Multiple sequence alignment - TraesCS5A01G512400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G512400 chr5A 100.000 4444 0 0 1 4444 676589965 676594408 0.000000e+00 8207.0
1 TraesCS5A01G512400 chr5A 91.741 448 33 4 4000 4444 561535475 561535921 1.760000e-173 619.0
2 TraesCS5A01G512400 chr5A 90.249 441 41 2 4006 4444 382552758 382553198 3.860000e-160 575.0
3 TraesCS5A01G512400 chr5A 88.966 145 16 0 3810 3954 689253232 689253376 3.530000e-41 180.0
4 TraesCS5A01G512400 chr4D 95.518 3079 114 12 652 3718 497028631 497031697 0.000000e+00 4900.0
5 TraesCS5A01G512400 chr4D 82.991 341 38 13 1 322 497027883 497028222 1.560000e-74 291.0
6 TraesCS5A01G512400 chr4D 90.355 197 8 7 3529 3718 497031774 497031966 9.550000e-62 248.0
7 TraesCS5A01G512400 chr4D 88.966 145 16 0 3810 3954 386832998 386833142 3.530000e-41 180.0
8 TraesCS5A01G512400 chr4B 94.343 3005 141 15 739 3718 637385791 637388791 0.000000e+00 4580.0
9 TraesCS5A01G512400 chr4B 91.629 442 34 3 4006 4444 217076687 217077128 3.800000e-170 608.0
10 TraesCS5A01G512400 chr4B 90.930 441 37 3 4006 4444 347543645 347543206 1.380000e-164 590.0
11 TraesCS5A01G512400 chr4B 89.462 446 43 4 4003 4444 347540349 347540794 1.080000e-155 560.0
12 TraesCS5A01G512400 chr5D 90.377 478 35 6 3976 4443 9028606 9028130 6.320000e-173 617.0
13 TraesCS5A01G512400 chr5D 92.593 54 3 1 3717 3770 9028658 9028606 4.770000e-10 76.8
14 TraesCS5A01G512400 chr7A 91.855 442 33 3 4006 4444 46688222 46687781 8.170000e-172 614.0
15 TraesCS5A01G512400 chr7A 93.793 145 8 1 3810 3954 287253532 287253675 2.690000e-52 217.0
16 TraesCS5A01G512400 chr7A 88.966 145 16 0 3810 3954 565750369 565750513 3.530000e-41 180.0
17 TraesCS5A01G512400 chr7A 74.803 254 47 10 1 250 590669402 590669162 1.020000e-16 99.0
18 TraesCS5A01G512400 chr6D 90.541 444 36 5 4006 4444 108767846 108767404 2.300000e-162 582.0
19 TraesCS5A01G512400 chr6D 88.966 145 16 0 3810 3954 408219827 408219971 3.530000e-41 180.0
20 TraesCS5A01G512400 chr3B 89.910 446 41 4 4003 4444 545178024 545178469 4.990000e-159 571.0
21 TraesCS5A01G512400 chr6A 97.931 145 3 0 3810 3954 594749852 594749708 7.380000e-63 252.0
22 TraesCS5A01G512400 chr6A 88.966 145 16 0 3810 3954 550731865 550732009 3.530000e-41 180.0
23 TraesCS5A01G512400 chr5B 88.966 145 16 0 3810 3954 234875994 234875850 3.530000e-41 180.0
24 TraesCS5A01G512400 chr1B 88.966 145 16 0 3810 3954 144729958 144729814 3.530000e-41 180.0
25 TraesCS5A01G512400 chr1B 97.222 36 1 0 45 80 305282288 305282253 1.330000e-05 62.1
26 TraesCS5A01G512400 chr3D 81.865 193 35 0 114 306 456652279 456652087 3.560000e-36 163.0
27 TraesCS5A01G512400 chr2D 88.462 78 6 3 148 224 520642652 520642727 1.700000e-14 91.6
28 TraesCS5A01G512400 chr7D 100.000 34 0 0 45 78 528629918 528629951 3.710000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G512400 chr5A 676589965 676594408 4443 False 8207.0 8207 100.000000 1 4444 1 chr5A.!!$F3 4443
1 TraesCS5A01G512400 chr4D 497027883 497031966 4083 False 1813.0 4900 89.621333 1 3718 3 chr4D.!!$F2 3717
2 TraesCS5A01G512400 chr4B 637385791 637388791 3000 False 4580.0 4580 94.343000 739 3718 1 chr4B.!!$F3 2979
3 TraesCS5A01G512400 chr5D 9028130 9028658 528 True 346.9 617 91.485000 3717 4443 2 chr5D.!!$R1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 860 0.036105 ATCGCACACAAGCATCAGGA 60.036 50.0 0.00 0.00 0.0 3.86 F
838 1128 0.468214 CTGACTGGATCCGAGGCCTA 60.468 60.0 4.42 0.00 0.0 3.93 F
984 1279 0.912006 GGAGCTGAGAGGGGAAAGGT 60.912 60.0 0.00 0.00 0.0 3.50 F
2564 2873 0.322816 AGCACTATGGCCCAACTGTG 60.323 55.0 0.00 8.99 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1582 1887 0.103208 CCTTTGAGGCTACGATCGCT 59.897 55.0 16.60 3.50 0.00 4.93 R
2204 2513 0.242017 GTGATGGCAACCAGAAGCAC 59.758 55.0 0.00 0.00 36.75 4.40 R
2921 3230 0.250234 TGAAATGCTCCCAGTCTCCG 59.750 55.0 0.00 0.00 0.00 4.63 R
3826 4148 0.035317 ACTGTCGTGCACACATCCAT 59.965 50.0 18.64 4.27 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.032681 AGCCGCCAGACAAGGTTC 59.967 61.111 0.00 0.00 0.00 3.62
43 44 1.750682 GCCAGACAAGGTTCTTGTGGT 60.751 52.381 16.70 2.90 31.96 4.16
58 59 4.144703 GGTCCTCCGACGCCCTTC 62.145 72.222 0.00 0.00 40.17 3.46
59 60 4.144703 GTCCTCCGACGCCCTTCC 62.145 72.222 0.00 0.00 0.00 3.46
78 79 3.691342 CCGCTGGAGGGACGACAA 61.691 66.667 0.00 0.00 0.00 3.18
79 80 2.432628 CGCTGGAGGGACGACAAC 60.433 66.667 0.00 0.00 0.00 3.32
80 81 2.432628 GCTGGAGGGACGACAACG 60.433 66.667 0.00 0.00 45.75 4.10
82 83 1.890894 CTGGAGGGACGACAACGAT 59.109 57.895 0.00 0.00 42.66 3.73
87 100 1.210931 GGGACGACAACGATGACGA 59.789 57.895 22.16 0.00 45.45 4.20
89 102 0.386352 GGACGACAACGATGACGACA 60.386 55.000 22.16 0.00 45.45 4.35
90 103 0.975544 GACGACAACGATGACGACAG 59.024 55.000 22.16 0.00 45.45 3.51
118 131 1.007964 CGCAGGATAGAGCTGGTCG 60.008 63.158 0.00 0.00 0.00 4.79
121 134 0.671251 CAGGATAGAGCTGGTCGTCC 59.329 60.000 19.75 19.75 35.92 4.79
122 135 0.820074 AGGATAGAGCTGGTCGTCCG 60.820 60.000 20.57 0.00 38.92 4.79
123 136 1.655329 GATAGAGCTGGTCGTCCGG 59.345 63.158 2.81 2.81 42.72 5.14
125 138 0.182061 ATAGAGCTGGTCGTCCGGTA 59.818 55.000 9.33 0.00 41.89 4.02
135 154 3.766591 TGGTCGTCCGGTATAGGTTTTAA 59.233 43.478 0.00 0.00 36.30 1.52
138 157 5.410924 GTCGTCCGGTATAGGTTTTAAGTT 58.589 41.667 0.00 0.00 0.00 2.66
247 266 3.696898 TGAATTTCGTCCGGTTTGTTTG 58.303 40.909 0.00 0.00 0.00 2.93
264 283 7.361628 GGTTTGTTTGAACCATGTTTGAAATGT 60.362 33.333 2.08 0.00 46.66 2.71
268 287 7.042187 TGTTTGAACCATGTTTGAAATGTATGC 60.042 33.333 0.00 0.00 0.00 3.14
271 290 3.761218 ACCATGTTTGAAATGTATGCGGA 59.239 39.130 0.00 0.00 0.00 5.54
272 291 4.402155 ACCATGTTTGAAATGTATGCGGAT 59.598 37.500 0.00 0.00 0.00 4.18
274 293 6.265196 ACCATGTTTGAAATGTATGCGGATAT 59.735 34.615 0.00 0.00 0.00 1.63
280 299 5.293560 TGAAATGTATGCGGATATCGTTGA 58.706 37.500 0.00 0.00 41.72 3.18
284 303 4.627058 TGTATGCGGATATCGTTGAATGT 58.373 39.130 0.00 0.00 41.72 2.71
304 323 2.202756 GTCTCCCGCATCCGTGTC 60.203 66.667 0.00 0.00 0.00 3.67
309 328 2.182284 CCGCATCCGTGTCCGTAA 59.818 61.111 0.00 0.00 0.00 3.18
317 336 0.316204 CCGTGTCCGTAAACTGGTCT 59.684 55.000 0.00 0.00 0.00 3.85
322 341 2.232941 TGTCCGTAAACTGGTCTCATCC 59.767 50.000 0.00 0.00 0.00 3.51
323 342 2.232941 GTCCGTAAACTGGTCTCATCCA 59.767 50.000 0.00 0.00 36.00 3.41
325 344 3.132289 TCCGTAAACTGGTCTCATCCATC 59.868 47.826 0.00 0.00 36.84 3.51
326 345 3.458189 CGTAAACTGGTCTCATCCATCC 58.542 50.000 0.00 0.00 36.84 3.51
327 346 3.118775 CGTAAACTGGTCTCATCCATCCA 60.119 47.826 0.00 0.00 36.84 3.41
328 347 4.443457 CGTAAACTGGTCTCATCCATCCAT 60.443 45.833 0.00 0.00 36.84 3.41
347 366 1.860641 TGGACGAATGCTAGAGGGAA 58.139 50.000 0.00 0.00 0.00 3.97
348 367 2.398588 TGGACGAATGCTAGAGGGAAT 58.601 47.619 0.00 0.00 0.00 3.01
349 368 2.771943 TGGACGAATGCTAGAGGGAATT 59.228 45.455 0.00 0.00 0.00 2.17
350 369 3.199946 TGGACGAATGCTAGAGGGAATTT 59.800 43.478 0.00 0.00 0.00 1.82
351 370 3.561725 GGACGAATGCTAGAGGGAATTTG 59.438 47.826 0.00 0.00 0.00 2.32
352 371 2.945668 ACGAATGCTAGAGGGAATTTGC 59.054 45.455 0.00 0.00 0.00 3.68
353 372 2.032549 CGAATGCTAGAGGGAATTTGCG 60.033 50.000 0.00 0.00 0.00 4.85
357 376 3.206150 TGCTAGAGGGAATTTGCGATTC 58.794 45.455 0.00 4.50 0.00 2.52
359 378 2.691409 AGAGGGAATTTGCGATTCGA 57.309 45.000 10.88 0.00 0.00 3.71
360 379 2.280628 AGAGGGAATTTGCGATTCGAC 58.719 47.619 10.88 1.88 0.00 4.20
362 381 0.725117 GGGAATTTGCGATTCGACGT 59.275 50.000 10.88 0.00 35.59 4.34
364 383 2.413634 GGGAATTTGCGATTCGACGTTT 60.414 45.455 10.88 0.00 35.59 3.60
367 386 3.529634 ATTTGCGATTCGACGTTTGAA 57.470 38.095 10.88 6.63 35.59 2.69
371 390 2.222213 TGCGATTCGACGTTTGAAATGT 59.778 40.909 10.88 1.83 35.59 2.71
378 397 4.624015 TCGACGTTTGAAATGTCCTAACT 58.376 39.130 20.90 0.00 43.01 2.24
