Multiple sequence alignment - TraesCS5A01G508300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G508300 chr5A 100.000 4637 0 0 1 4637 672817258 672812622 0.000000e+00 8564.0
1 TraesCS5A01G508300 chr7A 97.380 1756 36 5 1337 3091 611477786 611476040 0.000000e+00 2979.0
2 TraesCS5A01G508300 chr7A 96.877 1761 41 7 1337 3089 689468636 689466882 0.000000e+00 2935.0
3 TraesCS5A01G508300 chr7A 96.868 1756 49 5 1337 3090 725940352 725938601 0.000000e+00 2933.0
4 TraesCS5A01G508300 chr7A 96.642 1757 51 5 1339 3091 689475634 689473882 0.000000e+00 2911.0
5 TraesCS5A01G508300 chr7A 96.638 1755 47 4 1338 3091 611484769 611483026 0.000000e+00 2904.0
6 TraesCS5A01G508300 chr7A 96.479 1761 53 5 1330 3089 5070660 5072412 0.000000e+00 2900.0
7 TraesCS5A01G508300 chr7A 97.162 1339 37 1 1 1339 450569450 450568113 0.000000e+00 2261.0
8 TraesCS5A01G508300 chr7A 94.938 1126 35 5 3090 4205 450568118 450567005 0.000000e+00 1744.0
9 TraesCS5A01G508300 chr6A 97.210 1756 40 4 1337 3089 617443056 617444805 0.000000e+00 2963.0
10 TraesCS5A01G508300 chr6A 97.040 1757 51 1 1337 3092 573238272 573240028 0.000000e+00 2955.0
11 TraesCS5A01G508300 chr4A 96.920 1753 50 2 1338 3089 619358967 619357218 0.000000e+00 2935.0
12 TraesCS5A01G508300 chr6B 98.432 1339 20 1 1 1339 139443314 139444651 0.000000e+00 2355.0
13 TraesCS5A01G508300 chr6B 96.296 1134 28 5 3090 4211 139444646 139445777 0.000000e+00 1849.0
14 TraesCS5A01G508300 chrUn 97.909 1339 27 1 1 1339 75466583 75467920 0.000000e+00 2316.0
15 TraesCS5A01G508300 chrUn 95.246 1136 30 6 3090 4215 75467915 75469036 0.000000e+00 1777.0
16 TraesCS5A01G508300 chr3D 97.950 1317 26 1 22 1338 166288679 166289994 0.000000e+00 2281.0
17 TraesCS5A01G508300 chr3D 95.200 1125 32 5 3090 4204 166289990 166291102 0.000000e+00 1759.0
18 TraesCS5A01G508300 chr2D 97.461 1339 31 2 1 1339 121214600 121213265 0.000000e+00 2281.0
19 TraesCS5A01G508300 chr2D 93.652 1087 39 9 3090 4166 121213270 121212204 0.000000e+00 1598.0
20 TraesCS5A01G508300 chr6D 95.690 1137 29 6 3090 4213 59412485 59411356 0.000000e+00 1810.0
21 TraesCS5A01G508300 chr6D 97.073 820 14 7 524 1339 59413293 59412480 0.000000e+00 1373.0
22 TraesCS5A01G508300 chr1A 94.929 1124 35 7 3090 4203 42898373 42899484 0.000000e+00 1740.0
23 TraesCS5A01G508300 chr1A 96.040 606 19 2 694 1295 42887825 42888429 0.000000e+00 981.0
24 TraesCS5A01G508300 chr3B 97.409 772 18 2 1 772 62880981 62880212 0.000000e+00 1314.0
25 TraesCS5A01G508300 chr3B 96.863 542 15 2 3090 3629 62879682 62879141 0.000000e+00 905.0
26 TraesCS5A01G508300 chr3B 94.086 558 30 2 3090 3646 15664896 15664341 0.000000e+00 845.0
27 TraesCS5A01G508300 chr3B 95.679 486 12 3 3721 4206 62878225 62877749 0.000000e+00 773.0
28 TraesCS5A01G508300 chr3B 94.908 491 15 4 3721 4210 15741814 15741333 0.000000e+00 760.0
29 TraesCS5A01G508300 chr3B 78.102 137 12 12 3635 3760 62878261 62878132 2.310000e-08 71.3
30 TraesCS5A01G508300 chr7B 96.749 769 24 1 1 769 515068367 515069134 0.000000e+00 1280.0
31 TraesCS5A01G508300 chr7B 96.359 769 27 1 1 769 515048400 515049167 0.000000e+00 1264.0
32 TraesCS5A01G508300 chr7B 97.418 581 15 0 759 1339 515049126 515049706 0.000000e+00 990.0
33 TraesCS5A01G508300 chr7B 91.606 691 31 12 3090 3760 515049701 515050384 0.000000e+00 929.0
34 TraesCS5A01G508300 chr7B 91.172 691 34 13 3090 3760 515069668 515070351 0.000000e+00 913.0
35 TraesCS5A01G508300 chr1B 96.489 769 26 1 1 769 604789605 604790372 0.000000e+00 1269.0
36 TraesCS5A01G508300 chr1B 91.706 639 21 9 3090 3714 604790906 604791526 0.000000e+00 857.0
37 TraesCS5A01G508300 chr1B 91.111 45 3 1 4224 4268 321689997 321690040 5.010000e-05 60.2
38 TraesCS5A01G508300 chr1D 83.899 913 132 12 434 1339 122843418 122842514 0.000000e+00 857.0
39 TraesCS5A01G508300 chr2B 91.506 518 32 7 3692 4206 213956302 213956810 0.000000e+00 702.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G508300 chr5A 672812622 672817258 4636 True 8564.000 8564 100.000000 1 4637 1 chr5A.!!$R1 4636
1 TraesCS5A01G508300 chr7A 611476040 611477786 1746 True 2979.000 2979 97.380000 1337 3091 1 chr7A.!!$R1 1754
2 TraesCS5A01G508300 chr7A 689466882 689468636 1754 True 2935.000 2935 96.877000 1337 3089 1 chr7A.!!$R3 1752
3 TraesCS5A01G508300 chr7A 725938601 725940352 1751 True 2933.000 2933 96.868000 1337 3090 1 chr7A.!!$R5 1753
4 TraesCS5A01G508300 chr7A 689473882 689475634 1752 True 2911.000 2911 96.642000 1339 3091 1 chr7A.!!$R4 1752
5 TraesCS5A01G508300 chr7A 611483026 611484769 1743 True 2904.000 2904 96.638000 1338 3091 1 chr7A.!!$R2 1753
6 TraesCS5A01G508300 chr7A 5070660 5072412 1752 False 2900.000 2900 96.479000 1330 3089 1 chr7A.!!$F1 1759
7 TraesCS5A01G508300 chr7A 450567005 450569450 2445 True 2002.500 2261 96.050000 1 4205 2 chr7A.!!$R6 4204
8 TraesCS5A01G508300 chr6A 617443056 617444805 1749 False 2963.000 2963 97.210000 1337 3089 1 chr6A.!!$F2 1752
9 TraesCS5A01G508300 chr6A 573238272 573240028 1756 False 2955.000 2955 97.040000 1337 3092 1 chr6A.!!$F1 1755
10 TraesCS5A01G508300 chr4A 619357218 619358967 1749 True 2935.000 2935 96.920000 1338 3089 1 chr4A.!!$R1 1751
11 TraesCS5A01G508300 chr6B 139443314 139445777 2463 False 2102.000 2355 97.364000 1 4211 2 chr6B.!!$F1 4210
12 TraesCS5A01G508300 chrUn 75466583 75469036 2453 False 2046.500 2316 96.577500 1 4215 2 chrUn.!!$F1 4214
13 TraesCS5A01G508300 chr3D 166288679 166291102 2423 False 2020.000 2281 96.575000 22 4204 2 chr3D.!!$F1 4182
14 TraesCS5A01G508300 chr2D 121212204 121214600 2396 True 1939.500 2281 95.556500 1 4166 2 chr2D.!!$R1 4165
15 TraesCS5A01G508300 chr6D 59411356 59413293 1937 True 1591.500 1810 96.381500 524 4213 2 chr6D.!!$R1 3689
