Multiple sequence alignment - TraesCS5A01G510300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G510300 chr5A 100.000 5463 0 0 1 5463 673834897 673840359 0.000000e+00 10089.0
1 TraesCS5A01G510300 chr5A 91.742 1877 128 9 986 2841 673932469 673934339 0.000000e+00 2582.0
2 TraesCS5A01G510300 chr5A 85.985 792 84 19 3771 4547 673935283 673936062 0.000000e+00 822.0
3 TraesCS5A01G510300 chr5A 85.584 770 97 12 1 760 415159607 415160372 0.000000e+00 795.0
4 TraesCS5A01G510300 chr5A 87.894 603 58 8 3135 3734 673934689 673935279 0.000000e+00 695.0
5 TraesCS5A01G510300 chr5A 89.384 292 30 1 1128 1419 673937447 673937737 3.110000e-97 366.0
6 TraesCS5A01G510300 chr5A 90.135 223 21 1 1623 1845 673938794 673939015 6.920000e-74 289.0
7 TraesCS5A01G510300 chr5A 92.908 141 9 1 5324 5463 673878081 673877941 2.580000e-48 204.0
8 TraesCS5A01G510300 chr4D 94.828 4737 169 33 776 5463 494514479 494509770 0.000000e+00 7321.0
9 TraesCS5A01G510300 chr4D 92.050 1937 123 12 996 2921 494476428 494474512 0.000000e+00 2695.0
10 TraesCS5A01G510300 chr4D 84.837 798 84 17 3774 4549 494473661 494472879 0.000000e+00 769.0
11 TraesCS5A01G510300 chr4D 89.775 577 49 6 3161 3734 494474237 494473668 0.000000e+00 730.0
12 TraesCS5A01G510300 chr4D 87.444 446 34 7 3167 3595 494507640 494507200 1.370000e-135 494.0
13 TraesCS5A01G510300 chr4D 91.150 226 20 0 2616 2841 494508121 494507896 1.910000e-79 307.0
14 TraesCS5A01G510300 chr4D 95.556 45 2 0 3730 3774 494511567 494511523 7.590000e-09 73.1
15 TraesCS5A01G510300 chr4B 92.514 2578 140 22 2878 5430 634077903 634075354 0.000000e+00 3642.0
16 TraesCS5A01G510300 chr4B 94.190 2100 106 9 760 2846 634079997 634077901 0.000000e+00 3188.0
17 TraesCS5A01G510300 chr4B 90.571 2068 144 20 996 3035 633936763 633934719 0.000000e+00 2691.0
18 TraesCS5A01G510300 chr4B 90.366 955 79 7 3771 4722 633933513 633932569 0.000000e+00 1242.0
19 TraesCS5A01G510300 chr4B 92.679 601 34 5 3135 3734 633934108 633933517 0.000000e+00 857.0
20 TraesCS5A01G510300 chr4B 90.426 188 16 2 3167 3353 634074035 634073849 4.230000e-61 246.0
21 TraesCS5A01G510300 chr6A 84.361 1752 171 42 1169 2834 467043273 467045007 0.000000e+00 1622.0
22 TraesCS5A01G510300 chr6A 83.871 713 90 14 3774 4470 467045941 467046644 0.000000e+00 656.0
23 TraesCS5A01G510300 chr6A 86.332 578 58 14 3158 3723 467045357 467045925 1.300000e-170 610.0
24 TraesCS5A01G510300 chr6B 84.226 1756 171 42 1169 2841 492189850 492191582 0.000000e+00 1611.0
25 TraesCS5A01G510300 chr6B 84.404 763 104 10 1 758 116748286 116749038 0.000000e+00 736.0