383 402 7.410513 CGACGTTTGAAATGTCCTAACTCTTAG 60.411 40.741 20.90 3.22 43.01 2.18
385 404 8.362639 ACGTTTGAAATGTCCTAACTCTTAGTA 58.637 33.333 0.00 0.00 0.00 1.82
386 405 9.199982 CGTTTGAAATGTCCTAACTCTTAGTAA 57.800 33.333 0.00 0.00 0.00 2.24
466 756 9.764363 TCATATAGTTTTAGGATTAGCTGTGTG 57.236 33.333 0.00 0.00 0.00 3.82
471 761 8.863872 AGTTTTAGGATTAGCTGTGTGTATTT 57.136 30.769 0.00 0.00 0.00 1.40
472 762 9.297037 AGTTTTAGGATTAGCTGTGTGTATTTT 57.703 29.630 0.00 0.00 0.00 1.82
475 765 9.953565 TTTAGGATTAGCTGTGTGTATTTTACT 57.046 29.630 0.00 0.00 0.00 2.24
481 771 6.345920 AGCTGTGTGTATTTTACTATTCGC 57.654 37.500 0.00 0.00 0.00 4.70
482 772 5.872617 AGCTGTGTGTATTTTACTATTCGCA 59.127 36.000 0.00 0.00 0.00 5.10
483 773 6.036083 AGCTGTGTGTATTTTACTATTCGCAG 59.964 38.462 0.00 0.00 35.95 5.18
484 774 6.035650 GCTGTGTGTATTTTACTATTCGCAGA 59.964 38.462 0.00 0.00 35.20 4.26
485 775 7.412563 GCTGTGTGTATTTTACTATTCGCAGAA 60.413 37.037 0.00 0.00 45.90 3.02
486 776 8.487313 TGTGTGTATTTTACTATTCGCAGAAT 57.513 30.769 8.46 8.46 45.90 2.40
487 777 9.589111 TGTGTGTATTTTACTATTCGCAGAATA 57.411 29.630 9.55 9.55 45.90 1.75
522 812 9.814507 TTTATTAACACAGTATAAACACAAGCG 57.185 29.630 0.00 0.00 0.00 4.68
523 813 3.806316 ACACAGTATAAACACAAGCGC 57.194 42.857 0.00 0.00 0.00 5.92
524 814 3.399330 ACACAGTATAAACACAAGCGCT 58.601 40.909 2.64 2.64 0.00 5.92
525 815 4.562082 ACACAGTATAAACACAAGCGCTA 58.438 39.130 12.05 0.00 0.00 4.26
526 816 4.387862 ACACAGTATAAACACAAGCGCTAC 59.612 41.667 12.05 0.69 0.00 3.58
527 817 4.387559 CACAGTATAAACACAAGCGCTACA 59.612 41.667 12.05 0.00 0.00 2.74
528 818 5.063438 CACAGTATAAACACAAGCGCTACAT 59.937 40.000 12.05 0.00 0.00 2.29
529 819 6.254804 CACAGTATAAACACAAGCGCTACATA 59.745 38.462 12.05 0.00 0.00 2.29
530 820 6.984474 ACAGTATAAACACAAGCGCTACATAT 59.016 34.615 12.05 6.81 0.00 1.78
531 821 8.139350 ACAGTATAAACACAAGCGCTACATATA 58.861 33.333 12.05 5.82 0.00 0.86
532 822 8.425491 CAGTATAAACACAAGCGCTACATATAC 58.575 37.037 12.05 16.54 0.00 1.47
533 823 8.139350 AGTATAAACACAAGCGCTACATATACA 58.861 33.333 12.05 0.00 0.00 2.29
534 824 5.464965 AAACACAAGCGCTACATATACAC 57.535 39.130 12.05 0.00 0.00 2.90
535 825 4.118093 ACACAAGCGCTACATATACACA 57.882 40.909 12.05 0.00 0.00 3.72
536 826 4.693283 ACACAAGCGCTACATATACACAT 58.307 39.130 12.05 0.00 0.00 3.21
537 827 5.838529 ACACAAGCGCTACATATACACATA 58.161 37.500 12.05 0.00 0.00 2.29
538 828 5.690409 ACACAAGCGCTACATATACACATAC 59.310 40.000 12.05 0.00 0.00 2.39
539 829 5.689961 CACAAGCGCTACATATACACATACA 59.310 40.000 12.05 0.00 0.00 2.29
540 830 5.690409 ACAAGCGCTACATATACACATACAC 59.310 40.000 12.05 0.00 0.00 2.90
541 831 5.707242 AGCGCTACATATACACATACACT 57.293 39.130 8.99 0.00 0.00 3.55
542 832 5.700846 AGCGCTACATATACACATACACTC 58.299 41.667 8.99 0.00 0.00 3.51
543 833 5.240844 AGCGCTACATATACACATACACTCA 59.759 40.000 8.99 0.00 0.00 3.41
544 834 6.071896 AGCGCTACATATACACATACACTCAT 60.072 38.462 8.99 0.00 0.00 2.90
545 835 6.251589 GCGCTACATATACACATACACTCATC 59.748 42.308 0.00 0.00 0.00 2.92
546 836 6.747739 CGCTACATATACACATACACTCATCC 59.252 42.308 0.00 0.00 0.00 3.51
547 837 7.362142 CGCTACATATACACATACACTCATCCT 60.362 40.741 0.00 0.00 0.00 3.24
548 838 8.957466 GCTACATATACACATACACTCATCCTA 58.043 37.037 0.00 0.00 0.00 2.94
551 841 9.533831 ACATATACACATACACTCATCCTATGA 57.466 33.333 0.00 0.00 37.76 2.15
554 844 6.018589 ACACATACACTCATCCTATGATCG 57.981 41.667 0.00 0.00 38.85 3.69
555 845 4.861462 CACATACACTCATCCTATGATCGC 59.139 45.833 0.00 0.00 38.85 4.58
556 846 4.524328 ACATACACTCATCCTATGATCGCA 59.476 41.667 0.00 0.00 38.85 5.10
557 847 3.377346 ACACTCATCCTATGATCGCAC 57.623 47.619 0.00 0.00 38.85 5.34
558 848 2.695147 ACACTCATCCTATGATCGCACA 59.305 45.455 0.00 0.00 38.85 4.57
559 849 3.055591 CACTCATCCTATGATCGCACAC 58.944 50.000 0.00 0.00 38.85 3.82
560 850 2.695147 ACTCATCCTATGATCGCACACA 59.305 45.455 0.00 0.00 38.85 3.72
561 851 3.132824 ACTCATCCTATGATCGCACACAA 59.867 43.478 0.00 0.00 38.85 3.33
562 852 3.721035 TCATCCTATGATCGCACACAAG 58.279 45.455 0.00 0.00 33.59 3.16
563 853 1.939974 TCCTATGATCGCACACAAGC 58.060 50.000 0.00 0.00 0.00 4.01
564 854 1.206849 TCCTATGATCGCACACAAGCA 59.793 47.619 0.00 0.00 0.00 3.91
565 855 2.158914 TCCTATGATCGCACACAAGCAT 60.159 45.455 0.00 0.00 0.00 3.79
566 856 2.222678 CCTATGATCGCACACAAGCATC 59.777 50.000 0.00 0.00 0.00 3.91
567 857 1.741528 ATGATCGCACACAAGCATCA 58.258 45.000 0.00 0.00 36.88 3.07
568 858 1.081094 TGATCGCACACAAGCATCAG 58.919 50.000 0.00 0.00 32.39 2.90
569 859 0.376152 GATCGCACACAAGCATCAGG 59.624 55.000 0.00 0.00 0.00 3.86
570 860 0.036105 ATCGCACACAAGCATCAGGA 60.036 50.000 0.00 0.00 0.00 3.86
571 861 0.950555 TCGCACACAAGCATCAGGAC 60.951 55.000 0.00 0.00 0.00 3.85
572 862 0.952497 CGCACACAAGCATCAGGACT 60.952 55.000 0.00 0.00 0.00 3.85
573 863 1.242076 GCACACAAGCATCAGGACTT 58.758 50.000 0.00 0.00 0.00 3.01
574 864 2.426522 GCACACAAGCATCAGGACTTA 58.573 47.619 0.00 0.00 0.00 2.24
575 865 2.813754 GCACACAAGCATCAGGACTTAA 59.186 45.455 0.00 0.00 0.00 1.85
576 866 3.253188 GCACACAAGCATCAGGACTTAAA 59.747 43.478 0.00 0.00 0.00 1.52
577 867 4.787598 CACACAAGCATCAGGACTTAAAC 58.212 43.478 0.00 0.00 0.00 2.01
578 868 3.821033 ACACAAGCATCAGGACTTAAACC 59.179 43.478 0.00 0.00 0.00 3.27
579 869 4.074970 CACAAGCATCAGGACTTAAACCT 58.925 43.478 0.00 0.00 38.40 3.50
588 878 4.762289 AGGACTTAAACCTGATAGGCTG 57.238 45.455 0.00 0.00 39.63 4.85
589 879 3.456277 AGGACTTAAACCTGATAGGCTGG 59.544 47.826 0.00 0.00 39.63 4.85
590 880 3.433740 GGACTTAAACCTGATAGGCTGGG 60.434 52.174 0.00 0.00 39.63 4.45
591 881 3.454812 GACTTAAACCTGATAGGCTGGGA 59.545 47.826 0.00 0.00 39.63 4.37
592 882 4.047883 ACTTAAACCTGATAGGCTGGGAT 58.952 43.478 0.00 0.00 39.63 3.85
593 883 5.224441 ACTTAAACCTGATAGGCTGGGATA 58.776 41.667 0.00 0.00 39.63 2.59
594 884 5.852250 ACTTAAACCTGATAGGCTGGGATAT 59.148 40.000 0.00 0.00 39.63 1.63
595 885 4.917906 AAACCTGATAGGCTGGGATATC 57.082 45.455 0.00 0.00 39.63 1.63
596 886 3.862600 ACCTGATAGGCTGGGATATCT 57.137 47.619 2.05 0.00 39.63 1.98
597 887 4.974933 ACCTGATAGGCTGGGATATCTA 57.025 45.455 2.05 0.00 39.63 1.98
598 888 5.495710 ACCTGATAGGCTGGGATATCTAT 57.504 43.478 2.05 0.00 39.63 1.98
599 889 5.215069 ACCTGATAGGCTGGGATATCTATG 58.785 45.833 2.05 0.00 39.63 2.23
600 890 5.215069 CCTGATAGGCTGGGATATCTATGT 58.785 45.833 2.05 0.00 32.31 2.29
601 891 5.304101 CCTGATAGGCTGGGATATCTATGTC 59.696 48.000 2.05 0.00 32.31 3.06
602 892 5.211973 TGATAGGCTGGGATATCTATGTCC 58.788 45.833 2.05 0.00 37.35 4.02
619 909 9.607333 ATCTATGTCCCTCTAATCATCTAACAA 57.393 33.333 0.00 0.00 0.00 2.83
620 910 8.861086 TCTATGTCCCTCTAATCATCTAACAAC 58.139 37.037 0.00 0.00 0.00 3.32
621 911 6.867519 TGTCCCTCTAATCATCTAACAACA 57.132 37.500 0.00 0.00 0.00 3.33
622 912 7.437713 TGTCCCTCTAATCATCTAACAACAT 57.562 36.000 0.00 0.00 0.00 2.71
623 913 8.547481 TGTCCCTCTAATCATCTAACAACATA 57.453 34.615 0.00 0.00 0.00 2.29
624 914 9.159254 TGTCCCTCTAATCATCTAACAACATAT 57.841 33.333 0.00 0.00 0.00 1.78
663 953 9.691362 AAAAATCTAACAACATATTGCTTTCGT 57.309 25.926 0.00 0.00 39.66 3.85
665 955 9.988350 AAATCTAACAACATATTGCTTTCGTAG 57.012 29.630 0.00 0.00 39.66 3.51
691 981 2.295629 TGCGCATTTTGAGTCCAAATCA 59.704 40.909 5.66 0.00 41.43 2.57
712 1002 2.255172 CGGCGCAAAACCAGGTGTA 61.255 57.895 10.83 0.00 0.00 2.90
714 1004 1.455248 GGCGCAAAACCAGGTGTATA 58.545 50.000 10.83 0.00 0.00 1.47
737 1027 1.367102 CACGGCAAGCCCAAAACAT 59.633 52.632 5.34 0.00 0.00 2.71
834 1124 1.743321 GAGCCTGACTGGATCCGAGG 61.743 65.000 7.39 10.54 45.05 4.63
838 1128 0.468214 CTGACTGGATCCGAGGCCTA 60.468 60.000 4.42 0.00 0.00 3.93
885 1175 2.753966 CGGCGATTTGTCCCAGCTG 61.754 63.158 6.78 6.78 0.00 4.24