16 TraesCS5A01G508300 chr1A 42898373 42899484 1111 False 1740.000 1740 94.929000 3090 4203 1 chr1A.!!$F2 1113
17 TraesCS5A01G508300 chr1A 42887825 42888429 604 False 981.000 981 96.040000 694 1295 1 chr1A.!!$F1 601
18 TraesCS5A01G508300 chr3B 15664341 15664896 555 True 845.000 845 94.086000 3090 3646 1 chr3B.!!$R1 556
19 TraesCS5A01G508300 chr3B 62877749 62880981 3232 True 765.825 1314 92.013250 1 4206 4 chr3B.!!$R3 4205
20 TraesCS5A01G508300 chr7B 515068367 515070351 1984 False 1096.500 1280 93.960500 1 3760 2 chr7B.!!$F2 3759
21 TraesCS5A01G508300 chr7B 515048400 515050384 1984 False 1061.000 1264 95.127667 1 3760 3 chr7B.!!$F1 3759
22 TraesCS5A01G508300 chr1B 604789605 604791526 1921 False 1063.000 1269 94.097500 1 3714 2 chr1B.!!$F2 3713
23 TraesCS5A01G508300 chr1D 122842514 122843418 904 True 857.000 857 83.899000 434 1339 1 chr1D.!!$R1 905
24 TraesCS5A01G508300 chr2B 213956302 213956810 508 False 702.000 702 91.506000 3692 4206 1 chr2B.!!$F1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
753 820 3.642141 AGGTGGTGGTTGTCTCATTTTT 58.358 40.909 0.00 0.0 0.0 1.94 F
1600 1677 0.902531 CAAAGCTTCGGGGAGGAGTA 59.097 55.000 0.00 0.0 0.0 2.59 F
3304 3405 0.397564 TGCCAAGACATGTGCTGAGA 59.602 50.000 1.15 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 2523 1.504647 CCGACGATCGAATCTCGGGA 61.505 60.0 27.86 0.00 43.74 5.14 R
3309 3410 0.108281 GATCTGCAGCAGTCTCAGCA 60.108 55.0 22.10 0.88 35.43 4.41 R
4340 5357 0.039074 GACGTGTGTGTGAGAGGGAG 60.039 60.0 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
160 161 8.871125 CATAGGAAAATACTACCTAGTGGATGT 58.129 37.037 0.00 0.00 39.23 3.06
387 388 6.270463 TGACATAAAGGACCAGGTAACAAGTA 59.730 38.462 0.00 0.00 41.41 2.24
502 503 3.832527 ACACAACTTTGCAAGGGATAGT 58.167 40.909 13.65 4.15 0.00 2.12
753 820 3.642141 AGGTGGTGGTTGTCTCATTTTT 58.358 40.909 0.00 0.00 0.00 1.94
838 910 6.486253 TGATTGTCTTTTGTGTGATAGCTC 57.514 37.500 0.00 0.00 0.00 4.09
951 1023 7.627939 GCACTCTCATTCAGCATTTATTTGACT 60.628 37.037 0.00 0.00 0.00 3.41
952 1024 8.242053 CACTCTCATTCAGCATTTATTTGACTT 58.758 33.333 0.00 0.00 0.00 3.01
1600 1677 0.902531 CAAAGCTTCGGGGAGGAGTA 59.097 55.000 0.00 0.00 0.00 2.59
1607 1684 2.413142 CGGGGAGGAGTACCGTCAC 61.413 68.421 0.00 0.00 42.53 3.67
1655 1732 3.936203 AACCGTCGCAGGGCTTCA 61.936 61.111 1.26 0.00 35.02 3.02
1679 1756 3.543680 AAGCACCGCTACAATATGACT 57.456 42.857 0.00 0.00 38.25 3.41
1955 2041 1.628043 CCCCCTCCCTAGTCCAATTCA 60.628 57.143 0.00 0.00 0.00 2.57
2041 2135 1.850345 CTAAGGCCCAATACTTCCCCA 59.150 52.381 0.00 0.00 0.00 4.96
2100 2194 1.877443 CGAAATCACCCGGAACACTTT 59.123 47.619 0.73 0.00 0.00 2.66
2400 2494 3.985279 TCAGACCGCATAACAATATACGC 59.015 43.478 0.00 0.00 28.78 4.42
2429 2523 5.646360 CCCTTTGTCATCGGTATGTTACTTT 59.354 40.000 0.00 0.00 34.50 2.66
2657 2752 4.133820 CAACATGTACCTTTGGAGACACA 58.866 43.478 0.00 0.00 42.67 3.72
2681 2776 6.808321 TGTAGAGCACCTTTATAATCACCT 57.192 37.500 0.00 0.00 0.00 4.00
2756 2851 8.097038 GGGAGTTGCATAATCTCATAGTCATAA 58.903 37.037 0.00 0.00 0.00 1.90
2994 3091 9.454859 TGTATTCACACATGTATTATGTTTCCA 57.545 29.630 0.00 0.00 0.00 3.53
3107 3205 8.718102 TCCTTCAGTAACTTCTATACATTTGC 57.282 34.615 0.00 0.00 0.00 3.68
3108 3206 8.318412 TCCTTCAGTAACTTCTATACATTTGCA 58.682 33.333 0.00 0.00 0.00 4.08
3147 3248 5.854010 TTGTATGTAACAAAACAGGGCAA 57.146 34.783 0.00 0.00 45.11 4.52
3163 3264 5.163237 ACAGGGCAACAACTTTACTTCTCTA 60.163 40.000 0.00 0.00 39.74 2.43
3260 3361 6.505344 TGGGAAGCCATCTCTACCATATATTT 59.495 38.462 0.00 0.00 0.00 1.40
3304 3405 0.397564 TGCCAAGACATGTGCTGAGA 59.602 50.000 1.15 0.00 0.00 3.27
3305 3406 0.801251 GCCAAGACATGTGCTGAGAC 59.199 55.000 1.15 0.00 0.00 3.36
3306 3407 1.610102 GCCAAGACATGTGCTGAGACT 60.610 52.381 1.15 0.00 0.00 3.24
3307 3408 2.074576 CCAAGACATGTGCTGAGACTG 58.925 52.381 1.15 0.00 0.00 3.51
3308 3409 1.463831 CAAGACATGTGCTGAGACTGC 59.536 52.381 1.15 0.00 0.00 4.40
3309 3410 0.975135 AGACATGTGCTGAGACTGCT 59.025 50.000 1.15 0.00 0.00 4.24
3310 3411 1.077123 GACATGTGCTGAGACTGCTG 58.923 55.000 1.15 0.00 0.00 4.41
3311 3412 0.954449 ACATGTGCTGAGACTGCTGC 60.954 55.000 0.00 0.00 0.00 5.25
3312 3413 0.673956 CATGTGCTGAGACTGCTGCT 60.674 55.000 0.00 0.00 34.32 4.24
3313 3414 0.673956 ATGTGCTGAGACTGCTGCTG 60.674 55.000 4.89 4.89 34.32 4.41
3314 3415 1.005275 GTGCTGAGACTGCTGCTGA 60.005 57.895 13.69 0.00 34.32 4.26
3315 3416 1.015085 GTGCTGAGACTGCTGCTGAG 61.015 60.000 13.69 0.00 34.32 3.35
3374 3499 3.064931 CAGAAACGGTACCAAAGAGACC 58.935 50.000 13.54 0.00 0.00 3.85
3396 3521 4.126437 CACGAACAGGTGATGCCATTATA 58.874 43.478 0.00 0.00 40.38 0.98
4106 5123 7.231317 AGCCAATTCGATATACATCCAAACAAT 59.769 33.333 0.00 0.00 0.00 2.71
4178 5195 7.122715 TGAAACCAATACAATACATAGGCCTT 58.877 34.615 12.58 0.00 0.00 4.35
4207 5224 3.064207 GACATCCAAACACAGCGTTAGA 58.936 45.455 0.00 0.00 36.59 2.10
4215 5232 5.049405 CCAAACACAGCGTTAGAGAATTCTT 60.049 40.000 9.87 2.63 36.59 2.52
4216 5233 6.430451 CAAACACAGCGTTAGAGAATTCTTT 58.570 36.000 9.87 6.57 36.59 2.52
4217 5234 5.847670 ACACAGCGTTAGAGAATTCTTTC 57.152 39.130 9.87 0.00 34.79 2.62
4218 5235 5.542779 ACACAGCGTTAGAGAATTCTTTCT 58.457 37.500 9.87 5.95 44.99 2.52
4219 5236 6.688578 ACACAGCGTTAGAGAATTCTTTCTA 58.311 36.000 9.87 4.92 42.34 2.10
4220 5237 6.586844 ACACAGCGTTAGAGAATTCTTTCTAC 59.413 38.462 9.87 5.42 42.34 2.59
4221 5238 6.586463 CACAGCGTTAGAGAATTCTTTCTACA 59.414 38.462 9.87 0.00 42.34 2.74
4222 5239 7.116376 CACAGCGTTAGAGAATTCTTTCTACAA 59.884 37.037 9.87 0.00 42.34 2.41
4223 5240 7.656137 ACAGCGTTAGAGAATTCTTTCTACAAA 59.344 33.333 9.87 0.00 42.34 2.83
4224 5241 8.165428 CAGCGTTAGAGAATTCTTTCTACAAAG 58.835 37.037 9.87 0.00 42.34 2.77
