Multiple sequence alignment - TraesCS5A01G511900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G511900 chr5A 100.000 2817 0 0 1 2817 675780056 675782872 0.000000e+00 5203.0
1 TraesCS5A01G511900 chr5A 84.000 225 20 5 2609 2817 675741128 675741352 5.600000e-48 202.0
2 TraesCS5A01G511900 chr5A 100.000 88 0 0 3224 3311 675783279 675783366 2.640000e-36 163.0
3 TraesCS5A01G511900 chr5A 76.892 251 44 9 2581 2817 631086191 631086441 2.680000e-26 130.0
4 TraesCS5A01G511900 chr4D 93.550 2837 149 19 1 2817 496694799 496697621 0.000000e+00 4194.0
5 TraesCS5A01G511900 chr4D 83.262 233 21 11 2601 2817 496663988 496664218 7.250000e-47 198.0
6 TraesCS5A01G511900 chr4D 94.253 87 2 3 3226 3309 496664255 496664341 2.680000e-26 130.0
7 TraesCS5A01G511900 chr4B 91.702 2591 138 33 1 2563 636736282 636738823 0.000000e+00 3522.0
8 TraesCS5A01G511900 chr4B 85.345 232 18 6 2601 2817 636703372 636703602 3.320000e-55 226.0
9 TraesCS5A01G511900 chr4B 94.382 89 2 3 3224 3309 636703636 636703724 2.070000e-27 134.0
10 TraesCS5A01G511900 chr1D 85.980 2632 278 45 1 2581 477239410 477242001 0.000000e+00 2732.0
11 TraesCS5A01G511900 chr1D 81.358 810 92 31 1 792 477243791 477244559 3.650000e-169 604.0
12 TraesCS5A01G511900 chr1D 90.878 296 27 0 1683 1978 477238107 477238402 6.660000e-107 398.0
13 TraesCS5A01G511900 chr1D 82.743 226 24 7 2165 2377 477238442 477238665 1.570000e-43 187.0
14 TraesCS5A01G511900 chr1B 85.779 2651 270 64 1 2581 664806656 664809269 0.000000e+00 2708.0
15 TraesCS5A01G511900 chr1B 81.149 801 103 31 11 792 664809716 664810487 1.700000e-167 599.0
16 TraesCS5A01G511900 chr1A 88.013 1827 183 17 789 2581 573441115 573442939 0.000000e+00 2128.0
17 TraesCS5A01G511900 chr1A 81.851 821 108 28 1 794 573440284 573441090 0.000000e+00 652.0
18 TraesCS5A01G511900 chr1A 89.375 160 14 3 2422 2579 573439936 573440094 7.250000e-47 198.0
19 TraesCS5A01G511900 chr1A 81.667 240 32 5 2180 2409 573392824 573393061 4.360000e-44 189.0
20 TraesCS5A01G511900 chr3A 71.858 899 189 48 1310 2182 434950939 434950079 2.020000e-47 200.0
21 TraesCS5A01G511900 chr7D 79.888 179 21 8 2580 2744 54355043 54355220 2.090000e-22 117.0
22 TraesCS5A01G511900 chr7D 78.378 185 25 9 2581 2750 401186115 401185931 4.520000e-19 106.0
23 TraesCS5A01G511900 chr6B 77.095 179 26 9 2581 2744 29421158 29421336 4.550000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G511900 chr5A 675780056 675783366 3310 False 2683.000000 5203 100.00000 1 3311 2 chr5A.!!$F3 3310
