Multiple sequence alignment - TraesCS5A01G512200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G512200 chr5A 100.000 5163 0 0 1 5163 675964952 675970114 0.000000e+00 9535.0
1 TraesCS5A01G512200 chr5A 89.547 794 69 10 3 787 550799860 550799072 0.000000e+00 994.0
2 TraesCS5A01G512200 chr5A 94.435 575 31 1 4590 5163 12220319 12220893 0.000000e+00 883.0
3 TraesCS5A01G512200 chr5A 89.583 528 26 11 4084 4608 12219806 12220307 1.210000e-180 643.0
4 TraesCS5A01G512200 chr4B 93.509 1556 75 11 2552 4095 636800550 636802091 0.000000e+00 2290.0
5 TraesCS5A01G512200 chr4B 94.095 1050 60 2 1421 2468 636799435 636800484 0.000000e+00 1594.0
6 TraesCS5A01G512200 chr4B 89.362 564 26 17 808 1365 636798893 636799428 0.000000e+00 678.0
7 TraesCS5A01G512200 chr4B 91.186 295 26 0 3517 3811 329806271 329806565 8.050000e-108 401.0
8 TraesCS5A01G512200 chr1A 91.814 794 56 7 2 787 464845145 464844353 0.000000e+00 1098.0
9 TraesCS5A01G512200 chr1A 98.502 601 9 0 4563 5163 497490609 497490009 0.000000e+00 1061.0
10 TraesCS5A01G512200 chr1A 97.590 415 8 2 4102 4515 497491015 497490602 0.000000e+00 710.0
11 TraesCS5A01G512200 chr6D 89.533 793 70 8 2 785 256166148 256166936 0.000000e+00 992.0
12 TraesCS5A01G512200 chr3B 89.111 799 76 7 2 791 463472796 463472000 0.000000e+00 983.0
13 TraesCS5A01G512200 chr3D 94.754 629 24 7 4095 4720 45554794 45555416 0.000000e+00 970.0
14 TraesCS5A01G512200 chr3D 88.184 804 83 7 2 796 13635681 13636481 0.000000e+00 948.0
15 TraesCS5A01G512200 chr3D 86.951 797 93 7 2 788 435162512 435163307 0.000000e+00 885.0
16 TraesCS5A01G512200 chr3D 96.854 445 14 0 4719 5163 45555541 45555985 0.000000e+00 745.0
17 TraesCS5A01G512200 chr1D 88.317 796 80 7 2 785 31414891 31414097 0.000000e+00 942.0
18 TraesCS5A01G512200 chr5D 88.206 797 79 11 2 788 521406385 521405594 0.000000e+00 937.0
19 TraesCS5A01G512200 chr6B 88.035 794 85 6 2 787 710008751 710009542 0.000000e+00 931.0
20 TraesCS5A01G512200 chr7D 92.197 628 21 7 4096 4720 86806750 86806148 0.000000e+00 863.0
21 TraesCS5A01G512200 chr7D 97.309 446 11 1 4719 5163 86806023 86805578 0.000000e+00 756.0
22 TraesCS5A01G512200 chrUn 81.522 92 10 5 4106 4191 297890977 297891067 9.280000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G512200 chr5A 675964952 675970114 5162 False 9535.000000 9535 100.000 1 5163 1 chr5A.!!$F1 5162
1 TraesCS5A01G512200 chr5A 550799072 550799860 788 True 994.000000 994 89.547 3 787 1 chr5A.!!$R1 784
2 TraesCS5A01G512200 chr5A 12219806 12220893 1087 False 763.000000 883 92.009 4084 5163 2 chr5A.!!$F2 1079
3 TraesCS5A01G512200 chr4B 636798893 636802091 3198 False 1520.666667 2290 92.322 808 4095 3 chr4B.!!$F2 3287
4 TraesCS5A01G512200 chr1A 464844353 464845145 792 True 1098.000000 1098 91.814 2 787 1 chr1A.!!$R1 785
5 TraesCS5A01G512200 chr1A 497490009 497491015 1006 True 885.500000 1061 98.046 4102 5163 2 chr1A.!!$R2 1061
6 TraesCS5A01G512200 chr6D 256166148 256166936 788 False 992.000000 992 89.533 2 785 1 chr6D.!!$F1 783
7 TraesCS5A01G512200 chr3B 463472000 463472796 796 True 983.000000 983 89.111 2 791 1 chr3B.!!$R1 789
8 TraesCS5A01G512200 chr3D 13635681 13636481 800 False 948.000000 948 88.184 2 796 1 chr3D.!!$F1 794
9 TraesCS5A01G512200 chr3D 435162512 435163307 795 False 885.000000 885 86.951 2 788 1 chr3D.!!$F2 786
10 TraesCS5A01G512200 chr3D 45554794 45555985 1191 False 857.500000 970 95.804 4095 5163 2 chr3D.!!$F3 1068
11 TraesCS5A01G512200 chr1D 31414097 31414891 794 True 942.000000 942 88.317 2 785 1 chr1D.!!$R1 783
12 TraesCS5A01G512200 chr5D 521405594 521406385 791 True 937.000000 937 88.206 2 788 1 chr5D.!!$R1 786
13 TraesCS5A01G512200 chr6B 710008751 710009542 791 False 931.000000 931 88.035 2 787 1 chr6B.!!$F1 785
14 TraesCS5A01G512200 chr7D 86805578 86806750 1172 True 809.500000 863 94.753 4096 5163 2 chr7D.!!$R1 1067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
130 131 0.036294 TCGAGGAGAGAAGAGCACGA 60.036 55.0 0.00 0.0 0.00 4.35 F
1218 1236 0.031721 ACACGTTGTTCCTCCTCGTC 59.968 55.0 0.00 0.0 32.47 4.20 F
1937 1957 0.247736 AGAACAGCATGGACGTCTCC 59.752 55.0 16.46 0.0 43.62 3.71 F
2507 2527 0.250510 GGATGGAGAAATCCTCGGGC 60.251 60.0 0.00 0.0 42.57 6.13 F
3834 3854 0.392461 ACCGGCGCACATTTGTATCT 60.392 50.0 10.83 0.0 0.00 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1360 0.248702 TTTTCTTCAACAACGCCCGC 60.249 50.000 0.0 0.0 0.00 6.13 R
2214 2234 0.108281 GTGGCGAAGTAGAAGGGGAC 60.108 60.000 0.0 0.0 0.00 4.46 R
2981 3001 0.803768 CCACGTCGATCTGCTGGAAG 60.804 60.000 0.0 0.0 0.00 3.46 R
3944 3973 1.069296 CCACACAGCAATACAACGGTG 60.069 52.381 0.0 0.0 37.88 4.94 R
4735 4925 0.743688 CAGAGGAGAGGACCATCACG 59.256 60.000 0.0 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.194062 GAGAAGAAGGCGAATGAGAAGG 58.806 50.000 0.00 0.00 0.00 3.46
130 131 0.036294 TCGAGGAGAGAAGAGCACGA 60.036 55.000 0.00 0.00 0.00 4.35
148 149 0.239879 GAGCCGCCGAAAACAAATCA 59.760 50.000 0.00 0.00 0.00 2.57
302 311 0.669625 GTGCTACAGTTCCGGTGTCC 60.670 60.000 0.00 0.00 0.00 4.02
316 325 1.344438 GGTGTCCGCTCCATATGATGA 59.656 52.381 3.65 0.00 0.00 2.92
317 326 2.027745 GGTGTCCGCTCCATATGATGAT 60.028 50.000 3.65 0.00 0.00 2.45
339 348 0.036858 TGTGGATGATTTCGGTGCGA 60.037 50.000 0.00 0.00 0.00 5.10
415 426 2.813474 CGATGGCGCGGAGTGAAA 60.813 61.111 8.83 0.00 43.07 2.69
418 429 0.451783 GATGGCGCGGAGTGAAAATT 59.548 50.000 8.83 0.00 43.07 1.82
440 454 5.556006 TGATCAAGATGATGCCAGACATA 57.444 39.130 0.00 0.00 39.84 2.29
492 506 3.377172 GCGTTAGCCATAATGAACTTGGT 59.623 43.478 0.00 0.00 37.42 3.67
501 515 9.474313 AGCCATAATGAACTTGGTTTCTATTTA 57.526 29.630 0.00 0.00 32.90 1.40
533 548 8.785329 AAACTATTTGTGTGGTTTGAATTTGT 57.215 26.923 0.00 0.00 32.50 2.83
