Multiple sequence alignment - TraesCS5A01G508400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G508400 chr5A 100.000 6155 0 0 1 6155 672827953 672821799 0.000000e+00 11367.0
1 TraesCS5A01G508400 chr5A 91.658 959 79 1 3142 4099 577920110 577921068 0.000000e+00 1327.0
2 TraesCS5A01G508400 chr5A 88.088 680 70 11 4187 4859 672509725 672509050 0.000000e+00 797.0
3 TraesCS5A01G508400 chr5A 84.416 462 50 13 914 1370 672510213 672509769 9.480000e-118 435.0
4 TraesCS5A01G508400 chr5A 79.505 283 50 5 5806 6085 244751371 244751648 1.750000e-45 195.0
5 TraesCS5A01G508400 chr5A 92.045 88 7 0 5510 5597 109193502 109193589 2.330000e-24 124.0
6 TraesCS5A01G508400 chr5A 90.217 92 6 3 3065 3155 397512287 397512376 3.900000e-22 117.0
7 TraesCS5A01G508400 chr5A 92.857 42 3 0 5695 5736 672507954 672507913 1.850000e-05 62.1
8 TraesCS5A01G508400 chr4B 95.411 2637 95 12 462 3078 631531822 631529192 0.000000e+00 4176.0
9 TraesCS5A01G508400 chr4B 96.859 764 23 1 4097 4859 631529207 631528444 0.000000e+00 1277.0
10 TraesCS5A01G508400 chr4B 90.669 718 34 15 5050 5762 631528295 631527606 0.000000e+00 924.0
11 TraesCS5A01G508400 chr4B 87.794 680 70 12 4187 4859 631070951 631071624 0.000000e+00 784.0
12 TraesCS5A01G508400 chr4B 86.534 401 38 10 972 1367 631070515 631070904 1.590000e-115 427.0
13 TraesCS5A01G508400 chr4B 94.215 242 14 0 1 242 631532250 631532009 2.710000e-98 370.0
14 TraesCS5A01G508400 chr4B 83.481 339 42 8 5055 5384 631071764 631072097 2.790000e-78 303.0
15 TraesCS5A01G508400 chr4B 86.076 158 8 5 322 466 631532011 631531855 2.300000e-34 158.0
16 TraesCS5A01G508400 chr4B 90.588 85 8 0 5510 5594 480921884 480921800 5.040000e-21 113.0
17 TraesCS5A01G508400 chr4B 84.685 111 9 5 5628 5736 631072666 631072770 3.030000e-18 104.0
18 TraesCS5A01G508400 chr4D 96.473 1276 35 2 706 1971 493738312 493739587 0.000000e+00 2098.0
19 TraesCS5A01G508400 chr4D 95.118 1106 43 6 5050 6155 493758158 493759252 0.000000e+00 1733.0
20 TraesCS5A01G508400 chr4D 98.691 764 9 1 4097 4859 493757248 493758011 0.000000e+00 1354.0
21 TraesCS5A01G508400 chr4D 96.728 764 24 1 4097 4859 491949966 491949203 0.000000e+00 1271.0
22 TraesCS5A01G508400 chr4D 96.457 762 17 3 2287 3045 493753934 493754688 0.000000e+00 1249.0
23 TraesCS5A01G508400 chr4D 96.286 700 20 5 1 696 493736582 493737279 0.000000e+00 1144.0
24 TraesCS5A01G508400 chr4D 88.033 727 70 9 1580 2303 491951535 491950823 0.000000e+00 845.0
25 TraesCS5A01G508400 chr4D 88.235 680 69 11 4187 4859 492814932 492814257 0.000000e+00 802.0
26 TraesCS5A01G508400 chr4D 89.520 563 25 11 5055 5614 491949051 491948520 0.000000e+00 682.0
27 TraesCS5A01G508400 chr4D 85.342 614 55 20 2302 2905 491950764 491950176 2.450000e-168 603.0
28 TraesCS5A01G508400 chr4D 77.834 988 111 63 462 1370 492815934 492814976 4.260000e-141 512.0
29 TraesCS5A01G508400 chr4D 96.587 293 8 2 2001 2291 493739583 493739875 9.280000e-133 484.0
30 TraesCS5A01G508400 chr4D 92.715 151 10 1 5613 5762 491948464 491948314 3.740000e-52 217.0
31 TraesCS5A01G508400 chr4D 95.968 124 4 1 4860 4983 493758048 493758170 3.760000e-47 200.0
32 TraesCS5A01G508400 chr4D 92.742 124 6 2 4860 4981 491949166 491949044 6.340000e-40 176.0
33 TraesCS5A01G508400 chr4D 97.101 69 1 1 4983 5051 340562247 340562314 1.400000e-21 115.0
34 TraesCS5A01G508400 chr4D 100.000 36 0 0 3043 3078 493757228 493757263 3.980000e-07 67.6
35 TraesCS5A01G508400 chr5B 94.473 959 53 0 3141 4099 84939708 84938750 0.000000e+00 1478.0
36 TraesCS5A01G508400 chr5B 94.154 958 53 2 3142 4099 255228225 255229179 0.000000e+00 1456.0
37 TraesCS5A01G508400 chr5B 93.902 82 3 2 3076 3155 84939823 84939742 8.380000e-24 122.0
38 TraesCS5A01G508400 chr5B 95.652 69 3 0 4983 5051 615140168 615140100 1.810000e-20 111.0