26 TraesCS5A01G510300 chr6B 86.159 578 63 12 3158 3725 492191857 492192427 4.680000e-170 608.0
27 TraesCS5A01G510300 chr6B 90.444 293 28 0 4178 4470 492193049 492193341 2.390000e-103 387.0
28 TraesCS5A01G510300 chr6B 89.437 284 30 0 3797 4080 492192589 492192872 5.200000e-95 359.0
29 TraesCS5A01G510300 chr6D 84.073 1758 173 42 1169 2841 328329392 328331127 0.000000e+00 1596.0
30 TraesCS5A01G510300 chr6D 84.211 760 103 14 1 753 448820422 448819673 0.000000e+00 723.0
31 TraesCS5A01G510300 chr6D 85.983 585 63 12 3158 3731 328331399 328331975 4.680000e-170 608.0
32 TraesCS5A01G510300 chr6D 89.796 294 30 0 4177 4470 328332463 328332756 1.440000e-100 377.0
33 TraesCS5A01G510300 chr6D 87.987 308 37 0 3774 4081 328331983 328332290 1.120000e-96 364.0
34 TraesCS5A01G510300 chr5D 85.340 764 100 9 1 754 421491397 421490636 0.000000e+00 780.0
35 TraesCS5A01G510300 chr5B 85.039 762 99 7 1 754 470515657 470516411 0.000000e+00 761.0
36 TraesCS5A01G510300 chr7D 84.845 772 96 17 1 761 498253409 498252648 0.000000e+00 758.0
37 TraesCS5A01G510300 chr1A 84.544 757 101 13 6 758 70975635 70976379 0.000000e+00 736.0
38 TraesCS5A01G510300 chr1A 80.556 612 104 9 1822 2418 10159839 10159228 1.790000e-124 457.0
39 TraesCS5A01G510300 chr1A 85.813 289 41 0 4177 4465 10156040 10155752 1.910000e-79 307.0
40 TraesCS5A01G510300 chr3A 84.204 766 101 17 1 751 328930213 328930973 0.000000e+00 726.0
41 TraesCS5A01G510300 chr7B 83.984 768 109 12 1 760 99137837 99138598 0.000000e+00 725.0
42 TraesCS5A01G510300 chr1D 82.111 341 59 2 3409 3749 8958602 8958940 1.930000e-74 291.0
43 TraesCS5A01G510300 chrUn 92.908 141 9 1 5324 5463 311601354 311601214 2.580000e-48 204.0
44 TraesCS5A01G510300 chrUn 92.908 141 9 1 5324 5463 324963926 324963786 2.580000e-48 204.0
45 TraesCS5A01G510300 chr1B 88.462 52 4 2 5278 5329 452801452 452801501 1.640000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G510300 chr5A 673834897 673840359 5462 False 10089.000000 10089 100.000000 1 5463 1 chr5A.!!$F2 5462
1 TraesCS5A01G510300 chr5A 673932469 673939015 6546 False 950.800000 2582 89.028000 986 4547 5 chr5A.!!$F3 3561
2 TraesCS5A01G510300 chr5A 415159607 415160372 765 False 795.000000 795 85.584000 1 760 1 chr5A.!!$F1 759
3 TraesCS5A01G510300 chr4D 494507200 494514479 7279 True 2048.775000 7321 92.244500 776 5463 4 chr4D.!!$R2 4687
4 TraesCS5A01G510300 chr4D 494472879 494476428 3549 True 1398.000000 2695 88.887333 996 4549 3 chr4D.!!$R1 3553