565 580 5.414144 TGTGAAATCCTATGTCAAATGCGAA 59.586 36.000 0.00 0.00 0.00 4.70
636 652 1.213094 CGCATAGCCGACCCGTAAAG 61.213 60.000 0.00 0.00 0.00 1.85
659 675 9.701098 AAAGAAACATATTCCGCGAATATACTA 57.299 29.630 8.23 0.00 41.52 1.82
781 798 1.889530 GCGGGGTCTGCTAGAGTTGT 61.890 60.000 0.00 0.00 0.00 3.32
788 805 4.463186 GGGTCTGCTAGAGTTGTTCTTAGA 59.537 45.833 0.00 0.00 37.36 2.10
792 809 6.529829 GTCTGCTAGAGTTGTTCTTAGATGTG 59.470 42.308 0.00 0.00 37.36 3.21
794 811 4.568760 GCTAGAGTTGTTCTTAGATGTGCC 59.431 45.833 0.00 0.00 37.36 5.01
795 812 4.899352 AGAGTTGTTCTTAGATGTGCCT 57.101 40.909 0.00 0.00 29.61 4.75
796 813 5.234466 AGAGTTGTTCTTAGATGTGCCTT 57.766 39.130 0.00 0.00 29.61 4.35
797 814 6.360370 AGAGTTGTTCTTAGATGTGCCTTA 57.640 37.500 0.00 0.00 29.61 2.69
798 815 6.402222 AGAGTTGTTCTTAGATGTGCCTTAG 58.598 40.000 0.00 0.00 29.61 2.18
799 816 6.211584 AGAGTTGTTCTTAGATGTGCCTTAGA 59.788 38.462 0.00 0.00 29.61 2.10
800 817 6.166982 AGTTGTTCTTAGATGTGCCTTAGAC 58.833 40.000 0.00 0.00 0.00 2.59
801 818 5.738619 TGTTCTTAGATGTGCCTTAGACA 57.261 39.130 0.00 0.00 0.00 3.41
802 819 6.109156 TGTTCTTAGATGTGCCTTAGACAA 57.891 37.500 0.00 0.00 0.00 3.18
803 820 6.530120 TGTTCTTAGATGTGCCTTAGACAAA 58.470 36.000 0.00 0.00 0.00 2.83
804 821 6.426937 TGTTCTTAGATGTGCCTTAGACAAAC 59.573 38.462 0.00 0.00 0.00 2.93
805 822 5.488341 TCTTAGATGTGCCTTAGACAAACC 58.512 41.667 0.00 0.00 0.00 3.27
806 823 3.073274 AGATGTGCCTTAGACAAACCC 57.927 47.619 0.00 0.00 0.00 4.11
859 876 3.950395 GGGTGAGCAAATGAGATTTAGCT 59.050 43.478 0.00 0.00 38.43 3.32
862 879 6.264067 GGGTGAGCAAATGAGATTTAGCTAAT 59.736 38.462 7.08 0.00 37.03 1.73
881 898 8.396272 AGCTAATTTTACAACACACTCTCAAT 57.604 30.769 0.00 0.00 0.00 2.57
890 907 4.392921 ACACACTCTCAATCCTATTCCG 57.607 45.455 0.00 0.00 0.00 4.30
901 918 3.413300 TATTCCGGGGGCGCCTTT 61.413 61.111 28.56 5.98 0.00 3.11
995 1013 3.857854 CTCCACGAGCGCATGCAC 61.858 66.667 19.57 8.32 46.23 4.57
997 1015 3.425713 CCACGAGCGCATGCACTT 61.426 61.111 19.57 1.36 46.23 3.16
998 1016 2.557805 CACGAGCGCATGCACTTT 59.442 55.556 19.57 1.54 46.23 2.66
999 1017 1.510623 CACGAGCGCATGCACTTTC 60.511 57.895 19.57 7.97 46.23 2.62
1000 1018 2.276244 CGAGCGCATGCACTTTCG 60.276 61.111 19.57 15.79 46.23 3.46
1018 1036 1.587043 CGCAAGGAGACTCGTCAGGA 61.587 60.000 0.00 0.00 42.68 3.86
1025 1043 3.358076 GACTCGTCAGGAAGGCCCG 62.358 68.421 0.00 0.00 40.87 6.13
1064 1082 3.941836 GCTCGGCAGCGGCAATAC 61.942 66.667 11.88 0.00 43.71 1.89
1065 1083 3.630148 CTCGGCAGCGGCAATACG 61.630 66.667 11.88 4.96 43.71 3.06
1074 1092 2.895372 GGCAATACGGGCGACAGG 60.895 66.667 0.00 0.00 0.00 4.00
1075 1093 3.573491 GCAATACGGGCGACAGGC 61.573 66.667 0.00 0.00 42.96 4.85
1109 1127 3.450115 GGCCGACTAGTGCCGAGT 61.450 66.667 8.37 0.00 38.00 4.18
1111 1129 2.202623 CCGACTAGTGCCGAGTGC 60.203 66.667 0.00 0.00 41.77 4.40
1112 1130 2.202623 CGACTAGTGCCGAGTGCC 60.203 66.667 0.00 0.00 40.16 5.01
1113 1131 2.202623 GACTAGTGCCGAGTGCCG 60.203 66.667 0.00 0.00 40.16 5.69
1114 1132 2.675423 ACTAGTGCCGAGTGCCGA 60.675 61.111 0.00 0.00 41.76 5.54
1115 1133 2.103143 CTAGTGCCGAGTGCCGAG 59.897 66.667 0.00 0.00 41.76 4.63
1116 1134 4.129737 TAGTGCCGAGTGCCGAGC 62.130 66.667 0.00 0.00 41.76 5.03
1158 1176 1.004918 CCTTTGCTCGGAGGACGTT 60.005 57.895 7.20 0.00 44.69 3.99
1218 1236 0.031721 ACACGTTGTTCCTCCTCGTC 59.968 55.000 0.00 0.00 32.47 4.20
1272 1290 1.738099 CTTCCACTCGTTGCTCCGG 60.738 63.158 0.00 0.00 0.00 5.14
1323 1341 6.002704 GCAGATCCTGGTAATCAATCAATCT 58.997 40.000 0.00 0.00 31.21 2.40
1329 1347 6.599244 TCCTGGTAATCAATCAATCTTGACAC 59.401 38.462 0.00 0.00 40.49 3.67
1331 1349 7.121759 CCTGGTAATCAATCAATCTTGACACTT 59.878 37.037 0.00 0.00 40.49 3.16
1339 1357 8.950210 TCAATCAATCTTGACACTTATTTCTCC 58.050 33.333 0.00 0.00 40.49 3.71
1341 1359 5.874810 TCAATCTTGACACTTATTTCTCCGG 59.125 40.000 0.00 0.00 31.01 5.14
1342 1360 4.202245 TCTTGACACTTATTTCTCCGGG 57.798 45.455 0.00 0.00 0.00 5.73
1347 1365 1.892391 CTTATTTCTCCGGGCGGGC 60.892 63.158 0.00 0.00 34.94 6.13
1348 1366 3.743534 TTATTTCTCCGGGCGGGCG 62.744 63.158 0.00 0.00 34.94 6.13
1365 1383 2.035321 GGGCGTTGTTGAAGAAAATGGA 59.965 45.455 0.00 0.00 0.00 3.41
1366 1384 3.308530 GGCGTTGTTGAAGAAAATGGAG 58.691 45.455 0.00 0.00 0.00 3.86
1367 1385 3.308530 GCGTTGTTGAAGAAAATGGAGG 58.691 45.455 0.00 0.00 0.00 4.30
1369 1387 3.568007 CGTTGTTGAAGAAAATGGAGGGA 59.432 43.478 0.00 0.00 0.00 4.20
1371 1389 3.157087 TGTTGAAGAAAATGGAGGGAGC 58.843 45.455 0.00 0.00 0.00 4.70
1372 1390 2.113860 TGAAGAAAATGGAGGGAGCG 57.886 50.000 0.00 0.00 0.00 5.03
1373 1391 1.351017 TGAAGAAAATGGAGGGAGCGT 59.649 47.619 0.00 0.00 0.00 5.07
1374 1392 2.010497 GAAGAAAATGGAGGGAGCGTC 58.990 52.381 0.00 0.00 0.00 5.19
1375 1393 0.984230 AGAAAATGGAGGGAGCGTCA 59.016 50.000 0.00 0.00 0.00 4.35
1376 1394 1.561542 AGAAAATGGAGGGAGCGTCAT 59.438 47.619 0.00 0.00 0.00 3.06
1377 1395 1.672881 GAAAATGGAGGGAGCGTCATG 59.327 52.381 0.00 0.00 0.00 3.07
1378 1396 0.749454 AAATGGAGGGAGCGTCATGC 60.749 55.000 0.00 0.00 46.98 4.06
1387 1405 2.175078 GCGTCATGCAGTGCAGTG 59.825 61.111 24.20 17.56 43.65 3.66
1388 1406 2.175078 CGTCATGCAGTGCAGTGC 59.825 61.111 34.65 34.65 43.65 4.40
1397 1415 1.372683 AGTGCAGTGCAGTGTAGGG 59.627 57.895 24.51 0.00 41.01 3.53
1398 1416 1.071471 GTGCAGTGCAGTGTAGGGT 59.929 57.895 20.42 0.00 40.08 4.34
1399 1417 0.951040 GTGCAGTGCAGTGTAGGGTC 60.951 60.000 20.42 5.59 40.08 4.46
1400 1418 1.371183 GCAGTGCAGTGTAGGGTCA 59.629 57.895 22.22 0.00 0.00 4.02
1401 1419 0.250295 GCAGTGCAGTGTAGGGTCAA 60.250 55.000 22.22 0.00 0.00 3.18
1402 1420 1.611673 GCAGTGCAGTGTAGGGTCAAT 60.612 52.381 22.22 0.00 0.00 2.57