4225 5242 8.088981 AGCGTTAGAGAATTCTTTCTACAAAGA 58.911 33.333 9.87 0.00 45.30 2.52
4226 5243 8.163516 GCGTTAGAGAATTCTTTCTACAAAGAC 58.836 37.037 9.87 2.26 46.38 3.01
4227 5244 9.413048 CGTTAGAGAATTCTTTCTACAAAGACT 57.587 33.333 9.87 0.00 46.38 3.24
4230 5247 8.996024 AGAGAATTCTTTCTACAAAGACTAGC 57.004 34.615 9.87 0.00 46.38 3.42
4231 5248 8.589338 AGAGAATTCTTTCTACAAAGACTAGCA 58.411 33.333 9.87 0.00 46.38 3.49
4232 5249 9.209175 GAGAATTCTTTCTACAAAGACTAGCAA 57.791 33.333 9.87 0.00 46.38 3.91
4233 5250 9.561069 AGAATTCTTTCTACAAAGACTAGCAAA 57.439 29.630 0.88 0.00 46.38 3.68
4234 5251 9.600646 GAATTCTTTCTACAAAGACTAGCAAAC 57.399 33.333 0.00 0.00 46.38 2.93
4235 5252 8.677148 ATTCTTTCTACAAAGACTAGCAAACA 57.323 30.769 0.00 0.00 46.38 2.83
4236 5253 8.677148 TTCTTTCTACAAAGACTAGCAAACAT 57.323 30.769 0.00 0.00 46.38 2.71
4237 5254 8.087982 TCTTTCTACAAAGACTAGCAAACATG 57.912 34.615 0.00 0.00 42.66 3.21
4238 5255 7.931407 TCTTTCTACAAAGACTAGCAAACATGA 59.069 33.333 0.00 0.00 42.66 3.07
4239 5256 7.421530 TTCTACAAAGACTAGCAAACATGAC 57.578 36.000 0.00 0.00 0.00 3.06
4240 5257 5.932303 TCTACAAAGACTAGCAAACATGACC 59.068 40.000 0.00 0.00 0.00 4.02
4241 5258 3.498397 ACAAAGACTAGCAAACATGACCG 59.502 43.478 0.00 0.00 0.00 4.79
4242 5259 3.402628 AAGACTAGCAAACATGACCGT 57.597 42.857 0.00 0.00 0.00 4.83
4243 5260 2.688507 AGACTAGCAAACATGACCGTG 58.311 47.619 0.00 0.00 0.00 4.94
4244 5261 1.128692 GACTAGCAAACATGACCGTGC 59.871 52.381 0.00 3.09 37.26 5.34
4245 5262 0.095245 CTAGCAAACATGACCGTGCG 59.905 55.000 0.00 0.00 41.90 5.34
4246 5263 0.601576 TAGCAAACATGACCGTGCGT 60.602 50.000 0.00 0.00 41.90 5.24
4247 5264 1.008995 GCAAACATGACCGTGCGTT 60.009 52.632 0.00 0.00 0.00 4.84
4248 5265 1.268113 GCAAACATGACCGTGCGTTG 61.268 55.000 0.00 0.00 0.00 4.10
4249 5266 1.008995 AAACATGACCGTGCGTTGC 60.009 52.632 0.00 0.00 0.00 4.17
4250 5267 1.719725 AAACATGACCGTGCGTTGCA 61.720 50.000 0.00 0.00 35.60 4.08
4259 5276 4.380980 TGCGTTGCACCGGAATAA 57.619 50.000 9.46 0.00 31.71 1.40
4260 5277 2.630214 TGCGTTGCACCGGAATAAA 58.370 47.368 9.46 0.00 31.71 1.40
4261 5278 0.952280 TGCGTTGCACCGGAATAAAA 59.048 45.000 9.46 0.00 31.71 1.52
4262 5279 1.337071 TGCGTTGCACCGGAATAAAAA 59.663 42.857 9.46 0.00 31.71 1.94
4283 5300 6.671614 AAAAACATCACACGACTCTAAACA 57.328 33.333 0.00 0.00 0.00 2.83
4284 5301 6.861065 AAAACATCACACGACTCTAAACAT 57.139 33.333 0.00 0.00 0.00 2.71
4285 5302 5.845985 AACATCACACGACTCTAAACATG 57.154 39.130 0.00 0.00 0.00 3.21
4286 5303 5.134202 ACATCACACGACTCTAAACATGA 57.866 39.130 0.00 0.00 0.00 3.07
4287 5304 4.923871 ACATCACACGACTCTAAACATGAC 59.076 41.667 0.00 0.00 0.00 3.06
4288 5305 3.909430 TCACACGACTCTAAACATGACC 58.091 45.455 0.00 0.00 0.00 4.02
4289 5306 3.319689 TCACACGACTCTAAACATGACCA 59.680 43.478 0.00 0.00 0.00 4.02
4290 5307 4.055360 CACACGACTCTAAACATGACCAA 58.945 43.478 0.00 0.00 0.00 3.67
4291 5308 4.150627 CACACGACTCTAAACATGACCAAG 59.849 45.833 0.00 0.00 0.00 3.61
4292 5309 4.038763 ACACGACTCTAAACATGACCAAGA 59.961 41.667 0.00 0.00 0.00 3.02
4293 5310 4.386049 CACGACTCTAAACATGACCAAGAC 59.614 45.833 0.00 0.00 0.00 3.01
4294 5311 4.038763 ACGACTCTAAACATGACCAAGACA 59.961 41.667 0.00 0.00 0.00 3.41
4295 5312 4.623167 CGACTCTAAACATGACCAAGACAG 59.377 45.833 0.00 0.00 0.00 3.51
4296 5313 5.564848 CGACTCTAAACATGACCAAGACAGA 60.565 44.000 0.00 0.00 0.00 3.41
4297 5314 6.174720 ACTCTAAACATGACCAAGACAGAA 57.825 37.500 0.00 0.00 0.00 3.02
4298 5315 6.226787 ACTCTAAACATGACCAAGACAGAAG 58.773 40.000 0.00 0.00 0.00 2.85
4299 5316 6.042093 ACTCTAAACATGACCAAGACAGAAGA 59.958 38.462 0.00 0.00 0.00 2.87
4300 5317 6.826668 TCTAAACATGACCAAGACAGAAGAA 58.173 36.000 0.00 0.00 0.00 2.52
4301 5318 7.279615 TCTAAACATGACCAAGACAGAAGAAA 58.720 34.615 0.00 0.00 0.00 2.52
4302 5319 6.773976 AAACATGACCAAGACAGAAGAAAA 57.226 33.333 0.00 0.00 0.00 2.29
4303 5320 6.773976 AACATGACCAAGACAGAAGAAAAA 57.226 33.333 0.00 0.00 0.00 1.94
4304 5321 6.136541 ACATGACCAAGACAGAAGAAAAAC 57.863 37.500 0.00 0.00 0.00 2.43
4305 5322 5.888161 ACATGACCAAGACAGAAGAAAAACT 59.112 36.000 0.00 0.00 0.00 2.66
4306 5323 6.038714 ACATGACCAAGACAGAAGAAAAACTC 59.961 38.462 0.00 0.00 0.00 3.01
4307 5324 4.881850 TGACCAAGACAGAAGAAAAACTCC 59.118 41.667 0.00 0.00 0.00 3.85
4308 5325 4.855340 ACCAAGACAGAAGAAAAACTCCA 58.145 39.130 0.00 0.00 0.00 3.86
4309 5326 5.449553 ACCAAGACAGAAGAAAAACTCCAT 58.550 37.500 0.00 0.00 0.00 3.41
4310 5327 5.300286 ACCAAGACAGAAGAAAAACTCCATG 59.700 40.000 0.00 0.00 0.00 3.66
4311 5328 5.218139 CAAGACAGAAGAAAAACTCCATGC 58.782 41.667 0.00 0.00 0.00 4.06
4312 5329 3.499918 AGACAGAAGAAAAACTCCATGCG 59.500 43.478 0.00 0.00 0.00 4.73
4313 5330 3.476552 ACAGAAGAAAAACTCCATGCGA 58.523 40.909 0.00 0.00 0.00 5.10
4314 5331 3.251004 ACAGAAGAAAAACTCCATGCGAC 59.749 43.478 0.00 0.00 0.00 5.19
4315 5332 3.499918 CAGAAGAAAAACTCCATGCGACT 59.500 43.478 0.00 0.00 0.00 4.18
4316 5333 3.748568 AGAAGAAAAACTCCATGCGACTC 59.251 43.478 0.00 0.00 0.00 3.36
4317 5334 3.409026 AGAAAAACTCCATGCGACTCT 57.591 42.857 0.00 0.00 0.00 3.24
4318 5335 4.537135 AGAAAAACTCCATGCGACTCTA 57.463 40.909 0.00 0.00 0.00 2.43
4319 5336 4.894784 AGAAAAACTCCATGCGACTCTAA 58.105 39.130 0.00 0.00 0.00 2.10
4320 5337 5.305585 AGAAAAACTCCATGCGACTCTAAA 58.694 37.500 0.00 0.00 0.00 1.85
4321 5338 5.763204 AGAAAAACTCCATGCGACTCTAAAA 59.237 36.000 0.00 0.00 0.00 1.52
4322 5339 6.262273 AGAAAAACTCCATGCGACTCTAAAAA 59.738 34.615 0.00 0.00 0.00 1.94
4323 5340 6.575162 AAAACTCCATGCGACTCTAAAAAT 57.425 33.333 0.00 0.00 0.00 1.82
4324 5341 5.551760 AACTCCATGCGACTCTAAAAATG 57.448 39.130 0.00 0.00 0.00 2.32
4325 5342 4.832248 ACTCCATGCGACTCTAAAAATGA 58.168 39.130 0.00 0.00 0.00 2.57
4326 5343 4.631813 ACTCCATGCGACTCTAAAAATGAC 59.368 41.667 0.00 0.00 0.00 3.06
