976 TGTGATGTTACAGTAACTAGCTAAGT 57.881 34.615 21.56 0.00 41.49 2.24
1837 1842 7.457024 AGTTACTCAAACTACCTCTCTCTTC 57.543 40.000 0.00 0.00 46.85 2.87
1838 1843 7.005296 AGTTACTCAAACTACCTCTCTCTTCA 58.995 38.462 0.00 0.00 46.85 3.02
1839 1844 7.672239 AGTTACTCAAACTACCTCTCTCTTCAT 59.328 37.037 0.00 0.00 46.85 2.57
1840 1845 6.926630 ACTCAAACTACCTCTCTCTTCATT 57.073 37.500 0.00 0.00 0.00 2.57
1841 1846 9.529823 TTACTCAAACTACCTCTCTCTTCATTA 57.470 33.333 0.00 0.00 0.00 1.90
1842 1847 8.423906 ACTCAAACTACCTCTCTCTTCATTAA 57.576 34.615 0.00 0.00 0.00 1.40
1843 1848 8.308207 ACTCAAACTACCTCTCTCTTCATTAAC 58.692 37.037 0.00 0.00 0.00 2.01
1844 1849 8.423906 TCAAACTACCTCTCTCTTCATTAACT 57.576 34.615 0.00 0.00 0.00 2.24
1845 1850 8.524487 TCAAACTACCTCTCTCTTCATTAACTC 58.476 37.037 0.00 0.00 0.00 3.01
1846 1851 8.307483 CAAACTACCTCTCTCTTCATTAACTCA 58.693 37.037 0.00 0.00 0.00 3.41
1847 1852 8.602472 AACTACCTCTCTCTTCATTAACTCAT 57.398 34.615 0.00 0.00 0.00 2.90
1848 1853 8.602472 ACTACCTCTCTCTTCATTAACTCATT 57.398 34.615 0.00 0.00 0.00 2.57
1849 1854 8.474025 ACTACCTCTCTCTTCATTAACTCATTG 58.526 37.037 0.00 0.00 0.00 2.82
1850 1855 7.251321 ACCTCTCTCTTCATTAACTCATTGT 57.749 36.000 0.00 0.00 0.00 2.71
1851 1856 7.327214 ACCTCTCTCTTCATTAACTCATTGTC 58.673 38.462 0.00 0.00 0.00 3.18
1852 1857 7.038729 ACCTCTCTCTTCATTAACTCATTGTCA 60.039 37.037 0.00 0.00 0.00 3.58
1853 1858 7.277539 CCTCTCTCTTCATTAACTCATTGTCAC 59.722 40.741 0.00 0.00 0.00 3.67
1854 1859 7.670364 TCTCTCTTCATTAACTCATTGTCACA 58.330 34.615 0.00 0.00 0.00 3.58
1855 1860 7.600375 TCTCTCTTCATTAACTCATTGTCACAC 59.400 37.037 0.00 0.00 0.00 3.82
1856 1861 7.216494 TCTCTTCATTAACTCATTGTCACACA 58.784 34.615 0.00 0.00 0.00 3.72
1857 1862 7.171508 TCTCTTCATTAACTCATTGTCACACAC 59.828 37.037 0.00 0.00 0.00 3.82
1858 1863 5.590104 TCATTAACTCATTGTCACACACG 57.410 39.130 0.00 0.00 0.00 4.49
1859 1864 3.870723 TTAACTCATTGTCACACACGC 57.129 42.857 0.00 0.00 0.00 5.34
1860 1865 1.662517 AACTCATTGTCACACACGCA 58.337 45.000 0.00 0.00 0.00 5.24
1861 1866 1.662517 ACTCATTGTCACACACGCAA 58.337 45.000 0.00 0.00 0.00 4.85
1862 1867 2.013400 ACTCATTGTCACACACGCAAA 58.987 42.857 0.00 0.00 0.00 3.68
1863 1868 2.618241 ACTCATTGTCACACACGCAAAT 59.382 40.909 0.00 0.00 0.00 2.32
1864 1869 3.066621 ACTCATTGTCACACACGCAAATT 59.933 39.130 0.00 0.00 0.00 1.82
1865 1870 4.039151 TCATTGTCACACACGCAAATTT 57.961 36.364 0.00 0.00 0.00 1.82
1866 1871 3.795639 TCATTGTCACACACGCAAATTTG 59.204 39.130 14.03 14.03 0.00 2.32
1867 1872 2.929531 TGTCACACACGCAAATTTGT 57.070 40.000 19.03 0.00 0.00 2.83
1868 1873 3.223423 TGTCACACACGCAAATTTGTT 57.777 38.095 19.03 4.47 0.00 2.83
1869 1874 4.357018 TGTCACACACGCAAATTTGTTA 57.643 36.364 19.03 0.00 0.00 2.41
1870 1875 4.733850 TGTCACACACGCAAATTTGTTAA 58.266 34.783 19.03 0.00 0.00 2.01
1871 1876 4.795795 TGTCACACACGCAAATTTGTTAAG 59.204 37.500 19.03 10.78 0.00 1.85
1872 1877 4.796312 GTCACACACGCAAATTTGTTAAGT 59.204 37.500 19.03 11.35 0.00 2.24
1873 1878 5.287513 GTCACACACGCAAATTTGTTAAGTT 59.712 36.000 19.03 0.00 0.00 2.66
1874 1879 5.287274 TCACACACGCAAATTTGTTAAGTTG 59.713 36.000 19.03 11.23 41.10 3.16
1875 1880 4.564769 ACACACGCAAATTTGTTAAGTTGG 59.435 37.500 19.03 10.49 39.17 3.77
1876 1881 4.800993 CACACGCAAATTTGTTAAGTTGGA 59.199 37.500 19.03 0.00 39.17 3.53
1877 1882 4.801516 ACACGCAAATTTGTTAAGTTGGAC 59.198 37.500 19.03 0.00 39.17 4.02
1878 1883 5.040635 CACGCAAATTTGTTAAGTTGGACT 58.959 37.500 19.03 0.00 39.17 3.85
1879 1884 5.173131 CACGCAAATTTGTTAAGTTGGACTC 59.827 40.000 19.03 0.00 39.17 3.36
1880 1885 4.378616 CGCAAATTTGTTAAGTTGGACTCG 59.621 41.667 19.03 5.93 39.17 4.18
1881 1886 5.516090 GCAAATTTGTTAAGTTGGACTCGA 58.484 37.500 19.03 0.00 39.17 4.04
1882 1887 6.149633 GCAAATTTGTTAAGTTGGACTCGAT 58.850 36.000 19.03 0.00 39.17 3.59
1883 1888 7.302524 GCAAATTTGTTAAGTTGGACTCGATA 58.697 34.615 19.03 0.00 39.17 2.92
1884 1889 7.968405 GCAAATTTGTTAAGTTGGACTCGATAT 59.032 33.333 19.03 0.00 39.17 1.63
1885 1890 9.840427 CAAATTTGTTAAGTTGGACTCGATATT 57.160 29.630 10.15 0.00 36.09 1.28
1888 1893 9.886132 ATTTGTTAAGTTGGACTCGATATTACT 57.114 29.630 0.00 0.00 0.00 2.24
1889 1894 8.697846 TTGTTAAGTTGGACTCGATATTACTG 57.302 34.615 0.00 0.00 0.00 2.74
1890 1895 6.755141 TGTTAAGTTGGACTCGATATTACTGC 59.245 38.462 0.00 0.00 0.00 4.40
