Multiple sequence alignment - TraesCS5A01G508000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G508000 chr5A 100.000 4939 0 0 1001 5939 672343584 672338646 0.000000e+00 9121
1 TraesCS5A01G508000 chr5A 100.000 637 0 0 1 637 672344584 672343948 0.000000e+00 1177
2 TraesCS5A01G508000 chr5A 89.925 536 41 7 1 529 353611516 353610987 0.000000e+00 678
3 TraesCS5A01G508000 chr5A 91.445 339 22 4 192 529 616360786 616360454 5.930000e-125 459
4 TraesCS5A01G508000 chr5A 87.601 371 26 9 160 524 346098355 346097999 4.680000e-111 412
5 TraesCS5A01G508000 chr5A 100.000 222 0 0 6265 6486 672338320 672338099 1.680000e-110 411
6 TraesCS5A01G508000 chr5A 89.873 158 10 3 1 152 616360945 616360788 1.430000e-46 198
7 TraesCS5A01G508000 chr4D 95.120 3053 120 10 1001 4040 491716008 491719044 0.000000e+00 4785
8 TraesCS5A01G508000 chr4D 88.185 1278 82 31 4037 5298 491719119 491720343 0.000000e+00 1459
9 TraesCS5A01G508000 chr4D 89.068 311 14 10 5560 5858 491720553 491720855 1.030000e-97 368
10 TraesCS5A01G508000 chr4D 85.167 209 15 2 6265 6457 491720977 491721185 3.970000e-47 200
11 TraesCS5A01G508000 chr4B 93.540 3065 122 22 1001 4038 630632950 630635965 0.000000e+00 4494
12 TraesCS5A01G508000 chr4B 89.119 1158 54 27 4106 5252 630636573 630637669 0.000000e+00 1375
13 TraesCS5A01G508000 chr4B 88.785 214 14 8 5700 5906 630637928 630638138 3.000000e-63 254
14 TraesCS5A01G508000 chr4B 87.500 192 12 6 6265 6444 630638193 630638384 1.830000e-50 211
15 TraesCS5A01G508000 chr4B 95.122 82 4 0 4037 4118 630636043 630636124 5.280000e-26 130
16 TraesCS5A01G508000 chrUn 85.465 688 71 20 3015 3685 49245440 49244765 0.000000e+00 689
17 TraesCS5A01G508000 chrUn 87.332 371 32 7 160 524 343337958 343337597 1.680000e-110 411
18 TraesCS5A01G508000 chr1B 85.556 540 40 20 1 524 113877518 113878035 1.240000e-146 531
19 TraesCS5A01G508000 chr1B 86.523 371 32 7 162 524 57505491 57505131 6.100000e-105 392
20 TraesCS5A01G508000 chr3D 83.152 552 55 19 1 528 537905877 537905340 2.740000e-128 470
21 TraesCS5A01G508000 chr1A 91.279 344 22 5 192 532 49148084 49147746 4.580000e-126 462
22 TraesCS5A01G508000 chr1A 90.506 158 9 3 1 152 49148243 49148086 3.070000e-48 204
23 TraesCS5A01G508000 chr5D 88.503 374 25 9 160 524 492176839 492176475 2.780000e-118 436
24 TraesCS5A01G508000 chr2B 86.216 370 34 7 162 524 499165164 499165523 1.020000e-102 385
25 TraesCS5A01G508000 chr7A 88.276 290 22 7 1 282 663743192 663742907 2.900000e-88 337


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G508000 chr5A 672338099 672344584 6485 True 3569.666667 9121 100.0000 1 6486 3 chr5A.!!$R4 6485
1 TraesCS5A01G508000 chr5A 353610987 353611516 529 True 678.000000 678 89.9250 1 529 1 chr5A.!!$R2 528
2 TraesCS5A01G508000 chr4D 491716008 491721185 5177 False 1703.000000 4785 89.3850 1001 6457 4 chr4D.!!$F1 5456
3 TraesCS5A01G508000 chr4B 630632950 630638384 5434 False 1292.800000 4494 90.8132 1001 6444 5 chr4B.!!$F1 5443
4 TraesCS5A01G508000 chrUn 49244765 49245440 675 True 689.000000 689 85.4650 3015 3685 1 chrUn.!!$R1 670
5 TraesCS5A01G508000 chr1B 113877518 113878035 517 False 531.000000 531 85.5560 1 524 1 chr1B.!!$F1 523
6 TraesCS5A01G508000 chr3D 537905340 537905877 537 True 470.000000 470 83.1520 1 528 1 chr3D.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 665 0.037975 AGTTGGGTACGCGTACAAGG 60.038 55.000 40.57 0.97 37.78 3.61 F
635 666 0.038343 GTTGGGTACGCGTACAAGGA 60.038 55.000 40.57 24.74 37.78 3.36 F
1140 1179 0.456995 CAGGTCCGTTCGCTCTTCTC 60.457 60.000 0.00 0.00 0.00 2.87 F
1849 1899 0.323957 GGAACTCTTAGGTGGGCGTT 59.676 55.000 0.00 0.00 0.00 4.84 F
2800 2850 0.411452 TTATGCATGTTGGGGTGGGT 59.589 50.000 10.16 0.00 0.00 4.51 F
3406 3464 0.872388 CCTGTTTCCGCCTACACAAC 59.128 55.000 0.00 0.00 0.00 3.32 F
4925 5570 1.075305 GGGTAAAAAGGGACCCGCA 59.925 57.895 4.40 0.00 45.86 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 1689 0.315251 GGAGGTTGCTTGGTTTGCTC 59.685 55.0 0.00 0.00 0.00 4.26 R
1760 1809 1.078709 ACATTGCACGGAACTCATCG 58.921 50.0 0.00 0.00 0.00 3.84 R
3031 3081 0.261991 AGGTCCGAAGAGCAGGGATA 59.738 55.0 0.00 0.00 43.21 2.59 R
3798 3868 0.473755 TGCCTCTGCAACTCCAAAGA 59.526 50.0 0.00 0.00 46.66 2.52 R
4649 5291 0.462581 GATGCACCGGAGATTCAGCA 60.463 55.0 9.46 6.78 36.34 4.41 R
5099 5753 0.039798 CATGGCAGCAACAGACACAC 60.040 55.0 0.00 0.00 0.00 3.82 R
5861 6568 0.042731 TGGGGGAGACGGAAGAGAAT 59.957 55.0 0.00 0.00 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 1.615883 TGGCTGAGTTGTCTCTCTGTC 59.384 52.381 0.00 0.00 40.98 3.51
42 44 1.067213 GGCTGAGTTGTCTCTCTGTCC 60.067 57.143 0.00 0.00 40.98 4.02
43 45 1.615883 GCTGAGTTGTCTCTCTGTCCA 59.384 52.381 0.00 0.00 40.98 4.02
108 115 2.014857 CCGATCGATCTATCCGGCTAA 58.985 52.381 22.43 0.00 0.00 3.09
111 118 3.440228 GATCGATCTATCCGGCTAAAGC 58.560 50.000 18.29 0.00 41.14 3.51
135 142 4.260456 GGCGCACATACACGTACAAATTAT 60.260 41.667 10.83 0.00 0.00 1.28
245 266 8.786838 TCTATACAGATCCTTCCTAGCATCTAT 58.213 37.037 0.00 0.00 0.00 1.98
249 270 7.245292 ACAGATCCTTCCTAGCATCTATTAGT 58.755 38.462 0.00 0.00 0.00 2.24
262 283 6.496565 AGCATCTATTAGTAGAGAACATGCCT 59.503 38.462 11.87 0.00 40.16 4.75
291 312 3.014036 CATGCATACGGTGGCGAC 58.986 61.111 0.00 0.00 0.00 5.19
317 338 5.059161 GCATAAGCTGATCCATGAGTGTAA 58.941 41.667 0.00 0.00 37.91 2.41
320 349 7.952445 GCATAAGCTGATCCATGAGTGTAACTA 60.952 40.741 0.00 0.00 43.21 2.24