984 1279 0.912006 GGAGCTGAGAGGGGAAAGGT 60.912 60.000 0.00 0.00 0.00 3.50
1203 1498 3.905968 TGATTGATGATTGGCCTGATGT 58.094 40.909 3.32 0.00 0.00 3.06
1214 1509 2.239402 TGGCCTGATGTAGCTTCATGAA 59.761 45.455 10.91 8.12 0.00 2.57
1218 1513 5.303971 GCCTGATGTAGCTTCATGAATAGT 58.696 41.667 10.91 0.00 0.00 2.12
1258 1553 9.184523 TGTATGAATCCCTACTTAATTTGTTGG 57.815 33.333 5.31 5.31 0.00 3.77
1387 1691 7.195374 TGGTTTAATTCTGTCCTACTATGCT 57.805 36.000 0.00 0.00 0.00 3.79
1388 1692 8.313944 TGGTTTAATTCTGTCCTACTATGCTA 57.686 34.615 0.00 0.00 0.00 3.49
1408 1712 5.312079 GCTATATGCAGATTTCACTTCCCT 58.688 41.667 0.00 0.00 42.31 4.20
1438 1742 9.285770 CATATTCTTGAATGAACACAGTGATTG 57.714 33.333 7.81 0.00 0.00 2.67
1501 1806 1.927174 CACATAGCTTGTCGTAGTGGC 59.073 52.381 0.00 0.00 36.00 5.01
1503 1808 2.159226 ACATAGCTTGTCGTAGTGGCTC 60.159 50.000 0.00 0.00 30.89 4.70
1535 1840 1.135523 GCGCTTGAAGTGGCTTAGC 59.864 57.895 7.95 0.00 0.00 3.09
1550 1855 1.699054 TTAGCCAGGATCGCCATGCT 61.699 55.000 0.00 0.00 43.21 3.79
1582 1887 7.811282 TGGAAGGCATATCATTTTAGAAGGTA 58.189 34.615 0.00 0.00 0.00 3.08
1703 2009 7.682628 TGTAGTTTAAGTTTGTATAGGCCACT 58.317 34.615 5.01 0.00 0.00 4.00
1704 2010 8.158789 TGTAGTTTAAGTTTGTATAGGCCACTT 58.841 33.333 5.01 6.56 0.00 3.16
1707 2013 3.366052 AGTTTGTATAGGCCACTTGGG 57.634 47.619 5.01 0.00 40.85 4.12
1720 2029 2.351738 CCACTTGGGCTCGATTTTTGAC 60.352 50.000 0.00 0.00 0.00 3.18
1817 2126 9.683069 ACAATGTATTTGTTTCTCAAACTGATC 57.317 29.630 1.11 0.00 46.51 2.92
1880 2189 5.617528 TGGACCTTGTAGTAACTTTGTCA 57.382 39.130 0.00 0.00 0.00 3.58
1950 2259 7.594015 GCATAGGAGAACTTGATATTGCAAATG 59.406 37.037 1.71 0.00 0.00 2.32
1959 2268 7.096551 ACTTGATATTGCAAATGTTACCCAAC 58.903 34.615 1.71 0.00 35.06 3.77
2132 2441 1.596477 CAATAGCAGGCCCGCTCTC 60.596 63.158 19.00 0.00 42.62 3.20
2138 2447 3.144193 AGGCCCGCTCTCGAGAAG 61.144 66.667 17.36 13.05 38.10 2.85
2204 2513 3.470709 AGATGACAATAGTGAATGCGGG 58.529 45.455 0.00 0.00 0.00 6.13
2228 2537 4.358841 TGGTTGCCATCACCCCCG 62.359 66.667 0.00 0.00 0.00 5.73
2261 2570 1.283613 CCCCTTGGCTATGTGGTTACA 59.716 52.381 0.00 0.00 41.89 2.41
2272 2581 3.485463 TGTGGTTACAAGAGGACCAAG 57.515 47.619 0.00 0.00 44.43 3.61
2346 2655 5.530915 CCATGTGAAAACTTTAGGTCAGTCA 59.469 40.000 0.00 0.00 0.00 3.41
2564 2873 0.322816 AGCACTATGGCCCAACTGTG 60.323 55.000 0.00 8.99 0.00 3.66
2573 2882 1.620822 GCCCAACTGTGTTCTTCCAT 58.379 50.000 0.00 0.00 0.00 3.41
2705 3014 2.358737 CCTGCTGGTGGGACGAAC 60.359 66.667 0.51 0.00 0.00 3.95
2732 3041 2.225522 TGAGTACTGGATTGACCTCCCA 60.226 50.000 0.00 0.00 39.86 4.37
2769 3078 5.907391 CGTGAGTTTGTCAAAGTTGGTAATC 59.093 40.000 7.09 0.00 36.74 1.75
2780 3089 4.899352 AGTTGGTAATCTGAAGAGTGCT 57.101 40.909 0.00 0.00 0.00 4.40
2825 3134 1.577736 CTCATGGAGGGACCTTCACT 58.422 55.000 0.35 0.00 33.86 3.41
2834 3143 1.545428 GGGACCTTCACTGACATTGCA 60.545 52.381 0.00 0.00 0.00 4.08
2870 3179 2.124109 TTCAACGGGCCAGCAACA 60.124 55.556 4.39 0.00 0.00 3.33
2921 3230 0.034089 AGAAGGTTGGCAGGCATACC 60.034 55.000 16.03 16.03 0.00 2.73
2948 3257 1.299976 GGAGCATTTCACCCTCCGT 59.700 57.895 0.00 0.00 36.17 4.69
2993 3302 6.953101 ACTCTCATCTGTCTACTACTCAGAA 58.047 40.000 0.00 0.00 40.73 3.02
3041 3350 2.382882 TGCGATCTGGAGTTCATCTCT 58.617 47.619 0.00 0.00 42.40 3.10
3185 3494 2.262211 CTGTCAATCGATTCGAGCACA 58.738 47.619 14.81 14.11 39.91 4.57
3287 3596 1.056464 CGACCGTGACGTACAACTCG 61.056 60.000 3.64 0.00 0.00 4.18
3493 3802 7.315142 CCTGTTGCTTATTCATGTACATTGTT 58.685 34.615 5.37 0.00 0.00 2.83
3498 3807 7.656412 TGCTTATTCATGTACATTGTTTGTGT 58.344 30.769 5.37 0.00 39.48 3.72
3525 3834 6.880484 AGAATGTTGGTTGGTACGTATGATA 58.120 36.000 0.00 0.00 0.00 2.15
3582 3892 7.702348 GTGCTGGGTATTTTTAGATCACAATTC 59.298 37.037 0.00 0.00 0.00 2.17
3592 3902 8.684386 TTTTAGATCACAATTCCAGTGTTGTA 57.316 30.769 0.00 0.00 36.48 2.41
3601 3920 8.349245 CACAATTCCAGTGTTGTATCTACAAAA 58.651 33.333 4.43 0.00 46.54 2.44
3602 3921 8.908903 ACAATTCCAGTGTTGTATCTACAAAAA 58.091 29.630 4.43 0.00 46.54 1.94
3683 4005 8.091449 ACTAGTTTTTCTGAGGAAGTGAGTATG 58.909 37.037 0.00 0.00 32.61 2.39
3696 4018 7.041030 AGGAAGTGAGTATGTACTGATATCGTG 60.041 40.741 9.52 3.01 36.50 4.35
3707 4029 4.366586 ACTGATATCGTGCACTGAAGATG 58.633 43.478 16.19 3.15 0.00 2.90
3732 4054 3.915437 CCAGAAGGTAAATGTTTGCGT 57.085 42.857 0.00 0.00 0.00 5.24
3782 4104 2.887568 CGCGAGCGCCTTCTGATT 60.888 61.111 2.29 0.00 37.98 2.57
3783 4105 1.588932 CGCGAGCGCCTTCTGATTA 60.589 57.895 2.29 0.00 37.98 1.75
3784 4106 1.145759 CGCGAGCGCCTTCTGATTAA 61.146 55.000 2.29 0.00 37.98 1.40
3785 4107 1.006832 GCGAGCGCCTTCTGATTAAA 58.993 50.000 2.29 0.00 34.56 1.52
3786 4108 1.267582 GCGAGCGCCTTCTGATTAAAC 60.268 52.381 2.29 0.00 34.56 2.01
3787 4109 1.005975 CGAGCGCCTTCTGATTAAACG 60.006 52.381 2.29 0.00 0.00 3.60
3788 4110 0.727398 AGCGCCTTCTGATTAAACGC 59.273 50.000 2.29 0.00 44.79 4.84
3789 4111 0.586502 GCGCCTTCTGATTAAACGCG 60.587 55.000 3.53 3.53 40.97 6.01
3790 4112 0.996462 CGCCTTCTGATTAAACGCGA 59.004 50.000 15.93 0.00 40.50 5.87
3791 4113 1.593006 CGCCTTCTGATTAAACGCGAT 59.407 47.619 15.93 0.00 40.50 4.58
3792 4114 2.347661 CGCCTTCTGATTAAACGCGATC 60.348 50.000 15.93 5.73 40.50 3.69
3793 4115 2.347661 GCCTTCTGATTAAACGCGATCG 60.348 50.000 15.93 11.69 42.43 3.69
3794 4116 3.113322 CCTTCTGATTAAACGCGATCGA 58.887 45.455 21.57 4.64 39.41 3.59
3795 4117 3.550275 CCTTCTGATTAAACGCGATCGAA 59.450 43.478 21.57 11.81 39.41 3.71
3796 4118 4.494597 TTCTGATTAAACGCGATCGAAC 57.505 40.909 21.57 0.10 39.41 3.95
3797 4119 2.528688 TCTGATTAAACGCGATCGAACG 59.471 45.455 21.57 16.39 39.41 3.95
3805 4127 4.003534 CGATCGAACGCTGCATCT 57.996 55.556 10.26 0.00 0.00 2.90
3806 4128 2.291843 CGATCGAACGCTGCATCTT 58.708 52.632 10.26 0.00 0.00 2.40
3807 4129 0.228238 CGATCGAACGCTGCATCTTC 59.772 55.000 10.26 0.00 0.00 2.87
3808 4130 0.579156 GATCGAACGCTGCATCTTCC 59.421 55.000 0.00 0.00 0.00 3.46
3809 4131 0.108186 ATCGAACGCTGCATCTTCCA 60.108 50.000 0.00 0.00 0.00 3.53
3810 4132 0.320334 TCGAACGCTGCATCTTCCAA 60.320 50.000 0.00 0.00 0.00 3.53
3811 4133 0.516877 CGAACGCTGCATCTTCCAAA 59.483 50.000 0.00 0.00 0.00 3.28
3812 4134 1.725931 CGAACGCTGCATCTTCCAAAC 60.726 52.381 0.00 0.00 0.00 2.93
3813 4135 1.537202 GAACGCTGCATCTTCCAAACT 59.463 47.619 0.00 0.00 0.00 2.66
3814 4136 0.877071 ACGCTGCATCTTCCAAACTG 59.123 50.000 0.00 0.00 0.00 3.16
3815 4137 0.455633 CGCTGCATCTTCCAAACTGC 60.456 55.000 0.00 0.00 35.21 4.40
3816 4138 0.886563 GCTGCATCTTCCAAACTGCT 59.113 50.000 0.00 0.00 35.66 4.24
3817 4139 1.402456 GCTGCATCTTCCAAACTGCTG 60.402 52.381 0.00 0.00 35.66 4.41
3818 4140 1.884579 CTGCATCTTCCAAACTGCTGT 59.115 47.619 0.00 0.00 35.66 4.40
3819 4141 3.076621 CTGCATCTTCCAAACTGCTGTA 58.923 45.455 0.00 0.00 35.66 2.74
3820 4142 3.689347 TGCATCTTCCAAACTGCTGTAT 58.311 40.909 0.00 0.00 35.66 2.29
3821 4143 4.842574 TGCATCTTCCAAACTGCTGTATA 58.157 39.130 0.00 0.00 35.66 1.47
3822 4144 4.877823 TGCATCTTCCAAACTGCTGTATAG 59.122 41.667 0.00 0.00 35.66 1.31
3823 4145 5.118990 GCATCTTCCAAACTGCTGTATAGA 58.881 41.667 0.00 0.00 0.00 1.98
3824 4146 5.007136 GCATCTTCCAAACTGCTGTATAGAC 59.993 44.000 0.00 0.00 0.00 2.59
3825 4147 4.744570 TCTTCCAAACTGCTGTATAGACG 58.255 43.478 0.00 0.00 0.00 4.18
3826 4148 4.461431 TCTTCCAAACTGCTGTATAGACGA 59.539 41.667 0.00 0.00 0.00 4.20
3827 4149 5.127194 TCTTCCAAACTGCTGTATAGACGAT 59.873 40.000 0.00 0.00 0.00 3.73
3828 4150 4.682787 TCCAAACTGCTGTATAGACGATG 58.317 43.478 0.00 0.00 0.00 3.84
3829 4151 3.804325 CCAAACTGCTGTATAGACGATGG 59.196 47.826 0.00 0.00 0.00 3.51
3830 4152 4.441495 CCAAACTGCTGTATAGACGATGGA 60.441 45.833 0.00 0.00 0.00 3.41
3831 4153 5.292765 CAAACTGCTGTATAGACGATGGAT 58.707 41.667 0.00 0.00 0.00 3.41
3832 4154 4.511617 ACTGCTGTATAGACGATGGATG 57.488 45.455 0.00 0.00 0.00 3.51