4327 5344 4.832248 TCCATGCGACTCTAAAAATGACT 58.168 39.130 0.00 0.00 0.00 3.41
4328 5345 4.870426 TCCATGCGACTCTAAAAATGACTC 59.130 41.667 0.00 0.00 0.00 3.36
4329 5346 4.872691 CCATGCGACTCTAAAAATGACTCT 59.127 41.667 0.00 0.00 0.00 3.24
4330 5347 5.220548 CCATGCGACTCTAAAAATGACTCTG 60.221 44.000 0.00 0.00 0.00 3.35
4331 5348 5.134202 TGCGACTCTAAAAATGACTCTGA 57.866 39.130 0.00 0.00 0.00 3.27
4332 5349 5.164233 TGCGACTCTAAAAATGACTCTGAG 58.836 41.667 2.45 2.45 0.00 3.35
4333 5350 4.032331 GCGACTCTAAAAATGACTCTGAGC 59.968 45.833 4.19 0.00 0.00 4.26
4334 5351 4.564769 CGACTCTAAAAATGACTCTGAGCC 59.435 45.833 4.19 0.00 0.00 4.70
4335 5352 4.837972 ACTCTAAAAATGACTCTGAGCCC 58.162 43.478 4.19 0.00 0.00 5.19
4336 5353 4.534103 ACTCTAAAAATGACTCTGAGCCCT 59.466 41.667 4.19 0.00 0.00 5.19
4337 5354 5.091261 TCTAAAAATGACTCTGAGCCCTC 57.909 43.478 4.19 0.00 0.00 4.30
4338 5355 2.797177 AAAATGACTCTGAGCCCTCC 57.203 50.000 4.19 0.00 0.00 4.30
4339 5356 0.915364 AAATGACTCTGAGCCCTCCC 59.085 55.000 4.19 0.00 0.00 4.30
4340 5357 0.985490 AATGACTCTGAGCCCTCCCC 60.985 60.000 4.19 0.00 0.00 4.81
4341 5358 1.895886 ATGACTCTGAGCCCTCCCCT 61.896 60.000 4.19 0.00 0.00 4.79
4342 5359 1.760480 GACTCTGAGCCCTCCCCTC 60.760 68.421 4.19 0.00 0.00 4.30
4343 5360 2.445654 CTCTGAGCCCTCCCCTCC 60.446 72.222 0.00 0.00 0.00 4.30
4344 5361 4.095400 TCTGAGCCCTCCCCTCCC 62.095 72.222 0.00 0.00 0.00 4.30
4345 5362 4.101077 CTGAGCCCTCCCCTCCCT 62.101 72.222 0.00 0.00 0.00 4.20
4346 5363 4.095400 TGAGCCCTCCCCTCCCTC 62.095 72.222 0.00 0.00 0.00 4.30
4347 5364 3.773154 GAGCCCTCCCCTCCCTCT 61.773 72.222 0.00 0.00 0.00 3.69
4348 5365 3.767044 GAGCCCTCCCCTCCCTCTC 62.767 73.684 0.00 0.00 0.00 3.20
4349 5366 4.095400 GCCCTCCCCTCCCTCTCA 62.095 72.222 0.00 0.00 0.00 3.27
4350 5367 2.041405 CCCTCCCCTCCCTCTCAC 60.041 72.222 0.00 0.00 0.00 3.51
4351 5368 2.780693 CCTCCCCTCCCTCTCACA 59.219 66.667 0.00 0.00 0.00 3.58
4352 5369 1.687493 CCTCCCCTCCCTCTCACAC 60.687 68.421 0.00 0.00 0.00 3.82
4353 5370 1.079256 CTCCCCTCCCTCTCACACA 59.921 63.158 0.00 0.00 0.00 3.72
4354 5371 1.229209 TCCCCTCCCTCTCACACAC 60.229 63.158 0.00 0.00 0.00 3.82
4355 5372 1.536418 CCCCTCCCTCTCACACACA 60.536 63.158 0.00 0.00 0.00 3.72
4356 5373 1.674057 CCCTCCCTCTCACACACAC 59.326 63.158 0.00 0.00 0.00 3.82
4357 5374 1.290324 CCTCCCTCTCACACACACG 59.710 63.158 0.00 0.00 0.00 4.49
4358 5375 1.464376 CCTCCCTCTCACACACACGT 61.464 60.000 0.00 0.00 0.00 4.49
4359 5376 0.039074 CTCCCTCTCACACACACGTC 60.039 60.000 0.00 0.00 0.00 4.34
4360 5377 1.006102 CCCTCTCACACACACGTCC 60.006 63.158 0.00 0.00 0.00 4.79
4361 5378 1.464376 CCCTCTCACACACACGTCCT 61.464 60.000 0.00 0.00 0.00 3.85
4362 5379 0.039074 CCTCTCACACACACGTCCTC 60.039 60.000 0.00 0.00 0.00 3.71
4363 5380 0.955178 CTCTCACACACACGTCCTCT 59.045 55.000 0.00 0.00 0.00 3.69
4364 5381 2.152016 CTCTCACACACACGTCCTCTA 58.848 52.381 0.00 0.00 0.00 2.43
4365 5382 2.750166 CTCTCACACACACGTCCTCTAT 59.250 50.000 0.00 0.00 0.00 1.98
4366 5383 3.154710 TCTCACACACACGTCCTCTATT 58.845 45.455 0.00 0.00 0.00 1.73
4367 5384 3.572682 TCTCACACACACGTCCTCTATTT 59.427 43.478 0.00 0.00 0.00 1.40
4368 5385 3.909430 TCACACACACGTCCTCTATTTC 58.091 45.455 0.00 0.00 0.00 2.17
4369 5386 3.319689 TCACACACACGTCCTCTATTTCA 59.680 43.478 0.00 0.00 0.00 2.69
4370 5387 4.055360 CACACACACGTCCTCTATTTCAA 58.945 43.478 0.00 0.00 0.00 2.69
4371 5388 4.056050 ACACACACGTCCTCTATTTCAAC 58.944 43.478 0.00 0.00 0.00 3.18
4372 5389 4.055360 CACACACGTCCTCTATTTCAACA 58.945 43.478 0.00 0.00 0.00 3.33
4373 5390 4.150627 CACACACGTCCTCTATTTCAACAG 59.849 45.833 0.00 0.00 0.00 3.16
4374 5391 3.679980 CACACGTCCTCTATTTCAACAGG 59.320 47.826 0.00 0.00 0.00 4.00
4375 5392 3.323979 ACACGTCCTCTATTTCAACAGGT 59.676 43.478 0.00 0.00 0.00 4.00
4376 5393 3.927142 CACGTCCTCTATTTCAACAGGTC 59.073 47.826 0.00 0.00 0.00 3.85
4377 5394 3.576982 ACGTCCTCTATTTCAACAGGTCA 59.423 43.478 0.00 0.00 0.00 4.02
4378 5395 3.927142 CGTCCTCTATTTCAACAGGTCAC 59.073 47.826 0.00 0.00 0.00 3.67
4379 5396 3.927142 GTCCTCTATTTCAACAGGTCACG 59.073 47.826 0.00 0.00 0.00 4.35
4380 5397 2.673368 CCTCTATTTCAACAGGTCACGC 59.327 50.000 0.00 0.00 0.00 5.34
4381 5398 3.325870 CTCTATTTCAACAGGTCACGCA 58.674 45.455 0.00 0.00 0.00 5.24
4382 5399 3.064207 TCTATTTCAACAGGTCACGCAC 58.936 45.455 0.00 0.00 0.00 5.34
4390 5407 2.746277 GGTCACGCACCCATGTCC 60.746 66.667 0.00 0.00 39.69 4.02
4391 5408 2.347490 GTCACGCACCCATGTCCT 59.653 61.111 0.00 0.00 0.00 3.85
4392 5409 1.302511 GTCACGCACCCATGTCCTT 60.303 57.895 0.00 0.00 0.00 3.36
4393 5410 1.302431 TCACGCACCCATGTCCTTG 60.302 57.895 0.00 0.00 0.00 3.61
4394 5411 2.672996 ACGCACCCATGTCCTTGC 60.673 61.111 0.00 0.00 0.00 4.01
4395 5412 2.360350 CGCACCCATGTCCTTGCT 60.360 61.111 0.00 0.00 32.56 3.91
4396 5413 1.973281 CGCACCCATGTCCTTGCTT 60.973 57.895 0.00 0.00 32.56 3.91
4397 5414 1.526575 CGCACCCATGTCCTTGCTTT 61.527 55.000 0.00 0.00 32.56 3.51
4398 5415 1.544724 GCACCCATGTCCTTGCTTTA 58.455 50.000 0.00 0.00 32.00 1.85
4399 5416 2.102578 GCACCCATGTCCTTGCTTTAT 58.897 47.619 0.00 0.00 32.00 1.40
4400 5417 3.287222 GCACCCATGTCCTTGCTTTATA 58.713 45.455 0.00 0.00 32.00 0.98
4401 5418 3.891366 GCACCCATGTCCTTGCTTTATAT 59.109 43.478 0.00 0.00 32.00 0.86
4402 5419 5.070001 GCACCCATGTCCTTGCTTTATATA 58.930 41.667 0.00 0.00 32.00 0.86
4403 5420 5.534654 GCACCCATGTCCTTGCTTTATATAA 59.465 40.000 0.00 0.00 32.00 0.98
4404 5421 6.294176 GCACCCATGTCCTTGCTTTATATAAG 60.294 42.308 0.00 0.00 32.00 1.73
4405 5422 6.998074 CACCCATGTCCTTGCTTTATATAAGA 59.002 38.462 0.00 0.00 0.00 2.10
4406 5423 7.173907 CACCCATGTCCTTGCTTTATATAAGAG 59.826 40.741 0.00 0.00 0.00 2.85
4407 5424 6.150140 CCCATGTCCTTGCTTTATATAAGAGC 59.850 42.308 16.39 16.39 36.95 4.09