360 389 7.086230 ACGTAACAATCTGTGTAAACCAAAA 57.914 32.000 0.00 0.00 40.60 2.44
361 390 7.536855 ACGTAACAATCTGTGTAAACCAAAAA 58.463 30.769 0.00 0.00 40.60 1.94
389 418 7.696992 AAAACTGAGAAAAACTACCACTTGA 57.303 32.000 0.00 0.00 0.00 3.02
425 454 6.183360 GGCGGTATTATCGAAACTGAGAAAAA 60.183 38.462 0.00 0.00 0.00 1.94
426 455 7.407337 GCGGTATTATCGAAACTGAGAAAAAT 58.593 34.615 0.00 0.00 0.00 1.82
427 456 7.583040 GCGGTATTATCGAAACTGAGAAAAATC 59.417 37.037 0.00 0.00 0.00 2.17
428 457 8.818057 CGGTATTATCGAAACTGAGAAAAATCT 58.182 33.333 0.00 0.00 0.00 2.40
483 513 7.719633 GCCCATCTATTGAAATACTGAGGTTTA 59.280 37.037 0.00 0.00 0.00 2.01
524 555 0.470766 ACGGTGTTGCCAAACTAGGA 59.529 50.000 0.00 0.00 37.19 2.94
529 560 3.751698 GGTGTTGCCAAACTAGGACTAAG 59.248 47.826 0.00 0.00 37.19 2.18
530 561 4.386711 GTGTTGCCAAACTAGGACTAAGT 58.613 43.478 0.00 0.00 37.19 2.24
531 562 4.820173 GTGTTGCCAAACTAGGACTAAGTT 59.180 41.667 0.00 0.00 37.19 2.66
532 563 4.819630 TGTTGCCAAACTAGGACTAAGTTG 59.180 41.667 0.00 0.00 37.19 3.16
533 564 4.967084 TGCCAAACTAGGACTAAGTTGA 57.033 40.909 0.00 0.00 0.00 3.18
534 565 4.638304 TGCCAAACTAGGACTAAGTTGAC 58.362 43.478 0.00 0.00 0.00 3.18
535 566 4.101898 TGCCAAACTAGGACTAAGTTGACA 59.898 41.667 0.00 0.00 0.00 3.58
536 567 5.061179 GCCAAACTAGGACTAAGTTGACAA 58.939 41.667 0.00 0.00 0.00 3.18
537 568 5.705905 GCCAAACTAGGACTAAGTTGACAAT 59.294 40.000 0.00 0.00 0.00 2.71
538 569 6.348540 GCCAAACTAGGACTAAGTTGACAATG 60.349 42.308 0.00 0.00 0.00 2.82
539 570 6.934645 CCAAACTAGGACTAAGTTGACAATGA 59.065 38.462 0.00 0.00 0.00 2.57
540 571 7.118390 CCAAACTAGGACTAAGTTGACAATGAG 59.882 40.741 0.00 0.00 0.00 2.90
541 572 7.540474 AACTAGGACTAAGTTGACAATGAGA 57.460 36.000 0.00 0.00 0.00 3.27
542 573 7.540474 ACTAGGACTAAGTTGACAATGAGAA 57.460 36.000 0.00 0.00 0.00 2.87
543 574 7.379750 ACTAGGACTAAGTTGACAATGAGAAC 58.620 38.462 0.00 0.00 0.00 3.01
544 575 6.174720 AGGACTAAGTTGACAATGAGAACA 57.825 37.500 0.00 0.00 0.00 3.18
545 576 6.773638 AGGACTAAGTTGACAATGAGAACAT 58.226 36.000 0.00 0.00 38.50 2.71
546 577 7.907389 AGGACTAAGTTGACAATGAGAACATA 58.093 34.615 0.00 0.00 35.50 2.29
547 578 8.543774 AGGACTAAGTTGACAATGAGAACATAT 58.456 33.333 0.00 0.00 35.50 1.78
548 579 8.607459 GGACTAAGTTGACAATGAGAACATATG 58.393 37.037 0.00 0.00 35.50 1.78
549 580 9.371136 GACTAAGTTGACAATGAGAACATATGA 57.629 33.333 10.38 0.00 35.50 2.15
550 581 9.896645 ACTAAGTTGACAATGAGAACATATGAT 57.103 29.630 10.38 0.00 35.50 2.45
553 584 7.478322 AGTTGACAATGAGAACATATGATTGC 58.522 34.615 10.38 5.83 35.50 3.56
554 585 6.381481 TGACAATGAGAACATATGATTGCC 57.619 37.500 10.38 1.85 35.50 4.52
555 586 5.887035 TGACAATGAGAACATATGATTGCCA 59.113 36.000 10.38 4.49 35.50 4.92
556 587 6.140303 ACAATGAGAACATATGATTGCCAC 57.860 37.500 10.38 0.00 35.50 5.01
557 588 5.889853 ACAATGAGAACATATGATTGCCACT 59.110 36.000 10.38 0.00 35.50 4.00
558 589 6.039047 ACAATGAGAACATATGATTGCCACTC 59.961 38.462 10.38 0.92 35.50 3.51
559 590 5.363562 TGAGAACATATGATTGCCACTCT 57.636 39.130 10.38 0.00 0.00 3.24
560 591 5.121105 TGAGAACATATGATTGCCACTCTG 58.879 41.667 10.38 0.00 0.00 3.35
561 592 4.458397 AGAACATATGATTGCCACTCTGG 58.542 43.478 10.38 0.00 41.55 3.86
562 593 3.939740 ACATATGATTGCCACTCTGGT 57.060 42.857 10.38 0.00 40.46 4.00
563 594 3.548770 ACATATGATTGCCACTCTGGTG 58.451 45.455 10.38 0.00 40.46 4.17
574 605 3.407424 CACTCTGGTGGTCTTGATTCA 57.593 47.619 0.00 0.00 39.59 2.57
575 606 3.947868 CACTCTGGTGGTCTTGATTCAT 58.052 45.455 0.00 0.00 39.59 2.57
576 607 5.089970 CACTCTGGTGGTCTTGATTCATA 57.910 43.478 0.00 0.00 39.59 2.15
577 608 4.872691 CACTCTGGTGGTCTTGATTCATAC 59.127 45.833 0.00 0.00 39.59 2.39
578 609 4.532126 ACTCTGGTGGTCTTGATTCATACA 59.468 41.667 0.00 0.00 0.00 2.29
579 610 5.190528 ACTCTGGTGGTCTTGATTCATACAT 59.809 40.000 0.00 0.00 0.00 2.29
580 611 5.430886 TCTGGTGGTCTTGATTCATACATG 58.569 41.667 0.00 0.00 0.00 3.21
581 612 5.045651 TCTGGTGGTCTTGATTCATACATGT 60.046 40.000 2.69 2.69 0.00 3.21
582 613 5.569355 TGGTGGTCTTGATTCATACATGTT 58.431 37.500 2.30 0.00 0.00 2.71
583 614 5.415389 TGGTGGTCTTGATTCATACATGTTG 59.585 40.000 2.30 2.55 0.00 3.33
584 615 5.335127 GTGGTCTTGATTCATACATGTTGC 58.665 41.667 2.30 0.00 0.00 4.17
585 616 5.124457 GTGGTCTTGATTCATACATGTTGCT 59.876 40.000 2.30 0.00 0.00 3.91
586 617 5.355071 TGGTCTTGATTCATACATGTTGCTC 59.645 40.000 2.30 4.10 0.00 4.26
587 618 5.220931 GGTCTTGATTCATACATGTTGCTCC 60.221 44.000 2.30 0.00 0.00 4.70
588 619 4.883585 TCTTGATTCATACATGTTGCTCCC 59.116 41.667 2.30 0.00 0.00 4.30
589 620 4.508551 TGATTCATACATGTTGCTCCCT 57.491 40.909 2.30 0.00 0.00 4.20
590 621 4.454678 TGATTCATACATGTTGCTCCCTC 58.545 43.478 2.30 0.00 0.00 4.30
591 622 2.602257 TCATACATGTTGCTCCCTCG 57.398 50.000 2.30 0.00 0.00 4.63
592 623 1.831106 TCATACATGTTGCTCCCTCGT 59.169 47.619 2.30 0.00 0.00 4.18
593 624 1.935873 CATACATGTTGCTCCCTCGTG 59.064 52.381 2.30 0.00 0.00 4.35
594 625 0.249120 TACATGTTGCTCCCTCGTGG 59.751 55.000 2.30 0.00 0.00 4.94
605 636 3.558674 CCTCGTGGGAGCAATCTTT 57.441 52.632 0.00 0.00 39.06 2.52
606 637 1.826385 CCTCGTGGGAGCAATCTTTT 58.174 50.000 0.00 0.00 39.06 2.27
607 638 2.985896 CCTCGTGGGAGCAATCTTTTA 58.014 47.619 0.00 0.00 39.06 1.52
608 639 2.678336 CCTCGTGGGAGCAATCTTTTAC 59.322 50.000 0.00 0.00 39.06 2.01
609 640 3.334691 CTCGTGGGAGCAATCTTTTACA 58.665 45.455 0.00 0.00 32.61 2.41
610 641 3.334691 TCGTGGGAGCAATCTTTTACAG 58.665 45.455 0.00 0.00 0.00 2.74
611 642 3.007506 TCGTGGGAGCAATCTTTTACAGA 59.992 43.478 0.00 0.00 35.33 3.41