3833 4155 3.891977 ACTGCTGTATAGACGATGGATGT 59.108 43.478 0.00 0.00 0.00 3.06
3834 4156 4.233005 CTGCTGTATAGACGATGGATGTG 58.767 47.826 0.00 0.00 0.00 3.21
3835 4157 3.636764 TGCTGTATAGACGATGGATGTGT 59.363 43.478 0.00 0.00 0.00 3.72
3836 4158 3.983988 GCTGTATAGACGATGGATGTGTG 59.016 47.826 0.00 0.00 0.00 3.82
3837 4159 3.977427 TGTATAGACGATGGATGTGTGC 58.023 45.455 0.00 0.00 0.00 4.57
3838 4160 3.383185 TGTATAGACGATGGATGTGTGCA 59.617 43.478 0.00 0.00 0.00 4.57
3839 4161 2.293677 TAGACGATGGATGTGTGCAC 57.706 50.000 10.75 10.75 0.00 4.57
3840 4162 0.737367 AGACGATGGATGTGTGCACG 60.737 55.000 13.13 0.00 0.00 5.34
3841 4163 0.735978 GACGATGGATGTGTGCACGA 60.736 55.000 13.13 0.93 0.00 4.35
3842 4164 1.014044 ACGATGGATGTGTGCACGAC 61.014 55.000 13.13 11.94 0.00 4.34
3843 4165 1.013524 CGATGGATGTGTGCACGACA 61.014 55.000 19.59 19.59 0.00 4.35
3844 4166 0.723414 GATGGATGTGTGCACGACAG 59.277 55.000 21.10 0.00 34.28 3.51
3845 4167 0.035317 ATGGATGTGTGCACGACAGT 59.965 50.000 21.10 12.74 34.28 3.55
3854 4176 4.169102 CACGACAGTGGGACGATG 57.831 61.111 12.10 4.96 44.34 3.84
3855 4177 1.446099 CACGACAGTGGGACGATGG 60.446 63.158 12.10 0.75 44.34 3.51
3856 4178 1.605451 ACGACAGTGGGACGATGGA 60.605 57.895 12.10 0.00 0.00 3.41
3857 4179 0.970937 ACGACAGTGGGACGATGGAT 60.971 55.000 12.10 0.00 0.00 3.41
3858 4180 1.029681 CGACAGTGGGACGATGGATA 58.970 55.000 0.00 0.00 0.00 2.59
3859 4181 1.407618 CGACAGTGGGACGATGGATAA 59.592 52.381 0.00 0.00 0.00 1.75
3860 4182 2.035961 CGACAGTGGGACGATGGATAAT 59.964 50.000 0.00 0.00 0.00 1.28
3861 4183 3.654414 GACAGTGGGACGATGGATAATC 58.346 50.000 0.00 0.00 0.00 1.75
3862 4184 2.368875 ACAGTGGGACGATGGATAATCC 59.631 50.000 0.00 0.00 36.96 3.01
3874 4196 4.908601 TGGATAATCCAGCCGTTGATAT 57.091 40.909 0.00 0.00 42.67 1.63
3875 4197 4.578871 TGGATAATCCAGCCGTTGATATG 58.421 43.478 0.00 0.00 42.67 1.78
3876 4198 3.375299 GGATAATCCAGCCGTTGATATGC 59.625 47.826 0.00 0.00 36.28 3.14
3877 4199 1.229428 AATCCAGCCGTTGATATGCG 58.771 50.000 0.00 0.00 0.00 4.73
3878 4200 1.230635 ATCCAGCCGTTGATATGCGC 61.231 55.000 0.00 0.00 0.00 6.09
3879 4201 1.889105 CCAGCCGTTGATATGCGCT 60.889 57.895 9.73 0.00 0.00 5.92
3880 4202 1.277739 CAGCCGTTGATATGCGCTG 59.722 57.895 9.73 0.00 0.00 5.18
3881 4203 1.889105 AGCCGTTGATATGCGCTGG 60.889 57.895 9.73 0.00 0.00 4.85
3882 4204 1.887242 GCCGTTGATATGCGCTGGA 60.887 57.895 9.73 0.00 0.00 3.86
3883 4205 1.230635 GCCGTTGATATGCGCTGGAT 61.231 55.000 9.73 0.00 0.00 3.41
3884 4206 1.939381 GCCGTTGATATGCGCTGGATA 60.939 52.381 9.73 0.00 0.00 2.59
3885 4207 1.995484 CCGTTGATATGCGCTGGATAG 59.005 52.381 9.73 0.00 0.00 2.08
3886 4208 2.610479 CCGTTGATATGCGCTGGATAGT 60.610 50.000 9.73 0.00 0.00 2.12
3887 4209 3.366985 CCGTTGATATGCGCTGGATAGTA 60.367 47.826 9.73 0.00 0.00 1.82
3888 4210 4.424626 CGTTGATATGCGCTGGATAGTAT 58.575 43.478 9.73 0.00 0.00 2.12
3889 4211 4.266265 CGTTGATATGCGCTGGATAGTATG 59.734 45.833 9.73 0.00 0.00 2.39
3890 4212 3.785486 TGATATGCGCTGGATAGTATGC 58.215 45.455 9.73 0.00 0.00 3.14
3891 4213 3.195396 TGATATGCGCTGGATAGTATGCA 59.805 43.478 9.73 4.13 34.75 3.96
3892 4214 2.775911 ATGCGCTGGATAGTATGCAT 57.224 45.000 9.73 3.79 35.81 3.96
3893 4215 1.799544 TGCGCTGGATAGTATGCATG 58.200 50.000 10.16 2.65 0.00 4.06
3894 4216 1.081892 GCGCTGGATAGTATGCATGG 58.918 55.000 10.16 1.78 0.00 3.66
3895 4217 1.338105 GCGCTGGATAGTATGCATGGA 60.338 52.381 10.16 0.00 0.00 3.41
3896 4218 2.341257 CGCTGGATAGTATGCATGGAC 58.659 52.381 10.16 0.00 0.00 4.02
3897 4219 2.341257 GCTGGATAGTATGCATGGACG 58.659 52.381 10.16 0.00 0.00 4.79
3898 4220 2.932622 GCTGGATAGTATGCATGGACGG 60.933 54.545 10.16 0.11 0.00 4.79
3899 4221 1.001974 TGGATAGTATGCATGGACGGC 59.998 52.381 10.16 0.00 0.00 5.68
3900 4222 1.276421 GGATAGTATGCATGGACGGCT 59.724 52.381 10.16 0.66 0.00 5.52
3901 4223 2.289694 GGATAGTATGCATGGACGGCTT 60.290 50.000 10.16 0.00 0.00 4.35
3902 4224 2.238942 TAGTATGCATGGACGGCTTG 57.761 50.000 10.16 0.00 0.00 4.01
3903 4225 0.541392 AGTATGCATGGACGGCTTGA 59.459 50.000 10.16 0.00 0.00 3.02
3904 4226 0.657840 GTATGCATGGACGGCTTGAC 59.342 55.000 10.16 0.00 0.00 3.18
3905 4227 0.251634 TATGCATGGACGGCTTGACA 59.748 50.000 10.16 0.00 0.00 3.58
3906 4228 0.394762 ATGCATGGACGGCTTGACAT 60.395 50.000 0.00 0.00 0.00 3.06
3907 4229 1.307355 TGCATGGACGGCTTGACATG 61.307 55.000 1.23 1.23 42.61 3.21
3908 4230 1.308069 GCATGGACGGCTTGACATGT 61.308 55.000 0.00 0.00 41.94 3.21
3909 4231 0.448990 CATGGACGGCTTGACATGTG 59.551 55.000 1.15 0.00 36.76 3.21
3910 4232 1.308069 ATGGACGGCTTGACATGTGC 61.308 55.000 1.15 0.00 0.00 4.57
3911 4233 1.672356 GGACGGCTTGACATGTGCT 60.672 57.895 1.15 0.00 0.00 4.40
3912 4234 1.499056 GACGGCTTGACATGTGCTG 59.501 57.895 1.15 8.64 38.86 4.41
3913 4235 2.177531 CGGCTTGACATGTGCTGC 59.822 61.111 1.15 3.91 0.00 5.25
3914 4236 2.570181 GGCTTGACATGTGCTGCC 59.430 61.111 1.15 9.98 0.00 4.85
3915 4237 2.177531 GCTTGACATGTGCTGCCG 59.822 61.111 1.15 0.00 0.00 5.69
3916 4238 2.620112 GCTTGACATGTGCTGCCGT 61.620 57.895 1.15 0.00 0.00 5.68
3917 4239 1.208358 CTTGACATGTGCTGCCGTG 59.792 57.895 1.15 3.05 0.00 4.94
3918 4240 2.791396 CTTGACATGTGCTGCCGTGC 62.791 60.000 1.15 0.00 0.00 5.34
3919 4241 3.356267 GACATGTGCTGCCGTGCA 61.356 61.111 1.15 0.00 41.05 4.57
3925 4247 3.279116 TGCTGCCGTGCACAAGTC 61.279 61.111 18.64 7.88 38.12 3.01
3926 4248 4.374702 GCTGCCGTGCACAAGTCG 62.375 66.667 18.64 1.62 33.79 4.18
3927 4249 2.967076 CTGCCGTGCACAAGTCGT 60.967 61.111 18.64 0.00 33.79 4.34
3928 4250 2.943345 CTGCCGTGCACAAGTCGTC 61.943 63.158 18.64 0.00 33.79 4.20
3929 4251 3.712881 GCCGTGCACAAGTCGTCC 61.713 66.667 18.64 0.00 0.00 4.79
3930 4252 2.279851 CCGTGCACAAGTCGTCCA 60.280 61.111 18.64 0.00 0.00 4.02
3931 4253 2.594962 CCGTGCACAAGTCGTCCAC 61.595 63.158 18.64 0.00 0.00 4.02
3932 4254 1.880796 CGTGCACAAGTCGTCCACA 60.881 57.895 18.64 0.00 0.00 4.17
3933 4255 1.641677 GTGCACAAGTCGTCCACAC 59.358 57.895 13.17 0.00 0.00 3.82
3935 4257 1.881252 GCACAAGTCGTCCACACGT 60.881 57.895 0.00 0.00 46.76 4.49
3936 4258 1.818221 GCACAAGTCGTCCACACGTC 61.818 60.000 0.00 0.00 46.76 4.34
3937 4259 1.298863 ACAAGTCGTCCACACGTCG 60.299 57.895 0.00 0.00 46.76 5.12
3938 4260 1.298863 CAAGTCGTCCACACGTCGT 60.299 57.895 0.00 0.00 46.76 4.34
3939 4261 1.009222 AAGTCGTCCACACGTCGTC 60.009 57.895 0.00 0.00 46.76 4.20
3940 4262 2.706523 AAGTCGTCCACACGTCGTCG 62.707 60.000 0.00 0.00 46.76 5.12
3951 4273 3.591442 CGTCGTCGTGTGTATAGCA 57.409 52.632 0.00 0.00 0.00 3.49
3952 4274 1.453719 CGTCGTCGTGTGTATAGCAG 58.546 55.000 0.00 0.00 0.00 4.24
3953 4275 1.189403 GTCGTCGTGTGTATAGCAGC 58.811 55.000 0.00 0.00 0.00 5.25
3954 4276 0.806241 TCGTCGTGTGTATAGCAGCA 59.194 50.000 0.00 0.00 0.00 4.41
3955 4277 1.404035 TCGTCGTGTGTATAGCAGCAT 59.596 47.619 0.00 0.00 0.00 3.79
3956 4278 2.614983 TCGTCGTGTGTATAGCAGCATA 59.385 45.455 0.00 0.00 0.00 3.14
3957 4279 2.973879 CGTCGTGTGTATAGCAGCATAG 59.026 50.000 0.00 0.00 0.00 2.23
3958 4280 2.726760 GTCGTGTGTATAGCAGCATAGC 59.273 50.000 0.00 0.00 0.00 2.97
3959 4281 2.360801 TCGTGTGTATAGCAGCATAGCA 59.639 45.455 0.00 0.00 36.85 3.49
3960 4282 2.728318 CGTGTGTATAGCAGCATAGCAG 59.272 50.000 0.00 0.00 36.85 4.24
3961 4283 2.478134 GTGTGTATAGCAGCATAGCAGC 59.522 50.000 0.00 0.00 41.34 5.25
3962 4284 1.723542 GTGTATAGCAGCATAGCAGCG 59.276 52.381 0.00 0.00 45.54 5.18
3963 4285 0.718343 GTATAGCAGCATAGCAGCGC 59.282 55.000 0.00 0.00 45.54 5.92
3964 4286 0.605083 TATAGCAGCATAGCAGCGCT 59.395 50.000 2.64 2.64 45.54 5.92
4009 4332 0.580104 CGACCCACGTGTGACTTTTC 59.420 55.000 15.65 0.00 37.22 2.29
4011 4334 2.285977 GACCCACGTGTGACTTTTCTT 58.714 47.619 15.65 0.00 0.00 2.52
4038 4361 3.835395 CACCACCCCTCCTATCTTATCTC 59.165 52.174 0.00 0.00 0.00 2.75