39 TraesCS5A01G508400 chr5B 72.543 346 76 15 4299 4629 531642842 531643183 1.830000e-15 95.3
40 TraesCS5A01G508400 chr6B 93.730 957 60 0 3143 4099 156406647 156405691 0.000000e+00 1435.0
41 TraesCS5A01G508400 chr6B 88.496 339 35 3 5761 6097 36374291 36373955 2.070000e-109 407.0
42 TraesCS5A01G508400 chr6B 93.548 93 1 4 3068 3155 204172259 204172167 3.870000e-27 134.0
43 TraesCS5A01G508400 chr6B 94.444 72 3 1 4983 5054 50710111 50710041 6.520000e-20 110.0
44 TraesCS5A01G508400 chr6B 94.444 72 2 2 4983 5053 551033921 551033991 6.520000e-20 110.0
45 TraesCS5A01G508400 chr1B 93.319 958 59 2 3142 4099 592372079 592373031 0.000000e+00 1410.0
46 TraesCS5A01G508400 chr1B 86.207 58 4 4 2848 2903 572526647 572526702 6.660000e-05 60.2
47 TraesCS5A01G508400 chrUn 92.797 958 69 0 3142 4099 60377610 60376653 0.000000e+00 1387.0
48 TraesCS5A01G508400 chrUn 93.902 82 3 2 3076 3155 60377726 60377645 8.380000e-24 122.0
49 TraesCS5A01G508400 chrUn 95.714 70 2 1 4982 5051 377047402 377047334 1.810000e-20 111.0
50 TraesCS5A01G508400 chr1A 92.678 956 70 0 3142 4097 300566563 300565608 0.000000e+00 1378.0
51 TraesCS5A01G508400 chr1A 77.054 353 36 22 5765 6090 223456373 223456039 1.780000e-35 161.0
52 TraesCS5A01G508400 chr2D 92.777 886 63 1 3142 4027 310298021 310297137 0.000000e+00 1280.0
53 TraesCS5A01G508400 chr2D 93.902 82 3 2 3076 3155 310298137 310298056 8.380000e-24 122.0
54 TraesCS5A01G508400 chr7A 92.221 887 66 3 3142 4027 374561501 374562385 0.000000e+00 1253.0
55 TraesCS5A01G508400 chr7A 97.101 69 1 1 4983 5051 287635401 287635334 1.400000e-21 115.0
56 TraesCS5A01G508400 chr7A 93.243 74 4 1 4983 5056 735447779 735447851 2.350000e-19 108.0
57 TraesCS5A01G508400 chr6D 93.893 393 17 5 5764 6155 91035841 91035455 2.470000e-163 586.0
58 TraesCS5A01G508400 chr7B 79.954 434 49 27 3075 3475 89654067 89653639 1.010000e-72 285.0
59 TraesCS5A01G508400 chr7B 81.493 335 50 7 5764 6097 373115667 373115990 1.320000e-66 265.0
60 TraesCS5A01G508400 chr7B 92.941 85 6 0 5510 5594 509514032 509514116 2.330000e-24 124.0
61 TraesCS5A01G508400 chr2B 80.495 323 49 11 5765 6080 775470112 775469797 1.030000e-57 235.0
62 TraesCS5A01G508400 chr2B 94.048 84 3 2 3076 3157 503939051 503939134 6.480000e-25 126.0
63 TraesCS5A01G508400 chr3A 95.122 82 2 2 3073 3152 709776809 709776890 1.800000e-25 128.0
64 TraesCS5A01G508400 chr7D 93.023 86 6 0 5510 5595 470204875 470204790 6.480000e-25 126.0
65 TraesCS5A01G508400 chr3D 92.941 85 6 0 5510 5594 27936571 27936655 2.330000e-24 124.0
66 TraesCS5A01G508400 chr4A 88.235 102 9 3 5494 5594 738033369 738033468 1.080000e-22 119.0
67 TraesCS5A01G508400 chr2A 95.714 70 2 1 4983 5052 560773469 560773537 1.810000e-20 111.0
68 TraesCS5A01G508400 chr2A 85.981 107 8 6 3071 3175 9949326 9949225 2.350000e-19 108.0
69 TraesCS5A01G508400 chr1D 95.714 70 2 1 4982 5051 23994606 23994538 1.810000e-20 111.0
70 TraesCS5A01G508400 chr5D 73.946 261 54 11 4299 4547 437808984 437808726 6.570000e-15 93.5
71 TraesCS5A01G508400 chr5D 72.697 304 65 15 4249 4538 437696027 437696326 1.100000e-12 86.1
72 TraesCS5A01G508400 chr6A 97.297 37 0 1 2870 2905 26722853 26722889 1.850000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G508400 chr5A 672821799 672827953 6154 True 11367.000000 11367 100.000000 1 6155 1 chr5A.!!$R1 6154
1 TraesCS5A01G508400 chr5A 577920110 577921068 958 False 1327.000000 1327 91.658000 3142 4099 1 chr5A.!!$F4 957
2 TraesCS5A01G508400 chr5A 672507913 672510213 2300 True 431.366667 797 88.453667 914 5736 3 chr5A.!!$R2 4822
3 TraesCS5A01G508400 chr4B 631527606 631532250 4644 True 1381.000000 4176 92.646000 1 5762 5 chr4B.!!$R2 5761
4 TraesCS5A01G508400 chr4B 631070515 631072770 2255 False 404.500000 784 85.623500 972 5736 4 chr4B.!!$F1 4764