1 TraesCS5A01G511900 chr4D 496694799 496697621 2822 False 4194.000000 4194 93.55000 1 2817 1 chr4D.!!$F1 2816
2 TraesCS5A01G511900 chr4B 636736282 636738823 2541 False 3522.000000 3522 91.70200 1 2563 1 chr4B.!!$F1 2562
3 TraesCS5A01G511900 chr1D 477238107 477244559 6452 False 980.250000 2732 85.23975 1 2581 4 chr1D.!!$F1 2580
4 TraesCS5A01G511900 chr1B 664806656 664810487 3831 False 1653.500000 2708 83.46400 1 2581 2 chr1B.!!$F1 2580
5 TraesCS5A01G511900 chr1A 573439936 573442939 3003 False 992.666667 2128 86.41300 1 2581 3 chr1A.!!$F2 2580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 2140 1.594293 CAAAGCGTGGACTGGACGT 60.594 57.895 0.0 0.0 39.08 4.34 F
1422 2845 0.252761 TGGATCTCGCCATCAAGCAA 59.747 50.000 0.0 0.0 31.66 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 3680 0.175531 TCGCCGATGCTCATCTTCAA 59.824 50.0 8.09 0.0 35.72 2.69 R
3272 6866 0.109412 GCTGCCAGATGTGTGAAAGC 60.109 55.0 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 1401 7.151308 TCAATTAATTCCAAAATTGACAGCGT 58.849 30.769 9.15 0.00 43.59 5.07
260 1581 8.255394 ACAATAAATATTTTTGCTGCTGGAAC 57.745 30.769 5.91 0.00 0.00 3.62
504 1839 8.557864 CAAATAAAGTGGCATGTTTTCAATTCA 58.442 29.630 3.49 0.00 0.00 2.57
566 1905 6.744906 GCATGCCATAATCATATTGGGGTTTT 60.745 38.462 6.36 0.00 0.00 2.43
627 1966 4.096003 CCCGGTTCTGCCCACGAT 62.096 66.667 0.00 0.00 0.00 3.73
629 1968 2.579201 CGGTTCTGCCCACGATCT 59.421 61.111 0.00 0.00 0.00 2.75
784 2140 1.594293 CAAAGCGTGGACTGGACGT 60.594 57.895 0.00 0.00 39.08 4.34
806 2192 2.967076 ACACACAGCCTTCACGCG 60.967 61.111 3.53 3.53 0.00 6.01
1307 2730 3.456431 CTGGCGAGCTCTACCGTCG 62.456 68.421 12.85 0.00 36.77 5.12
1422 2845 0.252761 TGGATCTCGCCATCAAGCAA 59.747 50.000 0.00 0.00 31.66 3.91
1593 3016 3.009033 TCTCATTTCAAAGGGTCACCGAT 59.991 43.478 0.00 0.00 43.47 4.18
1665 3088 1.600107 GGTGGCCGTGAACTCCATA 59.400 57.895 0.00 0.00 31.83 2.74
1671 3094 2.016604 GCCGTGAACTCCATATGCCAA 61.017 52.381 0.00 0.00 0.00 4.52
1698 3121 1.995626 CCTCCTGGTGAACCCGGAT 60.996 63.158 12.47 0.00 46.32 4.18
1810 3233 4.025401 CGGACCACAACAAGCCGC 62.025 66.667 0.00 0.00 35.17 6.53
2112 3535 3.000819 TCCGGCACTGGATTCCGT 61.001 61.111 0.00 0.00 41.46 4.69
2239 3680 1.635663 GCACGCCGATAAGCACAAGT 61.636 55.000 0.00 0.00 0.00 3.16