612 643 3.941483 CGTGGGAGCAATCTTTTACAGAT 59.059 43.478 0.00 0.00 45.03 2.90
613 644 5.105106 TCGTGGGAGCAATCTTTTACAGATA 60.105 40.000 0.00 0.00 41.93 1.98
614 645 5.584649 CGTGGGAGCAATCTTTTACAGATAA 59.415 40.000 0.00 0.00 41.93 1.75
615 646 6.093495 CGTGGGAGCAATCTTTTACAGATAAA 59.907 38.462 0.00 0.00 41.93 1.40
616 647 7.475840 GTGGGAGCAATCTTTTACAGATAAAG 58.524 38.462 0.00 0.00 41.93 1.85
617 648 7.121315 GTGGGAGCAATCTTTTACAGATAAAGT 59.879 37.037 0.00 0.00 41.93 2.66
618 649 7.669722 TGGGAGCAATCTTTTACAGATAAAGTT 59.330 33.333 0.00 0.00 41.93 2.66
619 650 7.970614 GGGAGCAATCTTTTACAGATAAAGTTG 59.029 37.037 0.00 0.00 41.93 3.16
620 651 7.970614 GGAGCAATCTTTTACAGATAAAGTTGG 59.029 37.037 0.00 0.00 41.93 3.77
621 652 7.830739 AGCAATCTTTTACAGATAAAGTTGGG 58.169 34.615 0.00 0.00 41.93 4.12
622 653 7.451566 AGCAATCTTTTACAGATAAAGTTGGGT 59.548 33.333 0.00 0.00 41.93 4.51
623 654 8.736244 GCAATCTTTTACAGATAAAGTTGGGTA 58.264 33.333 0.00 0.00 41.93 3.69
625 656 7.894376 TCTTTTACAGATAAAGTTGGGTACG 57.106 36.000 0.00 0.00 34.86 3.67
626 657 6.369615 TCTTTTACAGATAAAGTTGGGTACGC 59.630 38.462 2.35 2.35 34.86 4.42
627 658 2.613691 ACAGATAAAGTTGGGTACGCG 58.386 47.619 3.53 3.53 0.00 6.01
628 659 2.028748 ACAGATAAAGTTGGGTACGCGT 60.029 45.455 19.17 19.17 0.00 6.01
629 660 3.193267 ACAGATAAAGTTGGGTACGCGTA 59.807 43.478 16.41 16.41 0.00 4.42
630 661 3.549070 CAGATAAAGTTGGGTACGCGTAC 59.451 47.826 35.42 35.42 35.40 3.67
631 662 3.193267 AGATAAAGTTGGGTACGCGTACA 59.807 43.478 40.57 24.97 37.78 2.90
632 663 2.237393 AAAGTTGGGTACGCGTACAA 57.763 45.000 40.57 28.52 37.78 2.41
633 664 1.787012 AAGTTGGGTACGCGTACAAG 58.213 50.000 40.57 1.77 37.78 3.16
634 665 0.037975 AGTTGGGTACGCGTACAAGG 60.038 55.000 40.57 0.97 37.78 3.61
635 666 0.038343 GTTGGGTACGCGTACAAGGA 60.038 55.000 40.57 24.74 37.78 3.36
636 667 0.896923 TTGGGTACGCGTACAAGGAT 59.103 50.000 40.57 9.27 37.78 3.24
1020 1051 2.440247 CGGCCCCTCCAATCCAAC 60.440 66.667 0.00 0.00 34.01 3.77
1024 1055 2.689813 CCCTCCAATCCAACCCCC 59.310 66.667 0.00 0.00 0.00 5.40
1052 1089 4.124943 TCCTCCTCGTCCCCCTCG 62.125 72.222 0.00 0.00 0.00 4.63
1088 1125 2.822399 CGGAAGGAATCTCCCCGG 59.178 66.667 0.00 0.00 37.19 5.73
1089 1126 2.511403 GGAAGGAATCTCCCCGGC 59.489 66.667 0.00 0.00 37.19 6.13
1090 1127 2.511403 GAAGGAATCTCCCCGGCC 59.489 66.667 0.00 0.00 37.19 6.13
1091 1128 3.462199 GAAGGAATCTCCCCGGCCG 62.462 68.421 21.04 21.04 37.19 6.13
1140 1179 0.456995 CAGGTCCGTTCGCTCTTCTC 60.457 60.000 0.00 0.00 0.00 2.87
1149 1188 4.117661 GCTCTTCTCGCCGTCCGT 62.118 66.667 0.00 0.00 38.35 4.69
1166 1209 1.067212 CCGTAGATTCGGTTCCTCTGG 59.933 57.143 0.00 0.00 44.77 3.86
1169 1212 1.196012 AGATTCGGTTCCTCTGGTCC 58.804 55.000 0.00 0.00 0.00 4.46
1200 1243 1.470979 CGAGATTCACCGATTCCCGTT 60.471 52.381 0.00 0.00 36.31 4.44
1203 1246 0.909623 ATTCACCGATTCCCGTTCCT 59.090 50.000 0.00 0.00 36.31 3.36
1252 1298 0.909623 TTTGGAATCGTCCTCCCTCC 59.090 55.000 0.00 0.00 45.22 4.30
1262 1308 4.154347 CTCCCTCCAGGCGTCTGC 62.154 72.222 12.68 0.00 39.61 4.26
1299 1345 1.134946 CAATTCGGTTGGATTCCTGCC 59.865 52.381 3.95 5.27 34.06 4.85
1339 1385 2.997897 GGTGCCCGACCTGAGAGT 60.998 66.667 0.00 0.00 42.25 3.24
1341 1387 3.695606 TGCCCGACCTGAGAGTGC 61.696 66.667 0.00 0.00 0.00 4.40
1366 1412 2.668632 GGAGTTGATGCCACCCGA 59.331 61.111 0.00 0.00 0.00 5.14
1602 1651 3.948719 TGGAAGGACACCCACGGC 61.949 66.667 0.00 0.00 33.88 5.68
1667 1716 1.675641 AAGCAACCTCCGTGCATCC 60.676 57.895 0.00 0.00 44.74 3.51
1679 1728 5.707298 CCTCCGTGCATCCTTTCAATATTAT 59.293 40.000 0.00 0.00 0.00 1.28
1702 1751 1.313772 TTGTGCTGCCGTAAATGTGT 58.686 45.000 0.00 0.00 0.00 3.72
1705 1754 2.224549 TGTGCTGCCGTAAATGTGTTAC 59.775 45.455 0.00 0.00 0.00 2.50
1711 1760 5.236478 GCTGCCGTAAATGTGTTACATAGAT 59.764 40.000 0.00 0.00 37.97 1.98
1715 1764 6.457663 GCCGTAAATGTGTTACATAGATGCAA 60.458 38.462 0.00 0.00 37.97 4.08
1760 1809 3.730761 GATGCCGATGCCGATGCC 61.731 66.667 0.00 0.00 38.22 4.40
1771 1820 1.951130 CCGATGCCGATGAGTTCCG 60.951 63.158 0.00 0.00 38.22 4.30
1775 1824 2.434185 GCCGATGAGTTCCGTGCA 60.434 61.111 0.00 0.00 0.00 4.57
1849 1899 0.323957 GGAACTCTTAGGTGGGCGTT 59.676 55.000 0.00 0.00 0.00 4.84
1991 2041 3.575256 TCACAATCTGCCAATTTCAGCTT 59.425 39.130 0.00 0.00 0.00 3.74
2149 2199 2.814913 AAATTCACCCCGAGTCCGCC 62.815 60.000 0.00 0.00 0.00 6.13
2173 2223 6.811665 CCGTGAACTGATTAGACAGAAACATA 59.188 38.462 0.00 0.00 40.63 2.29
2230 2280 1.720852 GGTGTTGCAAAATGATCGCAC 59.279 47.619 0.00 2.06 34.87 5.34
2333 2383 6.903516 TGATGTATCAAGGACTGGAAATGAT 58.096 36.000 0.00 0.00 33.08 2.45
2355 2405 3.103742 ACAGCCCTTCAAAGTGGAAAAA 58.896 40.909 2.57 0.00 0.00 1.94
2462 2512 8.610035 GTGTATTGGTCTAGTATTACTTTTGGC 58.390 37.037 0.85 0.00 0.00 4.52
2464 2514 9.338622 GTATTGGTCTAGTATTACTTTTGGCAT 57.661 33.333 0.85 0.00 0.00 4.40
2516 2566 2.939103 GCTGTCATATGTGAAGGTGGTC 59.061 50.000 1.90 0.00 35.80 4.02
2536 2586 6.874134 GTGGTCTGTATATGTTTCTCAGTTGT 59.126 38.462 0.00 0.00 0.00 3.32
2800 2850 0.411452 TTATGCATGTTGGGGTGGGT 59.589 50.000 10.16 0.00 0.00 4.51
2809 2859 1.136961 TTGGGGTGGGTCTGCACATA 61.137 55.000 0.00 0.00 0.00 2.29
2856 2906 6.615264 ATCGAACATCTGATTCCTCAAATG 57.385 37.500 0.00 0.00 36.17 2.32
2934 2984 9.603921 ATTTATCTTCAGTAAATTGGGCAATTG 57.396 29.630 0.00 0.00 40.57 2.32
2950 3000 8.445275 TGGGCAATTGTACATTATACTGTTAG 57.555 34.615 7.40 0.00 0.00 2.34