4048 4371 6.239743 CCTCCTATCTTATCTCCTCCCAAAAC 60.240 46.154 0.00 0.00 0.00 2.43
4064 4387 0.673437 AAACAAATGTGGCCCACTCG 59.327 50.000 16.23 3.26 35.11 4.18
4072 4395 1.302192 TGGCCCACTCGTTTGCTAC 60.302 57.895 0.00 0.00 0.00 3.58
4077 4400 1.540363 CCCACTCGTTTGCTACAGTGT 60.540 52.381 0.00 0.00 35.72 3.55
4097 4420 3.201487 TGTATCGTCTCCTACCTCCAGAA 59.799 47.826 0.00 0.00 0.00 3.02
4098 4421 2.893215 TCGTCTCCTACCTCCAGAAA 57.107 50.000 0.00 0.00 0.00 2.52
4104 4427 1.549170 TCCTACCTCCAGAAACGCTTC 59.451 52.381 0.00 0.00 0.00 3.86
4105 4428 1.550976 CCTACCTCCAGAAACGCTTCT 59.449 52.381 0.00 0.00 42.96 2.85
4123 4447 2.279517 GTAGATGGCTCCACCGCG 60.280 66.667 0.00 0.00 43.94 6.46
4149 4474 1.600023 TTTTTCAATCTCCGCACCGT 58.400 45.000 0.00 0.00 0.00 4.83
4166 4491 1.609061 CCGTGATGCACAAACTCTCCT 60.609 52.381 0.00 0.00 33.40 3.69
4180 4505 3.241530 TCCTGCAACGGAGGTGCT 61.242 61.111 11.50 0.00 31.85 4.40
4186 4511 1.071471 CAACGGAGGTGCTTGGACT 59.929 57.895 0.00 0.00 0.00 3.85
4187 4512 1.071471 AACGGAGGTGCTTGGACTG 59.929 57.895 0.00 0.00 0.00 3.51
4251 4577 4.802051 ATGCCAAGCCGTGCCGAT 62.802 61.111 0.00 0.00 0.00 4.18
4283 4609 0.038166 ATGACCATGGCGAAGGTTGT 59.962 50.000 13.04 0.00 38.50 3.32
4285 4611 0.605319 GACCATGGCGAAGGTTGTGA 60.605 55.000 13.04 0.00 38.50 3.58
4311 4637 0.317854 CGAGCGGATAACGATGCTGA 60.318 55.000 0.00 0.00 43.91 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.104963 GAGGACCACAAGAACCTTGTCT 59.895 50.000 9.17 4.36 32.53 3.41
34 35 1.663739 CGTCGGAGGACCACAAGAA 59.336 57.895 0.00 0.00 40.17 2.52
36 37 2.432628 GCGTCGGAGGACCACAAG 60.433 66.667 1.18 0.00 40.17 3.16
62 63 2.432628 GTTGTCGTCCCTCCAGCG 60.433 66.667 0.00 0.00 0.00 5.18
80 81 4.796231 ACCGCCGCTGTCGTCATC 62.796 66.667 0.00 0.00 0.00 2.92
100 113 1.007964 CGACCAGCTCTATCCTGCG 60.008 63.158 0.00 0.00 0.00 5.18
107 120 0.182061 ATACCGGACGACCAGCTCTA 59.818 55.000 9.46 0.00 35.59 2.43
109 122 0.592148 CTATACCGGACGACCAGCTC 59.408 60.000 9.46 0.00 35.59 4.09
110 123 0.822532 CCTATACCGGACGACCAGCT 60.823 60.000 9.46 0.00 35.59 4.24
113 126 1.851304 AAACCTATACCGGACGACCA 58.149 50.000 9.46 0.00 35.59 4.02
115 128 4.998788 ACTTAAAACCTATACCGGACGAC 58.001 43.478 9.46 0.00 0.00 4.34
117 130 6.726258 AAAACTTAAAACCTATACCGGACG 57.274 37.500 9.46 0.00 0.00 4.79
195 214 6.073548 ACTCGACTGATTTCATTCAAGTTCAC 60.074 38.462 0.00 0.00 0.00 3.18
247 266 4.562394 CCGCATACATTTCAAACATGGTTC 59.438 41.667 0.00 0.00 0.00 3.62
252 271 6.204688 ACGATATCCGCATACATTTCAAACAT 59.795 34.615 0.00 0.00 43.32 2.71
254 273 5.985781 ACGATATCCGCATACATTTCAAAC 58.014 37.500 0.00 0.00 43.32 2.93
264 283 4.242475 GGACATTCAACGATATCCGCATA 58.758 43.478 0.00 0.00 43.32 3.14
271 290 3.243771 GGGAGACGGACATTCAACGATAT 60.244 47.826 0.00 0.00 0.00 1.63
272 291 2.100252 GGGAGACGGACATTCAACGATA 59.900 50.000 0.00 0.00 0.00 2.92
274 293 0.245539 GGGAGACGGACATTCAACGA 59.754 55.000 0.00 0.00 0.00 3.85
288 307 3.458163 GGACACGGATGCGGGAGA 61.458 66.667 18.37 0.00 0.00 3.71
289 308 4.873129 CGGACACGGATGCGGGAG 62.873 72.222 18.37 5.04 36.18 4.30
304 323 3.458189 GATGGATGAGACCAGTTTACGG 58.542 50.000 0.00 0.00 43.49 4.02
307 326 5.039920 CATGGATGGATGAGACCAGTTTA 57.960 43.478 0.00 0.00 43.49 2.01
309 328 3.572632 CATGGATGGATGAGACCAGTT 57.427 47.619 0.00 0.00 43.49 3.16
322 341 3.324117 CTCTAGCATTCGTCCATGGATG 58.676 50.000 25.71 25.71 0.00 3.51
323 342 2.301296 CCTCTAGCATTCGTCCATGGAT 59.699 50.000 19.62 1.85 0.00 3.41
325 344 1.270518 CCCTCTAGCATTCGTCCATGG 60.271 57.143 4.97 4.97 0.00 3.66
326 345 1.688735 TCCCTCTAGCATTCGTCCATG 59.311 52.381 0.00 0.00 0.00 3.66
327 346 2.088104 TCCCTCTAGCATTCGTCCAT 57.912 50.000 0.00 0.00 0.00 3.41
328 347 1.860641 TTCCCTCTAGCATTCGTCCA 58.139 50.000 0.00 0.00 0.00 4.02
330 349 3.002759 GCAAATTCCCTCTAGCATTCGTC 59.997 47.826 0.00 0.00 0.00 4.20
334 353 3.281727 TCGCAAATTCCCTCTAGCATT 57.718 42.857 0.00 0.00 0.00 3.56
338 357 3.491267 GTCGAATCGCAAATTCCCTCTAG 59.509 47.826 0.00 0.00 0.00 2.43
339 358 3.454375 GTCGAATCGCAAATTCCCTCTA 58.546 45.455 0.00 0.00 0.00 2.43
340 359 2.280628 GTCGAATCGCAAATTCCCTCT 58.719 47.619 0.00 0.00 0.00 3.69
341 360 1.004927 CGTCGAATCGCAAATTCCCTC 60.005 52.381 0.00 0.00 0.00 4.30
347 366 3.529634 TTCAAACGTCGAATCGCAAAT 57.470 38.095 0.00 0.00 0.00 2.32
348 367 3.320733 TTTCAAACGTCGAATCGCAAA 57.679 38.095 0.00 0.00 0.00 3.68
349 368 3.222361 CATTTCAAACGTCGAATCGCAA 58.778 40.909 0.00 0.00 0.00 4.85
350 369 2.222213 ACATTTCAAACGTCGAATCGCA 59.778 40.909 0.00 0.00 0.00 5.10
351 370 2.832745 GACATTTCAAACGTCGAATCGC 59.167 45.455 0.00 0.00 0.00 4.58
352 371 3.122948 AGGACATTTCAAACGTCGAATCG 59.877 43.478 0.00 0.00 0.00 3.34
353 372 4.663636 AGGACATTTCAAACGTCGAATC 57.336 40.909 0.00 0.00 0.00 2.52
357 376 4.684703 AGAGTTAGGACATTTCAAACGTCG 59.315 41.667 0.00 0.00 0.00 5.12
359 378 7.215085 ACTAAGAGTTAGGACATTTCAAACGT 58.785 34.615 0.00 0.00 37.57 3.99
360 379 7.653767 ACTAAGAGTTAGGACATTTCAAACG 57.346 36.000 0.00 0.00 37.57 3.60
437 651 9.160412 ACAGCTAATCCTAAAACTATATGAGGT 57.840 33.333 0.00 0.00 0.00 3.85
438 652 9.429359 CACAGCTAATCCTAAAACTATATGAGG 57.571 37.037 0.00 0.00 0.00 3.86
440 654 9.764363 CACACAGCTAATCCTAAAACTATATGA 57.236 33.333 0.00 0.00 0.00 2.15
461 751 7.892778 TTCTGCGAATAGTAAAATACACACA 57.107 32.000 0.00 0.00 0.00 3.72
496 786 9.814507 CGCTTGTGTTTATACTGTGTTAATAAA 57.185 29.630 0.00 0.00 0.00 1.40
497 787 7.958567 GCGCTTGTGTTTATACTGTGTTAATAA 59.041 33.333 0.00 0.00 0.00 1.40
498 788 7.332430 AGCGCTTGTGTTTATACTGTGTTAATA 59.668 33.333 2.64 0.00 0.00 0.98
499 789 6.148811 AGCGCTTGTGTTTATACTGTGTTAAT 59.851 34.615 2.64 0.00 0.00 1.40
500 790 5.467399 AGCGCTTGTGTTTATACTGTGTTAA 59.533 36.000 2.64 0.00 0.00 2.01
501 791 4.992319 AGCGCTTGTGTTTATACTGTGTTA 59.008 37.500 2.64 0.00 0.00 2.41
502 792 3.813166 AGCGCTTGTGTTTATACTGTGTT 59.187 39.130 2.64 0.00 0.00 3.32
503 793 3.399330 AGCGCTTGTGTTTATACTGTGT 58.601 40.909 2.64 0.00 0.00 3.72
504 794 4.387559 TGTAGCGCTTGTGTTTATACTGTG 59.612 41.667 18.68 0.00 0.00 3.66
505 795 4.562082 TGTAGCGCTTGTGTTTATACTGT 58.438 39.130 18.68 0.00 0.00 3.55
506 796 5.718649 ATGTAGCGCTTGTGTTTATACTG 57.281 39.130 18.68 0.00 0.00 2.74
507 797 8.139350 TGTATATGTAGCGCTTGTGTTTATACT 58.861 33.333 18.68 0.00 0.00 2.12
508 798 8.212495 GTGTATATGTAGCGCTTGTGTTTATAC 58.788 37.037 18.68 17.42 0.00 1.47
509 799 7.921745 TGTGTATATGTAGCGCTTGTGTTTATA 59.078 33.333 18.68 6.66 0.00 0.98
510 800 6.759356 TGTGTATATGTAGCGCTTGTGTTTAT 59.241 34.615 18.68 7.64 0.00 1.40
511 801 6.100668 TGTGTATATGTAGCGCTTGTGTTTA 58.899 36.000 18.68 0.00 0.00 2.01
512 802 4.932799 TGTGTATATGTAGCGCTTGTGTTT 59.067 37.500 18.68 0.00 0.00 2.83
513 803 4.500127 TGTGTATATGTAGCGCTTGTGTT 58.500 39.130 18.68 0.51 0.00 3.32
514 804 4.118093 TGTGTATATGTAGCGCTTGTGT 57.882 40.909 18.68 2.83 0.00 3.72
515 805 5.689961 TGTATGTGTATATGTAGCGCTTGTG 59.310 40.000 18.68 0.00 0.00 3.33
516 806 5.690409 GTGTATGTGTATATGTAGCGCTTGT 59.310 40.000 18.68 4.45 0.00 3.16
517 807 5.920840 AGTGTATGTGTATATGTAGCGCTTG 59.079 40.000 18.68 0.00 0.00 4.01
518 808 6.085555 AGTGTATGTGTATATGTAGCGCTT 57.914 37.500 18.68 0.00 0.00 4.68
519 809 5.240844 TGAGTGTATGTGTATATGTAGCGCT 59.759 40.000 17.26 17.26 0.00 5.92
520 810 5.458015 TGAGTGTATGTGTATATGTAGCGC 58.542 41.667 0.00 0.00 0.00 5.92
521 811 6.747739 GGATGAGTGTATGTGTATATGTAGCG 59.252 42.308 0.00 0.00 0.00 4.26
522 812 7.831753 AGGATGAGTGTATGTGTATATGTAGC 58.168 38.462 0.00 0.00 0.00 3.58
525 815 9.533831 TCATAGGATGAGTGTATGTGTATATGT 57.466 33.333 0.00 0.00 33.59 2.29
528 818 8.893727 CGATCATAGGATGAGTGTATGTGTATA 58.106 37.037 0.00 0.00 43.53 1.47
529 819 7.629437 GCGATCATAGGATGAGTGTATGTGTAT 60.629 40.741 0.00 0.00 43.53 2.29
530 820 6.349363 GCGATCATAGGATGAGTGTATGTGTA 60.349 42.308 0.00 0.00 43.53 2.90