2326 3767 1.385528 GTGACATGCATGCATCCTGA 58.614 50.000 30.07 9.97 33.90 3.86
2401 3849 5.909621 TGTTAGTTAGTCGGAGCTTATGT 57.090 39.130 0.00 0.00 0.00 2.29
2415 3867 4.486090 AGCTTATGTTGTAGTCGTGAGTG 58.514 43.478 0.00 0.00 0.00 3.51
2423 3912 1.066136 TAGTCGTGAGTGAGTCGTCG 58.934 55.000 0.00 0.00 0.00 5.12
2434 3923 2.552743 GTGAGTCGTCGGATGGATATCA 59.447 50.000 4.83 0.00 34.90 2.15
2439 3928 3.253677 GTCGTCGGATGGATATCAGTCTT 59.746 47.826 4.83 0.00 34.90 3.01
2464 3953 6.708502 TGGTCAATAAAGTGTCGATCTCAAAA 59.291 34.615 0.00 0.00 0.00 2.44
2466 3955 8.237267 GGTCAATAAAGTGTCGATCTCAAAATT 58.763 33.333 0.00 0.00 0.00 1.82
2470 3959 9.965824 AATAAAGTGTCGATCTCAAAATTTGTT 57.034 25.926 5.56 0.00 0.00 2.83
2537 4027 6.417635 ACAGTTAATTTGTTTCATCAGTTGCG 59.582 34.615 0.00 0.00 0.00 4.85
2639 4135 2.109126 GGTCTGTGCGCTCCCATTC 61.109 63.158 9.73 0.00 0.00 2.67
2654 5931 5.474532 GCTCCCATTCTAATTATGCACATGA 59.525 40.000 0.00 0.00 0.00 3.07
2668 5945 6.832520 ATGCACATGATTTAACAACTACCA 57.167 33.333 0.00 0.00 0.00 3.25
2673 5950 9.236691 GCACATGATTTAACAACTACCATTATG 57.763 33.333 0.00 0.00 0.00 1.90
2686 5963 8.548721 CAACTACCATTATGTACGAGGAAATTC 58.451 37.037 0.00 0.00 0.00 2.17
2691 5968 6.857964 CCATTATGTACGAGGAAATTCAATGC 59.142 38.462 0.00 0.00 0.00 3.56
2694 5971 3.938963 TGTACGAGGAAATTCAATGCCTC 59.061 43.478 8.80 8.80 42.71 4.70
2727 6004 6.528537 TTATGCAATCACCAGCAAGTAAAT 57.471 33.333 0.00 0.00 44.88 1.40
2735 6012 4.830046 TCACCAGCAAGTAAATTAGGCAAA 59.170 37.500 0.00 0.00 0.00 3.68
2790 6384 8.774890 TTGTTAATTAATACGCAGTCAGGTTA 57.225 30.769 0.31 0.00 43.93 2.85
2800 6394 5.169295 ACGCAGTCAGGTTAAGAGATTTAC 58.831 41.667 0.00 0.00 29.74 2.01
3247 6841 5.622378 GTGTTTGATCTCCTTCATTTCGTC 58.378 41.667 0.00 0.00 0.00 4.20
3250 6844 4.033990 TGATCTCCTTCATTTCGTCGAG 57.966 45.455 0.00 0.00 0.00 4.04
3251 6845 2.279582 TCTCCTTCATTTCGTCGAGC 57.720 50.000 0.00 0.00 0.00 5.03
3252 6846 1.544246 TCTCCTTCATTTCGTCGAGCA 59.456 47.619 0.00 0.00 0.00 4.26
3253 6847 2.029380 TCTCCTTCATTTCGTCGAGCAA 60.029 45.455 0.00 0.00 0.00 3.91
3254 6848 2.066262 TCCTTCATTTCGTCGAGCAAC 58.934 47.619 0.00 0.00 0.00 4.17
3255 6849 1.201812 CCTTCATTTCGTCGAGCAACG 60.202 52.381 0.00 0.44 43.92 4.10
3256 6850 0.162933 TTCATTTCGTCGAGCAACGC 59.837 50.000 0.00 0.00 42.31 4.84
3257 6851 0.941936 TCATTTCGTCGAGCAACGCA 60.942 50.000 0.00 0.00 42.31 5.24
3258 6852 0.517132 CATTTCGTCGAGCAACGCAG 60.517 55.000 0.00 0.00 42.31 5.18