2974 3024 3.850173 AGCTAAAGTGGAAACCTATCCCA 59.150 43.478 0.00 0.00 38.82 4.37
2985 3035 2.781667 ACCTATCCCATTCAGAAGCCT 58.218 47.619 0.00 0.00 0.00 4.58
2996 3046 4.193653 GAAGCCTCTCTTCCACGC 57.806 61.111 0.00 0.00 44.22 5.34
3002 3052 1.984570 CTCTCTTCCACGCCAGGGA 60.985 63.158 0.00 0.00 0.00 4.20
3031 3081 2.438021 TGTCACTGTTTTCTAGTGCCCT 59.562 45.455 0.00 0.00 43.97 5.19
3064 3114 1.415289 CGGACCTTTACCCTACCCATC 59.585 57.143 0.00 0.00 0.00 3.51
3066 3116 3.053826 GGACCTTTACCCTACCCATCAT 58.946 50.000 0.00 0.00 0.00 2.45
3089 3139 7.816031 TCATGTAGACTTCGTTAAAAACCTAGG 59.184 37.037 7.41 7.41 0.00 3.02
3236 3287 8.260270 ACAGGAAATGTTTAACTTATCCGTAC 57.740 34.615 0.00 0.00 39.96 3.67
3375 3429 4.122776 CCCTATGAATTGAGGACAGTTCG 58.877 47.826 0.00 0.00 42.83 3.95
3406 3464 0.872388 CCTGTTTCCGCCTACACAAC 59.128 55.000 0.00 0.00 0.00 3.32
3744 3814 3.059884 CTCATTTGTCGCACTGTGTAGT 58.940 45.455 9.86 0.00 37.75 2.73
3798 3868 5.656213 ACACGAGCAGTACCTTTTATAGT 57.344 39.130 0.00 0.00 0.00 2.12
3933 4003 4.335594 AGTTGTCTTTCTTTGTACTGGCAC 59.664 41.667 0.00 0.00 0.00 5.01
4106 4261 6.875926 GTGAAACTTGTTGGCATATGATTC 57.124 37.500 6.97 0.00 0.00 2.52
4113 4738 4.965814 TGTTGGCATATGATTCTCTCTCC 58.034 43.478 6.97 0.00 0.00 3.71
4114 4739 4.202398 TGTTGGCATATGATTCTCTCTCCC 60.202 45.833 6.97 0.00 0.00 4.30
4115 4740 3.866816 TGGCATATGATTCTCTCTCCCT 58.133 45.455 6.97 0.00 0.00 4.20
4116 4741 3.837146 TGGCATATGATTCTCTCTCCCTC 59.163 47.826 6.97 0.00 0.00 4.30
4117 4742 4.095946 GGCATATGATTCTCTCTCCCTCT 58.904 47.826 6.97 0.00 0.00 3.69
4118 4743 4.160252 GGCATATGATTCTCTCTCCCTCTC 59.840 50.000 6.97 0.00 0.00 3.20
4119 4744 4.160252 GCATATGATTCTCTCTCCCTCTCC 59.840 50.000 6.97 0.00 0.00 3.71
4120 4745 2.765689 TGATTCTCTCTCCCTCTCCC 57.234 55.000 0.00 0.00 0.00 4.30
4151 4776 6.480320 CAGTATATTTACTTCACCTGACTGCC 59.520 42.308 0.00 0.00 36.50 4.85
4203 4828 3.927142 CGGAGATCAGTTTACAGTTCCAC 59.073 47.826 0.00 0.00 0.00 4.02
4213 4838 6.534793 CAGTTTACAGTTCCACATTTTGCTTT 59.465 34.615 0.00 0.00 0.00 3.51
4256 4884 1.539157 AGGCTTTAGAAGTTGCAGGC 58.461 50.000 0.00 0.00 0.00 4.85
4304 4932 3.254166 GTCTTTCTTTCTGCTGGCATCAA 59.746 43.478 0.00 0.00 0.00 2.57
4331 4959 4.119862 CAGTAGAATCCACATTGGGTACG 58.880 47.826 0.00 0.00 38.32 3.67
4343 4972 4.627058 CATTGGGTACGATGTATGTGCTA 58.373 43.478 0.00 0.00 34.38 3.49
4423 5052 2.092212 ACCCCATGCATCTAAAGAGGTG 60.092 50.000 0.00 0.00 36.82 4.00
4437 5066 8.445361 TCTAAAGAGGTGGTATCTAAAAAGGT 57.555 34.615 0.00 0.00 0.00 3.50
4439 5068 6.954352 AAGAGGTGGTATCTAAAAAGGTCT 57.046 37.500 0.00 0.00 0.00 3.85
4441 5070 6.023603 AGAGGTGGTATCTAAAAAGGTCTCA 58.976 40.000 0.00 0.00 0.00 3.27
4445 5074 6.318900 GGTGGTATCTAAAAAGGTCTCATTGG 59.681 42.308 0.00 0.00 0.00 3.16
4451 5080 6.231211 TCTAAAAAGGTCTCATTGGACTGTC 58.769 40.000 0.00 0.00 36.55 3.51
4481 5110 4.277476 TGGTTGTTCAAGAAAGTCCATGT 58.723 39.130 0.00 0.00 0.00 3.21
4492 5121 4.042809 AGAAAGTCCATGTACCCATCACAA 59.957 41.667 0.00 0.00 0.00 3.33
4493 5122 3.634397 AGTCCATGTACCCATCACAAG 57.366 47.619 0.00 0.00 0.00 3.16
4494 5123 3.181329 AGTCCATGTACCCATCACAAGA 58.819 45.455 0.00 0.00 0.00 3.02
4495 5124 3.587061 AGTCCATGTACCCATCACAAGAA 59.413 43.478 0.00 0.00 0.00 2.52
4558 5190 3.139850 CCTCTAATTGCTCTGCCATCTG 58.860 50.000 0.00 0.00 0.00 2.90
4560 5192 4.197750 CTCTAATTGCTCTGCCATCTGTT 58.802 43.478 0.00 0.00 0.00 3.16
4561 5193 4.592942 TCTAATTGCTCTGCCATCTGTTT 58.407 39.130 0.00 0.00 0.00 2.83
4562 5194 5.012239 TCTAATTGCTCTGCCATCTGTTTT 58.988 37.500 0.00 0.00 0.00 2.43
4563 5195 4.612264 AATTGCTCTGCCATCTGTTTTT 57.388 36.364 0.00 0.00 0.00 1.94
4644 5286 8.625786 TGCATATGCTCAGTCATGTAAATATT 57.374 30.769 27.13 0.00 42.66 1.28
4649 5291 5.882000 TGCTCAGTCATGTAAATATTGCAGT 59.118 36.000 0.00 0.00 0.00 4.40
4888 5531 6.595326 AGTTGCGTCAGAATTTTGAGATATCA 59.405 34.615 5.32 0.00 0.00 2.15
4910 5553 2.487265 CCACACAGCAGTTAGAAAGGGT 60.487 50.000 0.00 0.00 0.00 4.34
4916 5559 6.039382 ACACAGCAGTTAGAAAGGGTAAAAAG 59.961 38.462 0.00 0.00 0.00 2.27
4925 5570 1.075305 GGGTAAAAAGGGACCCGCA 59.925 57.895 4.40 0.00 45.86 5.69
5023 5669 3.690280 CGGGCATTTTTGCGGGGT 61.690 61.111 0.00 0.00 35.24 4.95
5095 5749 5.078411 ACTAACTAGCTGATGTTCCTGTG 57.922 43.478 0.00 0.00 0.00 3.66
5099 5753 1.888215 AGCTGATGTTCCTGTGTGTG 58.112 50.000 0.00 0.00 0.00 3.82
5100 5754 1.141657 AGCTGATGTTCCTGTGTGTGT 59.858 47.619 0.00 0.00 0.00 3.72
5101 5755 1.265095 GCTGATGTTCCTGTGTGTGTG 59.735 52.381 0.00 0.00 0.00 3.82
5102 5756 2.564771 CTGATGTTCCTGTGTGTGTGT 58.435 47.619 0.00 0.00 0.00 3.72
5108 5762 0.901827 TCCTGTGTGTGTGTGTCTGT 59.098 50.000 0.00 0.00 0.00 3.41
5114 5768 0.248215 GTGTGTGTGTCTGTTGCTGC 60.248 55.000 0.00 0.00 0.00 5.25
5118 5772 0.039798 GTGTGTCTGTTGCTGCCATG 60.040 55.000 0.00 0.00 0.00 3.66
5124 5778 2.191354 CTGTTGCTGCCATGACACGG 62.191 60.000 0.00 0.00 0.00 4.94
5136 5790 5.034152 GCCATGACACGGTTAACATTATTG 58.966 41.667 8.10 0.00 0.00 1.90
5153 5807 9.438228 AACATTATTGTTGCATGAATTGATTGA 57.562 25.926 0.00 0.00 44.36 2.57
5202 5856 3.023119 AGTGCAAGGTTTGTCACATTCA 58.977 40.909 14.22 0.00 38.93 2.57
5226 5880 2.611225 CCCTATCAGGCAGTTCACTC 57.389 55.000 0.00 0.00 32.73 3.51
5228 5882 2.503356 CCCTATCAGGCAGTTCACTCTT 59.497 50.000 0.00 0.00 32.73 2.85
5272 5926 7.553881 TTTTTCTTCTCCGGCAGAATATAAG 57.446 36.000 14.22 5.44 40.55 1.73
5298 5955 4.222810 TGCTCAGAGCTCAGTAATTTACCA 59.777 41.667 23.15 0.00 42.97 3.25