531 821 5.565637 GCGATCATAGGATGAGTGTATGTGT 60.566 44.000 0.00 0.00 43.53 3.72
532 822 4.861462 GCGATCATAGGATGAGTGTATGTG 59.139 45.833 0.00 0.00 43.53 3.21
533 823 4.524328 TGCGATCATAGGATGAGTGTATGT 59.476 41.667 0.00 0.00 43.53 2.29
534 824 4.861462 GTGCGATCATAGGATGAGTGTATG 59.139 45.833 0.00 0.00 43.53 2.39
535 825 4.524328 TGTGCGATCATAGGATGAGTGTAT 59.476 41.667 0.00 0.00 43.53 2.29
536 826 3.888930 TGTGCGATCATAGGATGAGTGTA 59.111 43.478 0.00 0.00 43.53 2.90
537 827 2.695147 TGTGCGATCATAGGATGAGTGT 59.305 45.455 0.00 0.00 43.53 3.55
538 828 3.055591 GTGTGCGATCATAGGATGAGTG 58.944 50.000 0.00 0.00 43.53 3.51
539 829 2.695147 TGTGTGCGATCATAGGATGAGT 59.305 45.455 0.00 0.00 43.53 3.41
540 830 3.375782 TGTGTGCGATCATAGGATGAG 57.624 47.619 0.00 0.00 43.53 2.90
541 831 3.721035 CTTGTGTGCGATCATAGGATGA 58.279 45.455 0.00 0.00 44.55 2.92
542 832 2.222678 GCTTGTGTGCGATCATAGGATG 59.777 50.000 0.00 0.00 32.67 3.51
543 833 2.158914 TGCTTGTGTGCGATCATAGGAT 60.159 45.455 0.00 0.00 36.13 3.24
544 834 1.206849 TGCTTGTGTGCGATCATAGGA 59.793 47.619 0.00 0.00 35.36 2.94
545 835 1.655484 TGCTTGTGTGCGATCATAGG 58.345 50.000 0.00 0.00 35.36 2.57
546 836 2.867975 TGATGCTTGTGTGCGATCATAG 59.132 45.455 0.00 0.00 35.36 2.23
547 837 2.867975 CTGATGCTTGTGTGCGATCATA 59.132 45.455 0.00 0.00 33.55 2.15
548 838 1.669265 CTGATGCTTGTGTGCGATCAT 59.331 47.619 0.00 0.00 33.55 2.45
549 839 1.081094 CTGATGCTTGTGTGCGATCA 58.919 50.000 0.00 0.00 35.36 2.92
550 840 0.376152 CCTGATGCTTGTGTGCGATC 59.624 55.000 0.00 0.00 35.36 3.69
551 841 0.036105 TCCTGATGCTTGTGTGCGAT 60.036 50.000 0.00 0.00 35.36 4.58
552 842 0.950555 GTCCTGATGCTTGTGTGCGA 60.951 55.000 0.00 0.00 35.36 5.10
553 843 0.952497 AGTCCTGATGCTTGTGTGCG 60.952 55.000 0.00 0.00 35.36 5.34
554 844 1.242076 AAGTCCTGATGCTTGTGTGC 58.758 50.000 0.00 0.00 0.00 4.57
555 845 4.320494 GGTTTAAGTCCTGATGCTTGTGTG 60.320 45.833 0.00 0.00 0.00 3.82
556 846 3.821033 GGTTTAAGTCCTGATGCTTGTGT 59.179 43.478 0.00 0.00 0.00 3.72
557 847 4.074970 AGGTTTAAGTCCTGATGCTTGTG 58.925 43.478 1.28 0.00 33.62 3.33
558 848 4.373156 AGGTTTAAGTCCTGATGCTTGT 57.627 40.909 1.28 0.00 33.62 3.16
567 857 3.456277 CCAGCCTATCAGGTTTAAGTCCT 59.544 47.826 0.00 0.00 37.80 3.85
568 858 3.433740 CCCAGCCTATCAGGTTTAAGTCC 60.434 52.174 0.00 0.00 37.80 3.85
569 859 3.454812 TCCCAGCCTATCAGGTTTAAGTC 59.545 47.826 0.00 0.00 37.80 3.01
570 860 3.460825 TCCCAGCCTATCAGGTTTAAGT 58.539 45.455 0.00 0.00 37.80 2.24
571 861 4.713792 ATCCCAGCCTATCAGGTTTAAG 57.286 45.455 0.00 0.00 37.80 1.85
572 862 6.091555 AGATATCCCAGCCTATCAGGTTTAA 58.908 40.000 0.00 0.00 37.80 1.52
573 863 5.665701 AGATATCCCAGCCTATCAGGTTTA 58.334 41.667 0.00 0.00 37.80 2.01
574 864 4.507342 AGATATCCCAGCCTATCAGGTTT 58.493 43.478 0.00 0.00 37.80 3.27
575 865 4.153371 AGATATCCCAGCCTATCAGGTT 57.847 45.455 0.00 0.00 37.80 3.50
576 866 3.862600 AGATATCCCAGCCTATCAGGT 57.137 47.619 0.00 0.00 37.80 4.00
577 867 5.215069 ACATAGATATCCCAGCCTATCAGG 58.785 45.833 0.00 0.00 38.80 3.86
578 868 5.304101 GGACATAGATATCCCAGCCTATCAG 59.696 48.000 0.00 0.00 0.00 2.90
579 869 5.211973 GGACATAGATATCCCAGCCTATCA 58.788 45.833 0.00 0.00 0.00 2.15
580 870 5.799827 GGACATAGATATCCCAGCCTATC 57.200 47.826 0.00 0.00 0.00 2.08
593 883 9.607333 TTGTTAGATGATTAGAGGGACATAGAT 57.393 33.333 0.00 0.00 0.00 1.98
594 884 8.861086 GTTGTTAGATGATTAGAGGGACATAGA 58.139 37.037 0.00 0.00 0.00 1.98
595 885 8.642432 TGTTGTTAGATGATTAGAGGGACATAG 58.358 37.037 0.00 0.00 0.00 2.23
596 886 8.547481 TGTTGTTAGATGATTAGAGGGACATA 57.453 34.615 0.00 0.00 0.00 2.29
597 887 7.437713 TGTTGTTAGATGATTAGAGGGACAT 57.562 36.000 0.00 0.00 0.00 3.06
598 888 6.867519 TGTTGTTAGATGATTAGAGGGACA 57.132 37.500 0.00 0.00 0.00 4.02
601 891 9.784531 ACAATATGTTGTTAGATGATTAGAGGG 57.215 33.333 1.42 0.00 46.07 4.30
637 927 9.691362 ACGAAAGCAATATGTTGTTAGATTTTT 57.309 25.926 4.00 0.00 37.65 1.94
639 929 9.988350 CTACGAAAGCAATATGTTGTTAGATTT 57.012 29.630 4.00 0.00 37.65 2.17
640 930 9.378551 TCTACGAAAGCAATATGTTGTTAGATT 57.621 29.630 4.00 0.00 37.65 2.40
641 931 8.942338 TCTACGAAAGCAATATGTTGTTAGAT 57.058 30.769 4.00 0.00 37.65 1.98
642 932 8.766000 TTCTACGAAAGCAATATGTTGTTAGA 57.234 30.769 4.00 0.00 37.65 2.10
645 935 9.935682 CATATTCTACGAAAGCAATATGTTGTT 57.064 29.630 4.00 0.00 37.65 2.83
646 936 8.070171 GCATATTCTACGAAAGCAATATGTTGT 58.930 33.333 19.69 0.00 37.62 3.32
647 937 7.266966 CGCATATTCTACGAAAGCAATATGTTG 59.733 37.037 19.69 0.00 37.62 3.33
648 938 7.290842 CGCATATTCTACGAAAGCAATATGTT 58.709 34.615 19.69 0.00 37.62 2.71
649 939 6.618592 GCGCATATTCTACGAAAGCAATATGT 60.619 38.462 0.30 0.00 37.62 2.29
650 940 5.729883 GCGCATATTCTACGAAAGCAATATG 59.270 40.000 0.30 17.50 37.92 1.78
651 941 5.408299 TGCGCATATTCTACGAAAGCAATAT 59.592 36.000 5.66 0.00 0.00 1.28
652 942 4.747605 TGCGCATATTCTACGAAAGCAATA 59.252 37.500 5.66 0.00 0.00 1.90
653 943 3.559655 TGCGCATATTCTACGAAAGCAAT 59.440 39.130 5.66 0.00 0.00 3.56
654 944 2.933260 TGCGCATATTCTACGAAAGCAA 59.067 40.909 5.66 0.00 0.00 3.91
655 945 2.545731 TGCGCATATTCTACGAAAGCA 58.454 42.857 5.66 0.00 0.00 3.91
656 946 3.795561 ATGCGCATATTCTACGAAAGC 57.204 42.857 24.02 0.00 0.00 3.51
657 947 6.191661 TCAAAATGCGCATATTCTACGAAAG 58.808 36.000 25.61 3.74 0.00 2.62
658 948 6.112994 TCAAAATGCGCATATTCTACGAAA 57.887 33.333 25.61 0.00 0.00 3.46
663 953 5.122519 TGGACTCAAAATGCGCATATTCTA 58.877 37.500 25.61 6.76 0.00 2.10
665 955 4.291540 TGGACTCAAAATGCGCATATTC 57.708 40.909 25.61 11.31 0.00 1.75
691 981 3.591835 CCTGGTTTTGCGCCGTGT 61.592 61.111 4.18 0.00 0.00 4.49
712 1002 3.124921 GGCTTGCCGTGCACGTAT 61.125 61.111 34.81 0.00 38.71 3.06
732 1022 4.744631 GCGTTGGAAAATCAGAACATGTTT 59.255 37.500 13.36 0.00 0.00 2.83
737 1027 1.265635 CGGCGTTGGAAAATCAGAACA 59.734 47.619 0.00 0.00 0.00 3.18
885 1175 4.593864 GGGAGCGGCTCGTCCATC 62.594 72.222 22.63 8.37 34.14 3.51
1005 1300 2.752358 CAGAAGCAGCTCCACCCA 59.248 61.111 0.00 0.00 0.00 4.51
1218 1513 9.656323 AGGGATTCATACAAGTGAATACTACTA 57.344 33.333 10.64 0.00 46.02 1.82
1239 1534 9.676861 GTAGTAACCAACAAATTAAGTAGGGAT 57.323 33.333 7.94 1.57 0.00 3.85
1387 1691 6.252599 ACAGGGAAGTGAAATCTGCATATA 57.747 37.500 0.00 0.00 0.00 0.86
1388 1692 5.121380 ACAGGGAAGTGAAATCTGCATAT 57.879 39.130 0.00 0.00 0.00 1.78
1408 1712 8.720562 CACTGTGTTCATTCAAGAATATGTACA 58.279 33.333 0.00 0.00 32.11 2.90
1481 1786 1.927174 GCCACTACGACAAGCTATGTG 59.073 52.381 6.31 0.00 44.12 3.21
1501 1806 1.079503 GCGCAAGTAACAAGAGGGAG 58.920 55.000 0.30 0.00 41.68 4.30
1503 1808 1.197721 CAAGCGCAAGTAACAAGAGGG 59.802 52.381 11.47 0.00 41.68 4.30
1535 1840 1.334869 GTAAAAGCATGGCGATCCTGG 59.665 52.381 0.00 0.00 0.00 4.45
1536 1841 2.292267 AGTAAAAGCATGGCGATCCTG 58.708 47.619 0.00 0.00 0.00 3.86
1543 1848 2.675032 GCCTTCCAAGTAAAAGCATGGC 60.675 50.000 0.00 0.00 32.87 4.40
1582 1887 0.103208 CCTTTGAGGCTACGATCGCT 59.897 55.000 16.60 3.50 0.00 4.93
1703 2009 4.664150 AAAAGTCAAAAATCGAGCCCAA 57.336 36.364 0.00 0.00 0.00 4.12
1704 2010 4.142049 ACAAAAAGTCAAAAATCGAGCCCA 60.142 37.500 0.00 0.00 0.00 5.36
1707 2013 6.177822 CACAACAAAAAGTCAAAAATCGAGC 58.822 36.000 0.00 0.00 0.00 5.03
1712 2018 5.350091 CCCGACACAACAAAAAGTCAAAAAT 59.650 36.000 0.00 0.00 0.00 1.82
1720 2029 2.535331 CAACCCCGACACAACAAAAAG 58.465 47.619 0.00 0.00 0.00 2.27
1817 2126 9.100895 CAAATATATTTGGCAAAACAAACAACG 57.899 29.630 24.67 0.00 42.51 4.10
1826 2135 7.389884 TCAGCAAAGCAAATATATTTGGCAAAA 59.610 29.630 30.18 15.81 45.44 2.44
1880 2189 3.556423 CCCGTCCTGTAAAGTAGTTGCTT 60.556 47.826 0.00 0.00 0.00 3.91
1950 2259 5.012354 TCCATATATTCCGGAGTTGGGTAAC 59.988 44.000 14.29 0.00 37.06 2.50
2132 2441 4.058817 GGGTGTAATCTAATGGCTTCTCG 58.941 47.826 0.00 0.00 0.00 4.04
2138 2447 3.470645 ACGAGGGTGTAATCTAATGGC 57.529 47.619 0.00 0.00 0.00 4.40