5 TraesCS5A01G508400 chr4D 493736582 493739875 3293 False 1242.000000 2098 96.448667 1 2291 3 chr4D.!!$F2 2290
6 TraesCS5A01G508400 chr4D 493753934 493759252 5318 False 920.720000 1733 97.246800 2287 6155 5 chr4D.!!$F3 3868
7 TraesCS5A01G508400 chr4D 492814257 492815934 1677 True 657.000000 802 83.034500 462 4859 2 chr4D.!!$R2 4397
8 TraesCS5A01G508400 chr4D 491948314 491951535 3221 True 632.333333 1271 90.846667 1580 5762 6 chr4D.!!$R1 4182
9 TraesCS5A01G508400 chr5B 255228225 255229179 954 False 1456.000000 1456 94.154000 3142 4099 1 chr5B.!!$F1 957
10 TraesCS5A01G508400 chr5B 84938750 84939823 1073 True 800.000000 1478 94.187500 3076 4099 2 chr5B.!!$R2 1023
11 TraesCS5A01G508400 chr6B 156405691 156406647 956 True 1435.000000 1435 93.730000 3143 4099 1 chr6B.!!$R3 956
12 TraesCS5A01G508400 chr1B 592372079 592373031 952 False 1410.000000 1410 93.319000 3142 4099 1 chr1B.!!$F2 957
13 TraesCS5A01G508400 chrUn 60376653 60377726 1073 True 754.500000 1387 93.349500 3076 4099 2 chrUn.!!$R2 1023
14 TraesCS5A01G508400 chr1A 300565608 300566563 955 True 1378.000000 1378 92.678000 3142 4097 1 chr1A.!!$R2 955
15 TraesCS5A01G508400 chr2D 310297137 310298137 1000 True 701.000000 1280 93.339500 3076 4027 2 chr2D.!!$R1 951
16 TraesCS5A01G508400 chr7A 374561501 374562385 884 False 1253.000000 1253 92.221000 3142 4027 1 chr7A.!!$F1 885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
817 1949 1.069227 GTTGAGGCGTTTGATGTCACC 60.069 52.381 0.0 0.0 0.00 4.02 F
1549 2728 2.029073 CTCGACGGTTGGTGCTGT 59.971 61.111 0.0 0.0 0.00 4.40 F
3339 7239 0.309302 CAACACGACGGGCAATGAAA 59.691 50.000 0.0 0.0 0.00 2.69 F
3436 7336 0.531974 CCGATAATCACCACCACCGG 60.532 60.000 0.0 0.0 0.00 5.28 F
3620 7521 0.543174 AGAGACGAGTGGAAAGGCCT 60.543 55.000 0.0 0.0 37.63 5.19 F
4197 8104 0.607489 AGGAGTGCCAACTGACATGC 60.607 55.000 0.0 0.0 36.52 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 3233 0.929244 ACCCAATCCAAGCCTAGCAT 59.071 50.0 0.0 0.0 0.0 3.79 R
3421 7321 0.322322 GTGTCCGGTGGTGGTGATTA 59.678 55.0 0.0 0.0 0.0 1.75 R
4986 8935 0.175760 GACTCGCCAAGCCTATCACA 59.824 55.0 0.0 0.0 0.0 3.58 R
4987 8936 0.175760 TGACTCGCCAAGCCTATCAC 59.824 55.0 0.0 0.0 0.0 3.06 R
4990 8939 0.460284 CGTTGACTCGCCAAGCCTAT 60.460 55.0 0.0 0.0 0.0 2.57 R
5870 10436 0.386476 TCGTGCCGTTAGTGTCAAGT 59.614 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.910580 GCCCCTTCTTCATCACCGGA 61.911 60.000 9.46 0.00 0.00 5.14
84 85 3.314331 CTCCTCTGCCACCACGGT 61.314 66.667 0.00 0.00 36.97 4.83
157 158 2.159310 CGTTCAAAGCAAGGGTTGTTCA 60.159 45.455 0.00 0.00 0.00 3.18
188 189 6.116126 TCTCTTAACTTACGAGGTACCTACC 58.884 44.000 16.29 1.90 46.82 3.18
199 200 2.317973 GGTACCTACCCATCTCCACTC 58.682 57.143 4.06 0.00 40.53 3.51
292 294 6.391537 TGTATACGTGAAGTGCATTGACTAA 58.608 36.000 0.00 0.00 0.00 2.24
306 308 6.366604 TGCATTGACTAACTGCATTGAATTTG 59.633 34.615 0.00 0.00 40.75 2.32
307 309 6.587226 GCATTGACTAACTGCATTGAATTTGA 59.413 34.615 0.00 0.00 35.96 2.69
308 310 7.201410 GCATTGACTAACTGCATTGAATTTGAG 60.201 37.037 0.00 0.00 35.96 3.02
310 312 7.509141 TGACTAACTGCATTGAATTTGAGAA 57.491 32.000 0.00 0.00 0.00 2.87
311 313 7.587629 TGACTAACTGCATTGAATTTGAGAAG 58.412 34.615 0.00 0.00 0.00 2.85
312 314 7.229306 TGACTAACTGCATTGAATTTGAGAAGT 59.771 33.333 0.00 0.00 0.00 3.01
313 315 7.588512 ACTAACTGCATTGAATTTGAGAAGTC 58.411 34.615 0.00 0.00 0.00 3.01
320 324 7.811236 TGCATTGAATTTGAGAAGTCTTTGATC 59.189 33.333 0.00 0.00 31.42 2.92
355 359 2.387952 TTCCAAGAGAAGAGGGGCC 58.612 57.895 0.00 0.00 0.00 5.80
392 410 2.092646 AGGCAACAACAGGTCAACAGTA 60.093 45.455 0.00 0.00 41.41 2.74
621 677 1.151899 ACCCCCTACACTCCTGCAA 60.152 57.895 0.00 0.00 0.00 4.08
817 1949 1.069227 GTTGAGGCGTTTGATGTCACC 60.069 52.381 0.00 0.00 0.00 4.02