1403 1421 2.783135 CAGTGCAGTGTAGGGTCAATT 58.217 47.619 13.67 0.00 0.00 2.32
1404 1422 3.868369 GCAGTGCAGTGTAGGGTCAATTA 60.868 47.826 22.22 0.00 0.00 1.40
1405 1423 4.323417 CAGTGCAGTGTAGGGTCAATTAA 58.677 43.478 13.67 0.00 0.00 1.40
1406 1424 4.154195 CAGTGCAGTGTAGGGTCAATTAAC 59.846 45.833 13.67 0.00 0.00 2.01
1407 1425 4.041691 AGTGCAGTGTAGGGTCAATTAACT 59.958 41.667 0.00 0.00 0.00 2.24
1408 1426 5.247564 AGTGCAGTGTAGGGTCAATTAACTA 59.752 40.000 0.00 0.00 0.00 2.24
1409 1427 5.581085 GTGCAGTGTAGGGTCAATTAACTAG 59.419 44.000 0.00 0.00 0.00 2.57
1410 1428 4.571176 GCAGTGTAGGGTCAATTAACTAGC 59.429 45.833 0.00 0.00 0.00 3.42
1411 1429 5.627040 GCAGTGTAGGGTCAATTAACTAGCT 60.627 44.000 0.00 0.00 0.00 3.32
1412 1430 5.812642 CAGTGTAGGGTCAATTAACTAGCTG 59.187 44.000 0.00 0.00 0.00 4.24
1413 1431 5.104900 AGTGTAGGGTCAATTAACTAGCTGG 60.105 44.000 0.00 0.00 0.00 4.85
1414 1432 3.283259 AGGGTCAATTAACTAGCTGGC 57.717 47.619 0.00 0.00 0.00 4.85
1415 1433 2.576191 AGGGTCAATTAACTAGCTGGCA 59.424 45.455 0.00 0.00 0.00 4.92
1416 1434 3.010138 AGGGTCAATTAACTAGCTGGCAA 59.990 43.478 0.00 0.00 0.00 4.52
1417 1435 3.128764 GGGTCAATTAACTAGCTGGCAAC 59.871 47.826 0.00 0.00 0.00 4.17
1435 1453 3.181501 GCAACAACGGCATGTATGTATGT 60.182 43.478 0.00 0.00 32.02 2.29
1436 1454 4.034626 GCAACAACGGCATGTATGTATGTA 59.965 41.667 0.00 0.00 32.02 2.29
1439 1457 6.299023 ACAACGGCATGTATGTATGTAATG 57.701 37.500 0.00 0.00 0.00 1.90
1441 1459 6.987404 ACAACGGCATGTATGTATGTAATGTA 59.013 34.615 0.00 0.00 0.00 2.29
1442 1460 7.659799 ACAACGGCATGTATGTATGTAATGTAT 59.340 33.333 0.00 0.00 0.00 2.29
1443 1461 7.595311 ACGGCATGTATGTATGTAATGTATG 57.405 36.000 0.00 0.00 0.00 2.39
1444 1462 7.158697 ACGGCATGTATGTATGTAATGTATGT 58.841 34.615 0.00 0.00 0.00 2.29
1445 1463 7.117667 ACGGCATGTATGTATGTAATGTATGTG 59.882 37.037 0.00 0.00 0.00 3.21
1447 1465 7.243487 GCATGTATGTATGTAATGTATGTGGC 58.757 38.462 0.00 0.00 0.00 5.01
1448 1466 7.455447 CATGTATGTATGTAATGTATGTGGCG 58.545 38.462 0.00 0.00 0.00 5.69
1449 1467 6.517605 TGTATGTATGTAATGTATGTGGCGT 58.482 36.000 0.00 0.00 0.00 5.68
1580 1600 3.797184 GCATCCTCTACATGTTCCTCGTC 60.797 52.174 2.30 0.00 0.00 4.20
1646 1666 3.177249 GTCGCCTTCACGTACGCC 61.177 66.667 16.72 0.00 0.00 5.68
1748 1768 4.479993 GAGATGCTGGCCGCCACT 62.480 66.667 8.43 3.64 38.05 4.00
1766 1786 2.046988 CTGATGGTGGCGCTGACA 60.047 61.111 7.64 3.89 0.00 3.58
1779 1799 1.828331 GCTGACAAACACGTCGTCCC 61.828 60.000 0.00 0.00 38.84 4.46
1787 1807 3.360340 ACGTCGTCCCTGTCGGTC 61.360 66.667 0.00 0.00 0.00 4.79
1814 1834 2.507324 GCCGACGACCTCAAGCTC 60.507 66.667 0.00 0.00 0.00 4.09
1841 1861 4.516195 GAGAACGGGCGGCTCCTC 62.516 72.222 9.56 6.80 34.39 3.71
1932 1952 0.460987 GAGGGAGAACAGCATGGACG 60.461 60.000 0.00 0.00 43.62 4.79
1934 1954 0.741221 GGGAGAACAGCATGGACGTC 60.741 60.000 7.13 7.13 43.62 4.34
1937 1957 0.247736 AGAACAGCATGGACGTCTCC 59.752 55.000 16.46 0.00 43.62 3.71
1940 1960 1.153489 CAGCATGGACGTCTCCCAG 60.153 63.158 16.46 2.80 37.08 4.45
1946 1966 2.579738 GACGTCTCCCAGGGCTTC 59.420 66.667 8.70 0.00 0.00 3.86
1949 1969 2.579738 GTCTCCCAGGGCTTCGTC 59.420 66.667 0.00 0.00 0.00 4.20
1951 1971 4.821589 CTCCCAGGGCTTCGTCGC 62.822 72.222 0.00 0.00 0.00 5.19
1970 1990 3.793888 CTAACCGGGGTGGGGCTC 61.794 72.222 6.32 0.00 44.64 4.70
2042 2062 1.748122 GCAGCACCATGTGAGGAGG 60.748 63.158 0.00 0.00 35.23 4.30
2123 2143 4.973055 TTCGACGGGTTGCCCACG 62.973 66.667 4.96 9.25 45.83 4.94
2204 2224 1.078708 CCTCGTGCCACCCGTTAAT 60.079 57.895 0.00 0.00 0.00 1.40
2214 2234 2.188912 CCCGTTAATGGGTTGCTGG 58.811 57.895 22.97 0.00 44.76 4.85
2267 2287 3.191371 GGATGAACTTCAACACCATGTCC 59.809 47.826 0.00 0.00 0.00 4.02
2270 2290 0.472471 ACTTCAACACCATGTCCGGT 59.528 50.000 0.00 0.00 41.07 5.28
2291 2311 4.552365 ATCATCCTGCCCGGCGTG 62.552 66.667 6.01 0.00 0.00 5.34
2408 2428 2.328099 GCTGCTCAACGTCAAGGGG 61.328 63.158 0.00 0.00 0.00 4.79
2435 2455 2.297033 GGACACCATGAACATGCAGTTT 59.703 45.455 9.03 0.00 41.51 2.66
2453 2473 1.631405 TTGCCAAATCAGAAGGGGTG 58.369 50.000 0.00 0.00 0.00 4.61
2456 2476 0.609131 CCAAATCAGAAGGGGTGCGT 60.609 55.000 0.00 0.00 0.00 5.24
2468 2488 4.008074 AGGGGTGCGTAATCATATTCAG 57.992 45.455 0.00 0.00 0.00 3.02
2469 2489 3.391296 AGGGGTGCGTAATCATATTCAGT 59.609 43.478 0.00 0.00 0.00 3.41
2472 2492 5.761234 GGGGTGCGTAATCATATTCAGTTTA 59.239 40.000 0.00 0.00 0.00 2.01
2473 2493 6.261381 GGGGTGCGTAATCATATTCAGTTTAA 59.739 38.462 0.00 0.00 0.00 1.52
2474 2494 7.040686 GGGGTGCGTAATCATATTCAGTTTAAT 60.041 37.037 0.00 0.00 0.00 1.40
2475 2495 8.349983 GGGTGCGTAATCATATTCAGTTTAATT 58.650 33.333 0.00 0.00 0.00 1.40
2490 2510 7.722363 TCAGTTTAATTATACTCAGCGATGGA 58.278 34.615 0.00 0.00 0.00 3.41
2491 2511 8.367911 TCAGTTTAATTATACTCAGCGATGGAT 58.632 33.333 0.00 0.00 0.00 3.41
2492 2512 8.438513 CAGTTTAATTATACTCAGCGATGGATG 58.561 37.037 0.00 0.00 0.00 3.51
2493 2513 7.604164 AGTTTAATTATACTCAGCGATGGATGG 59.396 37.037 0.00 0.00 0.00 3.51
2494 2514 5.745312 AATTATACTCAGCGATGGATGGA 57.255 39.130 0.00 0.00 0.00 3.41
2496 2516 2.364972 TACTCAGCGATGGATGGAGA 57.635 50.000 0.00 0.00 0.00 3.71
2497 2517 1.489481 ACTCAGCGATGGATGGAGAA 58.511 50.000 0.00 0.00 0.00 2.87
2498 2518 1.833630 ACTCAGCGATGGATGGAGAAA 59.166 47.619 0.00 0.00 0.00 2.52
2499 2519 2.437281 ACTCAGCGATGGATGGAGAAAT 59.563 45.455 0.00 0.00 0.00 2.17
2500 2520 3.065655 CTCAGCGATGGATGGAGAAATC 58.934 50.000 0.00 0.00 0.00 2.17
2501 2521 2.149578 CAGCGATGGATGGAGAAATCC 58.850 52.381 0.00 0.00 45.57 3.01
2502 2522 2.053244 AGCGATGGATGGAGAAATCCT 58.947 47.619 4.93 0.00 45.57 3.24
2505 2525 2.611473 CGATGGATGGAGAAATCCTCGG 60.611 54.545 12.96 0.00 45.57 4.63
2507 2527 0.250510 GGATGGAGAAATCCTCGGGC 60.251 60.000 0.00 0.00 42.57 6.13