4408 5425 6.939163 CCATGTCCTTGCTTTATATAAGAGCT 59.061 38.462 20.49 0.00 37.32 4.09
4409 5426 8.097038 CCATGTCCTTGCTTTATATAAGAGCTA 58.903 37.037 20.49 15.63 37.32 3.32
4410 5427 9.494271 CATGTCCTTGCTTTATATAAGAGCTAA 57.506 33.333 20.49 15.00 37.32 3.09
4412 5429 9.899661 TGTCCTTGCTTTATATAAGAGCTAAAA 57.100 29.630 20.49 11.84 37.32 1.52
4414 5431 9.042008 TCCTTGCTTTATATAAGAGCTAAAACG 57.958 33.333 20.49 9.14 37.32 3.60
4415 5432 8.283291 CCTTGCTTTATATAAGAGCTAAAACGG 58.717 37.037 20.49 12.26 37.32 4.44
4416 5433 8.726870 TTGCTTTATATAAGAGCTAAAACGGT 57.273 30.769 20.49 0.00 37.32 4.83
4417 5434 9.820725 TTGCTTTATATAAGAGCTAAAACGGTA 57.179 29.630 20.49 4.92 37.32 4.02
4418 5435 9.820725 TGCTTTATATAAGAGCTAAAACGGTAA 57.179 29.630 20.49 4.46 37.32 2.85
4428 5445 8.400184 AGAGCTAAAACGGTAATTAAAAACCT 57.600 30.769 7.71 0.00 33.34 3.50
4429 5446 9.506018 AGAGCTAAAACGGTAATTAAAAACCTA 57.494 29.630 7.71 0.00 33.34 3.08
4436 5453 8.866970 AACGGTAATTAAAAACCTATTCTCCA 57.133 30.769 7.71 0.00 33.34 3.86
4437 5454 9.470399 AACGGTAATTAAAAACCTATTCTCCAT 57.530 29.630 7.71 0.00 33.34 3.41
4452 5469 9.155975 CCTATTCTCCATATTACTACAACATGC 57.844 37.037 0.00 0.00 0.00 4.06
4453 5470 9.710900 CTATTCTCCATATTACTACAACATGCA 57.289 33.333 0.00 0.00 0.00 3.96
4454 5471 8.613060 ATTCTCCATATTACTACAACATGCAG 57.387 34.615 0.00 0.00 0.00 4.41
4455 5472 7.360113 TCTCCATATTACTACAACATGCAGA 57.640 36.000 0.00 0.00 0.00 4.26
4456 5473 7.791029 TCTCCATATTACTACAACATGCAGAA 58.209 34.615 0.00 0.00 0.00 3.02
4457 5474 7.928167 TCTCCATATTACTACAACATGCAGAAG 59.072 37.037 0.00 0.00 0.00 2.85
4458 5475 7.564793 TCCATATTACTACAACATGCAGAAGT 58.435 34.615 0.00 0.00 0.00 3.01
4459 5476 8.046708 TCCATATTACTACAACATGCAGAAGTT 58.953 33.333 0.00 0.00 0.00 2.66
4461 5478 8.882736 CATATTACTACAACATGCAGAAGTTGA 58.117 33.333 26.41 14.34 46.01 3.18
4462 5479 7.744087 ATTACTACAACATGCAGAAGTTGAA 57.256 32.000 26.41 15.41 46.01 2.69
4463 5480 7.561021 TTACTACAACATGCAGAAGTTGAAA 57.439 32.000 26.41 16.61 46.01 2.69
4464 5481 6.064846 ACTACAACATGCAGAAGTTGAAAG 57.935 37.500 26.41 23.21 46.01 2.62
4465 5482 4.311816 ACAACATGCAGAAGTTGAAAGG 57.688 40.909 26.41 8.54 46.01 3.11
4466 5483 3.054878 CAACATGCAGAAGTTGAAAGGC 58.945 45.455 19.09 0.00 46.01 4.35
4467 5484 2.590821 ACATGCAGAAGTTGAAAGGCT 58.409 42.857 0.00 0.00 0.00 4.58
4468 5485 3.754965 ACATGCAGAAGTTGAAAGGCTA 58.245 40.909 0.00 0.00 0.00 3.93
4469 5486 4.144297 ACATGCAGAAGTTGAAAGGCTAA 58.856 39.130 0.00 0.00 0.00 3.09
4470 5487 4.022849 ACATGCAGAAGTTGAAAGGCTAAC 60.023 41.667 0.00 0.00 0.00 2.34
4471 5488 2.548057 TGCAGAAGTTGAAAGGCTAACG 59.452 45.455 0.00 0.00 32.24 3.18
4472 5489 2.806244 GCAGAAGTTGAAAGGCTAACGA 59.194 45.455 0.00 0.00 32.24 3.85
4473 5490 3.250040 GCAGAAGTTGAAAGGCTAACGAA 59.750 43.478 0.00 0.00 32.24 3.85
4474 5491 4.261031 GCAGAAGTTGAAAGGCTAACGAAA 60.261 41.667 0.00 0.00 32.24 3.46
4475 5492 5.732247 GCAGAAGTTGAAAGGCTAACGAAAA 60.732 40.000 0.00 0.00 32.24 2.29
4476 5493 6.262601 CAGAAGTTGAAAGGCTAACGAAAAA 58.737 36.000 0.00 0.00 32.24 1.94
4508 5525 9.855021 ATTGACTGGTTGCAAATTATAGTTAAC 57.145 29.630 0.00 0.00 0.00 2.01
4509 5526 8.630054 TGACTGGTTGCAAATTATAGTTAACT 57.370 30.769 13.68 13.68 0.00 2.24
4510 5527 9.727859 TGACTGGTTGCAAATTATAGTTAACTA 57.272 29.630 17.41 17.41 0.00 2.24
4582 5599 3.848353 ACAAATGGTGTTGGGCTCT 57.152 47.368 0.00 0.00 37.01 4.09
4583 5600 2.969821 ACAAATGGTGTTGGGCTCTA 57.030 45.000 0.00 0.00 37.01 2.43
4584 5601 3.237268 ACAAATGGTGTTGGGCTCTAA 57.763 42.857 0.00 0.00 37.01 2.10
4585 5602 2.890945 ACAAATGGTGTTGGGCTCTAAC 59.109 45.455 0.00 0.00 37.01 2.34
4586 5603 2.890311 CAAATGGTGTTGGGCTCTAACA 59.110 45.455 1.04 1.04 35.81 2.41
4587 5604 2.969821 ATGGTGTTGGGCTCTAACAA 57.030 45.000 5.86 0.00 39.50 2.83
4588 5605 2.738587 TGGTGTTGGGCTCTAACAAA 57.261 45.000 5.86 0.00 39.50 2.83
4589 5606 3.019799 TGGTGTTGGGCTCTAACAAAA 57.980 42.857 5.86 0.00 39.50 2.44
4590 5607 3.571590 TGGTGTTGGGCTCTAACAAAAT 58.428 40.909 5.86 0.00 39.50 1.82
4591 5608 3.320541 TGGTGTTGGGCTCTAACAAAATG 59.679 43.478 5.86 0.00 39.50 2.32
4592 5609 3.320826 GGTGTTGGGCTCTAACAAAATGT 59.679 43.478 5.86 0.00 39.50 2.71
4593 5610 4.202212 GGTGTTGGGCTCTAACAAAATGTT 60.202 41.667 5.86 0.99 43.88 2.71
4594 5611 5.010213 GGTGTTGGGCTCTAACAAAATGTTA 59.990 40.000 5.86 3.22 41.45 2.41
4595 5612 6.461788 GGTGTTGGGCTCTAACAAAATGTTAA 60.462 38.462 5.86 0.00 41.70 2.01
4596 5613 6.981559 GTGTTGGGCTCTAACAAAATGTTAAA 59.018 34.615 5.86 0.00 41.70 1.52
4597 5614 7.492994 GTGTTGGGCTCTAACAAAATGTTAAAA 59.507 33.333 5.86 0.00 41.70 1.52
4598 5615 8.041323 TGTTGGGCTCTAACAAAATGTTAAAAA 58.959 29.630 4.68 0.00 41.70 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
278 279 4.191544 CAACATTTCTAGCCCGAGAATGA 58.808 43.478 0.00 0.00 35.41 2.57
387 388 9.246670 CCATATGTTATTCAACACCATATGGAT 57.753 33.333 28.77 12.84 46.61 3.41
452 453 8.577939 CACACAACAAGCATTAATAATTCGAAG 58.422 33.333 3.35 0.00 0.00 3.79
502 503 7.614192 AGCAATAAATCATCCATCATATGCTGA 59.386 33.333 8.13 0.10 38.53 4.26
753 820 0.981183 CCACCACCTAGGCACTACAA 59.019 55.000 9.30 0.00 43.14 2.41
1655 1732 3.386726 TCATATTGTAGCGGTGCTTAGGT 59.613 43.478 3.95 0.00 40.44 3.08
1679 1756 3.909995 CCCCTCCATGATATTACACCTCA 59.090 47.826 0.00 0.00 0.00 3.86
2394 2488 3.965379 TGACAAAGGGAACAGCGTATA 57.035 42.857 0.00 0.00 0.00 1.47
2400 2494 2.185004 ACCGATGACAAAGGGAACAG 57.815 50.000 4.83 0.00 0.00 3.16
2429 2523 1.504647 CCGACGATCGAATCTCGGGA 61.505 60.000 27.86 0.00 43.74 5.14
2657 2752 7.380423 AGGTGATTATAAAGGTGCTCTACAT 57.620 36.000 0.00 0.00 0.00 2.29
2756 2851 8.887717 GCTTTCTTCATGACTTATACATGTTCT 58.112 33.333 2.30 0.00 43.56 3.01
3147 3248 6.838382 ACACCCATTAGAGAAGTAAAGTTGT 58.162 36.000 0.00 0.00 0.00 3.32