881 2013 6.071447 TCGATTCATCACATTTGGGATTTTGT 60.071 34.615 0.00 0.00 35.67 2.83
920 2094 6.552445 ATTTTCAGATACCTGCTAGTGTCT 57.448 37.500 1.15 1.15 38.60 3.41
985 2159 4.392754 GGCATTTGGATTGTTTCATTGACC 59.607 41.667 0.00 0.00 0.00 4.02
1126 2301 6.496565 TCTTCATCCTTTTATTTCCCTGCAAA 59.503 34.615 0.00 0.00 0.00 3.68
1184 2359 6.041523 ACAATTGCTTACCAGTACCATGTTTT 59.958 34.615 5.05 0.00 0.00 2.43
1534 2713 7.939782 TCAGATTCTGAGATCACTGATAACTC 58.060 38.462 12.38 0.00 35.39 3.01
1549 2728 2.029073 CTCGACGGTTGGTGCTGT 59.971 61.111 0.00 0.00 0.00 4.40
1664 2844 4.393062 CAGTAATCGAGTTGTCATTGGCTT 59.607 41.667 0.00 0.00 0.00 4.35
1720 2900 2.436469 TGAACATCAGGCGCGCAT 60.436 55.556 34.42 26.01 0.00 4.73
1826 3006 3.325870 TCGACTCAGGCATGTTAAAGTG 58.674 45.455 0.00 0.00 0.00 3.16
1868 3048 2.554142 CAATGCAAGCGATGGAGTCTA 58.446 47.619 0.00 0.00 30.55 2.59
2123 3306 1.546029 GAATGAACCTCCAAAGTGGCC 59.454 52.381 0.00 0.00 37.47 5.36
2127 3310 1.760029 GAACCTCCAAAGTGGCCAAAA 59.240 47.619 7.24 0.00 37.47 2.44
2314 3557 3.565307 TGAATCTTCTGTTTTGGGTGCT 58.435 40.909 0.00 0.00 0.00 4.40
2326 3569 6.879400 TGTTTTGGGTGCTAAACTGTATTTT 58.121 32.000 0.00 0.00 35.73 1.82
2329 3572 8.354426 GTTTTGGGTGCTAAACTGTATTTTAGA 58.646 33.333 6.78 0.00 40.24 2.10
2637 3889 4.530946 TGTAACCTACTTCCTCCTTTCTGG 59.469 45.833 0.00 0.00 37.10 3.86
2738 3990 4.374399 ACAACGTGTAGGGTTGAAAGTAG 58.626 43.478 11.21 0.00 45.85 2.57
2811 4063 4.009675 CTGGCATGCTGAAAGGTTAGTTA 58.990 43.478 18.92 0.00 0.00 2.24
3066 6916 1.674322 CGTGATGGTTGTCCCCCAC 60.674 63.158 0.00 0.00 34.07 4.61
3067 6917 1.304134 GTGATGGTTGTCCCCCACC 60.304 63.158 0.00 0.00 34.07 4.61
3068 6918 1.465188 TGATGGTTGTCCCCCACCT 60.465 57.895 0.00 0.00 34.07 4.00
3069 6919 1.000896 GATGGTTGTCCCCCACCTG 60.001 63.158 0.00 0.00 34.07 4.00
3070 6920 3.224007 ATGGTTGTCCCCCACCTGC 62.224 63.158 0.00 0.00 34.07 4.85
3071 6921 3.580319 GGTTGTCCCCCACCTGCT 61.580 66.667 0.00 0.00 0.00 4.24
3072 6922 2.228480 GGTTGTCCCCCACCTGCTA 61.228 63.158 0.00 0.00 0.00 3.49
3073 6923 1.571773 GGTTGTCCCCCACCTGCTAT 61.572 60.000 0.00 0.00 0.00 2.97
3074 6924 0.394352 GTTGTCCCCCACCTGCTATG 60.394 60.000 0.00 0.00 0.00 2.23
3339 7239 0.309302 CAACACGACGGGCAATGAAA 59.691 50.000 0.00 0.00 0.00 2.69
3421 7321 2.360726 GTTTTCACCCCGGCCGAT 60.361 61.111 30.73 9.03 0.00 4.18
3436 7336 0.531974 CCGATAATCACCACCACCGG 60.532 60.000 0.00 0.00 0.00 5.28
3439 7339 1.208535 GATAATCACCACCACCGGACA 59.791 52.381 9.46 0.00 0.00 4.02
3482 7382 4.344865 ACACGGCCATGGTCACCC 62.345 66.667 18.31 6.60 0.00 4.61
3620 7521 0.543174 AGAGACGAGTGGAAAGGCCT 60.543 55.000 0.00 0.00 37.63 5.19
4007 7914 3.640407 ATGAGCCACCACCACGCT 61.640 61.111 0.00 0.00 34.97 5.07
4197 8104 0.607489 AGGAGTGCCAACTGACATGC 60.607 55.000 0.00 0.00 36.52 4.06
4999 8948 5.913137 TTTTTGGTATGTGATAGGCTTGG 57.087 39.130 0.00 0.00 0.00 3.61
5000 8949 2.638480 TGGTATGTGATAGGCTTGGC 57.362 50.000 0.00 0.00 0.00 4.52
5001 8950 1.202639 TGGTATGTGATAGGCTTGGCG 60.203 52.381 0.00 0.00 0.00 5.69
5002 8951 1.070134 GGTATGTGATAGGCTTGGCGA 59.930 52.381 0.00 0.00 0.00 5.54
5003 8952 2.408050 GTATGTGATAGGCTTGGCGAG 58.592 52.381 0.00 0.00 0.00 5.03
5004 8953 0.833287 ATGTGATAGGCTTGGCGAGT 59.167 50.000 3.19 0.00 0.00 4.18
5005 8954 0.175760 TGTGATAGGCTTGGCGAGTC 59.824 55.000 0.00 0.00 0.00 3.36
5006 8955 0.175760 GTGATAGGCTTGGCGAGTCA 59.824 55.000 9.42 0.00 30.26 3.41
5007 8956 0.901827 TGATAGGCTTGGCGAGTCAA 59.098 50.000 9.42 0.00 30.26 3.18
5008 8957 1.291132 GATAGGCTTGGCGAGTCAAC 58.709 55.000 9.42 0.00 30.26 3.18
5009 8958 0.460284 ATAGGCTTGGCGAGTCAACG 60.460 55.000 9.42 0.00 30.26 4.10
5010 8959 1.812686 TAGGCTTGGCGAGTCAACGT 61.813 55.000 9.42 0.00 35.59 3.99
5011 8960 1.373748 GGCTTGGCGAGTCAACGTA 60.374 57.895 0.26 0.00 35.59 3.57