2508 2528 0.601311 GATGGAGAAATCCTCGGGCG 60.601 60.000 0.00 0.00 42.89 6.13
2509 2529 2.044806 ATGGAGAAATCCTCGGGCGG 62.045 60.000 0.00 0.00 42.89 6.13
2510 2530 2.109181 GAGAAATCCTCGGGCGGG 59.891 66.667 0.00 0.00 31.32 6.13
2511 2531 3.462199 GAGAAATCCTCGGGCGGGG 62.462 68.421 0.00 0.00 37.02 5.73
2512 2532 3.793888 GAAATCCTCGGGCGGGGT 61.794 66.667 0.00 0.00 37.00 4.95
2513 2533 4.109675 AAATCCTCGGGCGGGGTG 62.110 66.667 0.00 0.00 37.00 4.61
2518 2538 4.856801 CTCGGGCGGGGTGGATTG 62.857 72.222 0.00 0.00 0.00 2.67
2520 2540 4.189580 CGGGCGGGGTGGATTGAT 62.190 66.667 0.00 0.00 0.00 2.57
2521 2541 2.519302 GGGCGGGGTGGATTGATG 60.519 66.667 0.00 0.00 0.00 3.07
2523 2543 1.077068 GGCGGGGTGGATTGATGAA 60.077 57.895 0.00 0.00 0.00 2.57
2524 2544 0.682855 GGCGGGGTGGATTGATGAAA 60.683 55.000 0.00 0.00 0.00 2.69
2525 2545 1.402787 GCGGGGTGGATTGATGAAAT 58.597 50.000 0.00 0.00 0.00 2.17
2526 2546 2.582052 GCGGGGTGGATTGATGAAATA 58.418 47.619 0.00 0.00 0.00 1.40
2527 2547 2.955660 GCGGGGTGGATTGATGAAATAA 59.044 45.455 0.00 0.00 0.00 1.40
2528 2548 3.243401 GCGGGGTGGATTGATGAAATAAC 60.243 47.826 0.00 0.00 0.00 1.89
2529 2549 4.207165 CGGGGTGGATTGATGAAATAACT 58.793 43.478 0.00 0.00 0.00 2.24
2530 2550 4.644685 CGGGGTGGATTGATGAAATAACTT 59.355 41.667 0.00 0.00 0.00 2.66
2531 2551 5.127031 CGGGGTGGATTGATGAAATAACTTT 59.873 40.000 0.00 0.00 0.00 2.66
2532 2552 6.350949 CGGGGTGGATTGATGAAATAACTTTT 60.351 38.462 0.00 0.00 0.00 2.27
2533 2553 7.394016 GGGGTGGATTGATGAAATAACTTTTT 58.606 34.615 0.00 0.00 0.00 1.94
2534 2554 8.536175 GGGGTGGATTGATGAAATAACTTTTTA 58.464 33.333 0.00 0.00 0.00 1.52
2535 2555 9.936759 GGGTGGATTGATGAAATAACTTTTTAA 57.063 29.630 0.00 0.00 0.00 1.52
2545 2565 9.904198 ATGAAATAACTTTTTAATTGGGATGGG 57.096 29.630 0.00 0.00 0.00 4.00
2546 2566 9.105844 TGAAATAACTTTTTAATTGGGATGGGA 57.894 29.630 0.00 0.00 0.00 4.37
2547 2567 9.599866 GAAATAACTTTTTAATTGGGATGGGAG 57.400 33.333 0.00 0.00 0.00 4.30
2548 2568 7.675161 ATAACTTTTTAATTGGGATGGGAGG 57.325 36.000 0.00 0.00 0.00 4.30
2549 2569 5.283876 ACTTTTTAATTGGGATGGGAGGA 57.716 39.130 0.00 0.00 0.00 3.71
2550 2570 5.272402 ACTTTTTAATTGGGATGGGAGGAG 58.728 41.667 0.00 0.00 0.00 3.69
2730 2750 1.497223 GCGCATGATGACCTGCTCTC 61.497 60.000 0.30 0.00 35.94 3.20
2791 2811 1.688884 TGATGGTGATGGAGCCGGA 60.689 57.895 5.05 0.00 0.00 5.14
2951 2971 0.599204 ACGACATGAACACGGTGGTC 60.599 55.000 19.08 19.08 33.88 4.02
2972 2992 2.632544 CCTGTACCTGCGGTCGACA 61.633 63.158 18.91 3.87 37.09 4.35
3003 3023 1.807165 CAGCAGATCGACGTGGTGG 60.807 63.158 16.60 2.94 38.30 4.61
3410 3430 0.878523 TGTTCCGGTTCGTGAAGCTG 60.879 55.000 0.00 3.89 36.72 4.24
3456 3476 3.322466 CCTCCAGGGTGGCTTCGT 61.322 66.667 0.00 0.00 37.47 3.85
3515 3535 2.342648 GAGGTGGACGAGCGGTTT 59.657 61.111 0.00 0.00 0.00 3.27
3611 3631 2.048127 GTGGTGGAGACGCTGGAC 60.048 66.667 0.00 0.00 41.78 4.02
3678 3698 2.932194 AGCCCAAGGAGCTGCTGA 60.932 61.111 9.14 0.00 39.69 4.26
3746 3766 1.153349 GGAGATCCTGGCGTCCAAC 60.153 63.158 0.35 0.00 30.80 3.77
3797 3817 3.036577 CAGCAGCACAGGGTGTTG 58.963 61.111 8.58 8.58 45.23 3.33
3804 3824 2.195567 CACAGGGTGTTGGTGCAGG 61.196 63.158 0.00 0.00 0.00 4.85
3818 3838 4.838152 CAGGTGCCCCGATGACCG 62.838 72.222 0.00 0.00 34.72 4.79
3827 3847 3.195002 CGATGACCGGCGCACATT 61.195 61.111 10.83 0.00 33.91 2.71
3828 3848 2.749865 CGATGACCGGCGCACATTT 61.750 57.895 10.83 0.00 33.91 2.32
3830 3850 1.922135 GATGACCGGCGCACATTTGT 61.922 55.000 10.83 0.86 0.00 2.83
3831 3851 0.675208 ATGACCGGCGCACATTTGTA 60.675 50.000 10.83 0.00 0.00 2.41
3832 3852 0.675208 TGACCGGCGCACATTTGTAT 60.675 50.000 10.83 0.00 0.00 2.29
3834 3854 0.392461 ACCGGCGCACATTTGTATCT 60.392 50.000 10.83 0.00 0.00 1.98
3835 3855 1.134640 ACCGGCGCACATTTGTATCTA 60.135 47.619 10.83 0.00 0.00 1.98
3836 3856 1.260561 CCGGCGCACATTTGTATCTAC 59.739 52.381 10.83 0.00 0.00 2.59
3837 3857 1.930503 CGGCGCACATTTGTATCTACA 59.069 47.619 10.83 0.00 0.00 2.74
3838 3858 2.033747 CGGCGCACATTTGTATCTACAG 60.034 50.000 10.83 0.00 37.52 2.74
3839 3859 2.936498 GGCGCACATTTGTATCTACAGT 59.064 45.455 10.83 0.00 37.52 3.55
3840 3860 4.116961 GGCGCACATTTGTATCTACAGTA 58.883 43.478 10.83 0.00 37.52 2.74
3841 3861 4.025979 GGCGCACATTTGTATCTACAGTAC 60.026 45.833 10.83 0.00 37.52 2.73
3842 3862 4.317139 GCGCACATTTGTATCTACAGTACG 60.317 45.833 0.30 0.00 37.52 3.67
3843 3863 4.796830 CGCACATTTGTATCTACAGTACGT 59.203 41.667 0.00 0.00 37.52 3.57
3865 3890 7.110307 CGTATAACAACGTAACGTAGTACAC 57.890 40.000 0.38 0.00 39.99 2.90
3866 3891 6.953743 CGTATAACAACGTAACGTAGTACACT 59.046 38.462 0.38 0.00 39.99 3.55
3867 3892 8.105742 CGTATAACAACGTAACGTAGTACACTA 58.894 37.037 0.38 0.00 39.99 2.74
3868 3893 9.409949 GTATAACAACGTAACGTAGTACACTAG 57.590 37.037 0.38 0.00 45.00 2.57
3869 3894 5.924475 ACAACGTAACGTAGTACACTAGT 57.076 39.130 0.38 0.00 45.00 2.57
3870 3895 6.300354 ACAACGTAACGTAGTACACTAGTT 57.700 37.500 0.00 0.00 45.00 2.24
3871 3896 6.136071 ACAACGTAACGTAGTACACTAGTTG 58.864 40.000 16.88 16.88 45.00 3.16
3872 3897 4.712763 ACGTAACGTAGTACACTAGTTGC 58.287 43.478 0.00 0.00 45.00 4.17
3873 3898 4.091424 CGTAACGTAGTACACTAGTTGCC 58.909 47.826 0.00 0.00 45.00 4.52
3891 3916 5.755375 AGTTGCCATATAATTCGTCACAGAG 59.245 40.000 0.00 0.00 0.00 3.35
3919 3944 2.029728 CAGCTTGTGCATACTTAGACGC 59.970 50.000 0.00 0.00 42.74 5.19
3922 3947 1.904144 TGTGCATACTTAGACGCGTC 58.096 50.000 31.30 31.30 0.00 5.19
3923 3948 0.838229 GTGCATACTTAGACGCGTCG 59.162 55.000 31.56 20.75 34.09 5.12
3924 3949 0.728542 TGCATACTTAGACGCGTCGA 59.271 50.000 31.56 25.37 34.09 4.20
3925 3950 1.332686 TGCATACTTAGACGCGTCGAT 59.667 47.619 31.56 19.12 34.09 3.59
3927 3952 3.002553 TGCATACTTAGACGCGTCGATTA 59.997 43.478 31.56 21.71 34.09 1.75