3163 3264 1.185315 GCCTGCACAATACACCCATT 58.815 50.000 0.00 0.00 0.00 3.16
3260 3361 2.093921 TCACCGTCCGCATGATCTTTTA 60.094 45.455 0.00 0.00 0.00 1.52
3304 3405 1.004799 CAGCAGTCTCAGCAGCAGT 60.005 57.895 0.00 0.00 0.00 4.40
3305 3406 2.392181 GCAGCAGTCTCAGCAGCAG 61.392 63.158 0.00 0.00 43.05 4.24
3306 3407 2.358369 GCAGCAGTCTCAGCAGCA 60.358 61.111 0.00 0.00 43.05 4.41
3307 3408 2.358369 TGCAGCAGTCTCAGCAGC 60.358 61.111 0.00 0.00 43.71 5.25
3308 3409 3.877728 CTGCAGCAGTCTCAGCAG 58.122 61.111 14.90 0.00 46.98 4.24
3309 3410 0.108281 GATCTGCAGCAGTCTCAGCA 60.108 55.000 22.10 0.88 35.43 4.41
3310 3411 0.176219 AGATCTGCAGCAGTCTCAGC 59.824 55.000 22.10 5.62 32.61 4.26
3311 3412 2.950975 TCTAGATCTGCAGCAGTCTCAG 59.049 50.000 22.10 17.74 32.61 3.35
3312 3413 3.010200 TCTAGATCTGCAGCAGTCTCA 57.990 47.619 22.10 11.03 32.61 3.27
3313 3414 3.631686 TCTTCTAGATCTGCAGCAGTCTC 59.368 47.826 22.10 18.40 32.61 3.36
3314 3415 3.630168 TCTTCTAGATCTGCAGCAGTCT 58.370 45.455 22.10 22.60 32.61 3.24
3315 3416 4.383850 TTCTTCTAGATCTGCAGCAGTC 57.616 45.455 22.10 17.40 32.61 3.51
3374 3499 1.167851 AATGGCATCACCTGTTCGTG 58.832 50.000 0.00 0.00 40.22 4.35
3396 3521 4.583489 GTCCTCATTTCTCCAATCATGCAT 59.417 41.667 0.00 0.00 0.00 3.96
3789 4804 9.469807 GTTCCAAATGTAACATCACAATTGTTA 57.530 29.630 8.77 0.62 37.53 2.41
4106 5123 6.981559 TGTAATGGACATGAATACGAATTCGA 59.018 34.615 33.05 17.23 37.77 3.71
4178 5195 4.455533 GCTGTGTTTGGATGTCTGTATTGA 59.544 41.667 0.00 0.00 0.00 2.57
4215 5232 6.426937 GGTCATGTTTGCTAGTCTTTGTAGAA 59.573 38.462 0.00 0.00 30.65 2.10
4216 5233 5.932303 GGTCATGTTTGCTAGTCTTTGTAGA 59.068 40.000 0.00 0.00 0.00 2.59
4217 5234 5.163953 CGGTCATGTTTGCTAGTCTTTGTAG 60.164 44.000 0.00 0.00 0.00 2.74
4218 5235 4.688879 CGGTCATGTTTGCTAGTCTTTGTA 59.311 41.667 0.00 0.00 0.00 2.41
4219 5236 3.498397 CGGTCATGTTTGCTAGTCTTTGT 59.502 43.478 0.00 0.00 0.00 2.83
4220 5237 3.498397 ACGGTCATGTTTGCTAGTCTTTG 59.502 43.478 0.00 0.00 0.00 2.77
4221 5238 3.498397 CACGGTCATGTTTGCTAGTCTTT 59.502 43.478 0.00 0.00 0.00 2.52
4222 5239 3.067106 CACGGTCATGTTTGCTAGTCTT 58.933 45.455 0.00 0.00 0.00 3.01
4223 5240 2.688507 CACGGTCATGTTTGCTAGTCT 58.311 47.619 0.00 0.00 0.00 3.24
4224 5241 1.128692 GCACGGTCATGTTTGCTAGTC 59.871 52.381 0.00 0.00 32.00 2.59
4225 5242 1.156736 GCACGGTCATGTTTGCTAGT 58.843 50.000 0.00 0.00 32.00 2.57
4226 5243 0.095245 CGCACGGTCATGTTTGCTAG 59.905 55.000 0.00 0.00 32.56 3.42
4227 5244 0.601576 ACGCACGGTCATGTTTGCTA 60.602 50.000 0.00 0.00 32.56 3.49
4228 5245 1.444119 AACGCACGGTCATGTTTGCT 61.444 50.000 0.00 0.00 32.56 3.91
4229 5246 1.008995 AACGCACGGTCATGTTTGC 60.009 52.632 0.00 0.00 0.00 3.68
4230 5247 1.268113 GCAACGCACGGTCATGTTTG 61.268 55.000 0.00 0.00 0.00 2.93
4231 5248 1.008995 GCAACGCACGGTCATGTTT 60.009 52.632 0.00 0.00 0.00 2.83
4232 5249 2.183504 TGCAACGCACGGTCATGTT 61.184 52.632 0.00 0.00 31.71 2.71
4233 5250 2.590291 TGCAACGCACGGTCATGT 60.590 55.556 0.00 0.00 31.71 3.21
4242 5259 0.952280 TTTTATTCCGGTGCAACGCA 59.048 45.000 21.21 0.00 38.12 5.24
4243 5260 2.053282 TTTTTATTCCGGTGCAACGC 57.947 45.000 21.21 0.00 38.12 4.84
4260 5277 6.671614 TGTTTAGAGTCGTGTGATGTTTTT 57.328 33.333 0.00 0.00 0.00 1.94
4261 5278 6.481976 TCATGTTTAGAGTCGTGTGATGTTTT 59.518 34.615 0.00 0.00 0.00 2.43
4262 5279 5.989168 TCATGTTTAGAGTCGTGTGATGTTT 59.011 36.000 0.00 0.00 0.00 2.83
4263 5280 5.405571 GTCATGTTTAGAGTCGTGTGATGTT 59.594 40.000 0.00 0.00 0.00 2.71
4264 5281 4.923871 GTCATGTTTAGAGTCGTGTGATGT 59.076 41.667 0.00 0.00 0.00 3.06
4265 5282 4.327357 GGTCATGTTTAGAGTCGTGTGATG 59.673 45.833 0.00 0.00 0.00 3.07
4266 5283 4.021456 TGGTCATGTTTAGAGTCGTGTGAT 60.021 41.667 0.00 0.00 0.00 3.06
4267 5284 3.319689 TGGTCATGTTTAGAGTCGTGTGA 59.680 43.478 0.00 0.00 0.00 3.58
4268 5285 3.649073 TGGTCATGTTTAGAGTCGTGTG 58.351 45.455 0.00 0.00 0.00 3.82
4269 5286 4.038763 TCTTGGTCATGTTTAGAGTCGTGT 59.961 41.667 0.00 0.00 0.00 4.49
4270 5287 4.386049 GTCTTGGTCATGTTTAGAGTCGTG 59.614 45.833 0.00 0.00 0.00 4.35
4271 5288 4.038763 TGTCTTGGTCATGTTTAGAGTCGT 59.961 41.667 0.00 0.00 0.00 4.34
4272 5289 4.556233 TGTCTTGGTCATGTTTAGAGTCG 58.444 43.478 0.00 0.00 0.00 4.18
4273 5290 5.784177 TCTGTCTTGGTCATGTTTAGAGTC 58.216 41.667 0.00 0.00 0.00 3.36
4274 5291 5.808366 TCTGTCTTGGTCATGTTTAGAGT 57.192 39.130 0.00 0.00 0.00 3.24
4275 5292 6.459066 TCTTCTGTCTTGGTCATGTTTAGAG 58.541 40.000 0.00 0.00 0.00 2.43
4276 5293 6.419484 TCTTCTGTCTTGGTCATGTTTAGA 57.581 37.500 0.00 0.00 0.00 2.10
4277 5294 7.496529 TTTCTTCTGTCTTGGTCATGTTTAG 57.503 36.000 0.00 0.00 0.00 1.85
4278 5295 7.873719 TTTTCTTCTGTCTTGGTCATGTTTA 57.126 32.000 0.00 0.00 0.00 2.01
4279 5296 6.773976 TTTTCTTCTGTCTTGGTCATGTTT 57.226 33.333 0.00 0.00 0.00 2.83
4280 5297 6.378280 AGTTTTTCTTCTGTCTTGGTCATGTT 59.622 34.615 0.00 0.00 0.00 2.71
4281 5298 5.888161 AGTTTTTCTTCTGTCTTGGTCATGT 59.112 36.000 0.00 0.00 0.00 3.21
4282 5299 6.382869 AGTTTTTCTTCTGTCTTGGTCATG 57.617 37.500 0.00 0.00 0.00 3.07
4283 5300 5.532779 GGAGTTTTTCTTCTGTCTTGGTCAT 59.467 40.000 0.00 0.00 0.00 3.06
4284 5301 4.881850 GGAGTTTTTCTTCTGTCTTGGTCA 59.118 41.667 0.00 0.00 0.00 4.02
4285 5302 4.881850 TGGAGTTTTTCTTCTGTCTTGGTC 59.118 41.667 0.00 0.00 0.00 4.02
4286 5303 4.855340 TGGAGTTTTTCTTCTGTCTTGGT 58.145 39.130 0.00 0.00 0.00 3.67
4287 5304 5.766222 CATGGAGTTTTTCTTCTGTCTTGG 58.234 41.667 0.00 0.00 0.00 3.61
4288 5305 5.218139 GCATGGAGTTTTTCTTCTGTCTTG 58.782 41.667 0.00 0.00 0.00 3.02
4289 5306 4.023707 CGCATGGAGTTTTTCTTCTGTCTT 60.024 41.667 0.00 0.00 0.00 3.01
4290 5307 3.499918 CGCATGGAGTTTTTCTTCTGTCT 59.500 43.478 0.00 0.00 0.00 3.41
4291 5308 3.498397 TCGCATGGAGTTTTTCTTCTGTC 59.502 43.478 0.00 0.00 0.00 3.51