5 TraesCS5A01G510300 chr4B 634073849 634079997 6148 True 2358.666667 3642 92.376667 760 5430 3 chr4B.!!$R2 4670
6 TraesCS5A01G510300 chr4B 633932569 633936763 4194 True 1596.666667 2691 91.205333 996 4722 3 chr4B.!!$R1 3726
7 TraesCS5A01G510300 chr6A 467043273 467046644 3371 False 962.666667 1622 84.854667 1169 4470 3 chr6A.!!$F1 3301
8 TraesCS5A01G510300 chr6B 492189850 492193341 3491 False 741.250000 1611 87.566500 1169 4470 4 chr6B.!!$F2 3301
9 TraesCS5A01G510300 chr6B 116748286 116749038 752 False 736.000000 736 84.404000 1 758 1 chr6B.!!$F1 757
10 TraesCS5A01G510300 chr6D 328329392 328332756 3364 False 736.250000 1596 86.959750 1169 4470 4 chr6D.!!$F1 3301
11 TraesCS5A01G510300 chr6D 448819673 448820422 749 True 723.000000 723 84.211000 1 753 1 chr6D.!!$R1 752
12 TraesCS5A01G510300 chr5D 421490636 421491397 761 True 780.000000 780 85.340000 1 754 1 chr5D.!!$R1 753
13 TraesCS5A01G510300 chr5B 470515657 470516411 754 False 761.000000 761 85.039000 1 754 1 chr5B.!!$F1 753
14 TraesCS5A01G510300 chr7D 498252648 498253409 761 True 758.000000 758 84.845000 1 761 1 chr7D.!!$R1 760
15 TraesCS5A01G510300 chr1A 70975635 70976379 744 False 736.000000 736 84.544000 6 758 1 chr1A.!!$F1 752
16 TraesCS5A01G510300 chr1A 10155752 10159839 4087 True 382.000000 457 83.184500 1822 4465 2 chr1A.!!$R1 2643
17 TraesCS5A01G510300 chr3A 328930213 328930973 760 False 726.000000 726 84.204000 1 751 1 chr3A.!!$F1 750
18 TraesCS5A01G510300 chr7B 99137837 99138598 761 False 725.000000 725 83.984000 1 760 1 chr7B.!!$F1 759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 321 0.315886 ACATGCGACTACCGACACAA 59.684 50.000 0.0 0.0 41.76 3.33 F
919 964 0.389948 GCTCCACGTCGTTCTCCATT 60.390 55.000 0.0 0.0 0.00 3.16 F
1554 1670 0.390472 CCTTCAAGGACCGACAGAGC 60.390 60.000 0.0 0.0 37.67 4.09 F
2271 2459 0.612174 TGCTACTCTGCCTCCTCGTT 60.612 55.000 0.0 0.0 0.00 3.85 F
2836 3039 1.351350 AGCCTGGTTCCAAGTAAGGAC 59.649 52.381 0.0 0.0 37.42 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1664 0.039035 AAGAGGACGAGGAGCTCTGT 59.961 55.000 14.64 10.01 0.00 3.41 R
1817 1975 1.605058 CTCGATGGGACCCGACTTGT 61.605 60.000 5.91 0.00 0.00 3.16 R
2667 2870 3.424198 TCTCGAAACGAACAATCTTCACG 59.576 43.478 0.00 0.00 34.74 4.35 R
4214 6843 1.003839 GGAGGACAACCATCGCACA 60.004 57.895 0.00 0.00 38.94 4.57 R
4740 7374 1.212935 GTGGGCCTCAGTGATAACCAT 59.787 52.381 4.53 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.199937 AGAATTGGGTCAATCGATTTTGAG 57.800 37.500 8.21 0.00 36.34 3.02
