Multiple sequence alignment - TraesCS5A01G511400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G511400 chr5A 100.000 2567 0 0 1 2567 674936370 674938936 0.000000e+00 4741
1 TraesCS5A01G511400 chr5A 79.317 556 84 18 1021 1568 674852036 674852568 6.750000e-96 361
2 TraesCS5A01G511400 chr5A 79.317 556 84 18 1021 1568 674893248 674893780 6.750000e-96 361
3 TraesCS5A01G511400 chr5A 78.893 578 87 16 995 1568 675319630 675319084 2.430000e-95 359
4 TraesCS5A01G511400 chr5A 88.889 90 6 2 793 881 674937020 674937106 9.710000e-20 108
5 TraesCS5A01G511400 chr5A 88.889 90 6 2 651 737 674937162 674937250 9.710000e-20 108
6 TraesCS5A01G511400 chr4D 93.099 1710 96 15 735 2427 495129322 495131026 0.000000e+00 2484
7 TraesCS5A01G511400 chr4D 87.277 448 44 9 282 723 495127690 495128130 1.370000e-137 499
8 TraesCS5A01G511400 chr4D 78.117 754 119 33 823 1568 495074279 495074994 1.090000e-118 436
9 TraesCS5A01G511400 chr4D 79.863 586 87 16 995 1568 495520366 495520932 1.430000e-107 399
10 TraesCS5A01G511400 chr4D 95.041 121 6 0 2447 2567 495146471 495146591 9.370000e-45 191
11 TraesCS5A01G511400 chr4B 91.197 1704 104 19 681 2367 635029594 635031268 0.000000e+00 2274
12 TraesCS5A01G511400 chr4B 86.785 507 56 8 176 679 635027526 635028024 2.890000e-154 555
13 TraesCS5A01G511400 chr4B 81.284 545 72 22 1036 1568 635006275 635006801 5.110000e-112 414
14 TraesCS5A01G511400 chr4B 79.322 590 87 15 995 1568 635460564 635461134 5.180000e-102 381
15 TraesCS5A01G511400 chr4B 91.736 121 10 0 2447 2567 635043115 635043235 4.390000e-38 169
16 TraesCS5A01G511400 chr4B 94.667 75 4 0 2361 2435 635042192 635042266 1.610000e-22 117
17 TraesCS5A01G511400 chrUn 79.317 556 84 18 1021 1568 283623695 283624227 6.750000e-96 361
18 TraesCS5A01G511400 chr7A 98.182 165 3 0 1 165 526823567 526823731 3.230000e-74 289
19 TraesCS5A01G511400 chr7A 98.171 164 3 0 1 164 690093797 690093634 1.160000e-73 287
20 TraesCS5A01G511400 chr7A 96.491 171 5 1 1 170 437630745 437630575 5.410000e-72 281
21 TraesCS5A01G511400 chr2A 98.171 164 3 0 1 164 262012040 262011877 1.160000e-73 287
22 TraesCS5A01G511400 chr2A 98.160 163 3 0 1 163 262037404 262037242 4.180000e-73 285
23 TraesCS5A01G511400 chr2A 96.491 171 6 0 1 171 564198975 564199145 1.500000e-72 283
24 TraesCS5A01G511400 chr1A 98.171 164 3 0 1 164 571691627 571691790 1.160000e-73 287
25 TraesCS5A01G511400 chr6A 97.041 169 5 0 1 169 586249319 586249151 4.180000e-73 285
26 TraesCS5A01G511400 chr4A 96.970 165 5 0 1 165 683533998 683534162 7.000000e-71 278
27 TraesCS5A01G511400 chr2D 85.124 242 31 4 165 401 33913935 33914176 2.550000e-60 243
28 TraesCS5A01G511400 chr7D 85.062 241 29 5 165 400 139108593 139108831 3.300000e-59 239
29 TraesCS5A01G511400 chr7D 84.052 232 32 3 174 400 30755889 30756120 4.300000e-53 219
30 TraesCS5A01G511400 chr7B 86.486 222 23 6 165 381 703244008 703244227 1.190000e-58 237
31 TraesCS5A01G511400 chr5B 84.519 239 31 4 165 398 603987146 603986909 5.520000e-57 231
32 TraesCS5A01G511400 chr6D 83.884 242 33 4 166 401 10721706 10721947 2.570000e-55 226
33 TraesCS5A01G511400 chr3B 82.857 245 35 6 163 401 611725795 611726038 2.000000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G511400 chr5A 674936370 674938936 2566 False 1652.333333 4741 92.592667 1 2567 3 chr5A.!!$F3 2566
1 TraesCS5A01G511400 chr5A 674852036 674852568 532 False 361.000000 361 79.317000 1021 1568 1 chr5A.!!$F1 547
2 TraesCS5A01G511400 chr5A 674893248 674893780 532 False 361.000000 361 79.317000 1021 1568 1 chr5A.!!$F2 547
3 TraesCS5A01G511400 chr5A 675319084 675319630 546 True 359.000000 359 78.893000 995 1568 1 chr5A.!!$R1 573
4 TraesCS5A01G511400 chr4D 495127690 495131026 3336 False 1491.500000 2484 90.188000 282 2427 2 chr4D.!!$F4 2145
5 TraesCS5A01G511400 chr4D 495074279 495074994 715 False 436.000000 436 78.117000 823 1568 1 chr4D.!!$F1 745
6 TraesCS5A01G511400 chr4D 495520366 495520932 566 False 399.000000 399 79.863000 995 1568 1 chr4D.!!$F3 573
7 TraesCS5A01G511400 chr4B 635027526 635031268 3742 False 1414.500000 2274 88.991000 176 2367 2 chr4B.!!$F3 2191
8 TraesCS5A01G511400 chr4B 635006275 635006801 526 False 414.000000 414 81.284000 1036 1568 1 chr4B.!!$F1 532
9 TraesCS5A01G511400 chr4B 635460564 635461134 570 False 381.000000 381 79.322000 995 1568 1 chr4B.!!$F2 573
10 TraesCS5A01G511400 chrUn 283623695 283624227 532 False 361.000000 361 79.317000 1021 1568 1 chrUn.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
238 241 0.037326 TGTCATCGACAAGGTCAGGC 60.037 55.0 0.0 0.0 39.78 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 4919 0.038166 TTAGTAGTCCACCGACCCGT 59.962 55.0 0.0 0.0 40.12 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.530701 GGAGGAGATATCCATGTCCGT 58.469 52.381 9.50 0.00 46.87 4.69
21 22 3.698289 GGAGGAGATATCCATGTCCGTA 58.302 50.000 9.50 0.00 46.87 4.02
22 23 3.444388 GGAGGAGATATCCATGTCCGTAC 59.556 52.174 9.50 0.00 46.87 3.67
23 24 4.337145 GAGGAGATATCCATGTCCGTACT 58.663 47.826 9.50 0.00 46.87 2.73
24 25 4.082845 AGGAGATATCCATGTCCGTACTG 58.917 47.826 9.50 0.00 46.87 2.74
25 26 3.367498 GGAGATATCCATGTCCGTACTGC 60.367 52.174 0.18 0.00 35.09 4.40
26 27 2.563179 AGATATCCATGTCCGTACTGCC 59.437 50.000 0.00 0.00 0.00 4.85
27 28 2.082140 TATCCATGTCCGTACTGCCT 57.918 50.000 0.00 0.00 0.00 4.75
28 29 2.082140 ATCCATGTCCGTACTGCCTA 57.918 50.000 0.00 0.00 0.00 3.93
29 30 1.399714 TCCATGTCCGTACTGCCTAG 58.600 55.000 0.00 0.00 0.00 3.02
30 31 0.249489 CCATGTCCGTACTGCCTAGC 60.249 60.000 0.00 0.00 0.00 3.42
31 32 0.747255 CATGTCCGTACTGCCTAGCT 59.253 55.000 0.00 0.00 0.00 3.32
32 33 1.137086 CATGTCCGTACTGCCTAGCTT 59.863 52.381 0.00 0.00 0.00 3.74
33 34 0.530744 TGTCCGTACTGCCTAGCTTG 59.469 55.000 0.00 0.00 0.00 4.01
34 35 0.806492 GTCCGTACTGCCTAGCTTGC 60.806 60.000 0.00 0.00 0.00 4.01
35 36 1.521681 CCGTACTGCCTAGCTTGCC 60.522 63.158 0.00 0.00 0.00 4.52
36 37 1.517832 CGTACTGCCTAGCTTGCCT 59.482 57.895 0.00 0.00 0.00 4.75
37 38 0.108138 CGTACTGCCTAGCTTGCCTT 60.108 55.000 0.00 0.00 0.00 4.35