1891 1896 5.599999 AAGTTGGACTCGATATTACTGCT 57.400 39.130 0.00 0.00 0.00 4.24
1892 1897 4.938080 AGTTGGACTCGATATTACTGCTG 58.062 43.478 0.00 0.00 0.00 4.41
1893 1898 4.645136 AGTTGGACTCGATATTACTGCTGA 59.355 41.667 0.00 0.00 0.00 4.26
1894 1899 5.127194 AGTTGGACTCGATATTACTGCTGAA 59.873 40.000 0.00 0.00 0.00 3.02
1895 1900 5.188327 TGGACTCGATATTACTGCTGAAG 57.812 43.478 0.00 0.00 0.00 3.02
1896 1901 4.645136 TGGACTCGATATTACTGCTGAAGT 59.355 41.667 0.00 0.00 43.40 3.01
1897 1902 5.127194 TGGACTCGATATTACTGCTGAAGTT 59.873 40.000 0.00 0.00 40.56 2.66
1898 1903 6.320418 TGGACTCGATATTACTGCTGAAGTTA 59.680 38.462 0.00 0.00 40.56 2.24
1899 1904 6.637658 GGACTCGATATTACTGCTGAAGTTAC 59.362 42.308 0.00 0.00 40.56 2.50
1900 1905 7.336161 ACTCGATATTACTGCTGAAGTTACT 57.664 36.000 0.00 0.00 40.56 2.24
1901 1906 7.419204 ACTCGATATTACTGCTGAAGTTACTC 58.581 38.462 0.00 0.00 40.56 2.59
1902 1907 6.736123 TCGATATTACTGCTGAAGTTACTCC 58.264 40.000 0.00 0.00 40.56 3.85
1903 1908 5.921408 CGATATTACTGCTGAAGTTACTCCC 59.079 44.000 0.00 0.00 40.56 4.30
1904 1909 6.461092 CGATATTACTGCTGAAGTTACTCCCA 60.461 42.308 0.00 0.00 40.56 4.37
1905 1910 2.841442 ACTGCTGAAGTTACTCCCAC 57.159 50.000 0.00 0.00 34.57 4.61
1906 1911 2.330216 ACTGCTGAAGTTACTCCCACT 58.670 47.619 0.00 0.00 34.57 4.00
1907 1912 2.037772 ACTGCTGAAGTTACTCCCACTG 59.962 50.000 0.00 0.00 34.57 3.66
1908 1913 2.037772 CTGCTGAAGTTACTCCCACTGT 59.962 50.000 0.00 0.00 0.00 3.55
1909 1914 2.224281 TGCTGAAGTTACTCCCACTGTG 60.224 50.000 0.00 0.00 0.00 3.66
1910 1915 2.872038 GCTGAAGTTACTCCCACTGTGG 60.872 54.545 20.01 20.01 37.25 4.17
1911 1916 1.071699 TGAAGTTACTCCCACTGTGGC 59.928 52.381 21.47 6.54 35.79 5.01
1912 1917 1.348036 GAAGTTACTCCCACTGTGGCT 59.652 52.381 21.47 8.83 35.79 4.75
1913 1918 2.320681 AGTTACTCCCACTGTGGCTA 57.679 50.000 21.47 10.31 35.79 3.93
1914 1919 2.180276 AGTTACTCCCACTGTGGCTAG 58.820 52.381 21.47 20.51 35.79 3.42
1915 1920 1.900486 GTTACTCCCACTGTGGCTAGT 59.100 52.381 26.22 26.22 35.79 2.57
1916 1921 1.848652 TACTCCCACTGTGGCTAGTC 58.151 55.000 26.56 0.00 35.79 2.59
1917 1922 0.115349 ACTCCCACTGTGGCTAGTCT 59.885 55.000 21.47 3.44 35.79 3.24
1918 1923 0.820871 CTCCCACTGTGGCTAGTCTC 59.179 60.000 21.47 0.00 35.79 3.36
1919 1924 0.114364 TCCCACTGTGGCTAGTCTCA 59.886 55.000 21.47 0.00 35.79 3.27
1920 1925 1.198713 CCCACTGTGGCTAGTCTCAT 58.801 55.000 21.47 0.00 35.79 2.90
1921 1926 1.134580 CCCACTGTGGCTAGTCTCATG 60.135 57.143 21.47 0.00 35.79 3.07
1952 1957 1.696097 AAAGACACGCTCCCCACTGT 61.696 55.000 0.00 0.00 0.00 3.55
1953 1958 2.048127 GACACGCTCCCCACTGTC 60.048 66.667 0.00 0.00 0.00 3.51
1956 1961 1.003355 CACGCTCCCCACTGTCATT 60.003 57.895 0.00 0.00 0.00 2.57
1960 1965 1.687612 CTCCCCACTGTCATTGCCT 59.312 57.895 0.00 0.00 0.00 4.75
1967 1972 3.826157 CCCACTGTCATTGCCTAAGAAAA 59.174 43.478 0.00 0.00 0.00 2.29
1972 1977 5.416952 ACTGTCATTGCCTAAGAAAATGAGG 59.583 40.000 0.00 0.00 40.11 3.86
1986 1991 5.771666 AGAAAATGAGGAGAACAAGCAATGA 59.228 36.000 0.00 0.00 0.00 2.57
1993 1998 6.209986 TGAGGAGAACAAGCAATGAATGATTT 59.790 34.615 0.00 0.00 34.87 2.17
1994 1999 7.001099 AGGAGAACAAGCAATGAATGATTTT 57.999 32.000 0.00 0.00 34.87 1.82
2005 2033 9.104965 AGCAATGAATGATTTTCAATACATTGG 57.895 29.630 21.34 12.28 40.70 3.16
2006 2034 8.339714 GCAATGAATGATTTTCAATACATTGGG 58.660 33.333 21.34 9.54 40.70 4.12
2016 2044 9.978336 ATTTTCAATACATTGGGATTTGGAAAT 57.022 25.926 2.26 0.00 38.30 2.17
2038 2066 9.143631 GAAATTCACAAGTAATCCAAATGAAGG 57.856 33.333 0.00 0.00 0.00 3.46
2041 2069 8.421249 TTCACAAGTAATCCAAATGAAGGAAT 57.579 30.769 0.00 0.00 38.93 3.01
2045 2073 9.178758 ACAAGTAATCCAAATGAAGGAATACTC 57.821 33.333 9.65 0.00 46.21 2.59
2049 2077 7.872113 AATCCAAATGAAGGAATACTCTGTC 57.128 36.000 0.00 0.00 38.93 3.51
2061 2089 0.252421 ACTCTGTCAGGGCATCTCCA 60.252 55.000 0.00 0.00 36.21 3.86
2064 2092 0.742281 CTGTCAGGGCATCTCCAACG 60.742 60.000 0.00 0.00 36.21 4.10
2071 2099 1.375908 GCATCTCCAACGCAGTCCA 60.376 57.895 0.00 0.00 45.00 4.02
2072 2100 0.955428 GCATCTCCAACGCAGTCCAA 60.955 55.000 0.00 0.00 45.00 3.53
2074 2102 0.687354 ATCTCCAACGCAGTCCAACT 59.313 50.000 0.00 0.00 45.00 3.16
2091 2119 0.036306 ACTGATCGGACACCCCAAAC 59.964 55.000 9.00 0.00 34.14 2.93