173 174 3.613494 TGGTTTATGATTTCGACCGGA 57.387 42.857 9.46 0.00 33.07 5.14
315 321 0.315886 ACATGCGACTACCGACACAA 59.684 50.000 0.00 0.00 41.76 3.33
317 323 1.126113 CATGCGACTACCGACACAAAC 59.874 52.381 0.00 0.00 41.76 2.93
325 332 4.457466 ACTACCGACACAAACATTTCCTT 58.543 39.130 0.00 0.00 0.00 3.36
390 398 3.784178 TGAAAGGCCCACCAAATAATCA 58.216 40.909 0.00 0.00 39.06 2.57
468 482 9.846248 AAATATTTCATCAGTCAAACTGTAAGC 57.154 29.630 6.96 0.00 46.03 3.09
726 759 0.393132 TCCAACAACACCAACAGCGA 60.393 50.000 0.00 0.00 0.00 4.93
754 787 1.202486 CGCGCCCAATCCTTCTAGTAA 60.202 52.381 0.00 0.00 0.00 2.24
845 881 1.076332 CCCTTCGATCGTGTCCAAAC 58.924 55.000 15.94 0.00 0.00 2.93
847 883 1.606994 CCTTCGATCGTGTCCAAACCA 60.607 52.381 15.94 0.00 0.00 3.67
886 931 4.444024 CGATGCGTGCGGTGTTGG 62.444 66.667 0.00 0.00 0.00 3.77
890 935 3.427425 GCGTGCGGTGTTGGCATA 61.427 61.111 0.00 0.00 43.19 3.14
919 964 0.389948 GCTCCACGTCGTTCTCCATT 60.390 55.000 0.00 0.00 0.00 3.16
924 969 0.892755 ACGTCGTTCTCCATTGCCTA 59.107 50.000 0.00 0.00 0.00 3.93
981 1036 2.592796 ATTTTGCCGCAAAAATTCGC 57.407 40.000 29.65 0.00 44.68 4.70
988 1043 1.843344 GCAAAAATTCGCGCGTGTT 59.157 47.368 30.98 21.72 0.00 3.32
989 1044 0.447101 GCAAAAATTCGCGCGTGTTG 60.447 50.000 30.98 22.05 0.00 3.33
990 1045 0.843242 CAAAAATTCGCGCGTGTTGT 59.157 45.000 30.98 17.42 0.00 3.32
1071 1133 1.372997 GACGCGGTCAGAAGAGCAA 60.373 57.895 12.47 0.00 42.32 3.91
1303 1386 3.330267 GACTTCAGCTTCAAGAATCGGT 58.670 45.455 8.86 0.00 0.00 4.69
1422 1535 2.124942 CTCCGGAAGCAGAAGGCC 60.125 66.667 5.23 0.00 46.50 5.19
1459 1575 1.064946 CTCGACCTCGACATGGAGC 59.935 63.158 0.00 0.00 44.22 4.70
1548 1664 0.966920 GTGTCTCCTTCAAGGACCGA 59.033 55.000 0.34 0.00 40.06 4.69
1554 1670 0.390472 CCTTCAAGGACCGACAGAGC 60.390 60.000 0.00 0.00 37.67 4.09
2271 2459 0.612174 TGCTACTCTGCCTCCTCGTT 60.612 55.000 0.00 0.00 0.00 3.85
2346 2534 4.162320 TCCTTCCATGTCTCCACATACTTC 59.838 45.833 0.00 0.00 41.69 3.01
2836 3039 1.351350 AGCCTGGTTCCAAGTAAGGAC 59.649 52.381 0.00 0.00 37.42 3.85
2936 4664 5.228579 GCTCTAGGAATTTTGAGCTCAAC 57.771 43.478 28.46 16.52 45.78 3.18
3147 5499 7.817418 AGATCACTACTTAGTTCTCAGGATC 57.183 40.000 0.00 0.00 33.46 3.36
3155 5507 5.186021 ACTTAGTTCTCAGGATCGTGACAAT 59.814 40.000 13.94 6.11 0.00 2.71
3353 5705 8.211629 GTGGTACTGATCTTATTATTGACCCTT 58.788 37.037 0.00 0.00 0.00 3.95
3354 5706 8.778059 TGGTACTGATCTTATTATTGACCCTTT 58.222 33.333 0.00 0.00 0.00 3.11
3355 5707 9.274206 GGTACTGATCTTATTATTGACCCTTTC 57.726 37.037 0.00 0.00 0.00 2.62