38 39 1.657822 GTACTGCCTAGCTTGCCTTC 58.342 55.000 0.00 0.00 0.00 3.46
39 40 0.541863 TACTGCCTAGCTTGCCTTCC 59.458 55.000 0.00 0.00 0.00 3.46
40 41 1.300963 CTGCCTAGCTTGCCTTCCA 59.699 57.895 0.00 0.00 0.00 3.53
41 42 1.002134 TGCCTAGCTTGCCTTCCAC 60.002 57.895 0.00 0.00 0.00 4.02
42 43 2.109126 GCCTAGCTTGCCTTCCACG 61.109 63.158 0.00 0.00 0.00 4.94
43 44 2.109126 CCTAGCTTGCCTTCCACGC 61.109 63.158 0.00 0.00 38.87 5.34
44 45 2.046314 TAGCTTGCCTTCCACGCC 60.046 61.111 0.00 0.00 39.36 5.68
45 46 2.803155 CTAGCTTGCCTTCCACGCCA 62.803 60.000 0.00 0.00 39.36 5.69
46 47 2.404566 TAGCTTGCCTTCCACGCCAA 62.405 55.000 0.00 0.00 39.36 4.52
47 48 2.956987 CTTGCCTTCCACGCCAAG 59.043 61.111 0.00 0.00 0.00 3.61
48 49 1.898574 CTTGCCTTCCACGCCAAGT 60.899 57.895 0.00 0.00 0.00 3.16
49 50 0.605319 CTTGCCTTCCACGCCAAGTA 60.605 55.000 0.00 0.00 0.00 2.24
50 51 0.605319 TTGCCTTCCACGCCAAGTAG 60.605 55.000 0.00 0.00 0.00 2.57
51 52 1.295423 GCCTTCCACGCCAAGTAGA 59.705 57.895 0.00 0.00 0.00 2.59
52 53 0.741221 GCCTTCCACGCCAAGTAGAG 60.741 60.000 0.00 0.00 0.00 2.43
53 54 0.608640 CCTTCCACGCCAAGTAGAGT 59.391 55.000 0.00 0.00 0.00 3.24
54 55 1.404315 CCTTCCACGCCAAGTAGAGTC 60.404 57.143 0.00 0.00 0.00 3.36
55 56 0.606604 TTCCACGCCAAGTAGAGTCC 59.393 55.000 0.00 0.00 0.00 3.85
56 57 1.218316 CCACGCCAAGTAGAGTCCC 59.782 63.158 0.00 0.00 0.00 4.46
57 58 1.541310 CCACGCCAAGTAGAGTCCCA 61.541 60.000 0.00 0.00 0.00 4.37
58 59 0.537188 CACGCCAAGTAGAGTCCCAT 59.463 55.000 0.00 0.00 0.00 4.00
59 60 0.824759 ACGCCAAGTAGAGTCCCATC 59.175 55.000 0.00 0.00 0.00 3.51
60 61 0.105039 CGCCAAGTAGAGTCCCATCC 59.895 60.000 0.00 0.00 0.00 3.51
61 62 0.105039 GCCAAGTAGAGTCCCATCCG 59.895 60.000 0.00 0.00 0.00 4.18
62 63 0.753262 CCAAGTAGAGTCCCATCCGG 59.247 60.000 0.00 0.00 0.00 5.14
63 64 1.688311 CCAAGTAGAGTCCCATCCGGA 60.688 57.143 6.61 6.61 38.83 5.14
70 71 2.357446 TCCCATCCGGACACGAGA 59.643 61.111 6.12 0.00 44.60 4.04
71 72 2.050350 TCCCATCCGGACACGAGAC 61.050 63.158 6.12 0.00 44.60 3.36
72 73 2.348104 CCCATCCGGACACGAGACA 61.348 63.158 6.12 0.00 44.60 3.41
73 74 1.589630 CCATCCGGACACGAGACAA 59.410 57.895 6.12 0.00 44.60 3.18
74 75 0.037697 CCATCCGGACACGAGACAAA 60.038 55.000 6.12 0.00 44.60 2.83
75 76 1.350193 CATCCGGACACGAGACAAAG 58.650 55.000 6.12 0.00 44.60 2.77
76 77 0.966920 ATCCGGACACGAGACAAAGT 59.033 50.000 6.12 0.00 44.60 2.66
77 78 0.313043 TCCGGACACGAGACAAAGTC 59.687 55.000 0.00 0.00 44.60 3.01
78 79 0.314302 CCGGACACGAGACAAAGTCT 59.686 55.000 0.00 0.00 46.42 3.24
79 80 1.269621 CCGGACACGAGACAAAGTCTT 60.270 52.381 0.00 0.00 43.53 3.01
80 81 2.052157 CGGACACGAGACAAAGTCTTC 58.948 52.381 0.70 0.00 43.53 2.87
81 82 2.543031 CGGACACGAGACAAAGTCTTCA 60.543 50.000 0.70 0.00 43.53 3.02
82 83 3.454375 GGACACGAGACAAAGTCTTCAA 58.546 45.455 0.70 0.00 43.53 2.69
83 84 4.058817 GGACACGAGACAAAGTCTTCAAT 58.941 43.478 0.70 0.00 43.53 2.57
84 85 4.150804 GGACACGAGACAAAGTCTTCAATC 59.849 45.833 0.70 0.00 43.53 2.67
85 86 4.950050 ACACGAGACAAAGTCTTCAATCT 58.050 39.130 0.70 0.00 43.53 2.40
86 87 5.360591 ACACGAGACAAAGTCTTCAATCTT 58.639 37.500 0.70 0.00 43.53 2.40
87 88 5.235186 ACACGAGACAAAGTCTTCAATCTTG 59.765 40.000 0.70 6.47 43.53 3.02
88 89 5.235186 CACGAGACAAAGTCTTCAATCTTGT 59.765 40.000 0.70 7.37 43.53 3.16
89 90 6.420903 CACGAGACAAAGTCTTCAATCTTGTA 59.579 38.462 10.88 0.00 43.53 2.41
90 91 7.116948 CACGAGACAAAGTCTTCAATCTTGTAT 59.883 37.037 10.88 0.00 43.53 2.29
91 92 7.329717 ACGAGACAAAGTCTTCAATCTTGTATC 59.670 37.037 0.70 5.19 43.53 2.24
92 93 7.543868 CGAGACAAAGTCTTCAATCTTGTATCT 59.456 37.037 0.70 0.00 43.53 1.98
93 94 9.213799 GAGACAAAGTCTTCAATCTTGTATCTT 57.786 33.333 0.70 0.00 43.53 2.40
94 95 9.213799 AGACAAAGTCTTCAATCTTGTATCTTC 57.786 33.333 0.00 0.00 40.28 2.87
95 96 8.908786 ACAAAGTCTTCAATCTTGTATCTTCA 57.091 30.769 0.00 0.00 0.00 3.02
96 97 9.512588 ACAAAGTCTTCAATCTTGTATCTTCAT 57.487 29.630 0.00 0.00 0.00 2.57
101 102 9.255304 GTCTTCAATCTTGTATCTTCATAGTCC 57.745 37.037 0.00 0.00 0.00 3.85
102 103 8.981659 TCTTCAATCTTGTATCTTCATAGTCCA 58.018 33.333 0.00 0.00 0.00 4.02
103 104 9.605275 CTTCAATCTTGTATCTTCATAGTCCAA 57.395 33.333 0.00 0.00 0.00 3.53
104 105 8.948631 TCAATCTTGTATCTTCATAGTCCAAC 57.051 34.615 0.00 0.00 0.00 3.77
105 106 8.539544 TCAATCTTGTATCTTCATAGTCCAACA 58.460 33.333 0.00 0.00 0.00 3.33
106 107 8.824781 CAATCTTGTATCTTCATAGTCCAACAG 58.175 37.037 0.00 0.00 0.00 3.16
107 108 7.482169 TCTTGTATCTTCATAGTCCAACAGT 57.518 36.000 0.00 0.00 0.00 3.55
108 109 7.548097 TCTTGTATCTTCATAGTCCAACAGTC 58.452 38.462 0.00 0.00 0.00 3.51
109 110 6.222038 TGTATCTTCATAGTCCAACAGTCC 57.778 41.667 0.00 0.00 0.00 3.85
110 111 3.868757 TCTTCATAGTCCAACAGTCCG 57.131 47.619 0.00 0.00 0.00 4.79
111 112 2.496070 TCTTCATAGTCCAACAGTCCGG 59.504 50.000 0.00 0.00 0.00 5.14
112 113 1.933021 TCATAGTCCAACAGTCCGGT 58.067 50.000 0.00 0.00 0.00 5.28
113 114 1.822990 TCATAGTCCAACAGTCCGGTC 59.177 52.381 0.00 0.00 0.00 4.79
114 115 1.548719 CATAGTCCAACAGTCCGGTCA 59.451 52.381 0.00 0.00 0.00 4.02
115 116 1.707106 TAGTCCAACAGTCCGGTCAA 58.293 50.000 0.00 0.00 0.00 3.18
116 117 0.834612 AGTCCAACAGTCCGGTCAAA 59.165 50.000 0.00 0.00 0.00 2.69
117 118 1.202651 AGTCCAACAGTCCGGTCAAAG 60.203 52.381 0.00 0.00 0.00 2.77
118 119 0.107831 TCCAACAGTCCGGTCAAAGG 59.892 55.000 0.00 0.00 0.00 3.11
119 120 0.107831 CCAACAGTCCGGTCAAAGGA 59.892 55.000 0.00 0.00 34.99 3.36
120 121 1.271379 CCAACAGTCCGGTCAAAGGAT 60.271 52.381 0.00 0.00 40.30 3.24
121 122 2.027561 CCAACAGTCCGGTCAAAGGATA 60.028 50.000 0.00 0.00 40.30 2.59
122 123 3.370527 CCAACAGTCCGGTCAAAGGATAT 60.371 47.826 0.00 0.00 40.30 1.63
123 124 4.141801 CCAACAGTCCGGTCAAAGGATATA 60.142 45.833 0.00 0.00 40.30 0.86
124 125 4.939052 ACAGTCCGGTCAAAGGATATAG 57.061 45.455 0.00 0.00 40.30 1.31
125 126 4.287552 ACAGTCCGGTCAAAGGATATAGT 58.712 43.478 0.00 0.00 40.30 2.12
126 127 4.341520 ACAGTCCGGTCAAAGGATATAGTC 59.658 45.833 0.00 0.00 40.30 2.59
136 137 2.349297 GGATATAGTCCGGCTGTTCG 57.651 55.000 0.00 0.00 37.23 3.95
144 145 4.452733 CGGCTGTTCGGAGACCCC 62.453 72.222 0.00 0.00 34.32 4.95