5300 5957 5.625656 GCTCAGAGCTCAGTAATTTACCACT 60.626 44.000 17.77 0.00 38.45 4.00
5302 5959 6.398918 TCAGAGCTCAGTAATTTACCACTTC 58.601 40.000 17.77 0.00 0.00 3.01
5303 5960 5.582665 CAGAGCTCAGTAATTTACCACTTCC 59.417 44.000 17.77 0.00 0.00 3.46
5305 5962 5.735766 AGCTCAGTAATTTACCACTTCCTC 58.264 41.667 2.92 0.00 0.00 3.71
5306 5963 5.485708 AGCTCAGTAATTTACCACTTCCTCT 59.514 40.000 2.92 0.00 0.00 3.69
5307 5964 5.582665 GCTCAGTAATTTACCACTTCCTCTG 59.417 44.000 2.92 0.00 0.00 3.35
5309 5966 5.248477 TCAGTAATTTACCACTTCCTCTGCT 59.752 40.000 2.92 0.00 0.00 4.24
5310 5967 5.582665 CAGTAATTTACCACTTCCTCTGCTC 59.417 44.000 2.92 0.00 0.00 4.26
5311 5968 4.640771 AATTTACCACTTCCTCTGCTCA 57.359 40.909 0.00 0.00 0.00 4.26
5312 5969 4.851639 ATTTACCACTTCCTCTGCTCAT 57.148 40.909 0.00 0.00 0.00 2.90
5316 5973 4.851639 ACCACTTCCTCTGCTCATAAAT 57.148 40.909 0.00 0.00 0.00 1.40
5318 5975 6.506538 ACCACTTCCTCTGCTCATAAATAT 57.493 37.500 0.00 0.00 0.00 1.28
5321 5978 8.153550 ACCACTTCCTCTGCTCATAAATATAAG 58.846 37.037 0.00 0.00 0.00 1.73
5323 5980 9.941325 CACTTCCTCTGCTCATAAATATAAGAT 57.059 33.333 0.00 0.00 0.00 2.40
5324 5981 9.941325 ACTTCCTCTGCTCATAAATATAAGATG 57.059 33.333 0.00 0.00 0.00 2.90
5325 5982 9.941325 CTTCCTCTGCTCATAAATATAAGATGT 57.059 33.333 0.00 0.00 0.00 3.06
5372 6029 9.052759 ACGTTATTTACAAGTCTCAAAATGTCT 57.947 29.630 0.00 0.00 0.00 3.41
5373 6030 9.878599 CGTTATTTACAAGTCTCAAAATGTCTT 57.121 29.630 0.00 0.00 0.00 3.01
5436 6093 3.582714 CACTCTGTCTGTGTGCTGATA 57.417 47.619 0.00 0.00 34.12 2.15
5437 6094 4.120792 CACTCTGTCTGTGTGCTGATAT 57.879 45.455 0.00 0.00 34.12 1.63
5439 6096 4.329256 CACTCTGTCTGTGTGCTGATATTG 59.671 45.833 0.00 0.00 34.12 1.90
5441 6098 4.248058 TCTGTCTGTGTGCTGATATTGTG 58.752 43.478 0.00 0.00 0.00 3.33
5443 6100 5.047377 TCTGTCTGTGTGCTGATATTGTGTA 60.047 40.000 0.00 0.00 0.00 2.90
5444 6101 5.546526 TGTCTGTGTGCTGATATTGTGTAA 58.453 37.500 0.00 0.00 0.00 2.41
5445 6102 5.994668 TGTCTGTGTGCTGATATTGTGTAAA 59.005 36.000 0.00 0.00 0.00 2.01
5447 6104 7.148423 TGTCTGTGTGCTGATATTGTGTAAATC 60.148 37.037 0.00 0.00 0.00 2.17
5449 6106 7.064966 TCTGTGTGCTGATATTGTGTAAATCAG 59.935 37.037 7.10 7.10 46.11 2.90
5450 6107 6.654582 TGTGTGCTGATATTGTGTAAATCAGT 59.345 34.615 11.86 0.00 45.45 3.41
5470 6135 7.334844 TCAGTATCCTGACATGTGTAACTAG 57.665 40.000 1.15 0.00 42.80 2.57
5514 6205 9.187455 CTACGCACACAAAAAGGTTTATTTTAT 57.813 29.630 0.00 0.00 32.20 1.40
5515 6206 8.426881 ACGCACACAAAAAGGTTTATTTTATT 57.573 26.923 0.00 0.00 32.20 1.40
5516 6207 9.530633 ACGCACACAAAAAGGTTTATTTTATTA 57.469 25.926 0.00 0.00 32.20 0.98
5616 6310 3.449227 CCACAGGCCTGCATGCAG 61.449 66.667 35.88 35.88 43.26 4.41
5617 6311 2.675423 CACAGGCCTGCATGCAGT 60.675 61.111 38.22 22.73 42.15 4.40
5640 6344 2.913765 CGCAATTCCCGCCACACAA 61.914 57.895 0.00 0.00 0.00 3.33
5643 6347 0.662970 CAATTCCCGCCACACAAACG 60.663 55.000 0.00 0.00 0.00 3.60
5648 6352 2.331098 CGCCACACAAACGCACAT 59.669 55.556 0.00 0.00 0.00 3.21
5708 6414 1.303309 GGATTCCTTGCTCCGTCATG 58.697 55.000 0.00 0.00 0.00 3.07
5817 6524 2.960688 AACGGCAGCTTCTCCCCTC 61.961 63.158 0.00 0.00 0.00 4.30
5818 6525 4.168291 CGGCAGCTTCTCCCCTCC 62.168 72.222 0.00 0.00 0.00 4.30
5858 6565 3.224269 CCTTCACTACTACTCCTAGCCC 58.776 54.545 0.00 0.00 0.00 5.19
5859 6566 3.372784 CCTTCACTACTACTCCTAGCCCA 60.373 52.174 0.00 0.00 0.00 5.36
5861 6568 2.579400 TCACTACTACTCCTAGCCCACA 59.421 50.000 0.00 0.00 0.00 4.17
5871 6588 1.202580 CCTAGCCCACATTCTCTTCCG 60.203 57.143 0.00 0.00 0.00 4.30
5898 6615 0.960364 CACCCCAAACATCCACCTCG 60.960 60.000 0.00 0.00 0.00 4.63
6416 7146 1.475213 GGTTCGATCCTTGTCCCATCC 60.475 57.143 5.21 0.00 0.00 3.51
6417 7147 0.464036 TTCGATCCTTGTCCCATCCG 59.536 55.000 0.00 0.00 0.00 4.18
6419 7149 1.686325 CGATCCTTGTCCCATCCGGT 61.686 60.000 0.00 0.00 0.00 5.28
6425 7155 1.002659 CTTGTCCCATCCGGTGTTACA 59.997 52.381 0.00 3.31 0.00 2.41
6428 7158 0.907704 TCCCATCCGGTGTTACAGCT 60.908 55.000 12.77 0.00 0.00 4.24
6429 7159 0.744414 CCCATCCGGTGTTACAGCTG 60.744 60.000 13.48 13.48 0.00 4.24
6444 7178 0.965439 AGCTGGTCTCACTCACTGAC 59.035 55.000 0.00 0.00 0.00 3.51
6457 7191 3.052082 CTGACCGGCTGCTGTTGG 61.052 66.667 0.00 3.67 0.00 3.77
6463 7197 3.512516 GGCTGCTGTTGGCCGATC 61.513 66.667 0.00 0.00 40.92 3.69
6464 7198 3.869272 GCTGCTGTTGGCCGATCG 61.869 66.667 8.51 8.51 40.92 3.69
6465 7199 2.125552 CTGCTGTTGGCCGATCGA 60.126 61.111 18.66 0.00 40.92 3.59
6466 7200 1.522355 CTGCTGTTGGCCGATCGAT 60.522 57.895 18.66 0.00 40.92 3.59
6467 7201 1.078497 TGCTGTTGGCCGATCGATT 60.078 52.632 18.66 0.00 40.92 3.34
6468 7202 0.676466 TGCTGTTGGCCGATCGATTT 60.676 50.000 18.66 0.00 40.92 2.17
6469 7203 0.028110 GCTGTTGGCCGATCGATTTC 59.972 55.000 18.66 3.42 34.27 2.17
6470 7204 0.301687 CTGTTGGCCGATCGATTTCG 59.698 55.000 18.66 0.00 41.45 3.46
6482 7216 6.230460 CGATCGATTTCGGTTTCATTTTTC 57.770 37.500 10.26 0.00 40.29 2.29
6483 7217 6.021596 CGATCGATTTCGGTTTCATTTTTCT 58.978 36.000 10.26 0.00 40.29 2.52
6484 7218 6.022251 CGATCGATTTCGGTTTCATTTTTCTG 60.022 38.462 10.26 0.00 40.29 3.02
6485 7219 5.457140 TCGATTTCGGTTTCATTTTTCTGG 58.543 37.500 0.00 0.00 40.29 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 7 4.935702 TCAGCCAACATTTCTCAGTTTTG 58.064 39.130 0.00 0.00 0.00 2.44
42 44 1.493950 GCGTCGATGGCCAGAAGATG 61.494 60.000 13.05 16.11 0.00 2.90
43 45 1.227380 GCGTCGATGGCCAGAAGAT 60.227 57.895 13.05 0.00 0.00 2.40
108 115 2.822418 TACGTGTATGTGCGCCGCTT 62.822 55.000 11.67 0.00 0.00 4.68