3259 6853 0.666274 ATTTCGTCGAGCAACGCAGA 60.666 50.000 0.00 0.45 42.31 4.26
3260 6854 1.275471 TTTCGTCGAGCAACGCAGAG 61.275 55.000 0.00 0.00 42.31 3.35
3261 6855 3.175240 CGTCGAGCAACGCAGAGG 61.175 66.667 0.00 0.00 42.26 3.69
3262 6856 3.482783 GTCGAGCAACGCAGAGGC 61.483 66.667 0.00 0.00 42.26 4.70
3264 6858 4.749310 CGAGCAACGCAGAGGCCT 62.749 66.667 3.86 3.86 36.38 5.19
3265 6859 2.817396 GAGCAACGCAGAGGCCTC 60.817 66.667 26.22 26.22 36.38 4.70
3266 6860 4.749310 AGCAACGCAGAGGCCTCG 62.749 66.667 26.95 21.40 36.38 4.63
3268 6862 4.069232 CAACGCAGAGGCCTCGGA 62.069 66.667 33.73 0.00 36.38 4.55
3269 6863 3.077556 AACGCAGAGGCCTCGGAT 61.078 61.111 33.73 19.04 36.38 4.18
3270 6864 1.756950 AACGCAGAGGCCTCGGATA 60.757 57.895 33.73 0.00 36.38 2.59
3271 6865 1.739338 AACGCAGAGGCCTCGGATAG 61.739 60.000 33.73 24.31 36.38 2.08
3281 6875 1.941325 CCTCGGATAGGCTTTCACAC 58.059 55.000 7.27 0.00 38.97 3.82
3282 6876 1.207089 CCTCGGATAGGCTTTCACACA 59.793 52.381 7.27 0.00 38.97 3.72
3283 6877 2.158900 CCTCGGATAGGCTTTCACACAT 60.159 50.000 7.27 0.00 38.97 3.21
3284 6878 3.126831 CTCGGATAGGCTTTCACACATC 58.873 50.000 7.27 0.00 0.00 3.06
3285 6879 2.766263 TCGGATAGGCTTTCACACATCT 59.234 45.455 7.27 0.00 0.00 2.90
3286 6880 2.868583 CGGATAGGCTTTCACACATCTG 59.131 50.000 7.27 0.00 0.00 2.90
3287 6881 3.209410 GGATAGGCTTTCACACATCTGG 58.791 50.000 7.27 0.00 0.00 3.86
3288 6882 2.113860 TAGGCTTTCACACATCTGGC 57.886 50.000 0.00 0.00 0.00 4.85
3289 6883 0.111061 AGGCTTTCACACATCTGGCA 59.889 50.000 0.00 0.00 0.00 4.92
3290 6884 0.524862 GGCTTTCACACATCTGGCAG 59.475 55.000 8.58 8.58 0.00 4.85
3291 6885 0.109412 GCTTTCACACATCTGGCAGC 60.109 55.000 10.34 0.00 0.00 5.25
3292 6886 1.241165 CTTTCACACATCTGGCAGCA 58.759 50.000 10.34 0.00 0.00 4.41
3293 6887 1.610038 CTTTCACACATCTGGCAGCAA 59.390 47.619 10.34 0.00 0.00 3.91
3294 6888 1.913778 TTCACACATCTGGCAGCAAT 58.086 45.000 10.34 0.00 0.00 3.56
3295 6889 1.456296 TCACACATCTGGCAGCAATC 58.544 50.000 10.34 0.00 0.00 2.67
3296 6890 1.170442 CACACATCTGGCAGCAATCA 58.830 50.000 10.34 0.00 0.00 2.57
3297 6891 1.542472 CACACATCTGGCAGCAATCAA 59.458 47.619 10.34 0.00 0.00 2.57
3298 6892 2.165641 CACACATCTGGCAGCAATCAAT 59.834 45.455 10.34 0.00 0.00 2.57
3299 6893 2.165641 ACACATCTGGCAGCAATCAATG 59.834 45.455 10.34 9.74 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
242 1563 3.088532 TCGGTTCCAGCAGCAAAAATAT 58.911 40.909 0.00 0.00 0.00 1.28