2204 2513 0.242017 GTGATGGCAACCAGAAGCAC 59.758 55.000 0.00 0.00 36.75 4.40
2241 2550 1.283613 TGTAACCACATAGCCAAGGGG 59.716 52.381 0.00 0.00 37.18 4.79
2261 2570 0.476611 AGGGCTTCCTTGGTCCTCTT 60.477 55.000 0.00 0.00 37.72 2.85
2346 2655 4.265893 TGGCATGTACGTTCCACATTAAT 58.734 39.130 1.93 0.00 34.39 1.40
2564 2873 6.881602 AGTATTTCTCTTGTGGATGGAAGAAC 59.118 38.462 0.00 0.00 0.00 3.01
2573 2882 3.244422 ACGGCAAGTATTTCTCTTGTGGA 60.244 43.478 7.35 0.00 42.67 4.02
2702 3011 0.877071 TCCAGTACTCACCGTCGTTC 59.123 55.000 0.00 0.00 0.00 3.95
2705 3014 1.471287 TCAATCCAGTACTCACCGTCG 59.529 52.381 0.00 0.00 0.00 5.12
2732 3041 3.717400 AACTCACGCGTATCATCATCT 57.283 42.857 13.44 0.00 0.00 2.90
2769 3078 3.708890 CATAGAGCTCAGCACTCTTCAG 58.291 50.000 17.77 0.00 41.79 3.02
2798 3107 1.750399 CCCTCCATGAGCCGGTTTG 60.750 63.158 1.90 0.00 0.00 2.93
2825 3134 1.702182 ACACCCACATTGCAATGTCA 58.298 45.000 36.19 0.00 46.10 3.58
2870 3179 3.897505 AGCTTGCAAGTCCAACCTTTATT 59.102 39.130 26.55 0.00 0.00 1.40
2921 3230 0.250234 TGAAATGCTCCCAGTCTCCG 59.750 55.000 0.00 0.00 0.00 4.63
2993 3302 3.402681 CATCCTCCCCCGCTGTGT 61.403 66.667 0.00 0.00 0.00 3.72
3041 3350 0.250124 ACACGATCGCCTTGTTTCCA 60.250 50.000 16.60 0.00 0.00 3.53
3185 3494 2.766263 TGCCGAGATGATCTTGTACCTT 59.234 45.455 8.78 0.00 0.00 3.50
3287 3596 2.048127 GTGTCCACCTCTGACCGC 60.048 66.667 0.00 0.00 31.60 5.68
3344 3653 2.672098 AGACTGTCGAATATGGCCTCT 58.328 47.619 3.32 0.00 0.00 3.69
3414 3723 3.438087 CGCTCATCACCATCCCAATTATC 59.562 47.826 0.00 0.00 0.00 1.75
3419 3728 1.224315 CCGCTCATCACCATCCCAA 59.776 57.895 0.00 0.00 0.00 4.12
3493 3802 3.766591 ACCAACCAACATTCTCAACACAA 59.233 39.130 0.00 0.00 0.00 3.33
3498 3807 3.811083 ACGTACCAACCAACATTCTCAA 58.189 40.909 0.00 0.00 0.00 3.02
3546 3855 2.018355 TACCCAGCACTACAAGTCCA 57.982 50.000 0.00 0.00 0.00 4.02
3601 3920 0.947244 CAGCCAGAGCGACACTTTTT 59.053 50.000 0.00 0.00 46.67 1.94
3602 3921 0.179045 ACAGCCAGAGCGACACTTTT 60.179 50.000 0.00 0.00 46.67 2.27
3683 4005 4.921547 TCTTCAGTGCACGATATCAGTAC 58.078 43.478 12.01 4.58 0.00 2.73
3696 4018 4.154918 CCTTCTGGTTTACATCTTCAGTGC 59.845 45.833 0.00 0.00 0.00 4.40
3707 4029 5.627780 CGCAAACATTTACCTTCTGGTTTAC 59.372 40.000 0.00 0.00 46.05 2.01
3720 4042 2.386249 GTGCCGAAACGCAAACATTTA 58.614 42.857 0.00 0.00 41.30 1.40
3770 4092 3.220276 GCGTTTAATCAGAAGGCGC 57.780 52.632 0.00 0.00 36.75 6.53
3772 4094 2.347661 CGATCGCGTTTAATCAGAAGGC 60.348 50.000 5.77 0.00 35.27 4.35
3773 4095 3.113322 TCGATCGCGTTTAATCAGAAGG 58.887 45.455 11.09 0.00 38.98 3.46
3774 4096 4.497100 GTTCGATCGCGTTTAATCAGAAG 58.503 43.478 11.09 0.00 38.98 2.85
3775 4097 3.001464 CGTTCGATCGCGTTTAATCAGAA 60.001 43.478 11.09 7.25 38.98 3.02
3776 4098 2.528688 CGTTCGATCGCGTTTAATCAGA 59.471 45.455 11.09 1.33 38.98 3.27
3777 4099 2.863673 CGTTCGATCGCGTTTAATCAG 58.136 47.619 11.09 0.00 38.98 2.90
3778 4100 1.006805 GCGTTCGATCGCGTTTAATCA 60.007 47.619 23.34 0.00 46.31 2.57
3779 4101 1.633365 GCGTTCGATCGCGTTTAATC 58.367 50.000 23.34 0.00 46.31 1.75
3780 4102 3.773591 GCGTTCGATCGCGTTTAAT 57.226 47.368 23.34 0.00 46.31 1.40
3788 4110 0.228238 GAAGATGCAGCGTTCGATCG 59.772 55.000 9.36 9.36 0.00 3.69
3789 4111 0.579156 GGAAGATGCAGCGTTCGATC 59.421 55.000 0.00 0.00 0.00 3.69
3790 4112 0.108186 TGGAAGATGCAGCGTTCGAT 60.108 50.000 0.00 0.00 0.00 3.59
3791 4113 0.320334 TTGGAAGATGCAGCGTTCGA 60.320 50.000 0.00 0.00 0.00 3.71
3792 4114 0.516877 TTTGGAAGATGCAGCGTTCG 59.483 50.000 0.00 0.00 0.00 3.95
3793 4115 1.537202 AGTTTGGAAGATGCAGCGTTC 59.463 47.619 0.00 0.89 0.00 3.95
3794 4116 1.267806 CAGTTTGGAAGATGCAGCGTT 59.732 47.619 0.00 0.00 0.00 4.84
3795 4117 0.877071 CAGTTTGGAAGATGCAGCGT 59.123 50.000 0.00 0.00 0.00 5.07
3796 4118 0.455633 GCAGTTTGGAAGATGCAGCG 60.456 55.000 0.00 0.00 38.54 5.18
3797 4119 0.886563 AGCAGTTTGGAAGATGCAGC 59.113 50.000 0.00 0.00 41.14 5.25
3798 4120 1.884579 ACAGCAGTTTGGAAGATGCAG 59.115 47.619 0.00 0.00 41.14 4.41
3799 4121 1.985473 ACAGCAGTTTGGAAGATGCA 58.015 45.000 0.00 0.00 41.14 3.96
3800 4122 5.007136 GTCTATACAGCAGTTTGGAAGATGC 59.993 44.000 0.00 0.00 38.97 3.91
3801 4123 5.233050 CGTCTATACAGCAGTTTGGAAGATG 59.767 44.000 0.00 0.00 0.00 2.90
3802 4124 5.127194 TCGTCTATACAGCAGTTTGGAAGAT 59.873 40.000 0.00 0.00 0.00 2.40
3803 4125 4.461431 TCGTCTATACAGCAGTTTGGAAGA 59.539 41.667 0.00 0.00 0.00 2.87
3804 4126 4.744570 TCGTCTATACAGCAGTTTGGAAG 58.255 43.478 0.00 0.00 0.00 3.46
3805 4127 4.794278 TCGTCTATACAGCAGTTTGGAA 57.206 40.909 0.00 0.00 0.00 3.53
3806 4128 4.441495 CCATCGTCTATACAGCAGTTTGGA 60.441 45.833 0.00 0.00 0.00 3.53
3807 4129 3.804325 CCATCGTCTATACAGCAGTTTGG 59.196 47.826 0.00 0.00 0.00 3.28
3808 4130 4.682787 TCCATCGTCTATACAGCAGTTTG 58.317 43.478 0.00 0.00 0.00 2.93
3809 4131 5.163405 ACATCCATCGTCTATACAGCAGTTT 60.163 40.000 0.00 0.00 0.00 2.66
3810 4132 4.342378 ACATCCATCGTCTATACAGCAGTT 59.658 41.667 0.00 0.00 0.00 3.16
3811 4133 3.891977 ACATCCATCGTCTATACAGCAGT 59.108 43.478 0.00 0.00 0.00 4.40
3812 4134 4.233005 CACATCCATCGTCTATACAGCAG 58.767 47.826 0.00 0.00 0.00 4.24
3813 4135 3.636764 ACACATCCATCGTCTATACAGCA 59.363 43.478 0.00 0.00 0.00 4.41
3814 4136 3.983988 CACACATCCATCGTCTATACAGC 59.016 47.826 0.00 0.00 0.00 4.40
3815 4137 3.983988 GCACACATCCATCGTCTATACAG 59.016 47.826 0.00 0.00 0.00 2.74
3816 4138 3.383185 TGCACACATCCATCGTCTATACA 59.617 43.478 0.00 0.00 0.00 2.29
3817 4139 3.736252 GTGCACACATCCATCGTCTATAC 59.264 47.826 13.17 0.00 0.00 1.47
3818 4140 3.550030 CGTGCACACATCCATCGTCTATA 60.550 47.826 18.64 0.00 0.00 1.31
3819 4141 2.799562 CGTGCACACATCCATCGTCTAT 60.800 50.000 18.64 0.00 0.00 1.98
3820 4142 1.469079 CGTGCACACATCCATCGTCTA 60.469 52.381 18.64 0.00 0.00 2.59
3821 4143 0.737367 CGTGCACACATCCATCGTCT 60.737 55.000 18.64 0.00 0.00 4.18
3822 4144 0.735978 TCGTGCACACATCCATCGTC 60.736 55.000 18.64 0.00 0.00 4.20
3823 4145 1.014044 GTCGTGCACACATCCATCGT 61.014 55.000 18.64 0.00 0.00 3.73
3824 4146 1.013524 TGTCGTGCACACATCCATCG 61.014 55.000 18.64 0.00 0.00 3.84
3825 4147 0.723414 CTGTCGTGCACACATCCATC 59.277 55.000 18.64 0.00 0.00 3.51
3826 4148 0.035317 ACTGTCGTGCACACATCCAT 59.965 50.000 18.64 4.27 0.00 3.41
3827 4149 0.879839 CACTGTCGTGCACACATCCA 60.880 55.000 18.64 4.32 33.82 3.41
3828 4150 1.568612 CCACTGTCGTGCACACATCC 61.569 60.000 18.64 0.00 39.86 3.51
3829 4151 1.568612 CCCACTGTCGTGCACACATC 61.569 60.000 18.64 4.23 39.86 3.06
3830 4152 1.597854 CCCACTGTCGTGCACACAT 60.598 57.895 18.64 7.79 39.86 3.21
3831 4153 2.203001 CCCACTGTCGTGCACACA 60.203 61.111 18.64 17.85 39.86 3.72
3832 4154 2.108157 TCCCACTGTCGTGCACAC 59.892 61.111 18.64 14.25 39.86 3.82
3833 4155 2.108157 GTCCCACTGTCGTGCACA 59.892 61.111 18.64 0.81 39.86 4.57
3834 4156 2.765250 ATCGTCCCACTGTCGTGCAC 62.765 60.000 6.82 6.82 39.86 4.57
3835 4157 2.570284 ATCGTCCCACTGTCGTGCA 61.570 57.895 0.00 0.00 39.86 4.57
3836 4158 2.094659 CATCGTCCCACTGTCGTGC 61.095 63.158 0.00 0.00 39.86 5.34
3837 4159 1.446099 CCATCGTCCCACTGTCGTG 60.446 63.158 0.00 0.00 40.89 4.35
3838 4160 0.970937 ATCCATCGTCCCACTGTCGT 60.971 55.000 0.00 0.00 0.00 4.34
3839 4161 1.029681 TATCCATCGTCCCACTGTCG 58.970 55.000 0.00 0.00 0.00 4.35
3840 4162 3.555168 GGATTATCCATCGTCCCACTGTC 60.555 52.174 6.34 0.00 36.28 3.51
3841 4163 2.368875 GGATTATCCATCGTCCCACTGT 59.631 50.000 6.34 0.00 36.28 3.55
3842 4164 2.368548 TGGATTATCCATCGTCCCACTG 59.631 50.000 10.29 0.00 42.67 3.66
3843 4165 2.689658 TGGATTATCCATCGTCCCACT 58.310 47.619 10.29 0.00 42.67 4.00
3853 4175 4.578871 CATATCAACGGCTGGATTATCCA 58.421 43.478 13.85 13.85 45.98 3.41
3854 4176 3.375299 GCATATCAACGGCTGGATTATCC 59.625 47.826 3.91 3.91 36.96 2.59
3855 4177 3.062639 CGCATATCAACGGCTGGATTATC 59.937 47.826 0.00 0.00 0.00 1.75