3928 3953 3.598668 GCATACTTAGACGCGTCGATTAG 59.401 47.826 31.56 26.02 34.09 1.73
3944 3973 5.234543 GTCGATTAGGATGCAGAAACTAACC 59.765 44.000 0.00 0.00 0.00 2.85
3977 4006 2.874701 GCTGTGTGGGCATATGTAAGAG 59.125 50.000 4.29 0.00 0.00 2.85
3994 4023 4.758773 AAGAGCCGAGTCTAGTACTACT 57.241 45.455 0.00 0.00 39.07 2.57
3995 4024 5.867903 AAGAGCCGAGTCTAGTACTACTA 57.132 43.478 0.00 0.00 39.07 1.82
3997 4026 4.895297 AGAGCCGAGTCTAGTACTACTAGT 59.105 45.833 18.80 0.00 46.31 2.57
3998 4027 6.068010 AGAGCCGAGTCTAGTACTACTAGTA 58.932 44.000 18.80 1.89 46.31 1.82
4018 4047 2.624316 CGTAGGTACACACGTCATGT 57.376 50.000 7.14 7.14 44.81 3.21
4019 4048 3.745332 CGTAGGTACACACGTCATGTA 57.255 47.619 9.59 5.30 40.64 2.29
4040 4069 8.808529 CATGTACTGTACTTGTCAAATACTAGC 58.191 37.037 19.94 0.00 34.68 3.42
4046 4075 7.438564 TGTACTTGTCAAATACTAGCAGTTGA 58.561 34.615 1.73 1.73 34.68 3.18
4051 4080 6.521162 TGTCAAATACTAGCAGTTGAGTGAA 58.479 36.000 6.10 0.00 33.58 3.18
4087 4116 5.610552 CGATTGTTTCGTGTCTTGACTCTTC 60.611 44.000 2.35 0.00 43.01 2.87
4091 4120 1.340248 TCGTGTCTTGACTCTTCACCC 59.660 52.381 2.35 0.00 0.00 4.61
4095 4124 3.007398 GTGTCTTGACTCTTCACCCATCT 59.993 47.826 2.35 0.00 0.00 2.90
4096 4125 4.220821 GTGTCTTGACTCTTCACCCATCTA 59.779 45.833 2.35 0.00 0.00 1.98
4097 4126 5.026121 TGTCTTGACTCTTCACCCATCTAT 58.974 41.667 2.35 0.00 0.00 1.98
4098 4127 5.127845 TGTCTTGACTCTTCACCCATCTATC 59.872 44.000 2.35 0.00 0.00 2.08
4099 4128 5.362430 GTCTTGACTCTTCACCCATCTATCT 59.638 44.000 0.00 0.00 0.00 1.98
4100 4129 6.547880 GTCTTGACTCTTCACCCATCTATCTA 59.452 42.308 0.00 0.00 0.00 1.98
4113 4142 7.720074 CACCCATCTATCTATACTAGCCGAATA 59.280 40.741 0.00 0.00 0.00 1.75
4117 4146 7.204243 TCTATCTATACTAGCCGAATACCCA 57.796 40.000 0.00 0.00 0.00 4.51
4251 4283 5.435291 TGCATTTTGTTTTCCTTGTTGGAT 58.565 33.333 0.00 0.00 45.68 3.41
4343 4375 4.074970 GTTGAAGGTTCCTCATGTCATGT 58.925 43.478 12.54 0.00 0.00 3.21
4623 4685 5.005740 TCCATGTTCTTCAGGAAGTCATTG 58.994 41.667 8.75 10.16 39.38 2.82
4724 4914 2.619646 TGATGCGCATGCTCATATTTGT 59.380 40.909 30.76 0.65 43.34 2.83
4735 4925 3.368843 GCTCATATTTGTTTGGCAGTTGC 59.631 43.478 0.00 0.00 41.14 4.17
4775 4965 7.309133 CCTCTGGCTATCGAATATCTGATATCC 60.309 44.444 10.43 6.51 35.11 2.59
4822 5012 6.039717 AGAGTCAATTGCAAAAGCTGAGTTTA 59.960 34.615 1.71 0.00 0.00 2.01
5065 5255 6.013725 ACTGACTCTTACCATTTCACCATACA 60.014 38.462 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.215399 TCTCCAACGATTTCAACAACATCC 59.785 41.667 0.00 0.00 0.00 3.51
62 63 2.358898 TGAGCAACTGCCACTTTTCTTC 59.641 45.455 0.00 0.00 43.38 2.87
130 131 0.671251 TTGATTTGTTTTCGGCGGCT 59.329 45.000 7.21 0.00 0.00 5.52
148 149 1.647545 CGGCGAGCAACATGGACATT 61.648 55.000 0.00 0.00 0.00 2.71
244 245 6.127786 CCACCATTCTTCTCTTCAAGATTTCC 60.128 42.308 0.00 0.00 32.32 3.13
281 282 1.287815 CACCGGAACTGTAGCACGA 59.712 57.895 9.46 0.00 0.00 4.35
302 311 5.422145 TCCACATTATCATCATATGGAGCG 58.578 41.667 2.13 0.00 31.25 5.03
316 325 3.250762 CGCACCGAAATCATCCACATTAT 59.749 43.478 0.00 0.00 0.00 1.28
317 326 2.611751 CGCACCGAAATCATCCACATTA 59.388 45.455 0.00 0.00 0.00 1.90
339 348 1.961277 CGGCGCTTGTTCCAACTCT 60.961 57.895 7.64 0.00 0.00 3.24
415 426 5.198207 TGTCTGGCATCATCTTGATCAATT 58.802 37.500 8.96 0.00 34.28 2.32
418 429 3.918294 TGTCTGGCATCATCTTGATCA 57.082 42.857 0.00 0.00 34.28 2.92
501 515 6.439675 AACCACACAAATAGTTTTACACGT 57.560 33.333 0.00 0.00 0.00 4.49
517 532 8.447053 ACAAACAAATACAAATTCAAACCACAC 58.553 29.630 0.00 0.00 0.00 3.82
565 580 6.042143 CCCGCAAATAGATAAACTGCAAATT 58.958 36.000 0.00 0.00 33.19 1.82
719 736 1.137614 TTGCAGTTCGCGCAAAACA 59.862 47.368 20.74 3.47 45.91 2.83
758 775 0.036388 CTCTAGCAGACCCCGCAAAA 60.036 55.000 0.00 0.00 0.00 2.44
759 776 1.192146 ACTCTAGCAGACCCCGCAAA 61.192 55.000 0.00 0.00 0.00 3.68
760 777 1.192146 AACTCTAGCAGACCCCGCAA 61.192 55.000 0.00 0.00 0.00 4.85
781 798 5.938125 GGTTTGTCTAAGGCACATCTAAGAA 59.062 40.000 0.00 0.00 0.00 2.52
788 805 2.969821 TGGGTTTGTCTAAGGCACAT 57.030 45.000 0.00 0.00 0.00 3.21
792 809 7.875327 TTTATAGAATGGGTTTGTCTAAGGC 57.125 36.000 0.00 0.00 0.00 4.35
797 814 9.320295 TCCAATTTTTATAGAATGGGTTTGTCT 57.680 29.630 4.93 0.00 30.86 3.41
798 815 9.936759 TTCCAATTTTTATAGAATGGGTTTGTC 57.063 29.630 4.93 0.00 30.86 3.18
799 816 9.942850 CTTCCAATTTTTATAGAATGGGTTTGT 57.057 29.630 4.93 0.00 30.86 2.83
800 817 8.882736 GCTTCCAATTTTTATAGAATGGGTTTG 58.117 33.333 4.93 0.00 30.86 2.93
801 818 8.601546 TGCTTCCAATTTTTATAGAATGGGTTT 58.398 29.630 4.93 0.00 30.86 3.27
802 819 8.144862 TGCTTCCAATTTTTATAGAATGGGTT 57.855 30.769 4.93 0.00 30.86 4.11
803 820 7.147672 CCTGCTTCCAATTTTTATAGAATGGGT 60.148 37.037 4.93 0.00 30.86 4.51
804 821 7.069826 TCCTGCTTCCAATTTTTATAGAATGGG 59.930 37.037 0.00 0.00 0.00 4.00
805 822 8.010733 TCCTGCTTCCAATTTTTATAGAATGG 57.989 34.615 0.00 0.00 0.00 3.16
806 823 7.650903 GCTCCTGCTTCCAATTTTTATAGAATG 59.349 37.037 0.00 0.00 36.03 2.67
859 876 8.918202 AGGATTGAGAGTGTGTTGTAAAATTA 57.082 30.769 0.00 0.00 0.00 1.40
862 879 8.918202 AATAGGATTGAGAGTGTGTTGTAAAA 57.082 30.769 0.00 0.00 0.00 1.52
875 892 1.729586 CCCCCGGAATAGGATTGAGA 58.270 55.000 0.73 0.00 0.00 3.27
877 894 1.764571 CGCCCCCGGAATAGGATTGA 61.765 60.000 0.73 0.00 0.00 2.57
995 1013 1.335964 TGACGAGTCTCCTTGCGAAAG 60.336 52.381 0.00 0.00 0.00 2.62
997 1015 0.241213 CTGACGAGTCTCCTTGCGAA 59.759 55.000 4.78 0.00 0.00 4.70
998 1016 1.587043 CCTGACGAGTCTCCTTGCGA 61.587 60.000 4.78 0.00 0.00 5.10
999 1017 1.153939 CCTGACGAGTCTCCTTGCG 60.154 63.158 4.78 0.00 0.00 4.85
1000 1018 0.603569 TTCCTGACGAGTCTCCTTGC 59.396 55.000 4.78 0.00 0.00 4.01
1069 1087 3.291101 TAGTTGGACGGCGCCTGTC 62.291 63.158 30.64 30.64 35.60 3.51