260 1581 2.653953 ATCCCCGCATTAACCGTCGG 62.654 60.000 10.48 10.48 41.41 4.79
357 1686 1.298667 GAAAACTAGGGCCCGAGCA 59.701 57.895 30.10 9.91 42.56 4.26
566 1905 1.302192 GTCCGTGCCAGGCTTACAA 60.302 57.895 14.15 0.00 0.00 2.41
615 1954 0.391661 GCTCAAGATCGTGGGCAGAA 60.392 55.000 26.04 0.00 44.91 3.02
621 1960 0.178767 TGGATGGCTCAAGATCGTGG 59.821 55.000 8.84 1.26 0.00 4.94
622 1961 2.028420 TTGGATGGCTCAAGATCGTG 57.972 50.000 1.76 1.76 0.00 4.35
623 1962 3.287867 AATTGGATGGCTCAAGATCGT 57.712 42.857 0.00 0.00 0.00 3.73
624 1963 3.794475 GCAAATTGGATGGCTCAAGATCG 60.794 47.826 0.00 0.00 0.00 3.69
625 1964 3.383825 AGCAAATTGGATGGCTCAAGATC 59.616 43.478 0.00 0.00 28.71 2.75
626 1965 3.371965 AGCAAATTGGATGGCTCAAGAT 58.628 40.909 0.00 0.00 28.71 2.40
627 1966 2.811410 AGCAAATTGGATGGCTCAAGA 58.189 42.857 0.00 0.00 28.71 3.02
629 1968 2.234414 GGAAGCAAATTGGATGGCTCAA 59.766 45.455 0.00 0.00 35.11 3.02
784 2140 1.378531 GTGAAGGCTGTGTGTGTGAA 58.621 50.000 0.00 0.00 0.00 3.18
904 2294 1.000771 CCTGGACGGACTGGAGAGA 60.001 63.158 0.00 0.00 33.16 3.10
958 2369 4.767255 GGCTGGGTCGAGGCAGTG 62.767 72.222 1.98 0.00 38.40 3.66
1039 2462 1.841302 ATGTTCTCCGCTTCCTGGCA 61.841 55.000 0.00 0.00 0.00 4.92
1063 2486 3.632604 TGAAGGACGTGGATGAGATAGAC 59.367 47.826 0.00 0.00 0.00 2.59
1254 2677 1.516603 GTCCAGCGCGAAGGAGTAC 60.517 63.158 18.58 6.10 33.85 2.73
1256 2679 4.421479 CGTCCAGCGCGAAGGAGT 62.421 66.667 18.58 0.00 33.85 3.85
1307 2730 2.588034 GCCCCGCATCGTAGAACC 60.588 66.667 0.00 0.00 43.58 3.62
1452 2875 2.444706 CCAGGGCGGATGGAGAGA 60.445 66.667 0.00 0.00 40.51 3.10
1593 3016 2.527624 AGCTGGTCCAGGCTGTCA 60.528 61.111 20.72 7.89 37.41 3.58
1665 3088 3.628646 GAGGCGGTGGAGTTGGCAT 62.629 63.158 0.00 0.00 0.00 4.40
1671 3094 4.640690 ACCAGGAGGCGGTGGAGT 62.641 66.667 9.44 0.00 39.06 3.85
1698 3121 3.356639 GAGAGACGTGGATGCGGCA 62.357 63.158 4.58 4.58 43.41 5.69
1810 3233 3.414700 GAAGCGTGTCACCAGCCG 61.415 66.667 0.00 0.00 0.00 5.52
1926 3349 2.373335 AGATCTCCCTCTGCACGTAT 57.627 50.000 0.00 0.00 0.00 3.06
2067 3490 2.912025 ACAAACTTGGCGGCCTGG 60.912 61.111 21.46 14.66 0.00 4.45
2103 3526 0.252057 TCTCCTGGACACGGAATCCA 60.252 55.000 0.00 4.70 44.20 3.41
2112 3535 3.147595 CCGCCGATCTCCTGGACA 61.148 66.667 0.00 0.00 0.00 4.02
2154 3577 3.566210 ACCGTGAACAGGGGGTGG 61.566 66.667 16.13 0.00 40.49 4.61
2239 3680 0.175531 TCGCCGATGCTCATCTTCAA 59.824 50.000 8.09 0.00 35.72 2.69