145 146 4.097361 GGCTGTTCGGAGACCCCC 62.097 72.222 0.00 0.00 34.32 5.40
146 147 3.003763 GCTGTTCGGAGACCCCCT 61.004 66.667 0.00 0.00 34.32 4.79
147 148 1.684734 GCTGTTCGGAGACCCCCTA 60.685 63.158 0.00 0.00 34.32 3.53
148 149 1.262640 GCTGTTCGGAGACCCCCTAA 61.263 60.000 0.00 0.00 34.32 2.69
149 150 1.497161 CTGTTCGGAGACCCCCTAAT 58.503 55.000 0.00 0.00 34.32 1.73
150 151 1.413077 CTGTTCGGAGACCCCCTAATC 59.587 57.143 0.00 0.00 34.32 1.75
151 152 0.757512 GTTCGGAGACCCCCTAATCC 59.242 60.000 0.00 0.00 34.32 3.01
152 153 0.340558 TTCGGAGACCCCCTAATCCA 59.659 55.000 0.00 0.00 34.32 3.41
153 154 0.105658 TCGGAGACCCCCTAATCCAG 60.106 60.000 0.00 0.00 0.00 3.86
154 155 1.122019 CGGAGACCCCCTAATCCAGG 61.122 65.000 0.00 0.00 45.07 4.45
165 166 3.828875 CTAATCCAGGACTCCCTCAAC 57.171 52.381 0.00 0.00 42.02 3.18
166 167 0.905357 AATCCAGGACTCCCTCAACG 59.095 55.000 0.00 0.00 42.02 4.10
167 168 0.041238 ATCCAGGACTCCCTCAACGA 59.959 55.000 0.00 0.00 42.02 3.85
168 169 0.898789 TCCAGGACTCCCTCAACGAC 60.899 60.000 0.00 0.00 42.02 4.34
169 170 0.900647 CCAGGACTCCCTCAACGACT 60.901 60.000 0.00 0.00 42.02 4.18
170 171 0.244994 CAGGACTCCCTCAACGACTG 59.755 60.000 0.00 0.00 42.02 3.51
171 172 1.079750 GGACTCCCTCAACGACTGC 60.080 63.158 0.00 0.00 0.00 4.40
172 173 1.444553 GACTCCCTCAACGACTGCG 60.445 63.158 0.00 0.00 44.79 5.18
173 174 2.125912 CTCCCTCAACGACTGCGG 60.126 66.667 0.00 0.00 43.17 5.69
174 175 4.373116 TCCCTCAACGACTGCGGC 62.373 66.667 0.00 0.00 43.17 6.53
198 201 0.464554 GGATGCTGGTCCTTAGGCAC 60.465 60.000 0.00 0.00 37.52 5.01
212 215 2.658707 GGCACGTGCACGAAGACTC 61.659 63.158 42.94 22.80 44.36 3.36
213 216 2.658707 GCACGTGCACGAAGACTCC 61.659 63.158 42.94 18.33 43.02 3.85
214 217 1.007271 CACGTGCACGAAGACTCCT 60.007 57.895 42.94 17.58 43.02 3.69
218 221 2.507324 GCACGAAGACTCCTCGGC 60.507 66.667 2.23 0.00 0.00 5.54
232 235 0.803768 CTCGGCTGTCATCGACAAGG 60.804 60.000 0.00 0.00 42.26 3.61
233 236 1.079819 CGGCTGTCATCGACAAGGT 60.080 57.895 0.00 0.00 42.26 3.50
238 241 0.037326 TGTCATCGACAAGGTCAGGC 60.037 55.000 0.00 0.00 39.78 4.85
241 244 3.019003 ATCGACAAGGTCAGGCCGG 62.019 63.158 0.00 0.00 43.70 6.13
242 245 4.760047 CGACAAGGTCAGGCCGGG 62.760 72.222 2.18 0.00 43.70 5.73
245 248 4.410400 CAAGGTCAGGCCGGGTCC 62.410 72.222 2.18 6.49 43.70 4.46
264 267 2.012937 CGGTATGGGAGCGTTAACAA 57.987 50.000 6.39 0.00 44.09 2.83
274 277 4.784128 GTTAACAACGGCGTGTCG 57.216 55.556 15.70 8.18 0.00 4.35
275 278 2.215295 GTTAACAACGGCGTGTCGA 58.785 52.632 15.70 3.39 0.00 4.20
305 309 2.314647 CGGTGGCAATGTCGTTCGT 61.315 57.895 0.00 0.00 0.00 3.85
315 319 0.601576 TGTCGTTCGTTGGTCCATGG 60.602 55.000 4.97 4.97 0.00 3.66
333 337 7.054124 GTCCATGGACCTTGATGTAATCTTTA 58.946 38.462 31.37 0.00 40.63 1.85
334 338 7.721399 GTCCATGGACCTTGATGTAATCTTTAT 59.279 37.037 31.37 0.00 40.63 1.40
335 339 8.281531 TCCATGGACCTTGATGTAATCTTTATT 58.718 33.333 11.44 0.00 45.81 1.40
336 340 9.573166 CCATGGACCTTGATGTAATCTTTATTA 57.427 33.333 5.56 0.00 45.81 0.98
417 425 3.398318 AAAAGGACTGGGGACAAAACT 57.602 42.857 0.00 0.00 42.06 2.66
423 431 3.756963 GGACTGGGGACAAAACTTCATAC 59.243 47.826 0.00 0.00 42.06 2.39
424 432 3.408634 ACTGGGGACAAAACTTCATACG 58.591 45.455 0.00 0.00 42.06 3.06
425 433 3.071892 ACTGGGGACAAAACTTCATACGA 59.928 43.478 0.00 0.00 42.06 3.43
449 457 7.704899 CGATTACAAGGGAAATGAAATAAACCC 59.295 37.037 0.00 0.00 34.65 4.11
450 458 7.857404 TTACAAGGGAAATGAAATAAACCCA 57.143 32.000 0.00 0.00 36.14 4.51
451 459 6.109156 ACAAGGGAAATGAAATAAACCCAC 57.891 37.500 0.00 0.00 36.14 4.61
452 460 5.604650 ACAAGGGAAATGAAATAAACCCACA 59.395 36.000 0.00 0.00 36.14 4.17
453 461 6.272090 ACAAGGGAAATGAAATAAACCCACAT 59.728 34.615 0.00 0.00 36.14 3.21
539 547 1.278127 AGAAATTCGAAGGAAGGCGGA 59.722 47.619 3.35 0.00 35.19 5.54
588 596 0.458543 ACGAATCACAGCGCGAGATT 60.459 50.000 19.79 19.79 37.59 2.40
693 2269 5.415701 TGTTGAAACCCATCTCATTCTAAGC 59.584 40.000 0.00 0.00 0.00 3.09
697 2273 3.034635 ACCCATCTCATTCTAAGCTCGT 58.965 45.455 0.00 0.00 0.00 4.18
748 3504 8.801882 TCGTCTTTCCCATTAGTTGAAATTAT 57.198 30.769 0.00 0.00 0.00 1.28
865 3631 2.345641 CGAGTCCATAGCTTGTTTCACG 59.654 50.000 0.00 0.00 0.00 4.35
973 3739 1.563435 CTCCTGACACTGCAACAGCG 61.563 60.000 0.00 0.00 34.37 5.18
998 3772 2.706190 ACCTGAGCTCAACTGTTACCTT 59.294 45.455 18.85 0.00 0.00 3.50
1009 3783 5.306937 TCAACTGTTACCTTGATGGAGAAGA 59.693 40.000 0.00 0.00 39.71 2.87
1072 3861 4.193334 CGCCGGATCTGTCGCTGA 62.193 66.667 5.05 0.00 0.00 4.26
1269 4067 0.320374 TCTGCGACCCCTACAACAAG 59.680 55.000 0.00 0.00 0.00 3.16
1520 4327 3.003173 CTGGTCAAGGGCCTCCGA 61.003 66.667 6.46 3.54 38.33 4.55
1521 4328 2.285368 TGGTCAAGGGCCTCCGAT 60.285 61.111 6.46 0.00 38.33 4.18
1621 4436 9.541143 TTTCATTTTGAGACAATACCTTTTTCC 57.459 29.630 0.00 0.00 0.00 3.13
1633 4448 1.135689 CCTTTTTCCCAATCGTCGCAG 60.136 52.381 0.00 0.00 0.00 5.18
1642 4457 2.227968 AATCGTCGCAGCGCAAGTTC 62.228 55.000 10.87 0.00 41.68 3.01
1643 4458 3.406361 CGTCGCAGCGCAAGTTCT 61.406 61.111 10.87 0.00 41.68 3.01
1652 4467 1.993370 AGCGCAAGTTCTTGTATCGAC 59.007 47.619 11.47 6.12 41.68 4.20
1734 4549 9.798994 GGTTTAGACTCAGATTTCTTACGAATA 57.201 33.333 0.00 0.00 0.00 1.75
1822 4643 2.103263 CTGCTTAGTAATCCGAGGCCTT 59.897 50.000 6.77 0.00 0.00 4.35
1925 4746 0.109153 CATGGGTATGCCTGCAGCTA 59.891 55.000 8.66 0.00 44.23 3.32
1997 4818 6.285990 TGTCTTTAGGTTGTCTTTCTGTACC 58.714 40.000 0.00 0.00 0.00 3.34
2078 4901 4.986034 TCGTAATGAACTATGTTATGGCGG 59.014 41.667 0.00 0.00 0.00 6.13
2096 4919 3.367910 GGCGGCTTGTTAATGGAAATCAA 60.368 43.478 0.00 0.00 0.00 2.57
2103 4926 3.437395 TGTTAATGGAAATCAACGGGTCG 59.563 43.478 0.00 0.00 0.00 4.79
2136 4959 7.172342 ACTAATTTTGCCAGTGAACTATGGTA 58.828 34.615 0.00 0.00 38.91 3.25
2191 5014 4.640201 ACAAGCAAACTCTCTGTTGCTTAA 59.360 37.500 19.79 0.00 43.78 1.85
2233 5062 4.415881 TGTTTCAGCAAGTGAGAGGTTA 57.584 40.909 0.00 0.00 36.21 2.85
2239 5068 2.639839 AGCAAGTGAGAGGTTACCACAT 59.360 45.455 3.51 0.00 33.53 3.21