1070 1088 3.307906 TAGTTGGACGGCGCCTGT 61.308 61.111 26.68 23.51 0.00 4.00
1071 1089 2.813908 GTAGTTGGACGGCGCCTG 60.814 66.667 26.68 20.24 0.00 4.85
1072 1090 4.430765 CGTAGTTGGACGGCGCCT 62.431 66.667 26.68 11.91 39.19 5.52
1111 1129 2.656651 CATCTTCCTCGCGCTCGG 60.657 66.667 5.56 5.56 36.13 4.63
1112 1130 2.656651 CCATCTTCCTCGCGCTCG 60.657 66.667 5.56 0.00 0.00 5.03
1113 1131 2.279784 CCCATCTTCCTCGCGCTC 60.280 66.667 5.56 0.00 0.00 5.03
1114 1132 2.303549 CTTCCCATCTTCCTCGCGCT 62.304 60.000 5.56 0.00 0.00 5.92
1115 1133 1.884926 CTTCCCATCTTCCTCGCGC 60.885 63.158 0.00 0.00 0.00 6.86
1116 1134 0.249238 CTCTTCCCATCTTCCTCGCG 60.249 60.000 0.00 0.00 0.00 5.87
1158 1176 2.662596 GTCCACACCAGCGGATCA 59.337 61.111 0.00 0.00 32.83 2.92
1230 1248 1.006805 GGAGACGAGGATGATGGCG 60.007 63.158 0.00 0.00 0.00 5.69
1272 1290 1.743995 ATTCGGCTGGTTGTACCGC 60.744 57.895 0.00 0.00 46.49 5.68
1323 1341 2.706890 GCCCGGAGAAATAAGTGTCAA 58.293 47.619 0.73 0.00 0.00 3.18
1329 1347 1.892391 GCCCGCCCGGAGAAATAAG 60.892 63.158 0.73 0.00 37.50 1.73
1331 1349 4.230002 CGCCCGCCCGGAGAAATA 62.230 66.667 0.73 0.00 37.50 1.40
1341 1359 2.065906 TTTCTTCAACAACGCCCGCC 62.066 55.000 0.00 0.00 0.00 6.13
1342 1360 0.248702 TTTTCTTCAACAACGCCCGC 60.249 50.000 0.00 0.00 0.00 6.13
1347 1365 3.568007 TCCCTCCATTTTCTTCAACAACG 59.432 43.478 0.00 0.00 0.00 4.10
1348 1366 4.559502 GCTCCCTCCATTTTCTTCAACAAC 60.560 45.833 0.00 0.00 0.00 3.32
1349 1367 3.573967 GCTCCCTCCATTTTCTTCAACAA 59.426 43.478 0.00 0.00 0.00 2.83
1352 1370 2.224769 ACGCTCCCTCCATTTTCTTCAA 60.225 45.455 0.00 0.00 0.00 2.69
1354 1372 2.010497 GACGCTCCCTCCATTTTCTTC 58.990 52.381 0.00 0.00 0.00 2.87
1355 1373 1.351017 TGACGCTCCCTCCATTTTCTT 59.649 47.619 0.00 0.00 0.00 2.52
1365 1383 2.267006 CACTGCATGACGCTCCCT 59.733 61.111 0.00 0.00 43.06 4.20
1366 1384 3.503363 GCACTGCATGACGCTCCC 61.503 66.667 0.00 0.00 43.06 4.30
1367 1385 2.743538 TGCACTGCATGACGCTCC 60.744 61.111 0.00 0.00 43.06 4.70
1369 1387 2.031616 ACTGCACTGCATGACGCT 59.968 55.556 3.64 0.00 43.06 5.07
1371 1389 2.175078 GCACTGCACTGCATGACG 59.825 61.111 12.77 0.00 38.13 4.35
1372 1390 1.209383 CTGCACTGCACTGCATGAC 59.791 57.895 19.38 0.00 46.05 3.06
1373 1391 1.228033 ACTGCACTGCACTGCATGA 60.228 52.632 19.38 0.00 46.05 3.07
1374 1392 1.081442 CACTGCACTGCACTGCATG 60.081 57.895 19.38 15.34 46.05 4.06
1375 1393 0.250424 TACACTGCACTGCACTGCAT 60.250 50.000 19.38 9.26 46.05 3.96
1376 1394 0.881600 CTACACTGCACTGCACTGCA 60.882 55.000 18.27 18.27 45.06 4.41
1377 1395 1.572085 CCTACACTGCACTGCACTGC 61.572 60.000 10.99 10.99 37.70 4.40
1378 1396 0.952497 CCCTACACTGCACTGCACTG 60.952 60.000 0.00 4.38 33.79 3.66
1379 1397 1.372683 CCCTACACTGCACTGCACT 59.627 57.895 0.00 0.00 33.79 4.40
1380 1398 0.951040 GACCCTACACTGCACTGCAC 60.951 60.000 0.00 0.00 33.79 4.57
1381 1399 1.371183 GACCCTACACTGCACTGCA 59.629 57.895 3.11 3.11 36.92 4.41
1382 1400 0.250295 TTGACCCTACACTGCACTGC 60.250 55.000 0.00 0.00 0.00 4.40
1383 1401 2.479566 ATTGACCCTACACTGCACTG 57.520 50.000 0.00 0.00 0.00 3.66
1384 1402 4.041691 AGTTAATTGACCCTACACTGCACT 59.958 41.667 0.00 0.00 0.00 4.40
1385 1403 4.324267 AGTTAATTGACCCTACACTGCAC 58.676 43.478 0.00 0.00 0.00 4.57
1386 1404 4.634012 AGTTAATTGACCCTACACTGCA 57.366 40.909 0.00 0.00 0.00 4.41
1387 1405 4.571176 GCTAGTTAATTGACCCTACACTGC 59.429 45.833 0.00 0.00 0.00 4.40
1388 1406 5.812642 CAGCTAGTTAATTGACCCTACACTG 59.187 44.000 0.00 0.00 0.00 3.66
1389 1407 5.104900 CCAGCTAGTTAATTGACCCTACACT 60.105 44.000 0.00 0.00 0.00 3.55
1390 1408 5.116882 CCAGCTAGTTAATTGACCCTACAC 58.883 45.833 0.00 0.00 0.00 2.90
1391 1409 4.383770 GCCAGCTAGTTAATTGACCCTACA 60.384 45.833 0.00 0.00 0.00 2.74
1392 1410 4.127907 GCCAGCTAGTTAATTGACCCTAC 58.872 47.826 0.00 0.00 0.00 3.18
1393 1411 3.778075 TGCCAGCTAGTTAATTGACCCTA 59.222 43.478 0.00 0.00 0.00 3.53
1394 1412 2.576191 TGCCAGCTAGTTAATTGACCCT 59.424 45.455 0.00 0.00 0.00 4.34
1395 1413 2.999331 TGCCAGCTAGTTAATTGACCC 58.001 47.619 0.00 0.00 0.00 4.46
1396 1414 3.756434 TGTTGCCAGCTAGTTAATTGACC 59.244 43.478 0.00 0.00 0.00 4.02
1397 1415 5.154222 GTTGTTGCCAGCTAGTTAATTGAC 58.846 41.667 0.00 0.00 0.00 3.18
1398 1416 4.083537 CGTTGTTGCCAGCTAGTTAATTGA 60.084 41.667 0.00 0.00 0.00 2.57
1399 1417 4.158384 CGTTGTTGCCAGCTAGTTAATTG 58.842 43.478 0.00 0.00 0.00 2.32
1400 1418 3.190535 CCGTTGTTGCCAGCTAGTTAATT 59.809 43.478 0.00 0.00 0.00 1.40
1401 1419 2.747446 CCGTTGTTGCCAGCTAGTTAAT 59.253 45.455 0.00 0.00 0.00 1.40
1402 1420 2.147958 CCGTTGTTGCCAGCTAGTTAA 58.852 47.619 0.00 0.00 0.00 2.01
1403 1421 1.803334 CCGTTGTTGCCAGCTAGTTA 58.197 50.000 0.00 0.00 0.00 2.24
1404 1422 1.515521 GCCGTTGTTGCCAGCTAGTT 61.516 55.000 0.00 0.00 0.00 2.24
1405 1423 1.966451 GCCGTTGTTGCCAGCTAGT 60.966 57.895 0.00 0.00 0.00 2.57
1406 1424 1.308069 ATGCCGTTGTTGCCAGCTAG 61.308 55.000 0.00 0.00 0.00 3.42
1407 1425 1.303236 ATGCCGTTGTTGCCAGCTA 60.303 52.632 0.00 0.00 0.00 3.32
1408 1426 2.598394 ATGCCGTTGTTGCCAGCT 60.598 55.556 0.00 0.00 0.00 4.24
1409 1427 1.861542 TACATGCCGTTGTTGCCAGC 61.862 55.000 0.00 0.00 0.00 4.85
1410 1428 0.810648 ATACATGCCGTTGTTGCCAG 59.189 50.000 0.00 0.00 0.00 4.85
1411 1429 0.525311 CATACATGCCGTTGTTGCCA 59.475 50.000 0.00 0.00 0.00 4.92
1412 1430 0.525761 ACATACATGCCGTTGTTGCC 59.474 50.000 0.00 0.00 0.00 4.52
1413 1431 3.181501 ACATACATACATGCCGTTGTTGC 60.182 43.478 0.00 0.00 0.00 4.17
1414 1432 4.614555 ACATACATACATGCCGTTGTTG 57.385 40.909 0.00 0.00 0.00 3.33
1415 1433 6.317642 ACATTACATACATACATGCCGTTGTT 59.682 34.615 0.00 0.00 0.00 2.83
1416 1434 5.820423 ACATTACATACATACATGCCGTTGT 59.180 36.000 0.00 0.00 0.00 3.32
1417 1435 6.299023 ACATTACATACATACATGCCGTTG 57.701 37.500 0.00 0.00 0.00 4.10