2290 3731 2.740055 CGCTCTTTCACTGCGCCT 60.740 61.111 4.18 0.00 43.08 5.52
2308 3749 2.358322 ATCAGGATGCATGCATGTCA 57.642 45.000 36.73 23.45 36.70 3.58
2326 3767 9.840427 CCAACGACTCTTAACAATTATTCAAAT 57.160 29.630 0.00 0.00 0.00 2.32
2365 3813 8.363755 CGACTAACTAACAAACTAAACTCGATG 58.636 37.037 0.00 0.00 0.00 3.84
2401 3849 2.216046 ACGACTCACTCACGACTACAA 58.784 47.619 0.00 0.00 0.00 2.41
2415 3867 2.814919 ACTGATATCCATCCGACGACTC 59.185 50.000 0.00 0.00 0.00 3.36
2423 3912 4.963318 TGACCAAGACTGATATCCATCC 57.037 45.455 0.00 0.00 0.00 3.51
2434 3923 5.209818 TCGACACTTTATTGACCAAGACT 57.790 39.130 0.00 0.00 0.00 3.24
2439 3928 5.400066 TGAGATCGACACTTTATTGACCA 57.600 39.130 0.00 0.00 0.00 4.02
2464 3953 6.525578 TGACGACACTATCTCCTAACAAAT 57.474 37.500 0.00 0.00 0.00 2.32
2466 3955 6.405508 GGAATGACGACACTATCTCCTAACAA 60.406 42.308 0.00 0.00 0.00 2.83
2470 3959 5.050126 AGGAATGACGACACTATCTCCTA 57.950 43.478 0.00 0.00 30.24 2.94
2537 4027 3.539604 AGCAAGCAACCATGATCTACTC 58.460 45.455 0.00 0.00 0.00 2.59
2610 4106 1.079127 CACAGACCCGCCTTAGGTG 60.079 63.158 4.57 4.57 37.88 4.00
2623 4119 0.901827 TTAGAATGGGAGCGCACAGA 59.098 50.000 11.47 0.00 0.00 3.41
2654 5931 9.321562 CCTCGTACATAATGGTAGTTGTTAAAT 57.678 33.333 0.00 0.00 0.00 1.40
2668 5945 6.772716 AGGCATTGAATTTCCTCGTACATAAT 59.227 34.615 0.00 0.00 0.00 1.28
2673 5950 3.938963 TGAGGCATTGAATTTCCTCGTAC 59.061 43.478 14.68 0.00 46.10 3.67
2686 5963 7.367159 TGCATAAAGAAATTTTGAGGCATTG 57.633 32.000 0.00 0.00 0.00 2.82
2691 5968 7.603404 TGGTGATTGCATAAAGAAATTTTGAGG 59.397 33.333 0.00 0.00 0.00 3.86
2694 5971 7.095144 TGCTGGTGATTGCATAAAGAAATTTTG 60.095 33.333 0.00 0.00 33.94 2.44
2735 6012 4.501400 GCCAAACTAGTTTGTGGCATTTCT 60.501 41.667 34.83 5.09 46.19 2.52
2790 6384 2.851263 TGTGGGTGCGTAAATCTCTT 57.149 45.000 0.00 0.00 0.00 2.85
3223 6817 4.152402 ACGAAATGAAGGAGATCAAACACG 59.848 41.667 0.00 0.00 32.06 4.49
3224 6818 5.613358 ACGAAATGAAGGAGATCAAACAC 57.387 39.130 0.00 0.00 32.06 3.32
3225 6819 4.388773 CGACGAAATGAAGGAGATCAAACA 59.611 41.667 0.00 0.00 32.06 2.83
3226 6820 4.625742 TCGACGAAATGAAGGAGATCAAAC 59.374 41.667 0.00 0.00 32.06 2.93
3227 6821 4.816392 TCGACGAAATGAAGGAGATCAAA 58.184 39.130 0.00 0.00 32.06 2.69
3228 6822 4.424626 CTCGACGAAATGAAGGAGATCAA 58.575 43.478 0.00 0.00 32.06 2.57
3229 6823 3.735208 GCTCGACGAAATGAAGGAGATCA 60.735 47.826 0.00 0.00 0.00 2.92