111 118 1.345660 TTGTACGTGTATGTGCGCCG 61.346 55.000 4.18 0.75 0.00 6.46
135 142 1.476845 TTCCAGCCGGCACTAAGTCA 61.477 55.000 31.54 0.02 0.00 3.41
245 266 3.861840 GCACAGGCATGTTCTCTACTAA 58.138 45.455 0.00 0.00 37.65 2.24
297 318 5.939764 AGTTACACTCATGGATCAGCTTA 57.060 39.130 0.00 0.00 0.00 3.09
317 338 3.689161 ACGTTGTTGCATGCATACATAGT 59.311 39.130 23.37 22.65 33.67 2.12
320 349 4.083057 TGTTACGTTGTTGCATGCATACAT 60.083 37.500 23.37 14.85 36.79 2.29
321 350 3.251004 TGTTACGTTGTTGCATGCATACA 59.749 39.130 23.37 23.22 0.00 2.29
381 410 1.663695 CGAGGTGTTTGTCAAGTGGT 58.336 50.000 0.00 0.00 0.00 4.16
524 555 9.896645 ATCATATGTTCTCATTGTCAACTTAGT 57.103 29.630 1.90 0.00 35.70 2.24
529 560 6.694411 GGCAATCATATGTTCTCATTGTCAAC 59.306 38.462 11.69 0.11 35.70 3.18
530 561 6.377712 TGGCAATCATATGTTCTCATTGTCAA 59.622 34.615 15.23 4.03 35.70 3.18
531 562 5.887035 TGGCAATCATATGTTCTCATTGTCA 59.113 36.000 14.14 14.14 35.70 3.58
532 563 6.039047 AGTGGCAATCATATGTTCTCATTGTC 59.961 38.462 10.28 10.28 35.70 3.18
533 564 5.889853 AGTGGCAATCATATGTTCTCATTGT 59.110 36.000 12.89 0.00 35.70 2.71
534 565 6.262496 AGAGTGGCAATCATATGTTCTCATTG 59.738 38.462 18.00 6.20 35.70 2.82
535 566 6.262496 CAGAGTGGCAATCATATGTTCTCATT 59.738 38.462 18.00 0.00 35.70 2.57
536 567 5.763698 CAGAGTGGCAATCATATGTTCTCAT 59.236 40.000 18.00 0.00 38.00 2.90
537 568 5.121105 CAGAGTGGCAATCATATGTTCTCA 58.879 41.667 18.00 0.00 0.00 3.27
538 569 4.514441 CCAGAGTGGCAATCATATGTTCTC 59.486 45.833 18.00 2.05 0.00 2.87
539 570 4.080129 ACCAGAGTGGCAATCATATGTTCT 60.080 41.667 18.00 0.00 42.67 3.01
540 571 4.036027 CACCAGAGTGGCAATCATATGTTC 59.964 45.833 18.00 0.00 42.67 3.18
541 572 3.949754 CACCAGAGTGGCAATCATATGTT 59.050 43.478 18.00 0.00 42.67 2.71
542 573 3.548770 CACCAGAGTGGCAATCATATGT 58.451 45.455 18.00 5.38 42.67 2.29
554 585 3.407424 TGAATCAAGACCACCAGAGTG 57.593 47.619 0.00 0.00 44.12 3.51
555 586 4.532126 TGTATGAATCAAGACCACCAGAGT 59.468 41.667 0.00 0.00 0.00 3.24
556 587 5.089970 TGTATGAATCAAGACCACCAGAG 57.910 43.478 0.00 0.00 0.00 3.35
557 588 5.045651 ACATGTATGAATCAAGACCACCAGA 60.046 40.000 0.00 0.00 0.00 3.86
558 589 5.188434 ACATGTATGAATCAAGACCACCAG 58.812 41.667 0.00 0.00 0.00 4.00
559 590 5.178096 ACATGTATGAATCAAGACCACCA 57.822 39.130 0.00 0.00 0.00 4.17
560 591 5.677091 GCAACATGTATGAATCAAGACCACC 60.677 44.000 0.00 0.00 0.00 4.61
561 592 5.124457 AGCAACATGTATGAATCAAGACCAC 59.876 40.000 0.00 0.00 0.00 4.16
562 593 5.255687 AGCAACATGTATGAATCAAGACCA 58.744 37.500 0.00 0.00 0.00 4.02
563 594 5.220931 GGAGCAACATGTATGAATCAAGACC 60.221 44.000 0.00 0.00 0.00 3.85
564 595 5.220931 GGGAGCAACATGTATGAATCAAGAC 60.221 44.000 0.00 0.00 0.00 3.01
565 596 4.883585 GGGAGCAACATGTATGAATCAAGA 59.116 41.667 0.00 0.00 0.00 3.02
566 597 4.885907 AGGGAGCAACATGTATGAATCAAG 59.114 41.667 0.00 0.00 0.00 3.02
567 598 4.858850 AGGGAGCAACATGTATGAATCAA 58.141 39.130 0.00 0.00 0.00 2.57
568 599 4.454678 GAGGGAGCAACATGTATGAATCA 58.545 43.478 0.00 0.00 0.00 2.57
569 600 3.496130 CGAGGGAGCAACATGTATGAATC 59.504 47.826 0.00 2.64 0.00 2.52
570 601 3.118261 ACGAGGGAGCAACATGTATGAAT 60.118 43.478 0.00 0.00 0.00 2.57
571 602 2.236146 ACGAGGGAGCAACATGTATGAA 59.764 45.455 0.00 0.00 0.00 2.57
572 603 1.831106 ACGAGGGAGCAACATGTATGA 59.169 47.619 0.00 0.00 0.00 2.15
573 604 1.935873 CACGAGGGAGCAACATGTATG 59.064 52.381 0.00 1.04 0.00 2.39
574 605 1.134401 CCACGAGGGAGCAACATGTAT 60.134 52.381 0.00 0.00 40.01 2.29
575 606 0.249120 CCACGAGGGAGCAACATGTA 59.751 55.000 0.00 0.00 40.01 2.29
576 607 1.003355 CCACGAGGGAGCAACATGT 60.003 57.895 0.00 0.00 40.01 3.21
577 608 3.895025 CCACGAGGGAGCAACATG 58.105 61.111 0.00 0.00 40.01 3.21
587 618 1.826385 AAAAGATTGCTCCCACGAGG 58.174 50.000 0.00 0.00 36.55 4.63
588 619 3.334691 TGTAAAAGATTGCTCCCACGAG 58.665 45.455 0.00 0.00 39.33 4.18
589 620 3.007506 TCTGTAAAAGATTGCTCCCACGA 59.992 43.478 0.00 0.00 0.00 4.35
590 621 3.334691 TCTGTAAAAGATTGCTCCCACG 58.665 45.455 0.00 0.00 0.00 4.94
591 622 7.121315 ACTTTATCTGTAAAAGATTGCTCCCAC 59.879 37.037 10.10 0.00 43.52 4.61
592 623 7.175104 ACTTTATCTGTAAAAGATTGCTCCCA 58.825 34.615 10.10 0.00 43.52 4.37
593 624 7.631717 ACTTTATCTGTAAAAGATTGCTCCC 57.368 36.000 10.10 0.00 43.52 4.30
594 625 7.970614 CCAACTTTATCTGTAAAAGATTGCTCC 59.029 37.037 10.10 0.00 43.52 4.70
595 626 7.970614 CCCAACTTTATCTGTAAAAGATTGCTC 59.029 37.037 10.10 0.00 43.52 4.26
596 627 7.451566 ACCCAACTTTATCTGTAAAAGATTGCT 59.548 33.333 10.10 0.00 43.52 3.91
597 628 7.602753 ACCCAACTTTATCTGTAAAAGATTGC 58.397 34.615 10.10 0.00 43.52 3.56
599 630 8.943002 CGTACCCAACTTTATCTGTAAAAGATT 58.057 33.333 10.10 1.63 43.52 2.40
601 632 6.369615 GCGTACCCAACTTTATCTGTAAAAGA 59.630 38.462 10.10 0.00 37.38 2.52
602 633 6.540205 GCGTACCCAACTTTATCTGTAAAAG 58.460 40.000 0.00 0.00 39.38 2.27
603 634 5.120519 CGCGTACCCAACTTTATCTGTAAAA 59.879 40.000 0.00 0.00 29.86 1.52
604 635 4.626604 CGCGTACCCAACTTTATCTGTAAA 59.373 41.667 0.00 0.00 0.00 2.01
605 636 4.175516 CGCGTACCCAACTTTATCTGTAA 58.824 43.478 0.00 0.00 0.00 2.41
606 637 3.193267 ACGCGTACCCAACTTTATCTGTA 59.807 43.478 11.67 0.00 0.00 2.74
607 638 2.028748 ACGCGTACCCAACTTTATCTGT 60.029 45.455 11.67 0.00 0.00 3.41
608 639 2.613691 ACGCGTACCCAACTTTATCTG 58.386 47.619 11.67 0.00 0.00 2.90
609 640 3.193267 TGTACGCGTACCCAACTTTATCT 59.807 43.478 38.22 3.43 35.26 1.98
610 641 3.510719 TGTACGCGTACCCAACTTTATC 58.489 45.455 38.22 15.87 35.26 1.75