3368 5720 9.656323 TTATTGACCCTTTCTAGCTATCTTAGA 57.344 33.333 0.00 0.00 0.00 2.10
3381 5753 5.654209 AGCTATCTTAGATGCATCGACCATA 59.346 40.000 20.67 14.03 0.00 2.74
3398 5772 9.784531 ATCGACCATAAAGATGTCATTTCTAAT 57.215 29.630 0.00 0.00 0.00 1.73
3460 5835 2.873288 CGCAAAGCTCTTGCCCTC 59.127 61.111 20.54 2.71 42.10 4.30
3595 5970 5.237344 ACATTTCTTTGTCTTCCTCAGTTCG 59.763 40.000 0.00 0.00 0.00 3.95
3898 6399 8.932791 ACAACAATCTTTCTTCGTTACGATAAT 58.067 29.630 8.67 0.00 35.23 1.28
4146 6773 3.760151 TCTTTTGCCACATCAGATTGGAG 59.240 43.478 13.11 4.70 34.46 3.86
4214 6843 2.644151 AGAAGGAACATTGGTACCCCT 58.356 47.619 10.07 4.21 0.00 4.79
4473 7102 0.182537 TATTCATGAAGTGGCGGGGG 59.817 55.000 14.54 0.00 0.00 5.40
4518 7147 9.908152 CATATACAACAATTACCGTCTCTATGA 57.092 33.333 0.00 0.00 0.00 2.15
4740 7374 7.915293 ATGGTTTGACGATTACAGATTAACA 57.085 32.000 0.00 0.00 0.00 2.41
4807 7441 4.080299 GGGTGGTTAGTTGAGGATCTCATT 60.080 45.833 0.00 0.00 40.39 2.57
4809 7443 5.338381 GGTGGTTAGTTGAGGATCTCATTCA 60.338 44.000 0.00 0.00 40.39 2.57
4829 7464 8.597167 TCATTCATAGTTAGACCCCTTATGATG 58.403 37.037 0.00 0.00 0.00 3.07
4888 7523 2.418746 CCTGCCGTGTTAGCACTTATCT 60.419 50.000 8.15 0.00 43.16 1.98
4944 7579 9.466497 AGTTTCACATGTATTTTAGGTGATCAT 57.534 29.630 0.00 0.00 38.19 2.45
4957 7592 4.910195 AGGTGATCATTTAGCTTGTCACA 58.090 39.130 0.00 0.00 38.10 3.58
4976 7611 4.521639 TCACACAGTTCTACGTGTTAGGAT 59.478 41.667 0.00 0.00 43.71 3.24
4990 7625 5.163723 CGTGTTAGGATCCTTGTTACGACTA 60.164 44.000 22.03 0.00 0.00 2.59
5045 7680 1.064060 GTTTGCAGAGCTGAAACGTGT 59.936 47.619 0.85 0.00 0.00 4.49
5067 7702 7.358435 CGTGTAGCTATGGTGAGAAAATTATCG 60.358 40.741 0.00 0.00 0.00 2.92
5072 7707 7.868415 AGCTATGGTGAGAAAATTATCGTAGAC 59.132 37.037 0.00 0.00 42.51 2.59
5099 7739 7.916977 ACCATGACAAATTTATTGATCACATCG 59.083 33.333 0.00 0.00 0.00 3.84
5422 9248 6.450845 TTTTCATCGTGAAATGACATTTGC 57.549 33.333 18.00 9.49 44.75 3.68
5449 9275 4.055360 GCCGTGGCTAAAAGAACAAAATT 58.945 39.130 2.98 0.00 38.26 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.305201 TTGAGAAAGTGTTGACCCGC 58.695 50.000 0.00 0.00 0.00 6.13
97 98 9.547279 AAAGAGGTTCAAAATTAAGGGATATGT 57.453 29.630 0.00 0.00 0.00 2.29
117 118 8.327941 TGAATAACTCAACTGATTGAAAGAGG 57.672 34.615 0.00 0.00 44.28 3.69
149 150 6.037391 GTCCGGTCGAAATCATAAACCAAATA 59.963 38.462 0.00 0.00 0.00 1.40
173 174 5.665459 TGATTGATTTGAAAAACCGTTGGT 58.335 33.333 0.00 0.00 37.65 3.67
337 344 4.839121 TCTGTGTTATCCGCTAACCAATT 58.161 39.130 4.33 0.00 39.23 2.32