5012 8961 0.947180 GGCTTGGCGAGTCAACGTAA 60.947 55.000 0.26 0.00 35.59 3.18
5013 8962 0.863144 GCTTGGCGAGTCAACGTAAA 59.137 50.000 3.19 0.00 35.59 2.01
5014 8963 1.262151 GCTTGGCGAGTCAACGTAAAA 59.738 47.619 3.19 0.00 35.59 1.52
5015 8964 2.286536 GCTTGGCGAGTCAACGTAAAAA 60.287 45.455 3.19 0.00 35.59 1.94
5016 8965 3.285745 CTTGGCGAGTCAACGTAAAAAC 58.714 45.455 0.00 0.00 35.59 2.43
5017 8966 2.553086 TGGCGAGTCAACGTAAAAACT 58.447 42.857 0.00 0.00 35.59 2.66
5018 8967 2.540931 TGGCGAGTCAACGTAAAAACTC 59.459 45.455 0.00 0.00 35.81 3.01
5019 8968 2.540931 GGCGAGTCAACGTAAAAACTCA 59.459 45.455 15.43 0.00 38.41 3.41
5020 8969 3.362693 GGCGAGTCAACGTAAAAACTCAG 60.363 47.826 15.43 10.85 38.41 3.35
5021 8970 3.784488 CGAGTCAACGTAAAAACTCAGC 58.216 45.455 15.43 0.00 38.41 4.26
5022 8971 3.362693 CGAGTCAACGTAAAAACTCAGCC 60.363 47.826 15.43 0.00 38.41 4.85
5023 8972 3.537580 AGTCAACGTAAAAACTCAGCCA 58.462 40.909 0.00 0.00 0.00 4.75
5024 8973 3.311596 AGTCAACGTAAAAACTCAGCCAC 59.688 43.478 0.00 0.00 0.00 5.01
5025 8974 3.311596 GTCAACGTAAAAACTCAGCCACT 59.688 43.478 0.00 0.00 0.00 4.00
5026 8975 3.558418 TCAACGTAAAAACTCAGCCACTC 59.442 43.478 0.00 0.00 0.00 3.51
5027 8976 3.470645 ACGTAAAAACTCAGCCACTCT 57.529 42.857 0.00 0.00 0.00 3.24
5028 8977 3.805207 ACGTAAAAACTCAGCCACTCTT 58.195 40.909 0.00 0.00 0.00 2.85
5029 8978 4.952460 ACGTAAAAACTCAGCCACTCTTA 58.048 39.130 0.00 0.00 0.00 2.10
5030 8979 5.548406 ACGTAAAAACTCAGCCACTCTTAT 58.452 37.500 0.00 0.00 0.00 1.73
5031 8980 5.408604 ACGTAAAAACTCAGCCACTCTTATG 59.591 40.000 0.00 0.00 0.00 1.90
5032 8981 5.163854 CGTAAAAACTCAGCCACTCTTATGG 60.164 44.000 0.00 0.00 43.26 2.74
5033 8982 4.640771 AAAACTCAGCCACTCTTATGGA 57.359 40.909 0.00 0.00 43.02 3.41
5034 8983 3.902881 AACTCAGCCACTCTTATGGAG 57.097 47.619 0.00 0.00 43.02 3.86
5035 8984 3.107402 ACTCAGCCACTCTTATGGAGA 57.893 47.619 0.00 0.00 44.45 3.71
5036 8985 3.652055 ACTCAGCCACTCTTATGGAGAT 58.348 45.455 0.00 0.00 44.45 2.75
5037 8986 3.387374 ACTCAGCCACTCTTATGGAGATG 59.613 47.826 0.00 0.00 44.45 2.90
5038 8987 3.640498 CTCAGCCACTCTTATGGAGATGA 59.360 47.826 0.00 0.00 44.45 2.92
5039 8988 4.033009 TCAGCCACTCTTATGGAGATGAA 58.967 43.478 0.00 0.00 44.45 2.57
5040 8989 4.471025 TCAGCCACTCTTATGGAGATGAAA 59.529 41.667 0.00 0.00 44.45 2.69
5041 8990 4.574013 CAGCCACTCTTATGGAGATGAAAC 59.426 45.833 0.00 0.00 44.45 2.78
5042 8991 3.879892 GCCACTCTTATGGAGATGAAACC 59.120 47.826 0.00 0.00 44.45 3.27
5043 8992 4.122776 CCACTCTTATGGAGATGAAACCG 58.877 47.826 4.83 0.00 44.45 4.44
5044 8993 4.141937 CCACTCTTATGGAGATGAAACCGA 60.142 45.833 4.83 0.00 44.45 4.69
5045 8994 5.419542 CACTCTTATGGAGATGAAACCGAA 58.580 41.667 4.83 0.00 44.45 4.30
5046 8995 5.874810 CACTCTTATGGAGATGAAACCGAAA 59.125 40.000 4.83 0.00 44.45 3.46
5047 8996 6.371548 CACTCTTATGGAGATGAAACCGAAAA 59.628 38.462 4.83 0.00 44.45 2.29
5048 8997 6.595716 ACTCTTATGGAGATGAAACCGAAAAG 59.404 38.462 4.83 0.00 44.45 2.27
5049 8998 6.707290 TCTTATGGAGATGAAACCGAAAAGA 58.293 36.000 0.00 0.00 0.00 2.52
5050 8999 7.338710 TCTTATGGAGATGAAACCGAAAAGAT 58.661 34.615 0.00 0.00 0.00 2.40
5051 9000 7.495934 TCTTATGGAGATGAAACCGAAAAGATC 59.504 37.037 0.00 0.00 0.00 2.75
5052 9001 4.905429 TGGAGATGAAACCGAAAAGATCA 58.095 39.130 0.00 0.00 0.00 2.92
5053 9002 5.500234 TGGAGATGAAACCGAAAAGATCAT 58.500 37.500 0.00 0.00 0.00 2.45
5277 9231 6.995686 TGTCATAGTGTAATGTTCAGGTTTGT 59.004 34.615 0.00 0.00 0.00 2.83
5345 9302 0.027063 GTGTTCCAACAACGTCCACG 59.973 55.000 0.00 0.00 41.21 4.94
5388 9347 6.147437 TCCTTACCATCCCAACATTACTTT 57.853 37.500 0.00 0.00 0.00 2.66
5389 9348 6.557568 TCCTTACCATCCCAACATTACTTTT 58.442 36.000 0.00 0.00 0.00 2.27
5390 9349 7.013834 TCCTTACCATCCCAACATTACTTTTT 58.986 34.615 0.00 0.00 0.00 1.94
5464 9449 2.781923 CCCACACAGTTGACATGATGA 58.218 47.619 0.00 0.00 0.00 2.92