2096 2124 1.524165 CGGACACCCCAAACGTTCA 60.524 57.895 0.00 0.00 34.14 3.18
2098 2126 0.748729 GGACACCCCAAACGTTCACA 60.749 55.000 0.00 0.00 34.14 3.58
2101 2129 0.661020 CACCCCAAACGTTCACAGAC 59.339 55.000 0.00 0.00 0.00 3.51
2111 2139 0.850856 GTTCACAGACACGTTCCGAC 59.149 55.000 0.00 0.00 0.00 4.79
2133 2161 2.928116 GTGTCTACGAACAATGGGTAGC 59.072 50.000 0.00 0.00 34.92 3.58
2149 2177 4.875713 GCGGGGCGGTCATCCAAT 62.876 66.667 0.00 0.00 0.00 3.16
2150 2178 2.591715 CGGGGCGGTCATCCAATC 60.592 66.667 0.00 0.00 0.00 2.67
2158 2186 2.877300 GCGGTCATCCAATCCTATGCAT 60.877 50.000 3.79 3.79 0.00 3.96
2165 2193 5.479027 TCATCCAATCCTATGCATCAAATGG 59.521 40.000 0.19 7.28 0.00 3.16
2169 2197 2.589720 TCCTATGCATCAAATGGCCAG 58.410 47.619 13.05 0.00 0.00 4.85
2171 2199 1.000506 CTATGCATCAAATGGCCAGCC 59.999 52.381 13.05 0.38 0.00 4.85
2182 2210 6.956497 TCAAATGGCCAGCCTATTTTATTTT 58.044 32.000 13.05 0.00 36.94 1.82
2189 2217 7.344352 TGGCCAGCCTATTTTATTTTCTACATT 59.656 33.333 0.00 0.00 36.94 2.71
2190 2218 8.204160 GGCCAGCCTATTTTATTTTCTACATTT 58.796 33.333 0.00 0.00 0.00 2.32
2213 2241 9.822185 ATTTGGAGCATTTAAAATAGTCAATCC 57.178 29.630 0.00 0.00 0.00 3.01
2216 2244 8.686334 TGGAGCATTTAAAATAGTCAATCCTTC 58.314 33.333 0.00 0.00 0.00 3.46
2217 2245 8.686334 GGAGCATTTAAAATAGTCAATCCTTCA 58.314 33.333 0.00 0.00 0.00 3.02
2235 2263 6.484288 TCCTTCATCCATAATCTTGTTGTGT 58.516 36.000 0.00 0.00 0.00 3.72
2249 2277 8.931385 ATCTTGTTGTGTAAATATTCCAATGC 57.069 30.769 0.00 0.00 0.00 3.56
2254 2282 9.330063 TGTTGTGTAAATATTCCAATGCAAAAA 57.670 25.926 0.00 0.00 0.00 1.94
2339 2367 5.995282 TGAACTTCAACTTATTCGGACACAT 59.005 36.000 0.00 0.00 0.00 3.21
2358 2386 2.088950 TCTTTTTAGTTCTCCCCGCG 57.911 50.000 0.00 0.00 0.00 6.46
2381 2431 0.457166 CGCCCACAAATGTGCTCATG 60.457 55.000 8.03 0.00 44.34 3.07
2386 2436 3.571571 CCACAAATGTGCTCATGAGTTG 58.428 45.455 23.38 19.81 44.34 3.16
2394 2444 1.066645 TGCTCATGAGTTGCTCGATGT 60.067 47.619 23.38 0.00 32.35 3.06
2430 2480 9.153721 TGATGCATTTGAATAAAATCCTCAAAC 57.846 29.630 0.00 0.00 40.74 2.93
2436 2489 6.757897 TGAATAAAATCCTCAAACATCGCT 57.242 33.333 0.00 0.00 0.00 4.93
2437 2490 7.857734 TGAATAAAATCCTCAAACATCGCTA 57.142 32.000 0.00 0.00 0.00 4.26
2447 2500 5.294306 CCTCAAACATCGCTAGATTTTGCTA 59.706 40.000 0.00 0.00 36.27 3.49
2453 2506 5.468072 ACATCGCTAGATTTTGCTATGGAAG 59.532 40.000 8.49 0.00 36.90 3.46
2454 2507 4.453819 ATCGCTAGATTTTGCTATGGAAGC 59.546 41.667 0.00 0.00 42.40 3.86
2463 2516 1.009829 GCTATGGAAGCGTTCAGTGG 58.990 55.000 0.00 0.00 42.53 4.00
2487 2540 3.076621 TCACTCATGCGCTCAAATTTCT 58.923 40.909 9.73 0.00 0.00 2.52
2495 2548 4.252878 TGCGCTCAAATTTCTGATAGTGA 58.747 39.130 9.73 0.00 0.00 3.41
2496 2549 4.093408 TGCGCTCAAATTTCTGATAGTGAC 59.907 41.667 9.73 0.00 0.00 3.67
2502 2555 7.582435 TCAAATTTCTGATAGTGACGAACTC 57.418 36.000 0.00 0.00 40.56 3.01
2503 2556 6.590292 TCAAATTTCTGATAGTGACGAACTCC 59.410 38.462 0.00 0.00 40.56 3.85
2506 2559 4.902443 TCTGATAGTGACGAACTCCATC 57.098 45.455 0.00 0.00 40.56 3.51
2509 2562 2.913777 TAGTGACGAACTCCATCACG 57.086 50.000 0.00 0.00 45.97 4.35
2557 2610 1.417517 TCACACAAGCTGTCATCACCT 59.582 47.619 0.00 0.00 0.00 4.00
2560 2613 0.326264 ACAAGCTGTCATCACCTCCC 59.674 55.000 0.00 0.00 0.00 4.30
2563 2616 1.222936 GCTGTCATCACCTCCCCAG 59.777 63.158 0.00 0.00 0.00 4.45
2580 2633 2.562738 CCCAGTGTCTATGGATCGCATA 59.437 50.000 0.00 4.49 40.51 3.14
2589 2642 8.721478 GTGTCTATGGATCGCATATTTTTACAT 58.279 33.333 4.88 0.00 0.00 2.29
2602 2655 8.345565 GCATATTTTTACATCTCCTCGAACAAT 58.654 33.333 0.00 0.00 0.00 2.71
2606 2659 3.057969 ACATCTCCTCGAACAATTGCA 57.942 42.857 5.05 0.00 0.00 4.08
2615 2668 2.159226 TCGAACAATTGCAAAAACGGGT 60.159 40.909 1.71 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.286872 GGACTCAGGCATCAGACAATG 58.713 52.381 0.00 0.00 0.00 2.82
6 7 1.211457 GGGACTCAGGCATCAGACAAT 59.789 52.381 0.00 0.00 0.00 2.71
7 8 0.615331 GGGACTCAGGCATCAGACAA 59.385 55.000 0.00 0.00 0.00 3.18
9 10 0.615331 TTGGGACTCAGGCATCAGAC 59.385 55.000 0.00 0.00 0.00 3.51
10 11 1.361204 TTTGGGACTCAGGCATCAGA 58.639 50.000 0.00 0.00 0.00 3.27
11 12 2.205022 TTTTGGGACTCAGGCATCAG 57.795 50.000 0.00 0.00 0.00 2.90
12 13 2.673775 TTTTTGGGACTCAGGCATCA 57.326 45.000 0.00 0.00 0.00 3.07