461 473 8.922058 TTCTAGAAACTTAATACCGCTTACAG 57.078 34.615 1.68 0.00 0.00 2.74
463 475 9.363763 ACTTTCTAGAAACTTAATACCGCTTAC 57.636 33.333 13.99 0.00 0.00 2.34
726 759 1.372872 GATTGGGCGCGTTTTGCTT 60.373 52.632 8.43 0.00 43.27 3.91
733 766 1.144057 CTAGAAGGATTGGGCGCGT 59.856 57.895 8.43 0.00 0.00 6.01
769 802 6.981762 ATCAGTCTTGCTAAATCTTGTCTG 57.018 37.500 0.00 0.00 0.00 3.51
770 803 6.128063 GCAATCAGTCTTGCTAAATCTTGTCT 60.128 38.462 1.72 0.00 46.32 3.41
772 805 5.947443 GCAATCAGTCTTGCTAAATCTTGT 58.053 37.500 1.72 0.00 46.32 3.16
773 806 6.570957 TTGGCAATCAGTCTTGCTAAATCTTG 60.571 38.462 8.51 0.00 45.71 3.02
774 807 5.477984 TTGGCAATCAGTCTTGCTAAATCTT 59.522 36.000 8.51 0.00 45.71 2.40
845 881 3.297620 GGCAGGCTGTGGTTGTGG 61.298 66.667 17.16 0.00 0.00 4.17
847 883 2.519302 GTGGCAGGCTGTGGTTGT 60.519 61.111 17.16 0.00 0.00 3.32
886 931 2.533266 GTGGAGCAGCACAAAATATGC 58.467 47.619 0.00 0.00 43.74 3.14
889 934 1.804151 GACGTGGAGCAGCACAAAATA 59.196 47.619 0.00 0.00 0.00 1.40
890 935 0.593128 GACGTGGAGCAGCACAAAAT 59.407 50.000 0.00 0.00 0.00 1.82
919 964 2.506644 GGGGTGTGGTATTAACTAGGCA 59.493 50.000 0.00 0.00 0.00 4.75
924 969 0.913924 CCCGGGGTGTGGTATTAACT 59.086 55.000 14.71 0.00 0.00 2.24
972 1027 1.117234 GACAACACGCGCGAATTTTT 58.883 45.000 39.36 18.17 0.00 1.94
988 1043 4.124351 GTCCATCGCCGACGGACA 62.124 66.667 25.78 2.24 46.98 4.02
1071 1133 1.892819 CGAGGTCAGACAGCATGGGT 61.893 60.000 2.17 0.00 43.62 4.51
1389 1490 1.196012 GGAGGAAGTTCCCGATGAGT 58.804 55.000 18.65 0.00 37.19 3.41
1459 1575 2.005960 GACCTCCCGATGTCGTCCAG 62.006 65.000 1.44 0.00 37.74 3.86
1548 1664 0.039035 AAGAGGACGAGGAGCTCTGT 59.961 55.000 14.64 10.01 0.00 3.41
1554 1670 0.665835 CGGATGAAGAGGACGAGGAG 59.334 60.000 0.00 0.00 0.00 3.69
1627 1746 0.819259 GTGGAAGCAGAGGTGTTGCA 60.819 55.000 0.00 0.00 43.92 4.08
1817 1975 1.605058 CTCGATGGGACCCGACTTGT 61.605 60.000 5.91 0.00 0.00 3.16
2346 2534 2.653702 GCCTCCTGGATCCGATCG 59.346 66.667 8.51 8.51 34.57 3.69
2667 2870 3.424198 TCTCGAAACGAACAATCTTCACG 59.576 43.478 0.00 0.00 34.74 4.35
2998 4758 9.573133 GTCTAACAATTATGTAGCATGCTTTTT 57.427 29.630 28.02 13.00 39.40 1.94
3196 5548 5.620654 GCCAAGTATATGTGCCTGCATTATG 60.621 44.000 0.00 0.00 0.00 1.90
3353 5705 6.127869 GGTCGATGCATCTAAGATAGCTAGAA 60.128 42.308 23.73 0.00 0.00 2.10
3354 5706 5.355630 GGTCGATGCATCTAAGATAGCTAGA 59.644 44.000 23.73 6.76 0.00 2.43
3355 5707 5.124617 TGGTCGATGCATCTAAGATAGCTAG 59.875 44.000 23.73 4.47 0.00 3.42
3356 5708 5.010282 TGGTCGATGCATCTAAGATAGCTA 58.990 41.667 23.73 0.00 0.00 3.32