5596 9581 7.909485 ATATTTCTTTACGGAGGGAGTAGAA 57.091 36.000 0.00 0.00 0.00 2.10
5727 10292 9.300681 TGAAGGAACAATATCTGAAATTTGAGT 57.699 29.630 4.52 0.00 0.00 3.41
5788 10354 9.781633 CTATCTAGTCTAGTTACTAAGCTTCCA 57.218 37.037 0.00 0.00 31.72 3.53
5793 10359 7.947282 AGTCTAGTTACTAAGCTTCCATGATC 58.053 38.462 0.00 0.00 0.00 2.92
5803 10369 2.028203 GCTTCCATGATCTCCTAGCCTC 60.028 54.545 0.00 0.00 0.00 4.70
5857 10423 2.159435 GGCCCGTTTGTCAATGTGTATC 60.159 50.000 0.00 0.00 0.00 2.24
5869 10435 6.206634 TGTCAATGTGTATCTCCTTTTTGTCC 59.793 38.462 0.00 0.00 0.00 4.02
5870 10436 6.206634 GTCAATGTGTATCTCCTTTTTGTCCA 59.793 38.462 0.00 0.00 0.00 4.02
5902 10468 1.663702 GCACGACGTGTAGCCTTGT 60.664 57.895 27.32 0.00 35.75 3.16
5934 10500 2.744202 GCCACTATACCATATGCTGCAC 59.256 50.000 3.57 0.00 0.00 4.57
5990 10556 6.855996 GCAACGCTTAATGCTACAATTAATG 58.144 36.000 0.00 0.00 39.46 1.90
6055 10621 3.292460 CCAATTTATAAACCGGCCAGGA 58.708 45.455 18.74 0.00 45.00 3.86
6078 10644 2.450476 GATGCCTCACCAGACCAAAAT 58.550 47.619 0.00 0.00 0.00 1.82
6082 10648 3.153919 GCCTCACCAGACCAAAATGTTA 58.846 45.455 0.00 0.00 0.00 2.41
6132 10698 4.918810 AACTTTTGCATCTTCGAGGTTT 57.081 36.364 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.974989 GGTCCGGGCGTCAACGTT 62.975 66.667 0.00 0.00 42.22 3.99
84 85 1.070786 GAGGAACAACGCACCCTGA 59.929 57.895 0.00 0.00 0.00 3.86
157 158 9.583765 GTACCTCGTAAGTTAAGAGATCAAAAT 57.416 33.333 22.68 6.02 36.57 1.82
199 200 6.907212 CGATCCCGAAGATTTTTACTCAAATG 59.093 38.462 0.00 0.00 34.42 2.32
283 285 8.024865 TCTCAAATTCAATGCAGTTAGTCAATG 58.975 33.333 0.00 0.00 0.00 2.82
292 294 6.645790 AAGACTTCTCAAATTCAATGCAGT 57.354 33.333 0.00 0.00 0.00 4.40
313 315 7.783090 AGTACTGCACATATCTTGATCAAAG 57.217 36.000 9.88 3.19 37.22 2.77
320 324 6.108687 TCTTGGAAGTACTGCACATATCTTG 58.891 40.000 2.51 0.00 0.00 3.02
364 368 1.321474 CCTGTTGTTGCCTGACATGT 58.679 50.000 0.00 0.00 0.00 3.21
417 435 4.641989 CAGCTAGCCAAATCACTTATTGGT 59.358 41.667 12.13 0.00 46.29 3.67
516 571 4.991056 TCTAGTGACTGTGATTTTGCTGTC 59.009 41.667 0.00 0.00 35.20 3.51
621 677 2.435586 GATCACGCACTGCAGGCT 60.436 61.111 19.93 2.63 0.00 4.58
817 1949 4.788521 GCTGTGTACAGAAAAAGAAACCCG 60.789 45.833 15.78 0.00 46.59 5.28
1184 2359 7.017254 GGATGGATGGGTCCTAGTTAATTAAGA 59.983 40.741 0.00 0.00 45.32 2.10
1301 2479 2.524306 AGGGAGACAACACTCTCTGAG 58.476 52.381 0.00 0.00 44.81 3.35
1534 2713 1.885388 TTGACAGCACCAACCGTCG 60.885 57.895 0.00 0.00 0.00 5.12
1549 2728 5.992217 GCAAGGAAAAGTAGAGAGAAGTTGA 59.008 40.000 0.00 0.00 0.00 3.18
1664 2844 6.707440 ACTTGAAATCACAATGGTGTAACA 57.293 33.333 0.00 0.00 45.45 2.41
1720 2900 2.136298 TGTGCTTCCTGAAAACCACA 57.864 45.000 0.00 0.00 0.00 4.17
1826 3006 3.848726 CCAATTACTGTCCCATTTGTGC 58.151 45.455 0.00 0.00 0.00 4.57
1850 3030 2.366590 TCATAGACTCCATCGCTTGCAT 59.633 45.455 0.00 0.00 0.00 3.96
1971 3152 7.734865 TCTCAACTGATAATCCAGTGGGTATAT 59.265 37.037 9.92 5.70 45.82 0.86
1972 3153 7.073208 TCTCAACTGATAATCCAGTGGGTATA 58.927 38.462 9.92 0.54 45.82 1.47
2050 3233 0.929244 ACCCAATCCAAGCCTAGCAT 59.071 50.000 0.00 0.00 0.00 3.79
2123 3306 5.751680 CACTGGTGTGAACATAGTCTTTTG 58.248 41.667 0.00 0.00 46.55 2.44
2177 3360 5.479124 AGAAATACCAACCTAACTGTCGT 57.521 39.130 0.00 0.00 0.00 4.34
2738 3990 5.472137 TCTTTTATACCAGCAACCACTTGAC 59.528 40.000 0.00 0.00 0.00 3.18
3066 6916 3.181500 GCCTTTTTCGGTAACATAGCAGG 60.181 47.826 0.00 0.00 0.00 4.85
3067 6917 3.689649 AGCCTTTTTCGGTAACATAGCAG 59.310 43.478 0.00 0.00 0.00 4.24
3068 6918 3.681593 AGCCTTTTTCGGTAACATAGCA 58.318 40.909 0.00 0.00 0.00 3.49
3069 6919 4.696899 AAGCCTTTTTCGGTAACATAGC 57.303 40.909 0.00 0.00 0.00 2.97
3070 6920 5.321516 CGAAAGCCTTTTTCGGTAACATAG 58.678 41.667 12.72 0.00 45.17 2.23