1418 1436 7.659799 ACATACATTACATACATACATGCCGTT 59.340 33.333 0.00 0.00 0.00 4.44
1419 1437 7.117667 CACATACATTACATACATACATGCCGT 59.882 37.037 0.00 0.00 0.00 5.68
1435 1453 1.003108 CACGCACGCCACATACATTA 58.997 50.000 0.00 0.00 0.00 1.90
1436 1454 1.793581 CACGCACGCCACATACATT 59.206 52.632 0.00 0.00 0.00 2.71
1439 1457 3.367051 CTGCACGCACGCCACATAC 62.367 63.158 0.00 0.00 0.00 2.39
1565 1585 0.527817 GGCCGACGAGGAACATGTAG 60.528 60.000 0.00 0.00 45.00 2.74
1580 1600 3.432051 GATGTCCGTCTCCAGGCCG 62.432 68.421 0.00 0.00 0.00 6.13
1625 1645 2.126618 TACGTGAAGGCGACGCAG 60.127 61.111 23.09 7.55 40.56 5.18
1631 1651 3.475774 GTGGCGTACGTGAAGGCG 61.476 66.667 17.90 0.00 34.66 5.52
1745 1765 2.104859 CAGCGCCACCATCAGAGTG 61.105 63.158 2.29 0.00 34.91 3.51
1748 1768 2.110757 TTGTCAGCGCCACCATCAGA 62.111 55.000 2.29 0.00 0.00 3.27
1799 1819 1.797933 CGTGAGCTTGAGGTCGTCG 60.798 63.158 5.81 8.79 44.88 5.12
1859 1879 4.206088 CGATGACGCATATGATGTTTGTG 58.794 43.478 6.97 0.00 0.00 3.33
1862 1882 2.224079 GCCGATGACGCATATGATGTTT 59.776 45.455 6.97 0.00 38.29 2.83
1932 1952 2.579738 GACGAAGCCCTGGGAGAC 59.420 66.667 19.27 5.15 0.00 3.36
1934 1954 4.821589 GCGACGAAGCCCTGGGAG 62.822 72.222 19.27 6.66 0.00 4.30
1940 1960 3.551915 GTTAGCGCGACGAAGCCC 61.552 66.667 12.10 0.00 0.00 5.19
1992 2012 2.958016 GTTCACGCGTGTCACGGT 60.958 61.111 35.74 18.28 42.82 4.83
1994 2014 2.927618 CTGGTTCACGCGTGTCACG 61.928 63.158 35.74 21.02 45.88 4.35
2027 2047 2.821366 CGCCTCCTCACATGGTGC 60.821 66.667 0.00 0.00 32.98 5.01
2054 2074 2.141517 CAGATGGCCGAGATCATGAAC 58.858 52.381 0.00 0.00 0.00 3.18
2189 2209 2.403378 CCCATTAACGGGTGGCACG 61.403 63.158 12.17 3.45 41.83 5.34
2214 2234 0.108281 GTGGCGAAGTAGAAGGGGAC 60.108 60.000 0.00 0.00 0.00 4.46
2267 2287 2.903855 GGCAGGATGATGGCACCG 60.904 66.667 0.00 0.00 44.71 4.94
2289 2309 1.642215 CGAGCAGCATCATGAGCAC 59.358 57.895 16.20 6.11 0.00 4.40
2291 2311 2.894565 GCCGAGCAGCATCATGAGC 61.895 63.158 0.09 5.31 0.00 4.26
2402 2422 2.978010 GTGTCCACGTGCCCCTTG 60.978 66.667 10.91 0.00 0.00 3.61
2408 2428 1.163420 TGTTCATGGTGTCCACGTGC 61.163 55.000 10.91 0.00 35.80 5.34
2435 2455 0.899717 GCACCCCTTCTGATTTGGCA 60.900 55.000 0.00 0.00 0.00 4.92
2468 2488 7.602644 TCCATCCATCGCTGAGTATAATTAAAC 59.397 37.037 0.00 0.00 0.00 2.01
2469 2489 7.676004 TCCATCCATCGCTGAGTATAATTAAA 58.324 34.615 0.00 0.00 0.00 1.52
2472 2492 5.481824 TCTCCATCCATCGCTGAGTATAATT 59.518 40.000 0.00 0.00 0.00 1.40
2473 2493 5.019470 TCTCCATCCATCGCTGAGTATAAT 58.981 41.667 0.00 0.00 0.00 1.28
2474 2494 4.407365 TCTCCATCCATCGCTGAGTATAA 58.593 43.478 0.00 0.00 0.00 0.98
2475 2495 4.034285 TCTCCATCCATCGCTGAGTATA 57.966 45.455 0.00 0.00 0.00 1.47
2476 2496 2.881734 TCTCCATCCATCGCTGAGTAT 58.118 47.619 0.00 0.00 0.00 2.12
2477 2497 2.364972 TCTCCATCCATCGCTGAGTA 57.635 50.000 0.00 0.00 0.00 2.59
2479 2499 2.609427 TTTCTCCATCCATCGCTGAG 57.391 50.000 0.00 0.00 0.00 3.35
2480 2500 2.224378 GGATTTCTCCATCCATCGCTGA 60.224 50.000 0.00 0.00 42.35 4.26
2481 2501 2.149578 GGATTTCTCCATCCATCGCTG 58.850 52.381 0.00 0.00 42.35 5.18
2482 2502 2.038295 GAGGATTTCTCCATCCATCGCT 59.962 50.000 2.62 0.00 44.93 4.93
2483 2503 2.421619 GAGGATTTCTCCATCCATCGC 58.578 52.381 2.62 0.00 44.93 4.58
2484 2504 2.611473 CCGAGGATTTCTCCATCCATCG 60.611 54.545 2.62 8.06 44.93 3.84
2487 2507 1.131638 CCCGAGGATTTCTCCATCCA 58.868 55.000 2.62 0.00 44.93 3.41
2488 2508 0.250510 GCCCGAGGATTTCTCCATCC 60.251 60.000 0.00 0.00 44.79 3.51
2490 2510 1.447643 CGCCCGAGGATTTCTCCAT 59.552 57.895 0.00 0.00 44.79 3.41
2491 2511 2.731571 CCGCCCGAGGATTTCTCCA 61.732 63.158 0.00 0.00 44.79 3.86
2492 2512 2.109181 CCGCCCGAGGATTTCTCC 59.891 66.667 0.00 0.00 42.43 3.71
2493 2513 2.109181 CCCGCCCGAGGATTTCTC 59.891 66.667 0.00 0.00 39.10 2.87
2494 2514 3.480133 CCCCGCCCGAGGATTTCT 61.480 66.667 0.00 0.00 0.00 2.52
2496 2516 4.109675 CACCCCGCCCGAGGATTT 62.110 66.667 0.00 0.00 0.00 2.17
2501 2521 4.856801 CAATCCACCCCGCCCGAG 62.857 72.222 0.00 0.00 0.00 4.63
2505 2525 0.682855 TTTCATCAATCCACCCCGCC 60.683 55.000 0.00 0.00 0.00 6.13
2507 2527 4.207165 AGTTATTTCATCAATCCACCCCG 58.793 43.478 0.00 0.00 0.00 5.73
2508 2528 6.544928 AAAGTTATTTCATCAATCCACCCC 57.455 37.500 0.00 0.00 0.00 4.95
2509 2529 9.936759 TTAAAAAGTTATTTCATCAATCCACCC 57.063 29.630 0.00 0.00 0.00 4.61
2519 2539 9.904198 CCCATCCCAATTAAAAAGTTATTTCAT 57.096 29.630 0.00 0.00 0.00 2.57
2520 2540 9.105844 TCCCATCCCAATTAAAAAGTTATTTCA 57.894 29.630 0.00 0.00 0.00 2.69
2521 2541 9.599866 CTCCCATCCCAATTAAAAAGTTATTTC 57.400 33.333 0.00 0.00 0.00 2.17
2523 2543 7.904022 TCCTCCCATCCCAATTAAAAAGTTATT 59.096 33.333 0.00 0.00 0.00 1.40
2524 2544 7.426667 TCCTCCCATCCCAATTAAAAAGTTAT 58.573 34.615 0.00 0.00 0.00 1.89
2525 2545 6.806217 TCCTCCCATCCCAATTAAAAAGTTA 58.194 36.000 0.00 0.00 0.00 2.24
2526 2546 5.660533 TCCTCCCATCCCAATTAAAAAGTT 58.339 37.500 0.00 0.00 0.00 2.66
2527 2547 5.222547 ACTCCTCCCATCCCAATTAAAAAGT 60.223 40.000 0.00 0.00 0.00 2.66
2528 2548 5.127682 CACTCCTCCCATCCCAATTAAAAAG 59.872 44.000 0.00 0.00 0.00 2.27
2529 2549 5.022787 CACTCCTCCCATCCCAATTAAAAA 58.977 41.667 0.00 0.00 0.00 1.94
2530 2550 4.609301 CACTCCTCCCATCCCAATTAAAA 58.391 43.478 0.00 0.00 0.00 1.52
2531 2551 3.627237 GCACTCCTCCCATCCCAATTAAA 60.627 47.826 0.00 0.00 0.00 1.52
2532 2552 2.091885 GCACTCCTCCCATCCCAATTAA 60.092 50.000 0.00 0.00 0.00 1.40
2533 2553 1.494721 GCACTCCTCCCATCCCAATTA 59.505 52.381 0.00 0.00 0.00 1.40
2534 2554 0.259938 GCACTCCTCCCATCCCAATT 59.740 55.000 0.00 0.00 0.00 2.32
2535 2555 0.920763 TGCACTCCTCCCATCCCAAT 60.921 55.000 0.00 0.00 0.00 3.16
2536 2556 1.541118 TGCACTCCTCCCATCCCAA 60.541 57.895 0.00 0.00 0.00 4.12
2537 2557 1.997311 CTGCACTCCTCCCATCCCA 60.997 63.158 0.00 0.00 0.00 4.37