611 642 3.591196 TGTACGCGTACCCAACTTTAT 57.409 42.857 38.22 4.58 35.26 1.40
612 643 3.316283 CTTGTACGCGTACCCAACTTTA 58.684 45.455 38.22 19.89 35.26 1.85
613 644 2.137523 CTTGTACGCGTACCCAACTTT 58.862 47.619 38.22 5.34 35.26 2.66
614 645 1.606224 CCTTGTACGCGTACCCAACTT 60.606 52.381 38.22 6.12 35.26 2.66
615 646 0.037975 CCTTGTACGCGTACCCAACT 60.038 55.000 38.22 6.89 35.26 3.16
616 647 0.038343 TCCTTGTACGCGTACCCAAC 60.038 55.000 38.22 22.33 35.26 3.77
617 648 0.896923 ATCCTTGTACGCGTACCCAA 59.103 50.000 38.22 27.71 35.26 4.12
618 649 2.582272 ATCCTTGTACGCGTACCCA 58.418 52.632 38.22 26.56 35.26 4.51
1024 1055 1.175983 CGAGGAGGAGAGGATTCGGG 61.176 65.000 0.00 0.00 0.00 5.14
1033 1064 2.617538 AGGGGGACGAGGAGGAGA 60.618 66.667 0.00 0.00 0.00 3.71
1063 1100 2.231529 GAGATTCCTTCCGGATCGAGA 58.768 52.381 4.15 0.00 39.58 4.04
1091 1128 3.930012 CGGAATCGGAGGGAGGCC 61.930 72.222 0.00 0.00 0.00 5.19
1092 1129 4.610714 GCGGAATCGGAGGGAGGC 62.611 72.222 0.00 0.00 36.79 4.70
1102 1141 3.202706 GGAGTTGGGCGCGGAATC 61.203 66.667 8.83 0.00 0.00 2.52
1149 1188 2.024273 AGGACCAGAGGAACCGAATCTA 60.024 50.000 0.00 0.00 0.00 1.98
1166 1209 4.468689 CTCGGGGGCGGAAAGGAC 62.469 72.222 0.00 0.00 0.00 3.85
1169 1212 1.523938 GAATCTCGGGGGCGGAAAG 60.524 63.158 0.00 0.00 0.00 2.62
1200 1243 3.618997 GCTGATAAACAAAGACGGGAGGA 60.619 47.826 0.00 0.00 0.00 3.71
1203 1246 3.695830 AGCTGATAAACAAAGACGGGA 57.304 42.857 0.00 0.00 0.00 5.14
1262 1308 2.109181 GGATCTTTCGGGCCGAGG 59.891 66.667 29.30 23.93 37.14 4.63
1324 1370 3.695606 GCACTCTCAGGTCGGGCA 61.696 66.667 0.00 0.00 0.00 5.36
1327 1373 4.803426 GCGGCACTCTCAGGTCGG 62.803 72.222 0.00 0.00 0.00 4.79
1341 1387 2.202932 CATCAACTCCCTCCGCGG 60.203 66.667 22.12 22.12 0.00 6.46
1602 1651 1.807573 GACCTCGGCGAGCTTCTTG 60.808 63.158 30.55 18.03 0.00 3.02
1640 1689 0.315251 GGAGGTTGCTTGGTTTGCTC 59.685 55.000 0.00 0.00 0.00 4.26
1715 1764 3.057033 GTGCAGGATCAAAAGAAGCATGT 60.057 43.478 0.00 0.00 32.75 3.21
1760 1809 1.078709 ACATTGCACGGAACTCATCG 58.921 50.000 0.00 0.00 0.00 3.84
1761 1810 3.492313 GAAACATTGCACGGAACTCATC 58.508 45.455 0.00 0.00 0.00 2.92
1771 1820 2.287644 GCCAAACAAGGAAACATTGCAC 59.712 45.455 0.00 0.00 0.00 4.57
1775 1824 3.323691 GGGTAGCCAAACAAGGAAACATT 59.676 43.478 5.96 0.00 0.00 2.71
1849 1899 2.586425 CCCTTTCCTGCTTGACAAGAA 58.414 47.619 19.51 7.62 0.00 2.52
1991 2041 5.123820 GCACAATAATTCAGTTCACCTAGCA 59.876 40.000 0.00 0.00 0.00 3.49
2149 2199 6.712241 ATGTTTCTGTCTAATCAGTTCACG 57.288 37.500 0.00 0.00 36.85 4.35
2173 2223 3.688694 TTACGGCACCACAAGTAGAAT 57.311 42.857 0.00 0.00 0.00 2.40
2230 2280 8.506168 TTATGGATTAGTTGCCTAAGACTTTG 57.494 34.615 0.00 0.00 36.63 2.77
2333 2383 3.586470 TTTCCACTTTGAAGGGCTGTA 57.414 42.857 0.00 0.00 0.00 2.74
2355 2405 5.706369 GCAGCCTCATCATAAATTCTCATCT 59.294 40.000 0.00 0.00 0.00 2.90
2449 2499 6.442513 AGAAGAGCATGCCAAAAGTAATAC 57.557 37.500 15.66 0.00 0.00 1.89
2462 2512 4.445453 TGTATGCCTGTAAGAAGAGCATG 58.555 43.478 6.07 0.00 43.63 4.06
2464 2514 4.551702 TTGTATGCCTGTAAGAAGAGCA 57.448 40.909 0.00 0.00 34.07 4.26
2516 2566 9.424319 ACAGTAACAACTGAGAAACATATACAG 57.576 33.333 12.23 0.00 39.99 2.74
2601 2651 5.682234 TCATGGCTTGACTAGAAATCAGA 57.318 39.130 0.00 0.00 0.00 3.27
2835 2885 5.808042 ACATTTGAGGAATCAGATGTTCG 57.192 39.130 8.20 0.00 40.92 3.95
2950 3000 4.452825 GGATAGGTTTCCACTTTAGCTCC 58.547 47.826 0.00 0.00 35.72 4.70
2985 3035 0.909610 AATCCCTGGCGTGGAAGAGA 60.910 55.000 0.00 0.00 35.03 3.10
3002 3052 7.106239 CACTAGAAAACAGTGACAGGGATAAT 58.894 38.462 0.00 0.00 45.10 1.28
3031 3081 0.261991 AGGTCCGAAGAGCAGGGATA 59.738 55.000 0.00 0.00 43.21 2.59
3064 3114 7.816031 TCCTAGGTTTTTAACGAAGTCTACATG 59.184 37.037 9.08 0.00 45.00 3.21
3066 3116 7.288810 TCCTAGGTTTTTAACGAAGTCTACA 57.711 36.000 9.08 0.00 45.00 2.74
3089 3139 8.993121 CCTTGTTAGGTATATGTGTCATCAATC 58.007 37.037 0.00 0.00 36.74 2.67
3236 3287 3.866910 CCGAATTTTGCATCCAGAAATGG 59.133 43.478 0.00 0.00 0.00 3.16
3300 3351 8.542926 CCAGATATCACATATTACCTCAATCCA 58.457 37.037 5.32 0.00 0.00 3.41
3406 3464 8.917088 AGATTAATTTGGACTAATGGAATGGTG 58.083 33.333 0.00 0.00 0.00 4.17
3744 3814 6.991938 AGCAATTTGGAACTGTAAGCAATTA 58.008 32.000 0.00 0.00 37.60 1.40
3798 3868 0.473755 TGCCTCTGCAACTCCAAAGA 59.526 50.000 0.00 0.00 46.66 2.52
3861 3931 8.868635 AAGTATACTTCAGCGGTAAAGATTAC 57.131 34.615 12.50 5.66 0.00 1.89
3933 4003 8.827177 TTATGTCGGTTCTATTATAAAGCTGG 57.173 34.615 0.00 0.00 0.00 4.85
3942 4012 4.338964 TCGCACCTTATGTCGGTTCTATTA 59.661 41.667 0.00 0.00 30.82 0.98
4106 4261 1.421646 GAGAGAGGGAGAGGGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
4113 4738 7.466804 AGTAAATATACTGAGAGAGGGAGAGG 58.533 42.308 0.00 0.00 40.88 3.69
4114 4739 8.934023 AAGTAAATATACTGAGAGAGGGAGAG 57.066 38.462 0.00 0.00 41.57 3.20
4115 4740 8.503573 TGAAGTAAATATACTGAGAGAGGGAGA 58.496 37.037 0.00 0.00 41.57 3.71
4116 4741 8.573035 GTGAAGTAAATATACTGAGAGAGGGAG 58.427 40.741 0.00 0.00 41.57 4.30
4117 4742 7.506261 GGTGAAGTAAATATACTGAGAGAGGGA 59.494 40.741 0.00 0.00 41.57 4.20
4118 4743 7.507616 AGGTGAAGTAAATATACTGAGAGAGGG 59.492 40.741 0.00 0.00 41.57 4.30
4119 4744 8.356657 CAGGTGAAGTAAATATACTGAGAGAGG 58.643 40.741 0.00 0.00 41.57 3.69
4120 4745 9.126151 TCAGGTGAAGTAAATATACTGAGAGAG 57.874 37.037 0.00 0.00 41.57 3.20
4163 4788 1.065418 CCGAGGACTAAAGGGTGCAAT 60.065 52.381 0.00 0.00 0.00 3.56
4304 4932 4.323792 CCCAATGTGGATTCTACTGTCAGT 60.324 45.833 10.99 10.99 40.96 3.41