249 251 4.116961 CGTTTCCAACTCGCCAGATATAA 58.883 43.478 0.00 0.00 0.00 0.98
291 293 1.130777 TCGGGATCCATGCATCTTCA 58.869 50.000 15.23 0.00 0.00 3.02
842 846 3.821033 GGTCAACAACACAGGCTCTATTT 59.179 43.478 0.00 0.00 0.00 1.40
1062 1066 4.599047 TTGGGGAGTTTGCTTTAACATG 57.401 40.909 0.00 0.00 0.00 3.21
1082 1086 3.610911 CCCTTTCTTACTGATCGCCTTT 58.389 45.455 0.00 0.00 0.00 3.11
1229 1234 1.045407 ACCAGTCAAGTCGCCAACTA 58.955 50.000 0.00 0.00 37.17 2.24
1626 1631 1.076187 TCTGAGCCAGAGTCTCTCCAA 59.924 52.381 0.00 0.00 35.39 3.53
1627 1632 0.701147 TCTGAGCCAGAGTCTCTCCA 59.299 55.000 0.00 0.00 35.39 3.86
1628 1633 1.102978 GTCTGAGCCAGAGTCTCTCC 58.897 60.000 0.00 0.00 41.46 3.71
1629 1634 2.128771 AGTCTGAGCCAGAGTCTCTC 57.871 55.000 0.00 2.55 39.66 3.20
1630 1635 2.576191 ACTAGTCTGAGCCAGAGTCTCT 59.424 50.000 13.72 0.00 42.40 3.10
1631 1636 2.943033 GACTAGTCTGAGCCAGAGTCTC 59.057 54.545 15.91 8.12 42.40 3.36
1632 1637 2.307392 TGACTAGTCTGAGCCAGAGTCT 59.693 50.000 23.01 7.75 42.40 3.24
1633 1638 2.422127 GTGACTAGTCTGAGCCAGAGTC 59.578 54.545 23.01 12.90 42.40 3.36
1634 1639 2.224892 TGTGACTAGTCTGAGCCAGAGT 60.225 50.000 23.01 14.47 44.98 3.24
1635 1640 2.441410 TGTGACTAGTCTGAGCCAGAG 58.559 52.381 23.01 0.00 41.46 3.35
1636 1641 2.586648 TGTGACTAGTCTGAGCCAGA 57.413 50.000 23.01 0.00 38.25 3.86
1637 1642 3.519579 CATTGTGACTAGTCTGAGCCAG 58.480 50.000 23.01 4.52 0.00 4.85
1638 1643 2.234661 CCATTGTGACTAGTCTGAGCCA 59.765 50.000 23.01 9.43 0.00 4.75
1639 1644 2.497675 TCCATTGTGACTAGTCTGAGCC 59.502 50.000 23.01 7.16 0.00 4.70
1640 1645 3.056536 TGTCCATTGTGACTAGTCTGAGC 60.057 47.826 23.01 11.31 36.21 4.26
1641 1646 4.219507 ACTGTCCATTGTGACTAGTCTGAG 59.780 45.833 23.01 9.27 36.21 3.35
1642 1647 4.021981 CACTGTCCATTGTGACTAGTCTGA 60.022 45.833 23.01 9.71 36.38 3.27
1643 1648 4.021981 TCACTGTCCATTGTGACTAGTCTG 60.022 45.833 23.01 12.82 38.15 3.51
1644 1649 4.152647 TCACTGTCCATTGTGACTAGTCT 58.847 43.478 23.01 0.19 38.15 3.24
1645 1650 4.521130 TCACTGTCCATTGTGACTAGTC 57.479 45.455 16.32 16.32 38.15 2.59
1651 1656 4.314961 GTGTATGTCACTGTCCATTGTGA 58.685 43.478 0.00 0.00 43.13 3.58
1652 1657 4.668576 GTGTATGTCACTGTCCATTGTG 57.331 45.455 0.00 0.00 43.13 3.33
1667 1672 9.856488 GGGATATGTGTATGTTACTAGTGTATG 57.144 37.037 5.39 0.00 0.00 2.39
1668 1673 9.824216 AGGGATATGTGTATGTTACTAGTGTAT 57.176 33.333 5.39 0.00 0.00 2.29
1670 1675 9.298250 CTAGGGATATGTGTATGTTACTAGTGT 57.702 37.037 5.39 0.00 0.00 3.55
1671 1676 9.516546 TCTAGGGATATGTGTATGTTACTAGTG 57.483 37.037 5.39 0.00 0.00 2.74
1672 1677 9.517868 GTCTAGGGATATGTGTATGTTACTAGT 57.482 37.037 0.00 0.00 0.00 2.57
1673 1678 9.742144 AGTCTAGGGATATGTGTATGTTACTAG 57.258 37.037 0.00 0.00 0.00 2.57
1678 1683 8.958060 ACATAGTCTAGGGATATGTGTATGTT 57.042 34.615 11.97 0.00 38.40 2.71
1679 1684 8.958060 AACATAGTCTAGGGATATGTGTATGT 57.042 34.615 12.94 0.00 39.46 2.29
1715 1720 9.650714 ACATCACACTTATATTACTACCCACTA 57.349 33.333 0.00 0.00 0.00 2.74
1716 1721 8.548880 ACATCACACTTATATTACTACCCACT 57.451 34.615 0.00 0.00 0.00 4.00
1717 1722 8.418662 TGACATCACACTTATATTACTACCCAC 58.581 37.037 0.00 0.00 0.00 4.61
1718 1723 8.541899 TGACATCACACTTATATTACTACCCA 57.458 34.615 0.00 0.00 0.00 4.51
1719 1724 9.424319 CATGACATCACACTTATATTACTACCC 57.576 37.037 0.00 0.00 0.00 3.69
1720 1725 8.926710 GCATGACATCACACTTATATTACTACC 58.073 37.037 0.00 0.00 0.00 3.18
1721 1726 9.476202 TGCATGACATCACACTTATATTACTAC 57.524 33.333 0.00 0.00 0.00 2.73
1723 1728 8.962884 TTGCATGACATCACACTTATATTACT 57.037 30.769 0.00 0.00 0.00 2.24
1724 1729 9.655769 CTTTGCATGACATCACACTTATATTAC 57.344 33.333 0.00 0.00 0.00 1.89
1725 1730 8.344831 GCTTTGCATGACATCACACTTATATTA 58.655 33.333 0.00 0.00 0.00 0.98
1726 1731 7.067859 AGCTTTGCATGACATCACACTTATATT 59.932 33.333 0.00 0.00 0.00 1.28
1727 1732 6.544931 AGCTTTGCATGACATCACACTTATAT 59.455 34.615 0.00 0.00 0.00 0.86
1728 1733 5.882000 AGCTTTGCATGACATCACACTTATA 59.118 36.000 0.00 0.00 0.00 0.98
1729 1734 4.703575 AGCTTTGCATGACATCACACTTAT 59.296 37.500 0.00 0.00 0.00 1.73
1730 1735 4.074259 AGCTTTGCATGACATCACACTTA 58.926 39.130 0.00 0.00 0.00 2.24
1731 1736 2.889045 AGCTTTGCATGACATCACACTT 59.111 40.909 0.00 0.00 0.00 3.16
1732 1737 2.511659 AGCTTTGCATGACATCACACT 58.488 42.857 0.00 0.00 0.00 3.55