2240 5069 2.744202 GCAAGTGAGAGGTTACCACATG 59.256 50.000 3.51 0.00 34.01 3.21
2241 5070 2.744202 CAAGTGAGAGGTTACCACATGC 59.256 50.000 3.51 0.00 33.53 4.06
2242 5071 1.066858 AGTGAGAGGTTACCACATGCG 60.067 52.381 3.51 0.00 33.53 4.73
2243 5072 0.973632 TGAGAGGTTACCACATGCGT 59.026 50.000 3.51 0.00 0.00 5.24
2244 5073 1.067142 TGAGAGGTTACCACATGCGTC 60.067 52.381 3.51 0.00 0.00 5.19
2245 5074 0.973632 AGAGGTTACCACATGCGTCA 59.026 50.000 3.51 0.00 0.00 4.35
2266 5095 1.893808 CGTGACAAGCTGGCCAGTT 60.894 57.895 32.81 25.91 0.00 3.16
2319 5148 5.706833 TGATTCCACGAGTGTACTACAGTAA 59.293 40.000 2.36 0.00 30.64 2.24
2325 5157 8.206867 TCCACGAGTGTACTACAGTAATAGTAT 58.793 37.037 2.36 0.00 39.31 2.12
2409 5241 2.375766 GCCGACGACAAGAGCACTG 61.376 63.158 0.00 0.00 0.00 3.66
2427 5259 2.107953 GATGCTCTCCCTGTCGCC 59.892 66.667 0.00 0.00 0.00 5.54
2428 5260 3.453070 GATGCTCTCCCTGTCGCCC 62.453 68.421 0.00 0.00 0.00 6.13
2429 5261 3.991924 ATGCTCTCCCTGTCGCCCT 62.992 63.158 0.00 0.00 0.00 5.19
2430 5262 3.844090 GCTCTCCCTGTCGCCCTC 61.844 72.222 0.00 0.00 0.00 4.30
2431 5263 3.522731 CTCTCCCTGTCGCCCTCG 61.523 72.222 0.00 0.00 0.00 4.63
2436 5268 4.069232 CCTGTCGCCCTCGCTGAA 62.069 66.667 0.00 0.00 35.26 3.02
2437 5269 2.507992 CTGTCGCCCTCGCTGAAG 60.508 66.667 0.00 0.00 35.26 3.02
2438 5270 3.288308 CTGTCGCCCTCGCTGAAGT 62.288 63.158 0.00 0.00 35.26 3.01
2439 5271 1.934220 CTGTCGCCCTCGCTGAAGTA 61.934 60.000 0.00 0.00 35.26 2.24
2440 5272 1.516603 GTCGCCCTCGCTGAAGTAC 60.517 63.158 0.00 0.00 35.26 2.73
2441 5273 1.677966 TCGCCCTCGCTGAAGTACT 60.678 57.895 0.00 0.00 35.26 2.73
2442 5274 0.393402 TCGCCCTCGCTGAAGTACTA 60.393 55.000 0.00 0.00 35.26 1.82
2443 5275 0.669077 CGCCCTCGCTGAAGTACTAT 59.331 55.000 0.00 0.00 0.00 2.12
2444 5276 1.878088 CGCCCTCGCTGAAGTACTATA 59.122 52.381 0.00 0.00 0.00 1.31
2445 5277 2.095668 CGCCCTCGCTGAAGTACTATAG 60.096 54.545 0.00 0.00 0.00 1.31
2446 5278 2.351932 GCCCTCGCTGAAGTACTATAGC 60.352 54.545 17.10 17.10 0.00 2.97
2447 5279 3.150767 CCCTCGCTGAAGTACTATAGCT 58.849 50.000 21.82 0.00 34.13 3.32
2448 5280 3.570550 CCCTCGCTGAAGTACTATAGCTT 59.429 47.826 21.82 0.00 34.13 3.74
2449 5281 4.760715 CCCTCGCTGAAGTACTATAGCTTA 59.239 45.833 21.82 12.89 34.13 3.09
2450 5282 5.106475 CCCTCGCTGAAGTACTATAGCTTAG 60.106 48.000 21.82 18.57 34.13 2.18
2451 5283 5.106475 CCTCGCTGAAGTACTATAGCTTAGG 60.106 48.000 21.82 21.74 33.58 2.69
2452 5284 5.618236 TCGCTGAAGTACTATAGCTTAGGA 58.382 41.667 21.82 12.86 34.13 2.94
2453 5285 5.469421 TCGCTGAAGTACTATAGCTTAGGAC 59.531 44.000 21.82 0.51 34.13 3.85
2454 5286 5.470777 CGCTGAAGTACTATAGCTTAGGACT 59.529 44.000 21.82 12.46 40.29 3.85
2455 5287 6.566942 CGCTGAAGTACTATAGCTTAGGACTG 60.567 46.154 21.82 9.21 37.73 3.51
2456 5288 6.487331 GCTGAAGTACTATAGCTTAGGACTGA 59.513 42.308 18.89 9.26 37.73 3.41
2457 5289 7.175990 GCTGAAGTACTATAGCTTAGGACTGAT 59.824 40.741 18.89 6.80 37.73 2.90
2458 5290 8.998277 TGAAGTACTATAGCTTAGGACTGATT 57.002 34.615 16.71 6.28 37.73 2.57
2459 5291 8.851145 TGAAGTACTATAGCTTAGGACTGATTG 58.149 37.037 16.71 0.00 37.73 2.67
2460 5292 8.770010 AAGTACTATAGCTTAGGACTGATTGT 57.230 34.615 16.71 2.55 37.73 2.71
2461 5293 8.770010 AGTACTATAGCTTAGGACTGATTGTT 57.230 34.615 15.77 0.00 37.34 2.83
2462 5294 8.634444 AGTACTATAGCTTAGGACTGATTGTTG 58.366 37.037 15.77 0.00 37.34 3.33
2463 5295 7.661536 ACTATAGCTTAGGACTGATTGTTGA 57.338 36.000 0.00 0.00 0.00 3.18
2464 5296 8.256356 ACTATAGCTTAGGACTGATTGTTGAT 57.744 34.615 0.00 0.00 0.00 2.57
2465 5297 8.709308 ACTATAGCTTAGGACTGATTGTTGATT 58.291 33.333 0.00 0.00 0.00 2.57
2466 5298 7.798596 ATAGCTTAGGACTGATTGTTGATTG 57.201 36.000 0.00 0.00 0.00 2.67
2467 5299 4.946157 AGCTTAGGACTGATTGTTGATTGG 59.054 41.667 0.00 0.00 0.00 3.16
2468 5300 4.702131 GCTTAGGACTGATTGTTGATTGGT 59.298 41.667 0.00 0.00 0.00 3.67
2469 5301 5.183904 GCTTAGGACTGATTGTTGATTGGTT 59.816 40.000 0.00 0.00 0.00 3.67
2470 5302 6.294731 GCTTAGGACTGATTGTTGATTGGTTT 60.295 38.462 0.00 0.00 0.00 3.27
2471 5303 7.595819 TTAGGACTGATTGTTGATTGGTTTT 57.404 32.000 0.00 0.00 0.00 2.43
2472 5304 6.089249 AGGACTGATTGTTGATTGGTTTTC 57.911 37.500 0.00 0.00 0.00 2.29
2473 5305 5.598005 AGGACTGATTGTTGATTGGTTTTCA 59.402 36.000 0.00 0.00 0.00 2.69
2474 5306 5.922544 GGACTGATTGTTGATTGGTTTTCAG 59.077 40.000 0.00 0.00 36.35 3.02
2475 5307 6.239008 GGACTGATTGTTGATTGGTTTTCAGA 60.239 38.462 0.00 0.00 34.78 3.27
2476 5308 7.294017 ACTGATTGTTGATTGGTTTTCAGAT 57.706 32.000 0.00 0.00 34.78 2.90
2477 5309 8.408043 ACTGATTGTTGATTGGTTTTCAGATA 57.592 30.769 0.00 0.00 34.78 1.98
2478 5310 8.517878 ACTGATTGTTGATTGGTTTTCAGATAG 58.482 33.333 0.00 0.00 34.78 2.08
2479 5311 7.315142 TGATTGTTGATTGGTTTTCAGATAGC 58.685 34.615 0.00 0.00 0.00 2.97
2480 5312 6.899393 TTGTTGATTGGTTTTCAGATAGCT 57.101 33.333 0.00 0.00 0.00 3.32
2481 5313 6.899393 TGTTGATTGGTTTTCAGATAGCTT 57.101 33.333 0.00 0.00 0.00 3.74
2482 5314 7.994425 TGTTGATTGGTTTTCAGATAGCTTA 57.006 32.000 0.00 0.00 0.00 3.09
2483 5315 7.816640 TGTTGATTGGTTTTCAGATAGCTTAC 58.183 34.615 0.00 0.00 0.00 2.34
2484 5316 7.094377 TGTTGATTGGTTTTCAGATAGCTTACC 60.094 37.037 0.00 0.00 0.00 2.85
2485 5317 5.584649 TGATTGGTTTTCAGATAGCTTACCG 59.415 40.000 0.00 0.00 0.00 4.02
2486 5318 3.267483 TGGTTTTCAGATAGCTTACCGC 58.733 45.455 0.00 0.00 39.57 5.68
2487 5319 2.612672 GGTTTTCAGATAGCTTACCGCC 59.387 50.000 0.00 0.00 40.39 6.13
2488 5320 2.218953 TTTCAGATAGCTTACCGCCG 57.781 50.000 0.00 0.00 40.39 6.46
2489 5321 1.108776 TTCAGATAGCTTACCGCCGT 58.891 50.000 0.00 0.00 40.39 5.68
2490 5322 1.108776 TCAGATAGCTTACCGCCGTT 58.891 50.000 0.00 0.00 40.39 4.44
2491 5323 1.479323 TCAGATAGCTTACCGCCGTTT 59.521 47.619 0.00 0.00 40.39 3.60
2492 5324 1.593006 CAGATAGCTTACCGCCGTTTG 59.407 52.381 0.00 0.00 40.39 2.93
2493 5325 0.935196 GATAGCTTACCGCCGTTTGG 59.065 55.000 0.00 0.00 40.39 3.28
2494 5326 0.538118 ATAGCTTACCGCCGTTTGGA 59.462 50.000 0.00 0.00 40.39 3.53
2495 5327 0.538118 TAGCTTACCGCCGTTTGGAT 59.462 50.000 0.00 0.00 40.39 3.41
2496 5328 0.538118 AGCTTACCGCCGTTTGGATA 59.462 50.000 0.00 0.00 40.39 2.59