3230 6824 2.792116 GCTCGACGAAATGAAGGAGATC 59.208 50.000 0.00 0.00 0.00 2.75
3233 6827 1.996292 TGCTCGACGAAATGAAGGAG 58.004 50.000 0.00 0.00 0.00 3.69
3234 6828 2.066262 GTTGCTCGACGAAATGAAGGA 58.934 47.619 0.00 0.00 0.00 3.36
3235 6829 1.201812 CGTTGCTCGACGAAATGAAGG 60.202 52.381 3.69 0.00 45.47 3.46
3237 6831 0.162933 GCGTTGCTCGACGAAATGAA 59.837 50.000 13.33 0.00 45.47 2.57
3238 6832 0.941936 TGCGTTGCTCGACGAAATGA 60.942 50.000 13.33 0.00 45.47 2.57
3241 6835 1.275471 CTCTGCGTTGCTCGACGAAA 61.275 55.000 13.33 0.48 45.47 3.46
3242 6836 1.729484 CTCTGCGTTGCTCGACGAA 60.729 57.895 13.33 2.01 45.47 3.85
3243 6837 2.126850 CTCTGCGTTGCTCGACGA 60.127 61.111 13.33 0.00 45.47 4.20
3247 6841 4.749310 AGGCCTCTGCGTTGCTCG 62.749 66.667 0.00 0.00 43.12 5.03
3251 6845 2.016393 TATCCGAGGCCTCTGCGTTG 62.016 60.000 29.73 13.29 38.85 4.10
3252 6846 1.739338 CTATCCGAGGCCTCTGCGTT 61.739 60.000 29.73 13.84 38.85 4.84
3253 6847 2.123854 TATCCGAGGCCTCTGCGT 60.124 61.111 29.73 17.07 38.85 5.24
3254 6848 2.647875 CTATCCGAGGCCTCTGCG 59.352 66.667 29.73 17.83 38.85 5.18
3255 6849 3.055580 CCTATCCGAGGCCTCTGC 58.944 66.667 29.73 5.43 38.96 4.26
3264 6858 2.766263 AGATGTGTGAAAGCCTATCCGA 59.234 45.455 0.00 0.00 0.00 4.55
3265 6859 2.868583 CAGATGTGTGAAAGCCTATCCG 59.131 50.000 0.00 0.00 0.00 4.18
3266 6860 3.209410 CCAGATGTGTGAAAGCCTATCC 58.791 50.000 0.00 0.00 0.00 2.59
3267 6861 2.615912 GCCAGATGTGTGAAAGCCTATC 59.384 50.000 0.00 0.00 0.00 2.08
3268 6862 2.025981 TGCCAGATGTGTGAAAGCCTAT 60.026 45.455 0.00 0.00 0.00 2.57
3269 6863 1.350684 TGCCAGATGTGTGAAAGCCTA 59.649 47.619 0.00 0.00 0.00 3.93
3270 6864 0.111061 TGCCAGATGTGTGAAAGCCT 59.889 50.000 0.00 0.00 0.00 4.58
3271 6865 0.524862 CTGCCAGATGTGTGAAAGCC 59.475 55.000 0.00 0.00 0.00 4.35
3272 6866 0.109412 GCTGCCAGATGTGTGAAAGC 60.109 55.000 0.00 0.00 0.00 3.51
3273 6867 1.241165 TGCTGCCAGATGTGTGAAAG 58.759 50.000 0.00 0.00 0.00 2.62
3274 6868 1.689984 TTGCTGCCAGATGTGTGAAA 58.310 45.000 0.00 0.00 0.00 2.69
3275 6869 1.814394 GATTGCTGCCAGATGTGTGAA 59.186 47.619 0.00 0.00 0.00 3.18
3276 6870 1.271488 TGATTGCTGCCAGATGTGTGA 60.271 47.619 0.00 0.00 0.00 3.58
3277 6871 1.170442 TGATTGCTGCCAGATGTGTG 58.830 50.000 0.00 0.00 0.00 3.82
3278 6872 1.913778 TTGATTGCTGCCAGATGTGT 58.086 45.000 0.00 0.00 0.00 3.72
3279 6873 2.809446 CATTGATTGCTGCCAGATGTG 58.191 47.619 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.