4292 5309 3.251004 GTCGCATGGAGTTTTTCTTCTGT 59.749 43.478 0.00 0.00 0.00 3.41
4293 5310 3.499918 AGTCGCATGGAGTTTTTCTTCTG 59.500 43.478 0.00 0.00 0.00 3.02
4294 5311 3.744660 AGTCGCATGGAGTTTTTCTTCT 58.255 40.909 0.00 0.00 0.00 2.85
4295 5312 3.748568 AGAGTCGCATGGAGTTTTTCTTC 59.251 43.478 0.00 0.00 0.00 2.87
4296 5313 3.744660 AGAGTCGCATGGAGTTTTTCTT 58.255 40.909 0.00 0.00 0.00 2.52
4297 5314 3.409026 AGAGTCGCATGGAGTTTTTCT 57.591 42.857 0.00 0.00 0.00 2.52
4298 5315 5.607119 TTTAGAGTCGCATGGAGTTTTTC 57.393 39.130 0.00 0.00 0.00 2.29
4299 5316 6.385649 TTTTTAGAGTCGCATGGAGTTTTT 57.614 33.333 0.00 0.00 0.00 1.94
4300 5317 6.206634 TCATTTTTAGAGTCGCATGGAGTTTT 59.793 34.615 0.00 0.00 0.00 2.43
4301 5318 5.705441 TCATTTTTAGAGTCGCATGGAGTTT 59.295 36.000 0.00 0.00 0.00 2.66
4302 5319 5.122396 GTCATTTTTAGAGTCGCATGGAGTT 59.878 40.000 0.00 0.00 0.00 3.01
4303 5320 4.631813 GTCATTTTTAGAGTCGCATGGAGT 59.368 41.667 0.00 0.00 0.00 3.85
4304 5321 4.872691 AGTCATTTTTAGAGTCGCATGGAG 59.127 41.667 0.00 0.00 0.00 3.86
4305 5322 4.832248 AGTCATTTTTAGAGTCGCATGGA 58.168 39.130 0.00 0.00 0.00 3.41
4306 5323 4.872691 AGAGTCATTTTTAGAGTCGCATGG 59.127 41.667 0.00 0.00 39.78 3.66
4307 5324 5.578336 TCAGAGTCATTTTTAGAGTCGCATG 59.422 40.000 0.00 0.00 39.78 4.06
4308 5325 5.724328 TCAGAGTCATTTTTAGAGTCGCAT 58.276 37.500 0.00 0.00 39.78 4.73
4309 5326 5.134202 TCAGAGTCATTTTTAGAGTCGCA 57.866 39.130 0.00 0.00 39.78 5.10
4310 5327 4.032331 GCTCAGAGTCATTTTTAGAGTCGC 59.968 45.833 0.00 0.00 39.78 5.19
4311 5328 4.564769 GGCTCAGAGTCATTTTTAGAGTCG 59.435 45.833 0.00 0.00 39.78 4.18
4312 5329 4.873259 GGGCTCAGAGTCATTTTTAGAGTC 59.127 45.833 3.96 0.00 36.03 3.36
4313 5330 4.534103 AGGGCTCAGAGTCATTTTTAGAGT 59.466 41.667 3.96 0.00 0.00 3.24
4314 5331 5.096443 AGGGCTCAGAGTCATTTTTAGAG 57.904 43.478 3.96 0.00 0.00 2.43
4315 5332 4.080863 GGAGGGCTCAGAGTCATTTTTAGA 60.081 45.833 3.96 0.00 0.00 2.10
4316 5333 4.195416 GGAGGGCTCAGAGTCATTTTTAG 58.805 47.826 3.96 0.00 0.00 1.85
4317 5334 3.054361 GGGAGGGCTCAGAGTCATTTTTA 60.054 47.826 3.96 0.00 0.00 1.52
4318 5335 2.291217 GGGAGGGCTCAGAGTCATTTTT 60.291 50.000 3.96 0.00 0.00 1.94
4319 5336 1.283321 GGGAGGGCTCAGAGTCATTTT 59.717 52.381 3.96 0.00 0.00 1.82
4320 5337 0.915364 GGGAGGGCTCAGAGTCATTT 59.085 55.000 3.96 0.00 0.00 2.32
4321 5338 0.985490 GGGGAGGGCTCAGAGTCATT 60.985 60.000 3.96 0.00 0.00 2.57
4322 5339 1.383803 GGGGAGGGCTCAGAGTCAT 60.384 63.158 3.96 0.00 0.00 3.06
4323 5340 2.039624 GGGGAGGGCTCAGAGTCA 59.960 66.667 3.96 0.00 0.00 3.41
4324 5341 1.760480 GAGGGGAGGGCTCAGAGTC 60.760 68.421 0.00 0.00 0.00 3.36
4325 5342 2.366570 GAGGGGAGGGCTCAGAGT 59.633 66.667 0.00 0.00 0.00 3.24
4326 5343 2.445654 GGAGGGGAGGGCTCAGAG 60.446 72.222 0.00 0.00 0.00 3.35
4327 5344 4.095400 GGGAGGGGAGGGCTCAGA 62.095 72.222 0.00 0.00 0.00 3.27
4328 5345 4.101077 AGGGAGGGGAGGGCTCAG 62.101 72.222 0.00 0.00 0.00 3.35
4329 5346 4.095400 GAGGGAGGGGAGGGCTCA 62.095 72.222 0.00 0.00 0.00 4.26
4330 5347 3.767044 GAGAGGGAGGGGAGGGCTC 62.767 73.684 0.00 0.00 0.00 4.70
4331 5348 3.773154 GAGAGGGAGGGGAGGGCT 61.773 72.222 0.00 0.00 0.00 5.19
4332 5349 4.095400 TGAGAGGGAGGGGAGGGC 62.095 72.222 0.00 0.00 0.00 5.19
4333 5350 2.041405 GTGAGAGGGAGGGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
4334 5351 1.687493 GTGTGAGAGGGAGGGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
4335 5352 1.079256 TGTGTGAGAGGGAGGGGAG 59.921 63.158 0.00 0.00 0.00 4.30
4336 5353 1.229209 GTGTGTGAGAGGGAGGGGA 60.229 63.158 0.00 0.00 0.00 4.81
4337 5354 1.536418 TGTGTGTGAGAGGGAGGGG 60.536 63.158 0.00 0.00 0.00 4.79
4338 5355 1.674057 GTGTGTGTGAGAGGGAGGG 59.326 63.158 0.00 0.00 0.00 4.30
4339 5356 1.290324 CGTGTGTGTGAGAGGGAGG 59.710 63.158 0.00 0.00 0.00 4.30
4340 5357 0.039074 GACGTGTGTGTGAGAGGGAG 60.039 60.000 0.00 0.00 0.00 4.30
4341 5358 1.461091 GGACGTGTGTGTGAGAGGGA 61.461 60.000 0.00 0.00 0.00 4.20
4342 5359 1.006102 GGACGTGTGTGTGAGAGGG 60.006 63.158 0.00 0.00 0.00 4.30
4343 5360 0.039074 GAGGACGTGTGTGTGAGAGG 60.039 60.000 0.00 0.00 0.00 3.69
4344 5361 0.955178 AGAGGACGTGTGTGTGAGAG 59.045 55.000 0.00 0.00 0.00 3.20
4345 5362 2.265589 TAGAGGACGTGTGTGTGAGA 57.734 50.000 0.00 0.00 0.00 3.27
4346 5363 3.577649 AATAGAGGACGTGTGTGTGAG 57.422 47.619 0.00 0.00 0.00 3.51
4347 5364 3.319689 TGAAATAGAGGACGTGTGTGTGA 59.680 43.478 0.00 0.00 0.00 3.58
4348 5365 3.649073 TGAAATAGAGGACGTGTGTGTG 58.351 45.455 0.00 0.00 0.00 3.82
4349 5366 4.056050 GTTGAAATAGAGGACGTGTGTGT 58.944 43.478 0.00 0.00 0.00 3.72
4350 5367 4.055360 TGTTGAAATAGAGGACGTGTGTG 58.945 43.478 0.00 0.00 0.00 3.82
4351 5368 4.307432 CTGTTGAAATAGAGGACGTGTGT 58.693 43.478 0.00 0.00 0.00 3.72
4352 5369 3.679980 CCTGTTGAAATAGAGGACGTGTG 59.320 47.826 0.00 0.00 0.00 3.82
4353 5370 3.323979 ACCTGTTGAAATAGAGGACGTGT 59.676 43.478 0.00 0.00 0.00 4.49
4354 5371 3.926616 ACCTGTTGAAATAGAGGACGTG 58.073 45.455 0.00 0.00 0.00 4.49
4355 5372 3.576982 TGACCTGTTGAAATAGAGGACGT 59.423 43.478 0.00 0.00 0.00 4.34
4356 5373 3.927142 GTGACCTGTTGAAATAGAGGACG 59.073 47.826 0.00 0.00 0.00 4.79
4357 5374 3.927142 CGTGACCTGTTGAAATAGAGGAC 59.073 47.826 0.00 0.00 0.00 3.85
4358 5375 3.616560 GCGTGACCTGTTGAAATAGAGGA 60.617 47.826 0.00 0.00 0.00 3.71
4359 5376 2.673368 GCGTGACCTGTTGAAATAGAGG 59.327 50.000 0.00 0.00 0.00 3.69
4360 5377 3.123621 GTGCGTGACCTGTTGAAATAGAG 59.876 47.826 0.00 0.00 0.00 2.43
4361 5378 3.064207 GTGCGTGACCTGTTGAAATAGA 58.936 45.455 0.00 0.00 0.00 1.98
4362 5379 2.159627 GGTGCGTGACCTGTTGAAATAG 59.840 50.000 0.00 0.00 42.25 1.73
4363 5380 2.147958 GGTGCGTGACCTGTTGAAATA 58.852 47.619 0.00 0.00 42.25 1.40
4364 5381 0.951558 GGTGCGTGACCTGTTGAAAT 59.048 50.000 0.00 0.00 42.25 2.17
4365 5382 1.098712 GGGTGCGTGACCTGTTGAAA 61.099 55.000 5.82 0.00 45.33 2.69