2497 5329 1.065998 AGCTTACCGCCGTTTGGATAA 60.066 47.619 0.00 0.00 40.39 1.75
2498 5330 1.944709 GCTTACCGCCGTTTGGATAAT 59.055 47.619 0.00 0.00 37.49 1.28
2499 5331 2.032290 GCTTACCGCCGTTTGGATAATC 60.032 50.000 0.00 0.00 37.49 1.75
2500 5332 2.983907 TACCGCCGTTTGGATAATCA 57.016 45.000 0.00 0.00 37.49 2.57
2501 5333 1.663695 ACCGCCGTTTGGATAATCAG 58.336 50.000 0.00 0.00 37.49 2.90
2502 5334 1.208535 ACCGCCGTTTGGATAATCAGA 59.791 47.619 0.00 0.00 37.49 3.27
2503 5335 2.158813 ACCGCCGTTTGGATAATCAGAT 60.159 45.455 0.00 0.00 37.49 2.90
2504 5336 2.224079 CCGCCGTTTGGATAATCAGATG 59.776 50.000 0.00 0.00 37.49 2.90
2505 5337 3.130633 CGCCGTTTGGATAATCAGATGA 58.869 45.455 0.00 0.00 37.49 2.92
2506 5338 3.748048 CGCCGTTTGGATAATCAGATGAT 59.252 43.478 0.00 0.00 37.49 2.45
2507 5339 4.377738 CGCCGTTTGGATAATCAGATGATG 60.378 45.833 0.00 0.00 37.49 3.07
2508 5340 4.614535 GCCGTTTGGATAATCAGATGATGC 60.615 45.833 0.00 0.00 37.49 3.91
2509 5341 4.083110 CCGTTTGGATAATCAGATGATGCC 60.083 45.833 0.00 0.17 37.49 4.40
2510 5342 4.083110 CGTTTGGATAATCAGATGATGCCC 60.083 45.833 0.00 0.00 34.49 5.36
2511 5343 3.339253 TGGATAATCAGATGATGCCCG 57.661 47.619 0.00 0.00 34.49 6.13
2512 5344 2.012673 GGATAATCAGATGATGCCCGC 58.987 52.381 0.00 0.00 34.49 6.13
2513 5345 2.616256 GGATAATCAGATGATGCCCGCA 60.616 50.000 0.00 0.00 34.49 5.69
2514 5346 2.636647 TAATCAGATGATGCCCGCAA 57.363 45.000 0.00 0.00 34.49 4.85
2515 5347 1.991121 AATCAGATGATGCCCGCAAT 58.009 45.000 0.00 0.00 34.49 3.56
2516 5348 1.244816 ATCAGATGATGCCCGCAATG 58.755 50.000 0.00 0.00 32.68 2.82
2517 5349 0.107066 TCAGATGATGCCCGCAATGT 60.107 50.000 0.00 0.00 0.00 2.71
2518 5350 0.742505 CAGATGATGCCCGCAATGTT 59.257 50.000 0.00 0.00 0.00 2.71
2519 5351 0.742505 AGATGATGCCCGCAATGTTG 59.257 50.000 0.00 0.00 0.00 3.33
2520 5352 0.457035 GATGATGCCCGCAATGTTGT 59.543 50.000 0.00 0.00 0.00 3.32
2521 5353 0.896923 ATGATGCCCGCAATGTTGTT 59.103 45.000 0.00 0.00 0.00 2.83
2522 5354 0.038435 TGATGCCCGCAATGTTGTTG 60.038 50.000 0.00 0.00 0.00 3.33
2523 5355 1.353609 GATGCCCGCAATGTTGTTGC 61.354 55.000 2.81 2.81 41.71 4.17
2529 5361 3.512978 GCAATGTTGTTGCGGGAAT 57.487 47.368 0.00 0.00 35.58 3.01
2530 5362 2.645730 GCAATGTTGTTGCGGGAATA 57.354 45.000 0.00 0.00 35.58 1.75
2531 5363 3.163630 GCAATGTTGTTGCGGGAATAT 57.836 42.857 0.00 0.00 35.58 1.28
2532 5364 3.520569 GCAATGTTGTTGCGGGAATATT 58.479 40.909 0.00 0.00 35.58 1.28
2533 5365 3.932089 GCAATGTTGTTGCGGGAATATTT 59.068 39.130 0.00 0.00 35.58 1.40
2534 5366 4.391523 GCAATGTTGTTGCGGGAATATTTT 59.608 37.500 0.00 0.00 35.58 1.82
2535 5367 5.670835 GCAATGTTGTTGCGGGAATATTTTG 60.671 40.000 0.00 0.00 35.58 2.44
2536 5368 4.592485 TGTTGTTGCGGGAATATTTTGT 57.408 36.364 0.00 0.00 0.00 2.83
2537 5369 5.707242 TGTTGTTGCGGGAATATTTTGTA 57.293 34.783 0.00 0.00 0.00 2.41
2538 5370 6.085555 TGTTGTTGCGGGAATATTTTGTAA 57.914 33.333 0.00 0.00 0.00 2.41
2539 5371 6.692486 TGTTGTTGCGGGAATATTTTGTAAT 58.308 32.000 0.00 0.00 0.00 1.89
2540 5372 7.827701 TGTTGTTGCGGGAATATTTTGTAATA 58.172 30.769 0.00 0.00 0.00 0.98
2541 5373 7.755822 TGTTGTTGCGGGAATATTTTGTAATAC 59.244 33.333 0.00 0.00 0.00 1.89
2542 5374 7.633193 TGTTGCGGGAATATTTTGTAATACT 57.367 32.000 0.00 0.00 0.00 2.12
2543 5375 8.734218 TGTTGCGGGAATATTTTGTAATACTA 57.266 30.769 0.00 0.00 0.00 1.82
2544 5376 8.832521 TGTTGCGGGAATATTTTGTAATACTAG 58.167 33.333 0.00 0.00 0.00 2.57
2545 5377 8.833493 GTTGCGGGAATATTTTGTAATACTAGT 58.167 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.530701 ACGGACATGGATATCTCCTCC 58.469 52.381 2.05 1.62 42.59 4.30
2 3 4.082845 CAGTACGGACATGGATATCTCCT 58.917 47.826 0.00 0.00 42.59 3.69
3 4 3.367498 GCAGTACGGACATGGATATCTCC 60.367 52.174 0.00 0.69 42.45 3.71
4 5 3.367498 GGCAGTACGGACATGGATATCTC 60.367 52.174 0.00 0.00 0.00 2.75
5 6 2.563179 GGCAGTACGGACATGGATATCT 59.437 50.000 0.00 0.00 0.00 1.98
6 7 2.563179 AGGCAGTACGGACATGGATATC 59.437 50.000 0.00 0.00 0.00 1.63
7 8 2.609747 AGGCAGTACGGACATGGATAT 58.390 47.619 0.00 0.00 0.00 1.63
8 9 2.082140 AGGCAGTACGGACATGGATA 57.918 50.000 0.00 0.00 0.00 2.59
9 10 1.964223 CTAGGCAGTACGGACATGGAT 59.036 52.381 0.00 0.00 0.00 3.41
10 11 1.399714 CTAGGCAGTACGGACATGGA 58.600 55.000 0.00 0.00 0.00 3.41
11 12 0.249489 GCTAGGCAGTACGGACATGG 60.249 60.000 0.00 0.00 0.00 3.66
12 13 0.747255 AGCTAGGCAGTACGGACATG 59.253 55.000 0.00 0.00 0.00 3.21
13 14 1.137086 CAAGCTAGGCAGTACGGACAT 59.863 52.381 0.00 0.00 0.00 3.06
14 15 0.530744 CAAGCTAGGCAGTACGGACA 59.469 55.000 0.00 0.00 0.00 4.02
15 16 0.806492 GCAAGCTAGGCAGTACGGAC 60.806 60.000 5.48 0.00 0.00 4.79
16 17 1.515954 GCAAGCTAGGCAGTACGGA 59.484 57.895 5.48 0.00 0.00 4.69
17 18 1.521681 GGCAAGCTAGGCAGTACGG 60.522 63.158 11.85 0.00 0.00 4.02
18 19 0.108138 AAGGCAAGCTAGGCAGTACG 60.108 55.000 11.85 0.00 36.37 3.67
19 20 1.657822 GAAGGCAAGCTAGGCAGTAC 58.342 55.000 11.85 0.00 36.37 2.73
20 21 0.541863 GGAAGGCAAGCTAGGCAGTA 59.458 55.000 11.85 0.00 36.37 2.74
21 22 1.301293 GGAAGGCAAGCTAGGCAGT 59.699 57.895 11.85 0.00 36.37 4.40
22 23 1.028868 GTGGAAGGCAAGCTAGGCAG 61.029 60.000 11.85 0.00 36.37 4.85
23 24 1.002134 GTGGAAGGCAAGCTAGGCA 60.002 57.895 11.85 0.00 36.37 4.75
24 25 2.109126 CGTGGAAGGCAAGCTAGGC 61.109 63.158 1.78 1.78 0.00 3.93
25 26 4.208632 CGTGGAAGGCAAGCTAGG 57.791 61.111 0.00 0.00 0.00 3.02
34 35 0.608640 ACTCTACTTGGCGTGGAAGG 59.391 55.000 0.00 0.00 32.33 3.46
35 36 1.404315 GGACTCTACTTGGCGTGGAAG 60.404 57.143 0.00 0.00 32.33 3.46
36 37 0.606604 GGACTCTACTTGGCGTGGAA 59.393 55.000 0.00 0.00 32.33 3.53
37 38 1.255667 GGGACTCTACTTGGCGTGGA 61.256 60.000 0.00 0.00 0.00 4.02
38 39 1.218316 GGGACTCTACTTGGCGTGG 59.782 63.158 0.00 0.00 0.00 4.94
39 40 0.537188 ATGGGACTCTACTTGGCGTG 59.463 55.000 0.00 0.00 0.00 5.34
40 41 0.824759 GATGGGACTCTACTTGGCGT 59.175 55.000 0.00 0.00 0.00 5.68
41 42 0.105039 GGATGGGACTCTACTTGGCG 59.895 60.000 0.00 0.00 0.00 5.69
42 43 0.105039 CGGATGGGACTCTACTTGGC 59.895 60.000 0.00 0.00 0.00 4.52
43 44 0.753262 CCGGATGGGACTCTACTTGG 59.247 60.000 0.00 0.00 38.47 3.61
44 45 1.776662 TCCGGATGGGACTCTACTTG 58.223 55.000 0.00 0.00 40.94 3.16