1733 1738 3.240069 GAAGCTTTGCATGACATCACAC 58.760 45.455 0.00 0.00 0.00 3.82
1734 1739 2.885894 TGAAGCTTTGCATGACATCACA 59.114 40.909 0.00 0.00 0.00 3.58
1735 1740 3.564235 TGAAGCTTTGCATGACATCAC 57.436 42.857 0.00 0.00 0.00 3.06
1736 1741 4.794278 AATGAAGCTTTGCATGACATCA 57.206 36.364 0.00 0.00 0.00 3.07
1737 1742 7.766219 AATAAATGAAGCTTTGCATGACATC 57.234 32.000 0.00 0.00 0.00 3.06
1738 1743 7.924412 CCTAATAAATGAAGCTTTGCATGACAT 59.076 33.333 0.00 0.00 0.00 3.06
1739 1744 7.093814 ACCTAATAAATGAAGCTTTGCATGACA 60.094 33.333 0.00 0.00 0.00 3.58
1740 1745 7.260603 ACCTAATAAATGAAGCTTTGCATGAC 58.739 34.615 0.00 0.00 0.00 3.06
1741 1746 7.408756 ACCTAATAAATGAAGCTTTGCATGA 57.591 32.000 0.00 0.00 0.00 3.07
1742 1747 9.754382 ATAACCTAATAAATGAAGCTTTGCATG 57.246 29.630 0.00 0.00 0.00 4.06
1759 1764 9.896645 CCATGCAATATGAGTCTATAACCTAAT 57.103 33.333 0.00 0.00 0.00 1.73
1760 1765 8.321353 CCCATGCAATATGAGTCTATAACCTAA 58.679 37.037 0.00 0.00 0.00 2.69
1761 1766 7.678171 TCCCATGCAATATGAGTCTATAACCTA 59.322 37.037 0.00 0.00 0.00 3.08
1762 1767 6.501805 TCCCATGCAATATGAGTCTATAACCT 59.498 38.462 0.00 0.00 0.00 3.50
1763 1768 6.595716 GTCCCATGCAATATGAGTCTATAACC 59.404 42.308 0.00 0.00 0.00 2.85
1764 1769 7.161404 TGTCCCATGCAATATGAGTCTATAAC 58.839 38.462 0.00 0.00 0.00 1.89
1765 1770 7.315066 TGTCCCATGCAATATGAGTCTATAA 57.685 36.000 0.00 0.00 0.00 0.98
1766 1771 6.933514 TGTCCCATGCAATATGAGTCTATA 57.066 37.500 0.00 0.00 0.00 1.31
1767 1772 5.830799 TGTCCCATGCAATATGAGTCTAT 57.169 39.130 0.00 0.00 0.00 1.98
1768 1773 5.072193 ACATGTCCCATGCAATATGAGTCTA 59.928 40.000 4.19 0.00 0.00 2.59
1769 1774 4.141321 ACATGTCCCATGCAATATGAGTCT 60.141 41.667 4.19 0.00 0.00 3.24
1770 1775 4.023450 CACATGTCCCATGCAATATGAGTC 60.023 45.833 0.00 0.00 0.00 3.36
1771 1776 3.887110 CACATGTCCCATGCAATATGAGT 59.113 43.478 0.00 0.00 0.00 3.41
1772 1777 4.139038 TCACATGTCCCATGCAATATGAG 58.861 43.478 0.00 2.80 0.00 2.90
1773 1778 4.167652 TCACATGTCCCATGCAATATGA 57.832 40.909 0.00 0.00 0.00 2.15
1774 1779 4.279922 ACATCACATGTCCCATGCAATATG 59.720 41.667 0.00 5.88 39.92 1.78
1775 1780 4.476297 ACATCACATGTCCCATGCAATAT 58.524 39.130 0.00 0.00 39.92 1.28
1776 1781 3.900971 ACATCACATGTCCCATGCAATA 58.099 40.909 0.00 0.00 39.92 1.90
1777 1782 2.742348 ACATCACATGTCCCATGCAAT 58.258 42.857 0.00 0.00 39.92 3.56
1778 1783 2.219080 ACATCACATGTCCCATGCAA 57.781 45.000 0.00 0.00 39.92 4.08
1779 1784 2.219080 AACATCACATGTCCCATGCA 57.781 45.000 0.00 0.00 44.07 3.96
1780 1785 3.016031 TGTAACATCACATGTCCCATGC 58.984 45.455 0.00 0.00 44.07 4.06
1781 1786 4.264253 ACTGTAACATCACATGTCCCATG 58.736 43.478 0.00 1.22 44.07 3.66
1782 1787 4.574674 ACTGTAACATCACATGTCCCAT 57.425 40.909 0.00 0.00 44.07 4.00
1783 1788 5.012664 AGTTACTGTAACATCACATGTCCCA 59.987 40.000 27.12 0.00 44.07 4.37
1784 1789 5.488341 AGTTACTGTAACATCACATGTCCC 58.512 41.667 27.12 1.55 44.07 4.46
1785 1790 6.255887 GCTAGTTACTGTAACATCACATGTCC 59.744 42.308 27.12 1.73 44.07 4.02
1786 1791 7.036220 AGCTAGTTACTGTAACATCACATGTC 58.964 38.462 27.12 9.51 44.07 3.06
1788 1793 8.926715 TTAGCTAGTTACTGTAACATCACATG 57.073 34.615 27.12 12.57 41.07 3.21
1789 1794 8.750298 ACTTAGCTAGTTACTGTAACATCACAT 58.250 33.333 27.12 11.85 41.07 3.21
1790 1795 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
1791 1796 8.983307 AACTTAGCTAGTTACTGTAACATCAC 57.017 34.615 27.12 15.70 45.22 3.06
1803 1808 9.525826 AGGTAGTTTGAGTAACTTAGCTAGTTA 57.474 33.333 10.09 10.09 44.73 2.24
1804 1809 8.419922 AGGTAGTTTGAGTAACTTAGCTAGTT 57.580 34.615 11.59 11.59 44.73 2.24
1805 1810 7.889600 AGAGGTAGTTTGAGTAACTTAGCTAGT 59.110 37.037 0.00 0.00 44.73 2.57
1806 1811 8.283699 AGAGGTAGTTTGAGTAACTTAGCTAG 57.716 38.462 0.00 0.00 44.73 3.42
1807 1812 8.108364 AGAGAGGTAGTTTGAGTAACTTAGCTA 58.892 37.037 0.00 0.00 44.73 3.32
1808 1813 6.949463 AGAGAGGTAGTTTGAGTAACTTAGCT 59.051 38.462 0.00 0.00 44.73 3.32
1809 1814 7.121611 AGAGAGAGGTAGTTTGAGTAACTTAGC 59.878 40.741 0.00 0.00 44.73 3.09
1810 1815 8.570068 AGAGAGAGGTAGTTTGAGTAACTTAG 57.430 38.462 0.00 0.00 44.73 2.18
1811 1816 8.937207 AAGAGAGAGGTAGTTTGAGTAACTTA 57.063 34.615 0.00 0.00 44.73 2.24
1812 1817 7.506261 TGAAGAGAGAGGTAGTTTGAGTAACTT 59.494 37.037 0.00 0.00 44.73 2.66
1814 1819 7.216973 TGAAGAGAGAGGTAGTTTGAGTAAC 57.783 40.000 0.00 0.00 36.99 2.50