4366 5383 1.525077 GGGTGCGTGACCTGTTGAA 60.525 57.895 5.82 0.00 45.33 2.69
4367 5384 2.050836 ATGGGTGCGTGACCTGTTGA 62.051 55.000 5.82 0.00 45.33 3.18
4368 5385 1.600636 ATGGGTGCGTGACCTGTTG 60.601 57.895 5.82 0.00 45.33 3.33
4369 5386 1.600636 CATGGGTGCGTGACCTGTT 60.601 57.895 5.82 0.00 45.33 3.16
4370 5387 2.032528 CATGGGTGCGTGACCTGT 59.967 61.111 5.82 0.00 45.33 4.00
4371 5388 2.032528 ACATGGGTGCGTGACCTG 59.967 61.111 0.00 0.85 45.33 4.00
4372 5389 2.347490 GACATGGGTGCGTGACCT 59.653 61.111 0.00 0.00 45.33 3.85
4373 5390 2.746277 GGACATGGGTGCGTGACC 60.746 66.667 0.00 0.00 45.28 4.02
4374 5391 1.302511 AAGGACATGGGTGCGTGAC 60.303 57.895 0.00 0.00 40.77 3.67
4375 5392 1.302431 CAAGGACATGGGTGCGTGA 60.302 57.895 0.00 0.00 45.08 4.35
4376 5393 2.981560 GCAAGGACATGGGTGCGTG 61.982 63.158 0.00 0.00 45.06 5.34
4377 5394 2.672996 GCAAGGACATGGGTGCGT 60.673 61.111 0.00 0.00 40.77 5.24
4378 5395 1.526575 AAAGCAAGGACATGGGTGCG 61.527 55.000 0.00 0.00 41.90 5.34
4379 5396 1.544724 TAAAGCAAGGACATGGGTGC 58.455 50.000 0.00 0.68 37.26 5.01
4380 5397 6.998074 TCTTATATAAAGCAAGGACATGGGTG 59.002 38.462 0.00 0.00 0.00 4.61
4381 5398 7.149202 TCTTATATAAAGCAAGGACATGGGT 57.851 36.000 0.00 0.00 0.00 4.51
4382 5399 6.150140 GCTCTTATATAAAGCAAGGACATGGG 59.850 42.308 17.50 0.00 36.06 4.00
4383 5400 6.939163 AGCTCTTATATAAAGCAAGGACATGG 59.061 38.462 21.34 0.19 38.51 3.66
4384 5401 7.976135 AGCTCTTATATAAAGCAAGGACATG 57.024 36.000 21.34 0.00 38.51 3.21
4386 5403 9.899661 TTTTAGCTCTTATATAAAGCAAGGACA 57.100 29.630 21.34 7.01 38.51 4.02
4388 5405 9.042008 CGTTTTAGCTCTTATATAAAGCAAGGA 57.958 33.333 21.34 6.22 38.51 3.36
4389 5406 8.283291 CCGTTTTAGCTCTTATATAAAGCAAGG 58.717 37.037 21.34 15.26 38.51 3.61
4390 5407 8.827677 ACCGTTTTAGCTCTTATATAAAGCAAG 58.172 33.333 21.34 9.39 38.51 4.01
4391 5408 8.726870 ACCGTTTTAGCTCTTATATAAAGCAA 57.273 30.769 21.34 14.57 38.51 3.91
4392 5409 9.820725 TTACCGTTTTAGCTCTTATATAAAGCA 57.179 29.630 21.34 11.40 38.51 3.91
4402 5419 8.853126 AGGTTTTTAATTACCGTTTTAGCTCTT 58.147 29.630 0.00 0.00 39.46 2.85
4403 5420 8.400184 AGGTTTTTAATTACCGTTTTAGCTCT 57.600 30.769 0.00 0.00 39.46 4.09
4410 5427 9.299465 TGGAGAATAGGTTTTTAATTACCGTTT 57.701 29.630 0.00 0.00 39.46 3.60
4411 5428 8.866970 TGGAGAATAGGTTTTTAATTACCGTT 57.133 30.769 0.00 0.00 39.46 4.44
4426 5443 9.155975 GCATGTTGTAGTAATATGGAGAATAGG 57.844 37.037 0.00 0.00 0.00 2.57
4427 5444 9.710900 TGCATGTTGTAGTAATATGGAGAATAG 57.289 33.333 0.00 0.00 0.00 1.73
4428 5445 9.710900 CTGCATGTTGTAGTAATATGGAGAATA 57.289 33.333 10.73 0.00 38.71 1.75
4429 5446 8.432013 TCTGCATGTTGTAGTAATATGGAGAAT 58.568 33.333 14.64 0.00 40.91 2.40
4430 5447 7.791029 TCTGCATGTTGTAGTAATATGGAGAA 58.209 34.615 14.64 3.53 40.91 2.87
4431 5448 7.360113 TCTGCATGTTGTAGTAATATGGAGA 57.640 36.000 13.55 13.55 41.32 3.71
4432 5449 7.712639 ACTTCTGCATGTTGTAGTAATATGGAG 59.287 37.037 10.19 10.19 38.11 3.86
4433 5450 7.564793 ACTTCTGCATGTTGTAGTAATATGGA 58.435 34.615 0.00 0.00 31.74 3.41
4434 5451 7.792374 ACTTCTGCATGTTGTAGTAATATGG 57.208 36.000 0.00 0.00 31.74 2.74
4435 5452 8.882736 TCAACTTCTGCATGTTGTAGTAATATG 58.117 33.333 19.61 0.00 42.71 1.78
4436 5453 9.448438 TTCAACTTCTGCATGTTGTAGTAATAT 57.552 29.630 19.61 0.00 42.71 1.28
4437 5454 8.840833 TTCAACTTCTGCATGTTGTAGTAATA 57.159 30.769 19.61 4.12 42.71 0.98
4438 5455 7.744087 TTCAACTTCTGCATGTTGTAGTAAT 57.256 32.000 19.61 0.00 42.71 1.89
4439 5456 7.255104 CCTTTCAACTTCTGCATGTTGTAGTAA 60.255 37.037 19.61 9.53 42.71 2.24
4440 5457 6.204688 CCTTTCAACTTCTGCATGTTGTAGTA 59.795 38.462 19.61 5.40 42.71 1.82
4441 5458 5.009010 CCTTTCAACTTCTGCATGTTGTAGT 59.991 40.000 19.61 3.10 42.71 2.73
4442 5459 5.455392 CCTTTCAACTTCTGCATGTTGTAG 58.545 41.667 19.61 17.47 42.71 2.74
4443 5460 4.261572 GCCTTTCAACTTCTGCATGTTGTA 60.262 41.667 19.61 12.15 42.71 2.41
4444 5461 3.491447 GCCTTTCAACTTCTGCATGTTGT 60.491 43.478 19.61 2.68 42.71 3.32
4445 5462 3.054878 GCCTTTCAACTTCTGCATGTTG 58.945 45.455 16.37 16.37 43.28 3.33
4446 5463 2.961062 AGCCTTTCAACTTCTGCATGTT 59.039 40.909 0.00 0.00 0.00 2.71
4447 5464 2.590821 AGCCTTTCAACTTCTGCATGT 58.409 42.857 0.00 0.00 0.00 3.21
4448 5465 4.479619 GTTAGCCTTTCAACTTCTGCATG 58.520 43.478 0.00 0.00 0.00 4.06
4449 5466 3.189287 CGTTAGCCTTTCAACTTCTGCAT 59.811 43.478 0.00 0.00 0.00 3.96
4450 5467 2.548057 CGTTAGCCTTTCAACTTCTGCA 59.452 45.455 0.00 0.00 0.00 4.41
4451 5468 2.806244 TCGTTAGCCTTTCAACTTCTGC 59.194 45.455 0.00 0.00 0.00 4.26
4452 5469 5.418310 TTTCGTTAGCCTTTCAACTTCTG 57.582 39.130 0.00 0.00 0.00 3.02
4453 5470 6.445357 TTTTTCGTTAGCCTTTCAACTTCT 57.555 33.333 0.00 0.00 0.00 2.85
4482 5499 9.855021 GTTAACTATAATTTGCAACCAGTCAAT 57.145 29.630 0.00 0.00 0.00 2.57
4483 5500 9.073475 AGTTAACTATAATTTGCAACCAGTCAA 57.927 29.630 6.26 0.00 0.00 3.18
4484 5501 8.630054 AGTTAACTATAATTTGCAACCAGTCA 57.370 30.769 6.26 0.00 0.00 3.41
4564 5581 2.890945 GTTAGAGCCCAACACCATTTGT 59.109 45.455 0.00 0.00 41.74 2.83
4565 5582 2.890311 TGTTAGAGCCCAACACCATTTG 59.110 45.455 0.00 0.00 31.11 2.32
4566 5583 3.237268 TGTTAGAGCCCAACACCATTT 57.763 42.857 0.00 0.00 31.11 2.32
4567 5584 2.969821 TGTTAGAGCCCAACACCATT 57.030 45.000 0.00 0.00 31.11 3.16
4568 5585 2.969821 TTGTTAGAGCCCAACACCAT 57.030 45.000 0.00 0.00 35.70 3.55
4569 5586 2.738587 TTTGTTAGAGCCCAACACCA 57.261 45.000 0.00 0.00 35.70 4.17
4570 5587 3.320826 ACATTTTGTTAGAGCCCAACACC 59.679 43.478 0.00 0.00 35.70 4.16
4571 5588 4.584327 ACATTTTGTTAGAGCCCAACAC 57.416 40.909 0.00 0.00 35.70 3.32
4572 5589 6.716934 TTAACATTTTGTTAGAGCCCAACA 57.283 33.333 0.91 0.00 42.93 3.33
4573 5590 8.426881 TTTTTAACATTTTGTTAGAGCCCAAC 57.573 30.769 0.91 0.00 42.93 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.