53 54 2.050350 GTCTCGTGTCCGGATGGGA 61.050 63.158 7.81 3.17 44.68 4.37
54 55 1.884075 TTGTCTCGTGTCCGGATGGG 61.884 60.000 7.81 0.18 35.24 4.00
55 56 0.037697 TTTGTCTCGTGTCCGGATGG 60.038 55.000 7.81 0.00 33.95 3.51
56 57 1.336887 ACTTTGTCTCGTGTCCGGATG 60.337 52.381 7.81 0.31 33.95 3.51
57 58 0.966920 ACTTTGTCTCGTGTCCGGAT 59.033 50.000 7.81 0.00 33.95 4.18
58 59 0.313043 GACTTTGTCTCGTGTCCGGA 59.687 55.000 0.00 0.00 33.95 5.14
59 60 0.314302 AGACTTTGTCTCGTGTCCGG 59.686 55.000 0.00 0.00 38.71 5.14
60 61 2.052157 GAAGACTTTGTCTCGTGTCCG 58.948 52.381 0.42 0.00 42.59 4.79
61 62 3.093717 TGAAGACTTTGTCTCGTGTCC 57.906 47.619 0.42 0.00 42.59 4.02
62 63 4.985409 AGATTGAAGACTTTGTCTCGTGTC 59.015 41.667 0.42 0.00 42.59 3.67
63 64 4.950050 AGATTGAAGACTTTGTCTCGTGT 58.050 39.130 0.42 0.00 42.59 4.49
64 65 5.235186 ACAAGATTGAAGACTTTGTCTCGTG 59.765 40.000 0.00 0.77 42.59 4.35
65 66 5.360591 ACAAGATTGAAGACTTTGTCTCGT 58.639 37.500 0.00 0.00 42.59 4.18
66 67 5.914085 ACAAGATTGAAGACTTTGTCTCG 57.086 39.130 0.00 0.00 42.59 4.04
67 68 8.770438 AGATACAAGATTGAAGACTTTGTCTC 57.230 34.615 0.00 0.00 42.59 3.36
68 69 9.213799 GAAGATACAAGATTGAAGACTTTGTCT 57.786 33.333 0.00 0.00 45.64 3.41
69 70 8.993121 TGAAGATACAAGATTGAAGACTTTGTC 58.007 33.333 0.00 0.00 0.00 3.18
70 71 8.908786 TGAAGATACAAGATTGAAGACTTTGT 57.091 30.769 0.00 0.00 0.00 2.83
75 76 9.255304 GGACTATGAAGATACAAGATTGAAGAC 57.745 37.037 0.00 0.00 0.00 3.01
76 77 8.981659 TGGACTATGAAGATACAAGATTGAAGA 58.018 33.333 0.00 0.00 0.00 2.87
77 78 9.605275 TTGGACTATGAAGATACAAGATTGAAG 57.395 33.333 0.00 0.00 0.00 3.02
78 79 9.383519 GTTGGACTATGAAGATACAAGATTGAA 57.616 33.333 0.00 0.00 0.00 2.69
79 80 8.539544 TGTTGGACTATGAAGATACAAGATTGA 58.460 33.333 0.00 0.00 0.00 2.57
80 81 8.722480 TGTTGGACTATGAAGATACAAGATTG 57.278 34.615 0.00 0.00 0.00 2.67
81 82 8.543774 ACTGTTGGACTATGAAGATACAAGATT 58.456 33.333 0.00 0.00 0.00 2.40
82 83 8.083828 ACTGTTGGACTATGAAGATACAAGAT 57.916 34.615 0.00 0.00 0.00 2.40
83 84 7.363880 GGACTGTTGGACTATGAAGATACAAGA 60.364 40.741 0.00 0.00 0.00 3.02
84 85 6.758886 GGACTGTTGGACTATGAAGATACAAG 59.241 42.308 0.00 0.00 0.00 3.16
85 86 6.627287 CGGACTGTTGGACTATGAAGATACAA 60.627 42.308 0.00 0.00 0.00 2.41
86 87 5.163550 CGGACTGTTGGACTATGAAGATACA 60.164 44.000 0.00 0.00 0.00 2.29
87 88 5.282510 CGGACTGTTGGACTATGAAGATAC 58.717 45.833 0.00 0.00 0.00 2.24
88 89 4.341235 CCGGACTGTTGGACTATGAAGATA 59.659 45.833 0.00 0.00 0.00 1.98
89 90 3.133003 CCGGACTGTTGGACTATGAAGAT 59.867 47.826 0.00 0.00 0.00 2.40
90 91 2.496070 CCGGACTGTTGGACTATGAAGA 59.504 50.000 0.00 0.00 0.00 2.87
91 92 2.233922 ACCGGACTGTTGGACTATGAAG 59.766 50.000 9.46 0.00 0.00 3.02
92 93 2.232941 GACCGGACTGTTGGACTATGAA 59.767 50.000 9.46 0.00 0.00 2.57
93 94 1.822990 GACCGGACTGTTGGACTATGA 59.177 52.381 9.46 0.00 0.00 2.15
94 95 1.548719 TGACCGGACTGTTGGACTATG 59.451 52.381 9.46 0.00 0.00 2.23
95 96 1.933021 TGACCGGACTGTTGGACTAT 58.067 50.000 9.46 0.00 0.00 2.12
96 97 1.707106 TTGACCGGACTGTTGGACTA 58.293 50.000 9.46 0.00 0.00 2.59
97 98 0.834612 TTTGACCGGACTGTTGGACT 59.165 50.000 9.46 0.00 0.00 3.85
98 99 1.226746 CTTTGACCGGACTGTTGGAC 58.773 55.000 9.46 2.09 0.00 4.02
99 100 0.107831 CCTTTGACCGGACTGTTGGA 59.892 55.000 9.46 0.00 0.00 3.53
100 101 0.107831 TCCTTTGACCGGACTGTTGG 59.892 55.000 9.46 3.95 0.00 3.77
101 102 2.185004 ATCCTTTGACCGGACTGTTG 57.815 50.000 9.46 0.00 32.41 3.33
102 103 4.715297 ACTATATCCTTTGACCGGACTGTT 59.285 41.667 9.46 0.00 32.41 3.16
103 104 4.287552 ACTATATCCTTTGACCGGACTGT 58.712 43.478 9.46 0.00 32.41 3.55
104 105 4.262079 GGACTATATCCTTTGACCGGACTG 60.262 50.000 9.46 0.00 45.22 3.51
105 106 3.896272 GGACTATATCCTTTGACCGGACT 59.104 47.826 9.46 0.00 45.22 3.85
106 107 3.305199 CGGACTATATCCTTTGACCGGAC 60.305 52.174 9.46 1.07 46.69 4.79
107 108 2.889045 CGGACTATATCCTTTGACCGGA 59.111 50.000 9.46 0.00 46.69 5.14
108 109 2.029290 CCGGACTATATCCTTTGACCGG 60.029 54.545 0.00 0.00 46.69 5.28
109 110 2.609737 GCCGGACTATATCCTTTGACCG 60.610 54.545 5.05 0.00 46.69 4.79
110 111 2.633481 AGCCGGACTATATCCTTTGACC 59.367 50.000 5.05 0.00 46.69 4.02
111 112 3.069729 ACAGCCGGACTATATCCTTTGAC 59.930 47.826 5.05 0.00 46.69 3.18
112 113 3.305720 ACAGCCGGACTATATCCTTTGA 58.694 45.455 5.05 0.00 46.69 2.69
113 114 3.753294 ACAGCCGGACTATATCCTTTG 57.247 47.619 5.05 0.00 46.69 2.77
114 115 3.243771 CGAACAGCCGGACTATATCCTTT 60.244 47.826 5.05 0.00 46.69 3.11
115 116 2.296471 CGAACAGCCGGACTATATCCTT 59.704 50.000 5.05 0.00 46.69 3.36
116 117 1.887198 CGAACAGCCGGACTATATCCT 59.113 52.381 5.05 0.00 46.69 3.24
117 118 2.349297 CGAACAGCCGGACTATATCC 57.651 55.000 5.05 0.00 45.20 2.59
127 128 4.452733 GGGGTCTCCGAACAGCCG 62.453 72.222 0.00 0.00 0.00 5.52
128 129 4.097361 GGGGGTCTCCGAACAGCC 62.097 72.222 0.00 0.00 36.01 4.85
129 130 1.262640 TTAGGGGGTCTCCGAACAGC 61.263 60.000 0.00 0.00 36.01 4.40
130 131 1.413077 GATTAGGGGGTCTCCGAACAG 59.587 57.143 0.00 0.00 36.01 3.16
131 132 1.492764 GATTAGGGGGTCTCCGAACA 58.507 55.000 0.00 0.00 36.01 3.18
132 133 0.757512 GGATTAGGGGGTCTCCGAAC 59.242 60.000 0.00 0.00 36.01 3.95
133 134 0.340558 TGGATTAGGGGGTCTCCGAA 59.659 55.000 0.00 0.00 36.01 4.30
134 135 0.105658 CTGGATTAGGGGGTCTCCGA 60.106 60.000 0.00 0.00 36.01 4.55
135 136 1.122019 CCTGGATTAGGGGGTCTCCG 61.122 65.000 0.00 0.00 43.33 4.63
136 137 2.855669 CCTGGATTAGGGGGTCTCC 58.144 63.158 0.00 0.00 43.33 3.71
144 145 2.436173 GTTGAGGGAGTCCTGGATTAGG 59.564 54.545 9.58 0.00 45.05 2.69
145 146 2.101582 CGTTGAGGGAGTCCTGGATTAG 59.898 54.545 9.58 0.00 45.05 1.73
146 147 2.108168 CGTTGAGGGAGTCCTGGATTA 58.892 52.381 9.58 0.00 45.05 1.75
147 148 0.905357 CGTTGAGGGAGTCCTGGATT 59.095 55.000 9.58 0.00 45.05 3.01
148 149 0.041238 TCGTTGAGGGAGTCCTGGAT 59.959 55.000 9.58 0.00 45.05 3.41
149 150 0.898789 GTCGTTGAGGGAGTCCTGGA 60.899 60.000 9.58 0.00 45.05 3.86
150 151 0.900647 AGTCGTTGAGGGAGTCCTGG 60.901 60.000 9.58 0.00 45.05 4.45
151 152 0.244994 CAGTCGTTGAGGGAGTCCTG 59.755 60.000 9.58 0.00 45.05 3.86
153 154 1.079750 GCAGTCGTTGAGGGAGTCC 60.080 63.158 0.00 0.00 0.00 3.85