1815 1820 8.423906 AATGAAGAGAGAGGTAGTTTGAGTAA 57.576 34.615 0.00 0.00 0.00 2.24
1816 1821 9.529823 TTAATGAAGAGAGAGGTAGTTTGAGTA 57.470 33.333 0.00 0.00 0.00 2.59
1817 1822 6.926630 AATGAAGAGAGAGGTAGTTTGAGT 57.073 37.500 0.00 0.00 0.00 3.41
1818 1823 8.527810 AGTTAATGAAGAGAGAGGTAGTTTGAG 58.472 37.037 0.00 0.00 0.00 3.02
1819 1824 8.423906 AGTTAATGAAGAGAGAGGTAGTTTGA 57.576 34.615 0.00 0.00 0.00 2.69
1820 1825 8.307483 TGAGTTAATGAAGAGAGAGGTAGTTTG 58.693 37.037 0.00 0.00 0.00 2.93
1821 1826 8.423906 TGAGTTAATGAAGAGAGAGGTAGTTT 57.576 34.615 0.00 0.00 0.00 2.66
1822 1827 8.602472 ATGAGTTAATGAAGAGAGAGGTAGTT 57.398 34.615 0.00 0.00 0.00 2.24
1823 1828 8.474025 CAATGAGTTAATGAAGAGAGAGGTAGT 58.526 37.037 0.00 0.00 0.00 2.73
1824 1829 8.474025 ACAATGAGTTAATGAAGAGAGAGGTAG 58.526 37.037 0.00 0.00 0.00 3.18
1825 1830 8.367660 ACAATGAGTTAATGAAGAGAGAGGTA 57.632 34.615 0.00 0.00 0.00 3.08
1826 1831 7.038729 TGACAATGAGTTAATGAAGAGAGAGGT 60.039 37.037 0.00 0.00 0.00 3.85
1827 1832 7.277539 GTGACAATGAGTTAATGAAGAGAGAGG 59.722 40.741 0.00 0.00 0.00 3.69
1828 1833 7.816513 TGTGACAATGAGTTAATGAAGAGAGAG 59.183 37.037 0.00 0.00 0.00 3.20
1829 1834 7.600375 GTGTGACAATGAGTTAATGAAGAGAGA 59.400 37.037 0.00 0.00 0.00 3.10
1830 1835 7.386025 TGTGTGACAATGAGTTAATGAAGAGAG 59.614 37.037 0.00 0.00 0.00 3.20
1831 1836 7.171508 GTGTGTGACAATGAGTTAATGAAGAGA 59.828 37.037 0.00 0.00 0.00 3.10
1832 1837 7.293745 GTGTGTGACAATGAGTTAATGAAGAG 58.706 38.462 0.00 0.00 0.00 2.85
1833 1838 6.073819 CGTGTGTGACAATGAGTTAATGAAGA 60.074 38.462 0.00 0.00 0.00 2.87
1834 1839 6.073369 CGTGTGTGACAATGAGTTAATGAAG 58.927 40.000 0.00 0.00 0.00 3.02
1835 1840 5.559991 GCGTGTGTGACAATGAGTTAATGAA 60.560 40.000 0.00 0.00 0.00 2.57
1836 1841 4.084066 GCGTGTGTGACAATGAGTTAATGA 60.084 41.667 0.00 0.00 0.00 2.57
1837 1842 4.151070 GCGTGTGTGACAATGAGTTAATG 58.849 43.478 0.00 0.00 0.00 1.90
1838 1843 3.812609 TGCGTGTGTGACAATGAGTTAAT 59.187 39.130 0.00 0.00 0.00 1.40
1839 1844 3.198872 TGCGTGTGTGACAATGAGTTAA 58.801 40.909 0.00 0.00 0.00 2.01
1840 1845 2.827652 TGCGTGTGTGACAATGAGTTA 58.172 42.857 0.00 0.00 0.00 2.24
1841 1846 1.662517 TGCGTGTGTGACAATGAGTT 58.337 45.000 0.00 0.00 0.00 3.01
1842 1847 1.662517 TTGCGTGTGTGACAATGAGT 58.337 45.000 0.00 0.00 0.00 3.41
1843 1848 2.753989 TTTGCGTGTGTGACAATGAG 57.246 45.000 0.00 0.00 0.00 2.90
1844 1849 3.706802 AATTTGCGTGTGTGACAATGA 57.293 38.095 0.00 0.00 0.00 2.57
1845 1850 3.551082 ACAAATTTGCGTGTGTGACAATG 59.449 39.130 18.12 0.00 0.00 2.82
1846 1851 3.779759 ACAAATTTGCGTGTGTGACAAT 58.220 36.364 18.12 0.00 0.00 2.71
1847 1852 3.223423 ACAAATTTGCGTGTGTGACAA 57.777 38.095 18.12 0.00 0.00 3.18
1848 1853 2.929531 ACAAATTTGCGTGTGTGACA 57.070 40.000 18.12 0.00 0.00 3.58
1849 1854 4.796312 ACTTAACAAATTTGCGTGTGTGAC 59.204 37.500 18.12 0.00 0.00 3.67
1850 1855 4.987832 ACTTAACAAATTTGCGTGTGTGA 58.012 34.783 18.12 0.00 0.00 3.58
1851 1856 5.479735 CAACTTAACAAATTTGCGTGTGTG 58.520 37.500 18.12 6.59 0.00 3.82
1852 1857 4.564769 CCAACTTAACAAATTTGCGTGTGT 59.435 37.500 18.12 8.10 0.00 3.72
1853 1858 4.800993 TCCAACTTAACAAATTTGCGTGTG 59.199 37.500 18.12 8.72 0.00 3.82
1854 1859 4.801516 GTCCAACTTAACAAATTTGCGTGT 59.198 37.500 18.12 9.08 0.00 4.49
1855 1860 5.040635 AGTCCAACTTAACAAATTTGCGTG 58.959 37.500 18.12 8.49 0.00 5.34
1856 1861 5.257082 AGTCCAACTTAACAAATTTGCGT 57.743 34.783 18.12 8.96 0.00 5.24
1857 1862 4.378616 CGAGTCCAACTTAACAAATTTGCG 59.621 41.667 18.12 6.92 0.00 4.85
1858 1863 5.516090 TCGAGTCCAACTTAACAAATTTGC 58.484 37.500 18.12 0.00 0.00 3.68
1859 1864 9.840427 AATATCGAGTCCAACTTAACAAATTTG 57.160 29.630 16.67 16.67 0.00 2.32
1862 1867 9.886132 AGTAATATCGAGTCCAACTTAACAAAT 57.114 29.630 0.00 0.00 0.00 2.32
1863 1868 9.146984 CAGTAATATCGAGTCCAACTTAACAAA 57.853 33.333 0.00 0.00 0.00 2.83
1864 1869 7.277098 GCAGTAATATCGAGTCCAACTTAACAA 59.723 37.037 0.00 0.00 0.00 2.83
1865 1870 6.755141 GCAGTAATATCGAGTCCAACTTAACA 59.245 38.462 0.00 0.00 0.00 2.41
1866 1871 6.979238 AGCAGTAATATCGAGTCCAACTTAAC 59.021 38.462 0.00 0.00 0.00 2.01
1867 1872 6.978659 CAGCAGTAATATCGAGTCCAACTTAA 59.021 38.462 0.00 0.00 0.00 1.85
1868 1873 6.320418 TCAGCAGTAATATCGAGTCCAACTTA 59.680 38.462 0.00 0.00 0.00 2.24
1869 1874 5.127194 TCAGCAGTAATATCGAGTCCAACTT 59.873 40.000 0.00 0.00 0.00 2.66