3357 5709 3.829026 TGGTCGATGCATCTAAGATAGCT 59.171 43.478 23.73 0.00 0.00 3.32
3368 5720 4.707105 TGACATCTTTATGGTCGATGCAT 58.293 39.130 0.00 0.00 38.42 3.96
3398 5772 9.908152 CTACAGAACGAACCATATGATATAACA 57.092 33.333 3.65 0.00 0.00 2.41
3460 5835 6.195868 TGCTGTTTTTGTATCGTTAAGTGTG 58.804 36.000 0.00 0.00 0.00 3.82
3595 5970 1.285023 CACTGCCACAAGAAGCTGC 59.715 57.895 0.00 0.00 0.00 5.25
3765 6141 7.417612 ACATAAATAAGTAGCGCCAATTTCAG 58.582 34.615 2.29 2.89 0.00 3.02
3802 6303 2.253603 GTCAATCGACAAATGCAAGGC 58.746 47.619 0.00 0.00 42.13 4.35
3898 6399 7.942341 ACACTGTTTGGGTAATAGATCTTCAAA 59.058 33.333 0.00 0.88 0.00 2.69
4214 6843 1.003839 GGAGGACAACCATCGCACA 60.004 57.895 0.00 0.00 38.94 4.57
4473 7102 8.255206 TGTATATGTGGTATCATAACGGGATTC 58.745 37.037 0.00 0.00 34.58 2.52
4518 7147 1.977854 TGCTACCAGTTCTCACCACAT 59.022 47.619 0.00 0.00 0.00 3.21
4692 7321 6.633500 AAGTGTAGCATTGCTTTGTCTAAA 57.367 33.333 17.71 0.00 40.44 1.85
4693 7322 7.148255 CCATAAGTGTAGCATTGCTTTGTCTAA 60.148 37.037 17.71 0.00 40.44 2.10
4740 7374 1.212935 GTGGGCCTCAGTGATAACCAT 59.787 52.381 4.53 0.00 0.00 3.55
4807 7441 7.310671 GCATCATCATAAGGGGTCTAACTATGA 60.311 40.741 0.00 0.00 0.00 2.15
4809 7443 6.732862 AGCATCATCATAAGGGGTCTAACTAT 59.267 38.462 0.00 0.00 0.00 2.12
4829 7464 6.934048 AAAATTGCTAGACCTAAGAGCATC 57.066 37.500 0.00 0.00 45.20 3.91
4855 7490 0.107848 ACGGCAGGCTTGTGTATACC 60.108 55.000 0.00 0.00 0.00 2.73
4888 7523 2.100584 ACTTGCAGAAACGAAATGCCAA 59.899 40.909 0.00 0.00 39.22 4.52
4944 7579 4.743151 CGTAGAACTGTGTGACAAGCTAAA 59.257 41.667 0.00 0.00 0.00 1.85
4957 7592 4.342359 AGGATCCTAACACGTAGAACTGT 58.658 43.478 14.27 0.00 30.50 3.55
4976 7611 2.028748 GCAACCCTAGTCGTAACAAGGA 60.029 50.000 0.00 0.00 0.00 3.36
4990 7625 1.377725 CATCTTCGCCTGCAACCCT 60.378 57.895 0.00 0.00 0.00 4.34
5045 7680 9.074576 TCTACGATAATTTTCTCACCATAGCTA 57.925 33.333 0.00 0.00 0.00 3.32
5067 7702 9.722056 GATCAATAAATTTGTCATGGTGTCTAC 57.278 33.333 0.00 0.00 0.00 2.59
5072 7707 8.936070 ATGTGATCAATAAATTTGTCATGGTG 57.064 30.769 0.00 0.00 0.00 4.17
5123 7763 3.887110 TGCCATGGAAATGAAGCTGATAG 59.113 43.478 18.40 0.00 0.00 2.08
5130 7770 6.383415 CCAAAAATTTGCCATGGAAATGAAG 58.617 36.000 18.40 9.36 36.86 3.02
5133 7773 4.022242 TGCCAAAAATTTGCCATGGAAATG 60.022 37.500 18.40 5.93 36.86 2.32
5356 9180 6.201226 TGTCAATGCTTGTGACTTAAACAA 57.799 33.333 13.62 0.00 44.70 2.83
5358 9182 7.698836 AATTGTCAATGCTTGTGACTTAAAC 57.301 32.000 13.62 0.00 44.70 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.