154 155 1.444553 CGCAGTCGTTGAGGGAGTC 60.445 63.158 0.00 0.00 0.00 3.36
155 156 2.651361 CGCAGTCGTTGAGGGAGT 59.349 61.111 0.00 0.00 0.00 3.85
156 157 2.125912 CCGCAGTCGTTGAGGGAG 60.126 66.667 4.96 0.00 42.51 4.30
157 158 4.373116 GCCGCAGTCGTTGAGGGA 62.373 66.667 12.47 0.00 45.94 4.20
166 167 4.864334 CATCCTGGGGCCGCAGTC 62.864 72.222 38.62 8.25 0.00 3.51
198 201 1.797933 CGAGGAGTCTTCGTGCACG 60.798 63.158 32.76 32.76 41.45 5.34
212 215 0.803768 CTTGTCGATGACAGCCGAGG 60.804 60.000 3.36 0.00 43.69 4.63
213 216 0.803768 CCTTGTCGATGACAGCCGAG 60.804 60.000 3.36 0.00 43.69 4.63
214 217 1.215382 CCTTGTCGATGACAGCCGA 59.785 57.895 0.00 0.00 43.69 5.54
218 221 2.001812 CCTGACCTTGTCGATGACAG 57.998 55.000 0.00 0.00 43.69 3.51
241 244 1.394266 TAACGCTCCCATACCGGACC 61.394 60.000 9.46 0.00 36.56 4.46
242 245 0.461135 TTAACGCTCCCATACCGGAC 59.539 55.000 9.46 0.00 36.56 4.79
245 248 1.662122 GTTGTTAACGCTCCCATACCG 59.338 52.381 0.26 0.00 0.00 4.02
257 260 0.111574 GTCGACACGCCGTTGTTAAC 60.112 55.000 11.55 0.00 0.00 2.01
258 261 1.538946 CGTCGACACGCCGTTGTTAA 61.539 55.000 17.16 0.00 39.69 2.01
259 262 2.010286 CGTCGACACGCCGTTGTTA 61.010 57.895 17.16 0.00 39.69 2.41
260 263 3.324671 CGTCGACACGCCGTTGTT 61.325 61.111 17.16 0.00 39.69 2.83
268 271 2.372690 CCAGAAAGCCGTCGACACG 61.373 63.158 17.16 5.79 46.29 4.49
269 272 2.668280 GCCAGAAAGCCGTCGACAC 61.668 63.158 17.16 6.93 0.00 3.67
270 273 2.357034 GCCAGAAAGCCGTCGACA 60.357 61.111 17.16 0.00 0.00 4.35
274 277 3.423154 CACCGCCAGAAAGCCGTC 61.423 66.667 0.00 0.00 0.00 4.79
280 283 1.523154 GACATTGCCACCGCCAGAAA 61.523 55.000 0.00 0.00 0.00 2.52
292 295 0.110373 GGACCAACGAACGACATTGC 60.110 55.000 0.14 0.00 0.00 3.56
333 337 8.903820 GGAAGTACAAAGCACCTCAAATATAAT 58.096 33.333 0.00 0.00 0.00 1.28
334 338 7.885922 TGGAAGTACAAAGCACCTCAAATATAA 59.114 33.333 0.00 0.00 0.00 0.98
335 339 7.398829 TGGAAGTACAAAGCACCTCAAATATA 58.601 34.615 0.00 0.00 0.00 0.86
336 340 6.245408 TGGAAGTACAAAGCACCTCAAATAT 58.755 36.000 0.00 0.00 0.00 1.28
337 341 5.626142 TGGAAGTACAAAGCACCTCAAATA 58.374 37.500 0.00 0.00 0.00 1.40
338 342 4.469657 TGGAAGTACAAAGCACCTCAAAT 58.530 39.130 0.00 0.00 0.00 2.32
401 405 2.358322 TGAAGTTTTGTCCCCAGTCC 57.642 50.000 0.00 0.00 0.00 3.85
404 408 3.670625 TCGTATGAAGTTTTGTCCCCAG 58.329 45.455 0.00 0.00 0.00 4.45
405 409 3.773418 TCGTATGAAGTTTTGTCCCCA 57.227 42.857 0.00 0.00 0.00 4.96
406 410 5.644636 TGTAATCGTATGAAGTTTTGTCCCC 59.355 40.000 0.00 0.00 0.00 4.81
408 412 7.241376 CCTTGTAATCGTATGAAGTTTTGTCC 58.759 38.462 0.00 0.00 0.00 4.02
417 425 8.568676 TTTCATTTCCCTTGTAATCGTATGAA 57.431 30.769 0.00 0.00 0.00 2.57
423 431 7.704899 GGGTTTATTTCATTTCCCTTGTAATCG 59.295 37.037 0.00 0.00 32.89 3.34
424 432 8.536175 TGGGTTTATTTCATTTCCCTTGTAATC 58.464 33.333 0.00 0.00 36.23 1.75
425 433 8.318412 GTGGGTTTATTTCATTTCCCTTGTAAT 58.682 33.333 0.00 0.00 36.23 1.89
497 505 0.601576 ACATTTGACAGCGCCGTACA 60.602 50.000 2.29 0.00 0.00 2.90
693 2269 2.355132 ACAAGCTATGGACTCGTACGAG 59.645 50.000 36.93 36.93 46.91 4.18
697 2273 4.794278 TGAAACAAGCTATGGACTCGTA 57.206 40.909 0.00 0.00 0.00 3.43
819 3577 7.148052 CGACCTACTACCTTATAATGAGATGGG 60.148 44.444 0.00 0.00 0.00 4.00
865 3631 3.802866 CTCTACAATGGGAAAGAGGAGC 58.197 50.000 0.00 0.00 33.37 4.70
998 3772 0.526211 CGACGTGGTCTTCTCCATCA 59.474 55.000 0.00 0.00 39.81 3.07
1053 3827 3.893763 AGCGACAGATCCGGCGAG 61.894 66.667 8.77 0.00 0.00 5.03
1054 3828 4.193334 CAGCGACAGATCCGGCGA 62.193 66.667 8.77 0.00 0.00 5.54
1298 4096 3.936566 TCCCGGTGGAAGTCCCCT 61.937 66.667 0.00 0.00 37.86 4.79
1303 4101 3.308705 GGTCGTCCCGGTGGAAGT 61.309 66.667 0.00 0.00 44.07 3.01
1305 4103 3.307906 CAGGTCGTCCCGGTGGAA 61.308 66.667 0.00 0.00 44.07 3.53
1621 4436 3.707156 CTTGCGCTGCGACGATTGG 62.707 63.158 28.07 3.85 34.06 3.16
1633 4448 1.060698 GGTCGATACAAGAACTTGCGC 59.939 52.381 13.50 0.00 44.03 6.09
1636 4451 3.314553 ACACGGTCGATACAAGAACTTG 58.685 45.455 12.22 12.22 45.58 3.16
1642 4457 1.531264 CGAGGACACGGTCGATACAAG 60.531 57.143 0.00 0.00 38.50 3.16
1643 4458 0.448990 CGAGGACACGGTCGATACAA 59.551 55.000 0.00 0.00 38.50 2.41
1652 4467 3.760035 CTCCCCACGAGGACACGG 61.760 72.222 0.00 0.00 38.24 4.94
1734 4549 0.588252 GACACTGCAACAGCATCGTT 59.412 50.000 0.00 0.00 37.69 3.85
1795 4612 3.982475 TCGGATTACTAAGCAGCATCTG 58.018 45.455 0.00 0.00 34.12 2.90
1804 4621 2.807108 GCCAAGGCCTCGGATTACTAAG 60.807 54.545 16.09 0.00 34.56 2.18
1805 4622 1.140252 GCCAAGGCCTCGGATTACTAA 59.860 52.381 16.09 0.00 34.56 2.24
1814 4631 1.463674 ACAAAATAGCCAAGGCCTCG 58.536 50.000 5.23 0.00 43.17 4.63
1943 4764 6.922957 TCTTCCAACAATCCGAATTCTTTTTG 59.077 34.615 3.52 6.71 0.00 2.44
2068 4891 2.425312 CCATTAACAAGCCGCCATAACA 59.575 45.455 0.00 0.00 0.00 2.41
2078 4901 4.173256 CCCGTTGATTTCCATTAACAAGC 58.827 43.478 0.00 0.00 29.94 4.01
2096 4919 0.038166 TTAGTAGTCCACCGACCCGT 59.962 55.000 0.00 0.00 40.12 5.28
2103 4926 4.156008 CACTGGCAAAATTAGTAGTCCACC 59.844 45.833 0.00 0.00 0.00 4.61
2148 4971 1.884075 TTGGTCCATCGTCCGTCCTG 61.884 60.000 0.00 0.00 0.00 3.86
2151 4974 0.320073 TGTTTGGTCCATCGTCCGTC 60.320 55.000 0.00 0.00 0.00 4.79
2156 4979 1.686355 TTGCTTGTTTGGTCCATCGT 58.314 45.000 0.00 0.00 0.00 3.73
2191 5014 6.173427 ACATGAAACTACTTTTGCCCAAAT 57.827 33.333 0.00 0.00 0.00 2.32
2243 5072 2.327343 GCCAGCTTGTCACGCATGA 61.327 57.895 3.93 0.00 0.00 3.07
2244 5073 2.177531 GCCAGCTTGTCACGCATG 59.822 61.111 3.93 0.00 0.00 4.06
2245 5074 3.058160 GGCCAGCTTGTCACGCAT 61.058 61.111 0.00 0.00 0.00 4.73
2266 5095 4.158025 GTGGAGAAAGAGATACGGAGAACA 59.842 45.833 0.00 0.00 0.00 3.18
2319 5148 9.088987 CCTTTTTGGCCCATATAAACATACTAT 57.911 33.333 0.00 0.00 0.00 2.12
2370 5202 0.817654 CCGGCATCTGAGTCACTACA 59.182 55.000 0.00 0.00 0.00 2.74
2427 5259 4.839668 AAGCTATAGTACTTCAGCGAGG 57.160 45.455 17.76 0.00 39.04 4.63
2428 5260 5.701750 TCCTAAGCTATAGTACTTCAGCGAG 59.298 44.000 17.76 17.54 39.04 5.03
2429 5261 5.469421 GTCCTAAGCTATAGTACTTCAGCGA 59.531 44.000 17.76 11.67 39.04 4.93