2538 2558 2.750657 CCTGCACTCCTCCCATCCC 61.751 68.421 0.00 0.00 0.00 3.85
2539 2559 1.997874 ACCTGCACTCCTCCCATCC 60.998 63.158 0.00 0.00 0.00 3.51
2540 2560 1.222936 CACCTGCACTCCTCCCATC 59.777 63.158 0.00 0.00 0.00 3.51
2541 2561 1.539869 ACACCTGCACTCCTCCCAT 60.540 57.895 0.00 0.00 0.00 4.00
2542 2562 2.122413 ACACCTGCACTCCTCCCA 60.122 61.111 0.00 0.00 0.00 4.37
2543 2563 2.348998 CACACCTGCACTCCTCCC 59.651 66.667 0.00 0.00 0.00 4.30
2544 2564 2.348998 CCACACCTGCACTCCTCC 59.651 66.667 0.00 0.00 0.00 4.30
2545 2565 2.348998 CCCACACCTGCACTCCTC 59.651 66.667 0.00 0.00 0.00 3.71
2546 2566 3.958860 GCCCACACCTGCACTCCT 61.959 66.667 0.00 0.00 0.00 3.69
2639 2659 0.603707 CCTCTTTCTCCTTGCGCACA 60.604 55.000 11.12 0.00 0.00 4.57
2730 2750 4.156622 CATGGAGTGCGCGCTGTG 62.157 66.667 30.98 19.38 0.00 3.66
2981 3001 0.803768 CCACGTCGATCTGCTGGAAG 60.804 60.000 0.00 0.00 0.00 3.46
2984 3004 1.807165 CACCACGTCGATCTGCTGG 60.807 63.158 0.00 0.00 0.00 4.85
3299 3319 4.814294 AGGAACACCGCCGCGATC 62.814 66.667 15.93 6.80 0.00 3.69
3515 3535 4.978083 GTTCTCGTAGAACCTCCACATA 57.022 45.455 13.53 0.00 46.68 2.29
3590 3610 3.681835 AGCGTCTCCACCACGTCC 61.682 66.667 0.00 0.00 39.54 4.79
3671 3691 4.166888 TCCAGCCCGATCAGCAGC 62.167 66.667 7.42 0.00 0.00 5.25
3678 3698 3.461773 CCACTCGTCCAGCCCGAT 61.462 66.667 0.00 0.00 33.27 4.18
3818 3838 2.936498 ACTGTAGATACAAATGTGCGCC 59.064 45.455 4.18 0.00 35.50 6.53
3819 3839 4.317139 CGTACTGTAGATACAAATGTGCGC 60.317 45.833 0.00 0.00 33.86 6.09
3820 3840 4.796830 ACGTACTGTAGATACAAATGTGCG 59.203 41.667 14.90 14.90 40.74 5.34
3826 3846 9.489393 CGTTGTTATACGTACTGTAGATACAAA 57.511 33.333 0.00 0.00 36.25 2.83
3841 3861 6.953743 AGTGTACTACGTTACGTTGTTATACG 59.046 38.462 26.51 4.89 42.18 3.06
3842 3862 9.409949 CTAGTGTACTACGTTACGTTGTTATAC 57.590 37.037 26.51 19.47 42.18 1.47
3843 3863 9.146984 ACTAGTGTACTACGTTACGTTGTTATA 57.853 33.333 26.51 12.79 42.18 0.98
3848 3873 5.058492 GCAACTAGTGTACTACGTTACGTTG 59.942 44.000 17.42 16.97 41.54 4.10
3857 3882 9.125906 CGAATTATATGGCAACTAGTGTACTAC 57.874 37.037 0.00 0.00 37.61 2.73
3862 3887 6.479001 GTGACGAATTATATGGCAACTAGTGT 59.521 38.462 0.00 0.00 37.61 3.55
3863 3888 6.478673 TGTGACGAATTATATGGCAACTAGTG 59.521 38.462 0.00 0.00 37.61 2.74
3864 3889 6.578944 TGTGACGAATTATATGGCAACTAGT 58.421 36.000 0.00 0.00 37.61 2.57
3865 3890 6.923508 TCTGTGACGAATTATATGGCAACTAG 59.076 38.462 0.00 0.00 37.61 2.57
3866 3891 6.811954 TCTGTGACGAATTATATGGCAACTA 58.188 36.000 0.00 0.00 37.61 2.24
3867 3892 5.670485 TCTGTGACGAATTATATGGCAACT 58.330 37.500 0.00 0.00 37.61 3.16
3868 3893 5.753438 TCTCTGTGACGAATTATATGGCAAC 59.247 40.000 0.00 0.00 0.00 4.17
3869 3894 5.912892 TCTCTGTGACGAATTATATGGCAA 58.087 37.500 0.00 0.00 0.00 4.52
3870 3895 5.529581 TCTCTGTGACGAATTATATGGCA 57.470 39.130 0.00 0.00 0.00 4.92
3871 3896 5.753438 TGTTCTCTGTGACGAATTATATGGC 59.247 40.000 0.00 0.00 0.00 4.40
3872 3897 7.570140 GCATGTTCTCTGTGACGAATTATATGG 60.570 40.741 0.00 0.00 0.00 2.74
3873 3898 7.042523 TGCATGTTCTCTGTGACGAATTATATG 60.043 37.037 0.00 0.00 0.00 1.78
3907 3932 4.084171 TCCTAATCGACGCGTCTAAGTATG 60.084 45.833 33.94 21.11 0.00 2.39
3919 3944 3.448686 AGTTTCTGCATCCTAATCGACG 58.551 45.455 0.00 0.00 0.00 5.12
3922 3947 5.006746 GTGGTTAGTTTCTGCATCCTAATCG 59.993 44.000 0.00 0.00 0.00 3.34
3923 3948 5.297029 GGTGGTTAGTTTCTGCATCCTAATC 59.703 44.000 0.00 0.00 0.00 1.75
3924 3949 5.193679 GGTGGTTAGTTTCTGCATCCTAAT 58.806 41.667 0.00 0.00 0.00 1.73
3925 3950 4.585879 GGTGGTTAGTTTCTGCATCCTAA 58.414 43.478 0.00 0.00 0.00 2.69
3927 3952 2.615493 CGGTGGTTAGTTTCTGCATCCT 60.615 50.000 0.00 0.00 0.00 3.24
3928 3953 1.737793 CGGTGGTTAGTTTCTGCATCC 59.262 52.381 0.00 0.00 0.00 3.51
3944 3973 1.069296 CCACACAGCAATACAACGGTG 60.069 52.381 0.00 0.00 37.88 4.94
3999 4028 2.624316 ACATGACGTGTGTACCTACG 57.376 50.000 14.93 14.93 45.19 3.51
4012 4041 8.758633 AGTATTTGACAAGTACAGTACATGAC 57.241 34.615 20.28 15.08 32.20 3.06
4017 4046 8.027771 ACTGCTAGTATTTGACAAGTACAGTAC 58.972 37.037 19.41 2.05 32.13 2.73
4018 4047 8.118976 ACTGCTAGTATTTGACAAGTACAGTA 57.881 34.615 19.41 13.48 32.13 2.74
4019 4048 6.994221 ACTGCTAGTATTTGACAAGTACAGT 58.006 36.000 19.41 12.44 0.00 3.55
4020 4049 7.598869 TCAACTGCTAGTATTTGACAAGTACAG 59.401 37.037 19.41 15.26 0.00 2.74
4021 4050 7.438564 TCAACTGCTAGTATTTGACAAGTACA 58.561 34.615 19.41 7.76 0.00 2.90
4040 4069 5.634896 GGTGCTGATATTTTCACTCAACTG 58.365 41.667 0.00 0.00 0.00 3.16
4046 4075 4.943705 ACAATCGGTGCTGATATTTTCACT 59.056 37.500 0.00 0.00 0.00 3.41
4087 4116 5.437946 TCGGCTAGTATAGATAGATGGGTG 58.562 45.833 0.00 0.00 42.77 4.61
4091 4120 7.720074 TGGGTATTCGGCTAGTATAGATAGATG 59.280 40.741 0.00 0.00 42.77 2.90
4095 4124 6.264744 GCATGGGTATTCGGCTAGTATAGATA 59.735 42.308 0.00 0.00 42.77 1.98
4096 4125 5.069251 GCATGGGTATTCGGCTAGTATAGAT 59.931 44.000 0.00 0.00 42.77 1.98
4097 4126 4.401519 GCATGGGTATTCGGCTAGTATAGA 59.598 45.833 0.00 0.00 42.77 1.98
4098 4127 4.683832 GCATGGGTATTCGGCTAGTATAG 58.316 47.826 0.00 0.00 43.09 1.31
4099 4128 3.129813 CGCATGGGTATTCGGCTAGTATA 59.870 47.826 0.68 0.00 0.00 1.47
4100 4129 2.094182 CGCATGGGTATTCGGCTAGTAT 60.094 50.000 0.68 0.00 0.00 2.12
4623 4685 3.555956 ACTATAGCTACAACATGCAACGC 59.444 43.478 0.00 0.00 0.00 4.84
4724 4914 1.106351 ACCATCACGCAACTGCCAAA 61.106 50.000 0.00 0.00 37.91 3.28
4735 4925 0.743688 CAGAGGAGAGGACCATCACG 59.256 60.000 0.00 0.00 0.00 4.35
4775 4965 2.117156 CATCCAAGAGGCGGGCAAG 61.117 63.158 3.78 0.00 33.74 4.01
4822 5012 2.159142 CCAGAATTCTACTAACGCCGGT 60.159 50.000 7.86 0.00 0.00 5.28
5065 5255 6.767456 TGCCACATAATTTTGTTTCAGGATT 58.233 32.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.