3071 6921 5.285798 CGAAAGCCTTTTTCGGTAACATA 57.714 39.130 12.72 0.00 45.17 2.29
3072 6922 4.155310 CGAAAGCCTTTTTCGGTAACAT 57.845 40.909 12.72 0.00 45.17 2.71
3073 6923 3.612472 CGAAAGCCTTTTTCGGTAACA 57.388 42.857 12.72 0.00 45.17 2.41
3158 7058 1.542547 CCGGTTGCTCTTGTAGTGGTT 60.543 52.381 0.00 0.00 0.00 3.67
3389 7289 4.495422 GTGAAAACCTGCTCTATCTTCGA 58.505 43.478 0.00 0.00 0.00 3.71
3421 7321 0.322322 GTGTCCGGTGGTGGTGATTA 59.678 55.000 0.00 0.00 0.00 1.75
3436 7336 4.572571 TTGCCGGGGTGTGGTGTC 62.573 66.667 2.18 0.00 0.00 3.67
3620 7521 2.342279 CAGGGGTGCGAAAGACGA 59.658 61.111 0.00 0.00 45.77 4.20
3656 7558 3.782443 CGGCCGGCCTCTTAGGTT 61.782 66.667 41.01 0.00 37.80 3.50
3804 7711 2.107953 GCTGCGGGACTGATCTCC 59.892 66.667 0.00 0.00 0.00 3.71
3874 7781 0.870307 CGTTCGGATGCTACCTTCGG 60.870 60.000 0.00 0.00 0.00 4.30
3885 7792 2.439701 TCTCCTCGGCGTTCGGAT 60.440 61.111 6.85 0.00 39.77 4.18
4099 8006 2.683742 GCCACCACATAACATAGCAGGT 60.684 50.000 0.00 0.00 0.00 4.00
4856 8766 6.207691 ACATGTGTTGGCAAAATATACCTC 57.792 37.500 0.00 0.00 0.00 3.85
4857 8767 6.603940 AACATGTGTTGGCAAAATATACCT 57.396 33.333 0.00 0.00 36.80 3.08
4858 8768 6.870965 TGAAACATGTGTTGGCAAAATATACC 59.129 34.615 0.00 0.00 38.44 2.73
4983 8932 2.224066 ACTCGCCAAGCCTATCACATAC 60.224 50.000 0.00 0.00 0.00 2.39
4984 8933 2.035961 GACTCGCCAAGCCTATCACATA 59.964 50.000 0.00 0.00 0.00 2.29
4985 8934 0.833287 ACTCGCCAAGCCTATCACAT 59.167 50.000 0.00 0.00 0.00 3.21
4986 8935 0.175760 GACTCGCCAAGCCTATCACA 59.824 55.000 0.00 0.00 0.00 3.58
4987 8936 0.175760 TGACTCGCCAAGCCTATCAC 59.824 55.000 0.00 0.00 0.00 3.06
4988 8937 0.901827 TTGACTCGCCAAGCCTATCA 59.098 50.000 0.00 0.00 0.00 2.15
4989 8938 1.291132 GTTGACTCGCCAAGCCTATC 58.709 55.000 0.00 0.00 0.00 2.08
4990 8939 0.460284 CGTTGACTCGCCAAGCCTAT 60.460 55.000 0.00 0.00 0.00 2.57
4991 8940 1.080093 CGTTGACTCGCCAAGCCTA 60.080 57.895 0.00 0.00 0.00 3.93
4992 8941 1.812686 TACGTTGACTCGCCAAGCCT 61.813 55.000 0.00 0.00 0.00 4.58
4993 8942 0.947180 TTACGTTGACTCGCCAAGCC 60.947 55.000 0.00 0.00 0.00 4.35
4994 8943 0.863144 TTTACGTTGACTCGCCAAGC 59.137 50.000 0.00 0.00 0.00 4.01
4995 8944 3.001939 AGTTTTTACGTTGACTCGCCAAG 59.998 43.478 0.00 0.00 0.00 3.61
4996 8945 2.937799 AGTTTTTACGTTGACTCGCCAA 59.062 40.909 0.00 0.00 0.00 4.52
4997 8946 2.540931 GAGTTTTTACGTTGACTCGCCA 59.459 45.455 0.00 0.00 30.45 5.69
4998 8947 2.540931 TGAGTTTTTACGTTGACTCGCC 59.459 45.455 0.00 0.00 41.00 5.54
4999 8948 3.784488 CTGAGTTTTTACGTTGACTCGC 58.216 45.455 0.00 0.00 41.00 5.03
5000 8949 3.362693 GGCTGAGTTTTTACGTTGACTCG 60.363 47.826 0.00 1.46 41.00 4.18
5001 8950 3.558418 TGGCTGAGTTTTTACGTTGACTC 59.442 43.478 0.00 3.36 39.11 3.36
5002 8951 3.311596 GTGGCTGAGTTTTTACGTTGACT 59.688 43.478 0.00 0.00 0.00 3.41
5003 8952 3.311596 AGTGGCTGAGTTTTTACGTTGAC 59.688 43.478 0.00 0.00 0.00 3.18
5004 8953 3.537580 AGTGGCTGAGTTTTTACGTTGA 58.462 40.909 0.00 0.00 0.00 3.18
5005 8954 3.560068 AGAGTGGCTGAGTTTTTACGTTG 59.440 43.478 0.00 0.00 0.00 4.10
5006 8955 3.805207 AGAGTGGCTGAGTTTTTACGTT 58.195 40.909 0.00 0.00 0.00 3.99
5007 8956 3.470645 AGAGTGGCTGAGTTTTTACGT 57.529 42.857 0.00 0.00 0.00 3.57
5008 8957 5.163854 CCATAAGAGTGGCTGAGTTTTTACG 60.164 44.000 0.00 0.00 31.43 3.18
5009 8958 5.938125 TCCATAAGAGTGGCTGAGTTTTTAC 59.062 40.000 0.00 0.00 39.19 2.01
5010 8959 6.013725 TCTCCATAAGAGTGGCTGAGTTTTTA 60.014 38.462 0.00 0.00 43.71 1.52
5011 8960 4.985538 TCCATAAGAGTGGCTGAGTTTTT 58.014 39.130 0.00 0.00 39.19 1.94
5012 8961 4.287067 TCTCCATAAGAGTGGCTGAGTTTT 59.713 41.667 0.00 0.00 43.71 2.43
5013 8962 3.840666 TCTCCATAAGAGTGGCTGAGTTT 59.159 43.478 0.00 0.00 43.71 2.66
5014 8963 3.445008 TCTCCATAAGAGTGGCTGAGTT 58.555 45.455 0.00 0.00 43.71 3.01
5015 8964 3.107402 TCTCCATAAGAGTGGCTGAGT 57.893 47.619 0.00 0.00 43.71 3.41