3856 4178 3.002791 CGCATATCAACGGCTGGATTAT 58.997 45.455 0.00 0.00 0.00 1.28
3857 4179 2.412870 CGCATATCAACGGCTGGATTA 58.587 47.619 0.00 0.00 0.00 1.75
3858 4180 1.229428 CGCATATCAACGGCTGGATT 58.771 50.000 0.00 0.00 0.00 3.01
3859 4181 1.230635 GCGCATATCAACGGCTGGAT 61.231 55.000 0.30 0.00 0.00 3.41
3860 4182 1.887242 GCGCATATCAACGGCTGGA 60.887 57.895 0.30 0.00 0.00 3.86
3861 4183 1.889105 AGCGCATATCAACGGCTGG 60.889 57.895 11.47 0.00 31.74 4.85
3862 4184 1.277739 CAGCGCATATCAACGGCTG 59.722 57.895 11.47 0.00 44.19 4.85
3863 4185 1.889105 CCAGCGCATATCAACGGCT 60.889 57.895 11.47 0.00 0.00 5.52
3864 4186 1.230635 ATCCAGCGCATATCAACGGC 61.231 55.000 11.47 0.00 0.00 5.68
3865 4187 1.995484 CTATCCAGCGCATATCAACGG 59.005 52.381 11.47 0.00 0.00 4.44
3866 4188 2.677199 ACTATCCAGCGCATATCAACG 58.323 47.619 11.47 0.00 0.00 4.10
3867 4189 4.033358 GCATACTATCCAGCGCATATCAAC 59.967 45.833 11.47 0.00 0.00 3.18
3868 4190 4.183865 GCATACTATCCAGCGCATATCAA 58.816 43.478 11.47 0.00 0.00 2.57
3869 4191 3.195396 TGCATACTATCCAGCGCATATCA 59.805 43.478 11.47 0.00 0.00 2.15
3870 4192 3.785486 TGCATACTATCCAGCGCATATC 58.215 45.455 11.47 0.00 0.00 1.63
3871 4193 3.893326 TGCATACTATCCAGCGCATAT 57.107 42.857 11.47 1.79 0.00 1.78
3872 4194 3.524541 CATGCATACTATCCAGCGCATA 58.475 45.455 11.47 0.00 35.09 3.14
3873 4195 2.353323 CATGCATACTATCCAGCGCAT 58.647 47.619 11.47 0.00 36.45 4.73
3874 4196 1.608801 CCATGCATACTATCCAGCGCA 60.609 52.381 11.47 0.00 31.62 6.09
3875 4197 1.081892 CCATGCATACTATCCAGCGC 58.918 55.000 0.00 0.00 0.00 5.92
3876 4198 2.341257 GTCCATGCATACTATCCAGCG 58.659 52.381 0.00 0.00 0.00 5.18
3877 4199 2.341257 CGTCCATGCATACTATCCAGC 58.659 52.381 0.00 0.00 0.00 4.85
3878 4200 2.932622 GCCGTCCATGCATACTATCCAG 60.933 54.545 0.00 0.00 0.00 3.86
3879 4201 1.001974 GCCGTCCATGCATACTATCCA 59.998 52.381 0.00 0.00 0.00 3.41
3880 4202 1.276421 AGCCGTCCATGCATACTATCC 59.724 52.381 0.00 0.00 0.00 2.59
3881 4203 2.738846 CAAGCCGTCCATGCATACTATC 59.261 50.000 0.00 0.00 0.00 2.08
3882 4204 2.368548 TCAAGCCGTCCATGCATACTAT 59.631 45.455 0.00 0.00 0.00 2.12
3883 4205 1.760029 TCAAGCCGTCCATGCATACTA 59.240 47.619 0.00 0.00 0.00 1.82
3884 4206 0.541392 TCAAGCCGTCCATGCATACT 59.459 50.000 0.00 0.00 0.00 2.12
3885 4207 0.657840 GTCAAGCCGTCCATGCATAC 59.342 55.000 0.00 0.00 0.00 2.39
3886 4208 0.251634 TGTCAAGCCGTCCATGCATA 59.748 50.000 0.00 0.00 0.00 3.14
3887 4209 0.394762 ATGTCAAGCCGTCCATGCAT 60.395 50.000 0.00 0.00 0.00 3.96
3888 4210 1.002257 ATGTCAAGCCGTCCATGCA 60.002 52.632 0.00 0.00 0.00 3.96
3889 4211 1.308069 ACATGTCAAGCCGTCCATGC 61.308 55.000 0.00 0.00 38.56 4.06
3890 4212 0.448990 CACATGTCAAGCCGTCCATG 59.551 55.000 0.00 0.00 40.34 3.66
3891 4213 1.308069 GCACATGTCAAGCCGTCCAT 61.308 55.000 0.00 0.00 0.00 3.41
3892 4214 1.965930 GCACATGTCAAGCCGTCCA 60.966 57.895 0.00 0.00 0.00 4.02
3893 4215 1.672356 AGCACATGTCAAGCCGTCC 60.672 57.895 0.00 0.00 0.00 4.79
3894 4216 1.499056 CAGCACATGTCAAGCCGTC 59.501 57.895 0.00 0.00 0.00 4.79
3895 4217 2.620112 GCAGCACATGTCAAGCCGT 61.620 57.895 0.00 0.00 0.00 5.68
3896 4218 2.177531 GCAGCACATGTCAAGCCG 59.822 61.111 0.00 0.00 0.00 5.52
3897 4219 2.570181 GGCAGCACATGTCAAGCC 59.430 61.111 14.14 14.14 32.08 4.35
3898 4220 2.177531 CGGCAGCACATGTCAAGC 59.822 61.111 0.00 0.00 30.75 4.01
3899 4221 1.208358 CACGGCAGCACATGTCAAG 59.792 57.895 0.00 0.00 30.75 3.02
3900 4222 2.906939 GCACGGCAGCACATGTCAA 61.907 57.895 0.00 0.00 30.75 3.18
3901 4223 3.356267 GCACGGCAGCACATGTCA 61.356 61.111 0.00 0.00 30.75 3.58
3902 4224 3.356267 TGCACGGCAGCACATGTC 61.356 61.111 0.00 0.00 40.11 3.06
3908 4230 3.279116 GACTTGTGCACGGCAGCA 61.279 61.111 13.13 0.00 40.08 4.41
3909 4231 4.374702 CGACTTGTGCACGGCAGC 62.375 66.667 13.13 0.00 40.08 5.25
3910 4232 2.943345 GACGACTTGTGCACGGCAG 61.943 63.158 13.13 10.48 40.08 4.85
3911 4233 2.964925 GACGACTTGTGCACGGCA 60.965 61.111 13.13 0.00 35.00 5.69
3912 4234 3.712881 GGACGACTTGTGCACGGC 61.713 66.667 13.13 0.84 39.04 5.68
3913 4235 2.279851 TGGACGACTTGTGCACGG 60.280 61.111 13.13 10.15 44.74 4.94
3933 4255 1.453719 CTGCTATACACACGACGACG 58.546 55.000 5.58 5.58 45.75 5.12
3934 4256 1.189403 GCTGCTATACACACGACGAC 58.811 55.000 0.00 0.00 0.00 4.34
3935 4257 0.806241 TGCTGCTATACACACGACGA 59.194 50.000 0.00 0.00 0.00 4.20
3936 4258 1.840181 ATGCTGCTATACACACGACG 58.160 50.000 0.00 0.00 0.00 5.12
3937 4259 2.726760 GCTATGCTGCTATACACACGAC 59.273 50.000 0.00 0.00 0.00 4.34
3938 4260 2.360801 TGCTATGCTGCTATACACACGA 59.639 45.455 0.00 0.00 0.00 4.35
3939 4261 2.728318 CTGCTATGCTGCTATACACACG 59.272 50.000 0.00 0.00 0.00 4.49
3959 4281 0.942962 GAATAAGATGCAGCAGCGCT 59.057 50.000 2.64 2.64 46.23 5.92
3960 4282 0.383983 CGAATAAGATGCAGCAGCGC 60.384 55.000 4.07 0.00 46.23 5.92
3961 4283 0.383983 GCGAATAAGATGCAGCAGCG 60.384 55.000 4.07 1.01 46.23 5.18
3962 4284 0.040603 GGCGAATAAGATGCAGCAGC 60.041 55.000 4.07 1.15 42.57 5.25
3963 4285 0.590195 GGGCGAATAAGATGCAGCAG 59.410 55.000 4.07 0.00 0.00 4.24
3964 4286 0.107263 TGGGCGAATAAGATGCAGCA 60.107 50.000 4.07 0.00 0.00 4.41
3965 4287 0.590195 CTGGGCGAATAAGATGCAGC 59.410 55.000 0.00 0.00 0.00 5.25
3966 4288 1.233019 CCTGGGCGAATAAGATGCAG 58.767 55.000 0.00 0.00 0.00 4.41
3967 4289 0.179020 CCCTGGGCGAATAAGATGCA 60.179 55.000 0.00 0.00 0.00 3.96
3968 4290 0.179018 ACCCTGGGCGAATAAGATGC 60.179 55.000 14.08 0.00 0.00 3.91
3969 4291 3.139077 GTTACCCTGGGCGAATAAGATG 58.861 50.000 14.08 0.00 0.00 2.90
3970 4292 2.224209 CGTTACCCTGGGCGAATAAGAT 60.224 50.000 14.08 0.00 0.00 2.40
3971 4293 1.137479 CGTTACCCTGGGCGAATAAGA 59.863 52.381 14.08 0.00 0.00 2.10
3972 4294 1.137479 TCGTTACCCTGGGCGAATAAG 59.863 52.381 14.08 4.05 0.00 1.73
3973 4295 1.134729 GTCGTTACCCTGGGCGAATAA 60.135 52.381 14.08 0.51 35.08 1.40
3974 4296 0.461135 GTCGTTACCCTGGGCGAATA 59.539 55.000 14.08 0.00 35.08 1.75
3975 4297 1.219935 GTCGTTACCCTGGGCGAAT 59.780 57.895 14.08 0.00 35.08 3.34
3999 4322 1.398692 GTGGGCCAAGAAAAGTCACA 58.601 50.000 8.40 0.00 0.00 3.58
4038 4361 1.270785 GGCCACATTTGTTTTGGGAGG 60.271 52.381 0.00 0.00 0.00 4.30
4048 4371 0.673437 AAACGAGTGGGCCACATTTG 59.327 50.000 36.28 22.99 36.74 2.32
4064 4387 3.858238 GGAGACGATACACTGTAGCAAAC 59.142 47.826 5.35 0.00 0.00 2.93
4072 4395 2.879646 GGAGGTAGGAGACGATACACTG 59.120 54.545 0.00 0.00 0.00 3.66
4077 4400 4.205587 GTTTCTGGAGGTAGGAGACGATA 58.794 47.826 0.00 0.00 0.00 2.92
4097 4420 1.134670 GGAGCCATCTACAGAAGCGTT 60.135 52.381 0.00 0.00 34.00 4.84
4098 4421 0.461961 GGAGCCATCTACAGAAGCGT 59.538 55.000 0.00 0.00 34.00 5.07
4104 4427 1.227380 GCGGTGGAGCCATCTACAG 60.227 63.158 0.00 0.00 38.61 2.74
4105 4428 2.900273 GCGGTGGAGCCATCTACA 59.100 61.111 0.00 0.00 38.61 2.74
4107 4430 2.758327 ACGCGGTGGAGCCATCTA 60.758 61.111 12.47 0.00 36.97 1.98
4112 4436 1.862602 AAAAATCACGCGGTGGAGCC 61.863 55.000 12.47 0.00 33.87 4.70
4149 4474 1.202794 TGCAGGAGAGTTTGTGCATCA 60.203 47.619 0.00 0.00 40.93 3.07
4166 4491 2.594303 CCAAGCACCTCCGTTGCA 60.594 61.111 0.00 0.00 0.00 4.08
4251 4577 2.252535 TGGTCATCCATGGAGACTCA 57.747 50.000 28.34 23.63 39.03 3.41
4271 4597 1.971167 GGCATCACAACCTTCGCCA 60.971 57.895 0.00 0.00 39.38 5.69
4273 4599 1.503542 CTGGCATCACAACCTTCGC 59.496 57.895 0.00 0.00 0.00 4.70
4274 4600 1.503542 GCTGGCATCACAACCTTCG 59.496 57.895 0.00 0.00 0.00 3.79
4283 4609 2.026945 TTATCCGCTCGCTGGCATCA 62.027 55.000 0.00 0.00 0.00 3.07
4285 4611 1.595382 GTTATCCGCTCGCTGGCAT 60.595 57.895 0.00 0.00 0.00 4.40
4374 4706 2.609459 CCAACTCGCTTATTGGCTGTAG 59.391 50.000 0.00 0.00 39.07 2.74
4376 4708 1.003118 TCCAACTCGCTTATTGGCTGT 59.997 47.619 5.16 0.00 44.34 4.40
4379 4711 2.227865 TGTTTCCAACTCGCTTATTGGC 59.772 45.455 5.16 0.00 44.34 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.