1870 1875 4.645136 TCAGCAGTAATATCGAGTCCAACT 59.355 41.667 0.00 0.00 0.00 3.16
1871 1876 4.933330 TCAGCAGTAATATCGAGTCCAAC 58.067 43.478 0.00 0.00 0.00 3.77
1872 1877 5.127194 ACTTCAGCAGTAATATCGAGTCCAA 59.873 40.000 0.00 0.00 31.97 3.53
1873 1878 4.645136 ACTTCAGCAGTAATATCGAGTCCA 59.355 41.667 0.00 0.00 31.97 4.02
1874 1879 5.189659 ACTTCAGCAGTAATATCGAGTCC 57.810 43.478 0.00 0.00 31.97 3.85
1875 1880 7.419204 AGTAACTTCAGCAGTAATATCGAGTC 58.581 38.462 0.00 0.00 32.94 3.36
1876 1881 7.336161 AGTAACTTCAGCAGTAATATCGAGT 57.664 36.000 0.00 0.00 32.94 4.18
1877 1882 6.858993 GGAGTAACTTCAGCAGTAATATCGAG 59.141 42.308 0.00 0.00 32.94 4.04
1878 1883 6.238953 GGGAGTAACTTCAGCAGTAATATCGA 60.239 42.308 0.00 0.00 32.94 3.59
1879 1884 5.921408 GGGAGTAACTTCAGCAGTAATATCG 59.079 44.000 0.00 0.00 32.94 2.92
1880 1885 6.702282 GTGGGAGTAACTTCAGCAGTAATATC 59.298 42.308 0.00 0.00 32.94 1.63
1881 1886 6.384305 AGTGGGAGTAACTTCAGCAGTAATAT 59.616 38.462 0.00 0.00 32.94 1.28
1882 1887 5.720041 AGTGGGAGTAACTTCAGCAGTAATA 59.280 40.000 0.00 0.00 32.94 0.98
1883 1888 4.532521 AGTGGGAGTAACTTCAGCAGTAAT 59.467 41.667 0.00 0.00 32.94 1.89
1884 1889 3.901844 AGTGGGAGTAACTTCAGCAGTAA 59.098 43.478 0.00 0.00 32.94 2.24
1885 1890 3.258372 CAGTGGGAGTAACTTCAGCAGTA 59.742 47.826 0.00 0.00 32.94 2.74
1886 1891 2.037772 CAGTGGGAGTAACTTCAGCAGT 59.962 50.000 0.00 0.00 37.30 4.40
1887 1892 2.037772 ACAGTGGGAGTAACTTCAGCAG 59.962 50.000 0.00 0.00 0.00 4.24
1888 1893 2.047061 ACAGTGGGAGTAACTTCAGCA 58.953 47.619 0.00 0.00 0.00 4.41
1889 1894 2.417719 CACAGTGGGAGTAACTTCAGC 58.582 52.381 0.00 0.00 0.00 4.26
1890 1895 2.872038 GCCACAGTGGGAGTAACTTCAG 60.872 54.545 21.77 0.00 38.19 3.02
1891 1896 1.071699 GCCACAGTGGGAGTAACTTCA 59.928 52.381 21.77 0.00 38.19 3.02
1892 1897 1.348036 AGCCACAGTGGGAGTAACTTC 59.652 52.381 21.77 0.78 38.19 3.01
1893 1898 1.435256 AGCCACAGTGGGAGTAACTT 58.565 50.000 21.77 0.00 38.19 2.66
1894 1899 2.180276 CTAGCCACAGTGGGAGTAACT 58.820 52.381 21.77 10.69 38.19 2.24
1895 1900 1.900486 ACTAGCCACAGTGGGAGTAAC 59.100 52.381 21.77 3.06 38.19 2.50
1896 1901 2.176889 GACTAGCCACAGTGGGAGTAA 58.823 52.381 21.77 0.00 38.19 2.24
1897 1902 1.358103 AGACTAGCCACAGTGGGAGTA 59.642 52.381 21.77 0.00 38.19 2.59
1898 1903 0.115349 AGACTAGCCACAGTGGGAGT 59.885 55.000 21.77 2.87 38.19 3.85
1899 1904 0.820871 GAGACTAGCCACAGTGGGAG 59.179 60.000 21.77 0.00 38.19 4.30
1900 1905 0.114364 TGAGACTAGCCACAGTGGGA 59.886 55.000 21.77 0.00 38.19 4.37
1901 1906 1.134580 CATGAGACTAGCCACAGTGGG 60.135 57.143 21.77 7.25 38.19 4.61
1902 1907 1.134580 CCATGAGACTAGCCACAGTGG 60.135 57.143 16.16 16.16 41.55 4.00
1903 1908 1.827344 TCCATGAGACTAGCCACAGTG 59.173 52.381 0.00 0.00 0.00 3.66
1904 1909 2.106566 CTCCATGAGACTAGCCACAGT 58.893 52.381 0.00 0.00 0.00 3.55
1905 1910 1.202510 GCTCCATGAGACTAGCCACAG 60.203 57.143 0.00 0.00 0.00 3.66
1906 1911 0.826715 GCTCCATGAGACTAGCCACA 59.173 55.000 0.00 0.00 0.00 4.17
1907 1912 0.826715 TGCTCCATGAGACTAGCCAC 59.173 55.000 0.00 0.00 33.99 5.01
1908 1913 1.415289 CATGCTCCATGAGACTAGCCA 59.585 52.381 0.00 0.00 43.81 4.75
1909 1914 1.877258 GCATGCTCCATGAGACTAGCC 60.877 57.143 11.37 0.00 43.81 3.93
1910 1915 1.510776 GCATGCTCCATGAGACTAGC 58.489 55.000 11.37 0.00 43.81 3.42
1911 1916 1.693062 AGGCATGCTCCATGAGACTAG 59.307 52.381 18.92 0.00 43.81 2.57
1912 1917 1.415289 CAGGCATGCTCCATGAGACTA 59.585 52.381 18.92 0.00 43.81 2.59
1913 1918 0.180642 CAGGCATGCTCCATGAGACT 59.819 55.000 18.92 0.00 43.81 3.24
1914 1919 0.179702 TCAGGCATGCTCCATGAGAC 59.820 55.000 18.92 0.00 43.81 3.36
1915 1920 0.913924 TTCAGGCATGCTCCATGAGA 59.086 50.000 18.92 2.66 43.81 3.27
1916 1921 1.676529 CTTTCAGGCATGCTCCATGAG 59.323 52.381 18.92 5.47 43.81 2.90
1917 1922 1.282738 TCTTTCAGGCATGCTCCATGA 59.717 47.619 18.92 13.61 43.81 3.07
1918 1923 1.404391 GTCTTTCAGGCATGCTCCATG 59.596 52.381 18.92 11.51 43.91 3.66
1919 1924 1.005097 TGTCTTTCAGGCATGCTCCAT 59.995 47.619 18.92 0.00 0.00 3.41
1920 1925 0.401356 TGTCTTTCAGGCATGCTCCA 59.599 50.000 18.92 0.00 0.00 3.86
1921 1926 0.807496 GTGTCTTTCAGGCATGCTCC 59.193 55.000 18.92 1.03 29.73 4.70
1952 1957 6.065976 TCTCCTCATTTTCTTAGGCAATGA 57.934 37.500 6.75 6.75 35.93 2.57
1953 1958 6.151648 TGTTCTCCTCATTTTCTTAGGCAATG 59.848 38.462 0.00 0.00 0.00 2.82