2430 5262 5.470777 AGTCCTAAGCTATAGTACTTCAGCG 59.529 44.000 17.76 8.06 39.04 5.18
2431 5263 6.487331 TCAGTCCTAAGCTATAGTACTTCAGC 59.513 42.308 16.67 16.67 0.00 4.26
2432 5264 8.630054 ATCAGTCCTAAGCTATAGTACTTCAG 57.370 38.462 0.00 0.00 0.00 3.02
2433 5265 8.851145 CAATCAGTCCTAAGCTATAGTACTTCA 58.149 37.037 0.00 0.00 0.00 3.02
2434 5266 8.852135 ACAATCAGTCCTAAGCTATAGTACTTC 58.148 37.037 0.00 0.00 0.00 3.01
2435 5267 8.770010 ACAATCAGTCCTAAGCTATAGTACTT 57.230 34.615 0.00 0.00 0.00 2.24
2436 5268 8.634444 CAACAATCAGTCCTAAGCTATAGTACT 58.366 37.037 0.00 0.00 0.00 2.73
2437 5269 8.630917 TCAACAATCAGTCCTAAGCTATAGTAC 58.369 37.037 0.84 0.00 0.00 2.73
2438 5270 8.762481 TCAACAATCAGTCCTAAGCTATAGTA 57.238 34.615 0.84 0.00 0.00 1.82
2439 5271 7.661536 TCAACAATCAGTCCTAAGCTATAGT 57.338 36.000 0.84 0.00 0.00 2.12
2440 5272 8.986847 CAATCAACAATCAGTCCTAAGCTATAG 58.013 37.037 0.00 0.00 0.00 1.31
2441 5273 7.933577 CCAATCAACAATCAGTCCTAAGCTATA 59.066 37.037 0.00 0.00 0.00 1.31
2442 5274 6.769822 CCAATCAACAATCAGTCCTAAGCTAT 59.230 38.462 0.00 0.00 0.00 2.97
2443 5275 6.115446 CCAATCAACAATCAGTCCTAAGCTA 58.885 40.000 0.00 0.00 0.00 3.32
2444 5276 4.946157 CCAATCAACAATCAGTCCTAAGCT 59.054 41.667 0.00 0.00 0.00 3.74
2445 5277 4.702131 ACCAATCAACAATCAGTCCTAAGC 59.298 41.667 0.00 0.00 0.00 3.09
2446 5278 6.824305 AACCAATCAACAATCAGTCCTAAG 57.176 37.500 0.00 0.00 0.00 2.18
2447 5279 7.286546 TGAAAACCAATCAACAATCAGTCCTAA 59.713 33.333 0.00 0.00 0.00 2.69
2448 5280 6.775142 TGAAAACCAATCAACAATCAGTCCTA 59.225 34.615 0.00 0.00 0.00 2.94
2449 5281 5.598005 TGAAAACCAATCAACAATCAGTCCT 59.402 36.000 0.00 0.00 0.00 3.85
2450 5282 5.841810 TGAAAACCAATCAACAATCAGTCC 58.158 37.500 0.00 0.00 0.00 3.85
2451 5283 6.738114 TCTGAAAACCAATCAACAATCAGTC 58.262 36.000 0.00 0.00 35.66 3.51
2452 5284 6.713762 TCTGAAAACCAATCAACAATCAGT 57.286 33.333 0.00 0.00 35.66 3.41
2453 5285 7.487189 GCTATCTGAAAACCAATCAACAATCAG 59.513 37.037 0.00 0.00 35.53 2.90
2454 5286 7.177216 AGCTATCTGAAAACCAATCAACAATCA 59.823 33.333 0.00 0.00 0.00 2.57
2455 5287 7.542025 AGCTATCTGAAAACCAATCAACAATC 58.458 34.615 0.00 0.00 0.00 2.67
2456 5288 7.472334 AGCTATCTGAAAACCAATCAACAAT 57.528 32.000 0.00 0.00 0.00 2.71
2457 5289 6.899393 AGCTATCTGAAAACCAATCAACAA 57.101 33.333 0.00 0.00 0.00 2.83
2458 5290 6.899393 AAGCTATCTGAAAACCAATCAACA 57.101 33.333 0.00 0.00 0.00 3.33
2459 5291 7.251281 GGTAAGCTATCTGAAAACCAATCAAC 58.749 38.462 0.00 0.00 0.00 3.18
2460 5292 6.093495 CGGTAAGCTATCTGAAAACCAATCAA 59.907 38.462 0.00 0.00 0.00 2.57
2461 5293 5.584649 CGGTAAGCTATCTGAAAACCAATCA 59.415 40.000 0.00 0.00 0.00 2.57
2462 5294 5.504173 GCGGTAAGCTATCTGAAAACCAATC 60.504 44.000 0.00 0.00 44.04 2.67
2463 5295 4.335594 GCGGTAAGCTATCTGAAAACCAAT 59.664 41.667 0.00 0.00 44.04 3.16
2464 5296 3.687698 GCGGTAAGCTATCTGAAAACCAA 59.312 43.478 0.00 0.00 44.04 3.67
2465 5297 3.267483 GCGGTAAGCTATCTGAAAACCA 58.733 45.455 0.00 0.00 44.04 3.67
2466 5298 3.946308 GCGGTAAGCTATCTGAAAACC 57.054 47.619 0.00 0.00 44.04 3.27
2479 5311 3.199677 TGATTATCCAAACGGCGGTAAG 58.800 45.455 13.24 0.08 0.00 2.34
2480 5312 3.118702 TCTGATTATCCAAACGGCGGTAA 60.119 43.478 13.24 0.00 0.00 2.85
2481 5313 2.431419 TCTGATTATCCAAACGGCGGTA 59.569 45.455 13.24 0.00 0.00 4.02
2482 5314 1.208535 TCTGATTATCCAAACGGCGGT 59.791 47.619 13.24 0.00 0.00 5.68
2483 5315 1.948104 TCTGATTATCCAAACGGCGG 58.052 50.000 13.24 0.00 0.00 6.13
2484 5316 3.130633 TCATCTGATTATCCAAACGGCG 58.869 45.455 4.80 4.80 0.00 6.46
2485 5317 4.614535 GCATCATCTGATTATCCAAACGGC 60.615 45.833 0.00 0.00 31.21 5.68
2486 5318 4.083110 GGCATCATCTGATTATCCAAACGG 60.083 45.833 0.00 0.00 31.21 4.44
2487 5319 4.083110 GGGCATCATCTGATTATCCAAACG 60.083 45.833 0.00 0.00 31.21 3.60
2488 5320 4.083110 CGGGCATCATCTGATTATCCAAAC 60.083 45.833 0.00 0.00 31.21 2.93
2489 5321 4.074259 CGGGCATCATCTGATTATCCAAA 58.926 43.478 0.00 0.00 31.21 3.28
2490 5322 3.678289 CGGGCATCATCTGATTATCCAA 58.322 45.455 0.00 0.00 31.21 3.53
2491 5323 2.616256 GCGGGCATCATCTGATTATCCA 60.616 50.000 0.00 0.00 31.21 3.41
2492 5324 2.012673 GCGGGCATCATCTGATTATCC 58.987 52.381 0.00 0.00 31.21 2.59
2493 5325 2.703416 TGCGGGCATCATCTGATTATC 58.297 47.619 0.00 0.00 31.21 1.75
2494 5326 2.865119 TGCGGGCATCATCTGATTAT 57.135 45.000 0.00 0.00 31.21 1.28
2495 5327 2.636647 TTGCGGGCATCATCTGATTA 57.363 45.000 0.00 0.00 31.21 1.75
2496 5328 1.611977 CATTGCGGGCATCATCTGATT 59.388 47.619 0.00 0.00 31.21 2.57
2497 5329 1.244816 CATTGCGGGCATCATCTGAT 58.755 50.000 0.00 0.00 34.56 2.90
2498 5330 0.107066 ACATTGCGGGCATCATCTGA 60.107 50.000 0.00 0.00 0.00 3.27
2499 5331 0.742505 AACATTGCGGGCATCATCTG 59.257 50.000 0.00 0.00 0.00 2.90
2500 5332 0.742505 CAACATTGCGGGCATCATCT 59.257 50.000 0.00 0.00 0.00 2.90
2501 5333 0.457035 ACAACATTGCGGGCATCATC 59.543 50.000 0.00 0.00 0.00 2.92
2502 5334 0.896923 AACAACATTGCGGGCATCAT 59.103 45.000 0.00 0.00 0.00 2.45
2503 5335 0.038435 CAACAACATTGCGGGCATCA 60.038 50.000 0.00 0.00 0.00 3.07
2504 5336 1.353609 GCAACAACATTGCGGGCATC 61.354 55.000 0.00 0.00 35.58 3.91
2505 5337 1.374505 GCAACAACATTGCGGGCAT 60.375 52.632 0.00 0.00 35.58 4.40
2506 5338 2.028778 GCAACAACATTGCGGGCA 59.971 55.556 0.00 0.00 35.58 5.36
2511 5343 2.645730 TATTCCCGCAACAACATTGC 57.354 45.000 1.48 1.48 41.71 3.56
2512 5344 5.407995 ACAAAATATTCCCGCAACAACATTG 59.592 36.000 0.00 0.00 0.00 2.82
2513 5345 5.546526 ACAAAATATTCCCGCAACAACATT 58.453 33.333 0.00 0.00 0.00 2.71
2514 5346 5.146010 ACAAAATATTCCCGCAACAACAT 57.854 34.783 0.00 0.00 0.00 2.71
2515 5347 4.592485 ACAAAATATTCCCGCAACAACA 57.408 36.364 0.00 0.00 0.00 3.33
2516 5348 7.971722 AGTATTACAAAATATTCCCGCAACAAC 59.028 33.333 0.00 0.00 30.42 3.32
2517 5349 8.057536 AGTATTACAAAATATTCCCGCAACAA 57.942 30.769 0.00 0.00 30.42 2.83
2518 5350 7.633193 AGTATTACAAAATATTCCCGCAACA 57.367 32.000 0.00 0.00 30.42 3.33
2519 5351 8.833493 ACTAGTATTACAAAATATTCCCGCAAC 58.167 33.333 0.00 0.00 30.42 4.17
2520 5352 8.967664 ACTAGTATTACAAAATATTCCCGCAA 57.032 30.769 0.00 0.00 30.42 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.