5016 8965 3.640498 TCATCTCCATAAGAGTGGCTGAG 59.360 47.826 0.00 0.00 43.71 3.35
5017 8966 3.646534 TCATCTCCATAAGAGTGGCTGA 58.353 45.455 0.00 0.00 43.71 4.26
5018 8967 4.412796 TTCATCTCCATAAGAGTGGCTG 57.587 45.455 0.00 0.00 43.71 4.85
5019 8968 4.384647 GGTTTCATCTCCATAAGAGTGGCT 60.385 45.833 0.00 0.00 43.71 4.75
5020 8969 3.879892 GGTTTCATCTCCATAAGAGTGGC 59.120 47.826 0.00 0.00 43.71 5.01
5021 8970 4.122776 CGGTTTCATCTCCATAAGAGTGG 58.877 47.826 0.00 0.00 43.71 4.00
5022 8971 5.011090 TCGGTTTCATCTCCATAAGAGTG 57.989 43.478 0.00 0.00 43.71 3.51
5023 8972 5.677319 TTCGGTTTCATCTCCATAAGAGT 57.323 39.130 0.00 0.00 43.71 3.24
5024 8973 6.818644 TCTTTTCGGTTTCATCTCCATAAGAG 59.181 38.462 0.00 0.00 44.75 2.85
5025 8974 6.707290 TCTTTTCGGTTTCATCTCCATAAGA 58.293 36.000 0.00 0.00 38.72 2.10
5026 8975 6.985188 TCTTTTCGGTTTCATCTCCATAAG 57.015 37.500 0.00 0.00 0.00 1.73
5027 8976 7.109501 TGATCTTTTCGGTTTCATCTCCATAA 58.890 34.615 0.00 0.00 0.00 1.90
5028 8977 6.649155 TGATCTTTTCGGTTTCATCTCCATA 58.351 36.000 0.00 0.00 0.00 2.74
5029 8978 5.500234 TGATCTTTTCGGTTTCATCTCCAT 58.500 37.500 0.00 0.00 0.00 3.41
5030 8979 4.905429 TGATCTTTTCGGTTTCATCTCCA 58.095 39.130 0.00 0.00 0.00 3.86
5031 8980 7.736447 ATATGATCTTTTCGGTTTCATCTCC 57.264 36.000 0.00 0.00 0.00 3.71
5204 9158 1.600957 TCGAAACGTCTCACGACTTCT 59.399 47.619 2.48 0.00 46.05 2.85
5258 9212 6.238648 GCTTACACAAACCTGAACATTACACT 60.239 38.462 0.00 0.00 0.00 3.55
5277 9231 4.397420 TCAGGCATCAAAAAGAGCTTACA 58.603 39.130 0.00 0.00 0.00 2.41
5345 9302 6.156748 AGGAGGTGAAAATTTGTAAACACC 57.843 37.500 16.60 16.60 45.25 4.16
5388 9347 7.595819 AGTAATGTTGGGATGTTCTCAAAAA 57.404 32.000 0.00 0.00 38.80 1.94
5389 9348 7.595819 AAGTAATGTTGGGATGTTCTCAAAA 57.404 32.000 0.00 0.00 38.80 2.44
5390 9349 7.393234 CCTAAGTAATGTTGGGATGTTCTCAAA 59.607 37.037 0.00 0.00 38.80 2.69
5391 9350 6.884295 CCTAAGTAATGTTGGGATGTTCTCAA 59.116 38.462 0.00 0.00 33.81 3.02
5392 9351 6.414732 CCTAAGTAATGTTGGGATGTTCTCA 58.585 40.000 0.00 0.00 29.52 3.27
5393 9352 5.823045 CCCTAAGTAATGTTGGGATGTTCTC 59.177 44.000 0.00 0.00 40.23 2.87
5394 9353 5.491078 TCCCTAAGTAATGTTGGGATGTTCT 59.509 40.000 0.00 0.00 41.57 3.01
5395 9354 5.751586 TCCCTAAGTAATGTTGGGATGTTC 58.248 41.667 0.00 0.00 41.57 3.18
5396 9355 5.789574 TCCCTAAGTAATGTTGGGATGTT 57.210 39.130 0.00 0.00 41.57 2.71
5464 9449 4.161001 GCCCAAATGAGGAAAAGTGATCAT 59.839 41.667 0.00 0.00 33.91 2.45
5566 9551 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
5596 9581 7.608761 GCTACTATATAGTCTCTACTGTTGGCT 59.391 40.741 18.68 0.00 37.73 4.75
5768 10334 7.782644 AGATCATGGAAGCTTAGTAACTAGACT 59.217 37.037 0.00 0.00 0.00 3.24
5769 10335 7.947282 AGATCATGGAAGCTTAGTAACTAGAC 58.053 38.462 0.00 0.00 0.00 2.59
5770 10336 7.231722 GGAGATCATGGAAGCTTAGTAACTAGA 59.768 40.741 0.00 0.00 0.00 2.43
5771 10337 7.232534 AGGAGATCATGGAAGCTTAGTAACTAG 59.767 40.741 0.00 0.00 0.00 2.57
5772 10338 7.069986 AGGAGATCATGGAAGCTTAGTAACTA 58.930 38.462 0.00 0.00 0.00 2.24
5785 10351 2.492381 CCAGAGGCTAGGAGATCATGGA 60.492 54.545 0.00 0.00 0.00 3.41
5788 10354 2.607499 CACCAGAGGCTAGGAGATCAT 58.393 52.381 12.03 0.00 0.00 2.45
5803 10369 2.601367 CAACCCCCAAGCCACCAG 60.601 66.667 0.00 0.00 0.00 4.00
5840 10406 5.862924 AAGGAGATACACATTGACAAACG 57.137 39.130 0.00 0.00 0.00 3.60
5869 10435 0.506932 CGTGCCGTTAGTGTCAAGTG 59.493 55.000 0.00 0.00 0.00 3.16
5870 10436 0.386476 TCGTGCCGTTAGTGTCAAGT 59.614 50.000 0.00 0.00 0.00 3.16
6055 10621 1.997874 GGTCTGGTGAGGCATCCCT 60.998 63.158 0.00 0.00 46.74 4.20
6101 10667 8.188139 TCGAAGATGCAAAAGTTAGTTCTTTTT 58.812 29.630 0.00 0.00 43.09 1.94
6132 10698 3.019799 TCTGTTGGTGGTGGCTTTTTA 57.980 42.857 0.00 0.00 0.00 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.