1956 1961 5.241403 TGTTCTCCTCATTTTCTTAGGCA 57.759 39.130 0.00 0.00 0.00 4.75
1960 1965 7.448161 TCATTGCTTGTTCTCCTCATTTTCTTA 59.552 33.333 0.00 0.00 0.00 2.10
1967 1972 5.258841 TCATTCATTGCTTGTTCTCCTCAT 58.741 37.500 0.00 0.00 0.00 2.90
1972 1977 7.878477 TGAAAATCATTCATTGCTTGTTCTC 57.122 32.000 0.00 0.00 0.00 2.87
1986 1991 9.398538 CCAAATCCCAATGTATTGAAAATCATT 57.601 29.630 6.18 0.00 40.14 2.57
1993 1998 8.600668 TGAATTTCCAAATCCCAATGTATTGAA 58.399 29.630 6.18 0.00 40.14 2.69
1994 1999 8.040132 GTGAATTTCCAAATCCCAATGTATTGA 58.960 33.333 6.18 0.00 40.14 2.57
2005 2033 7.610865 TGGATTACTTGTGAATTTCCAAATCC 58.389 34.615 14.86 14.86 30.97 3.01
2006 2034 9.487790 TTTGGATTACTTGTGAATTTCCAAATC 57.512 29.630 9.92 3.34 39.05 2.17
2016 2044 7.831691 TTCCTTCATTTGGATTACTTGTGAA 57.168 32.000 0.00 0.00 33.09 3.18
2038 2066 3.244044 GGAGATGCCCTGACAGAGTATTC 60.244 52.174 3.32 0.00 0.00 1.75
2041 2069 1.007118 TGGAGATGCCCTGACAGAGTA 59.993 52.381 3.32 0.00 34.97 2.59
2045 2073 0.742281 CGTTGGAGATGCCCTGACAG 60.742 60.000 0.00 0.00 34.97 3.51
2049 2077 2.046023 TGCGTTGGAGATGCCCTG 60.046 61.111 0.00 0.00 39.64 4.45
2061 2089 0.670546 CCGATCAGTTGGACTGCGTT 60.671 55.000 3.26 0.00 45.54 4.84
2071 2099 0.768622 TTTGGGGTGTCCGATCAGTT 59.231 50.000 0.00 0.00 38.76 3.16
2072 2100 0.036306 GTTTGGGGTGTCCGATCAGT 59.964 55.000 0.00 0.00 38.76 3.41
2074 2102 1.004320 CGTTTGGGGTGTCCGATCA 60.004 57.895 0.00 0.00 38.76 2.92
2118 2146 1.078708 CCCGCTACCCATTGTTCGT 60.079 57.895 0.00 0.00 0.00 3.85
2120 2148 2.119029 GCCCCGCTACCCATTGTTC 61.119 63.158 0.00 0.00 0.00 3.18
2133 2161 2.591715 GATTGGATGACCGCCCCG 60.592 66.667 0.00 0.00 39.42 5.73
2148 2176 3.162666 CTGGCCATTTGATGCATAGGAT 58.837 45.455 5.51 0.00 0.00 3.24
2149 2177 2.589720 CTGGCCATTTGATGCATAGGA 58.410 47.619 5.51 0.00 0.00 2.94
2150 2178 1.000506 GCTGGCCATTTGATGCATAGG 59.999 52.381 5.51 0.00 0.00 2.57
2158 2186 6.558488 AAATAAAATAGGCTGGCCATTTGA 57.442 33.333 5.51 10.55 38.92 2.69
2165 2193 9.034544 CAAATGTAGAAAATAAAATAGGCTGGC 57.965 33.333 0.00 0.00 0.00 4.85
2169 2197 9.249457 GCTCCAAATGTAGAAAATAAAATAGGC 57.751 33.333 0.00 0.00 0.00 3.93
2189 2217 8.593945 AGGATTGACTATTTTAAATGCTCCAA 57.406 30.769 0.00 0.91 0.00 3.53
2190 2218 8.593945 AAGGATTGACTATTTTAAATGCTCCA 57.406 30.769 0.00 0.00 30.55 3.86
2206 2234 7.814264 ACAAGATTATGGATGAAGGATTGAC 57.186 36.000 0.00 0.00 0.00 3.18
2208 2236 7.919091 CACAACAAGATTATGGATGAAGGATTG 59.081 37.037 0.00 0.00 0.00 2.67
2226 2254 8.531622 TTGCATTGGAATATTTACACAACAAG 57.468 30.769 0.00 0.00 0.00 3.16
2309 2337 8.690840 GTCCGAATAAGTTGAAGTTCAAATTTG 58.309 33.333 29.67 21.95 41.17 2.32
2310 2338 8.410141 TGTCCGAATAAGTTGAAGTTCAAATTT 58.590 29.630 29.67 22.44 41.17 1.82
2339 2367 1.619827 TCGCGGGGAGAACTAAAAAGA 59.380 47.619 6.13 0.00 0.00 2.52
2358 2386 1.734117 GCACATTTGTGGGCGCTTC 60.734 57.895 7.64 0.02 45.72 3.86
2373 2401 1.326852 CATCGAGCAACTCATGAGCAC 59.673 52.381 22.83 11.95 0.00 4.40
2402 2452 9.893634 TTGAGGATTTTATTCAAATGCATCAAT 57.106 25.926 0.00 1.68 43.87 2.57
2430 2480 5.924786 CTTCCATAGCAAAATCTAGCGATG 58.075 41.667 0.00 0.00 41.56 3.84
2447 2500 0.620556 ATCCCACTGAACGCTTCCAT 59.379 50.000 0.00 0.00 0.00 3.41
2460 2513 1.153289 AGCGCATGAGTGATCCCAC 60.153 57.895 11.47 0.00 43.50 4.61
2463 2516 1.372582 TTTGAGCGCATGAGTGATCC 58.627 50.000 11.47 0.00 39.82 3.36
2470 2523 4.877823 ACTATCAGAAATTTGAGCGCATGA 59.122 37.500 11.47 0.00 0.00 3.07
2495 2548 0.532573 ATGAGCGTGATGGAGTTCGT 59.467 50.000 0.00 0.00 0.00 3.85
2496 2549 1.203928 GATGAGCGTGATGGAGTTCG 58.796 55.000 0.00 0.00 0.00 3.95
2509 2562 1.081892 AACATGCACAGACGATGAGC 58.918 50.000 0.00 7.58 44.84 4.26
2535 2588 2.816087 GGTGATGACAGCTTGTGTGATT 59.184 45.455 0.00 0.00 40.56 2.57
2557 2610 1.704641 CGATCCATAGACACTGGGGA 58.295 55.000 0.00 0.00 34.36 4.81
2560 2613 2.827800 ATGCGATCCATAGACACTGG 57.172 50.000 0.00 0.00 34.93 4.00
2563 2616 8.083462 TGTAAAAATATGCGATCCATAGACAC 57.917 34.615 9.02 4.81 39.65 3.67
2580 2633 7.029563 GCAATTGTTCGAGGAGATGTAAAAAT 58.970 34.615 7.40 0.00 0.00 1.82
2589 2642 4.606961 GTTTTTGCAATTGTTCGAGGAGA 58.393 39.130 7.40 0.00 0.00 3.71
2602 2655 2.301577 CTCCAAACCCGTTTTTGCAA 57.698 45.000 0.00 0.00 35.48 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.