4359 4988 5.063880 GGCCAAGATACTACGATTCCAAAT 58.936 41.667 0.00 0.00 0.00 2.32
4423 5052 7.281100 CAGTCCAATGAGACCTTTTTAGATACC 59.719 40.741 0.00 0.00 37.49 2.73
4437 5066 5.882000 CCAACATAATGACAGTCCAATGAGA 59.118 40.000 11.79 0.00 0.00 3.27
4439 5068 5.569355 ACCAACATAATGACAGTCCAATGA 58.431 37.500 11.79 0.00 0.00 2.57
4441 5070 5.774690 ACAACCAACATAATGACAGTCCAAT 59.225 36.000 0.00 0.00 0.00 3.16
4445 5074 6.312399 TGAACAACCAACATAATGACAGTC 57.688 37.500 0.00 0.00 0.00 3.51
4451 5080 7.382218 GGACTTTCTTGAACAACCAACATAATG 59.618 37.037 0.00 0.00 0.00 1.90
4501 5130 2.089980 AGCAAATGTCAGCATGGACTC 58.910 47.619 0.00 0.00 38.61 3.36
4565 5197 7.333921 ACTTGAATCACTGCAAATTGTCAAAAA 59.666 29.630 0.00 0.00 0.00 1.94
4566 5198 6.817641 ACTTGAATCACTGCAAATTGTCAAAA 59.182 30.769 0.00 0.00 0.00 2.44
4567 5199 6.256104 CACTTGAATCACTGCAAATTGTCAAA 59.744 34.615 0.00 0.00 0.00 2.69
4568 5200 5.749588 CACTTGAATCACTGCAAATTGTCAA 59.250 36.000 0.00 0.00 0.00 3.18
4569 5201 5.067544 TCACTTGAATCACTGCAAATTGTCA 59.932 36.000 0.00 0.00 0.00 3.58
4570 5202 5.400485 GTCACTTGAATCACTGCAAATTGTC 59.600 40.000 0.00 0.00 0.00 3.18
4571 5203 5.068198 AGTCACTTGAATCACTGCAAATTGT 59.932 36.000 0.00 0.00 0.00 2.71
4572 5204 5.526115 AGTCACTTGAATCACTGCAAATTG 58.474 37.500 0.00 0.00 0.00 2.32
4573 5205 5.561532 CGAGTCACTTGAATCACTGCAAATT 60.562 40.000 7.40 0.00 38.92 1.82
4574 5206 4.083643 CGAGTCACTTGAATCACTGCAAAT 60.084 41.667 7.40 0.00 38.92 2.32
4644 5286 1.078918 CCGGAGATTCAGCACTGCA 60.079 57.895 0.00 0.00 0.00 4.41
4649 5291 0.462581 GATGCACCGGAGATTCAGCA 60.463 55.000 9.46 6.78 36.34 4.41
4888 5531 2.487265 CCCTTTCTAACTGCTGTGTGGT 60.487 50.000 0.00 0.00 0.00 4.16
4910 5553 1.673009 CGCTGCGGGTCCCTTTTTA 60.673 57.895 15.40 0.00 0.00 1.52
4998 5643 1.067635 GCAAAAATGCCCGTGTCTGAT 60.068 47.619 0.00 0.00 0.00 2.90
5023 5669 3.243569 ACAAAAATCGGTCGCAATTCCAA 60.244 39.130 0.00 0.00 0.00 3.53
5095 5749 0.248215 GCAGCAACAGACACACACAC 60.248 55.000 0.00 0.00 0.00 3.82
5099 5753 0.039798 CATGGCAGCAACAGACACAC 60.040 55.000 0.00 0.00 0.00 3.82
5100 5754 0.179023 TCATGGCAGCAACAGACACA 60.179 50.000 0.00 0.00 0.00 3.72
5101 5755 0.239347 GTCATGGCAGCAACAGACAC 59.761 55.000 0.00 0.00 0.00 3.67
5102 5756 0.179023 TGTCATGGCAGCAACAGACA 60.179 50.000 0.00 3.28 34.02 3.41
5108 5762 0.250510 TAACCGTGTCATGGCAGCAA 60.251 50.000 11.25 0.00 0.00 3.91
5114 5768 6.189677 ACAATAATGTTAACCGTGTCATGG 57.810 37.500 9.71 9.71 35.91 3.66
5136 5790 4.185394 TGGCATCAATCAATTCATGCAAC 58.815 39.130 12.65 0.00 42.94 4.17
5151 5805 2.688515 ACAGCATCCATTGATGGCATCA 60.689 45.455 25.63 25.63 46.15 3.07
5152 5806 1.961394 ACAGCATCCATTGATGGCATC 59.039 47.619 20.52 20.52 46.15 3.91
5153 5807 2.082140 ACAGCATCCATTGATGGCAT 57.918 45.000 0.00 0.00 46.15 4.40
5156 5810 4.202172 TGCAATTACAGCATCCATTGATGG 60.202 41.667 8.72 3.54 46.15 3.51
5158 5812 5.601583 TTGCAATTACAGCATCCATTGAT 57.398 34.783 0.00 0.00 42.33 2.57
5159 5813 5.047164 ACTTTGCAATTACAGCATCCATTGA 60.047 36.000 0.00 0.00 42.33 2.57
5211 5865 5.426689 TTGATAAGAGTGAACTGCCTGAT 57.573 39.130 0.00 0.00 0.00 2.90
5213 5867 5.106396 CCTTTTGATAAGAGTGAACTGCCTG 60.106 44.000 0.00 0.00 0.00 4.85
5214 5868 5.006386 CCTTTTGATAAGAGTGAACTGCCT 58.994 41.667 0.00 0.00 0.00 4.75
5252 5906 3.898123 AGCTTATATTCTGCCGGAGAAGA 59.102 43.478 5.05 9.55 44.14 2.87
5253 5907 4.264460 AGCTTATATTCTGCCGGAGAAG 57.736 45.455 5.05 0.00 44.14 2.85
5258 5912 2.481952 GAGCAAGCTTATATTCTGCCGG 59.518 50.000 0.00 0.00 0.00 6.13
5272 5926 2.376808 TTACTGAGCTCTGAGCAAGC 57.623 50.000 29.49 18.61 45.56 4.01
5285 5939 5.248477 AGCAGAGGAAGTGGTAAATTACTGA 59.752 40.000 2.96 0.00 0.00 3.41
5298 5955 9.941325 CATCTTATATTTATGAGCAGAGGAAGT 57.059 33.333 0.00 0.00 0.00 3.01
5346 6003 9.052759 AGACATTTTGAGACTTGTAAATAACGT 57.947 29.630 0.00 0.00 0.00 3.99
5347 6004 9.878599 AAGACATTTTGAGACTTGTAAATAACG 57.121 29.630 0.00 0.00 0.00 3.18
5380 6037 9.846248 GTGTCAAAAATGTATGATAAGAAAGCT 57.154 29.630 0.00 0.00 0.00 3.74
5381 6038 9.076596 GGTGTCAAAAATGTATGATAAGAAAGC 57.923 33.333 0.00 0.00 0.00 3.51
5418 6075 4.329256 CACAATATCAGCACACAGACAGAG 59.671 45.833 0.00 0.00 0.00 3.35
5419 6076 4.248058 CACAATATCAGCACACAGACAGA 58.752 43.478 0.00 0.00 0.00 3.41
5421 6078 4.006780 ACACAATATCAGCACACAGACA 57.993 40.909 0.00 0.00 0.00 3.41
5422 6079 6.480524 TTTACACAATATCAGCACACAGAC 57.519 37.500 0.00 0.00 0.00 3.51
5424 6081 7.075674 TGATTTACACAATATCAGCACACAG 57.924 36.000 0.00 0.00 0.00 3.66
5449 6106 7.993101 TGTACTAGTTACACATGTCAGGATAC 58.007 38.462 0.00 0.00 35.64 2.24
5450 6107 8.584063 TTGTACTAGTTACACATGTCAGGATA 57.416 34.615 0.00 0.00 40.60 2.59
5487 6152 7.167801 TAAAATAAACCTTTTTGTGTGCGTAGC 59.832 33.333 0.00 0.00 40.69 3.58
5553 6244 9.429109 TTTCTCTTAAATTTGTTTTACTCCCCT 57.571 29.630 0.00 0.00 29.47 4.79
5584 6275 3.631250 CCTGTGGCATACATTTACCCTT 58.369 45.455 0.00 0.00 38.92 3.95
5614 6308 2.480555 GGGAATTGCGTCGCACTG 59.519 61.111 21.61 0.00 38.71 3.66
5616 6310 4.811761 GCGGGAATTGCGTCGCAC 62.812 66.667 21.61 8.72 46.33 5.34
5622 6316 2.413437 TTTGTGTGGCGGGAATTGCG 62.413 55.000 0.00 0.00 0.00 4.85
5640 6344 1.801395 CGTCGGAATCCTATGTGCGTT 60.801 52.381 0.00 0.00 0.00 4.84
5643 6347 1.222115 GCCGTCGGAATCCTATGTGC 61.222 60.000 17.49 0.00 0.00 4.57
5648 6352 3.221389 CGGGCCGTCGGAATCCTA 61.221 66.667 19.97 0.00 0.00 2.94
5675 6379 3.344137 AATCCGAGGCCGCCACAAT 62.344 57.895 13.15 0.00 0.00 2.71
5676 6380 3.969250 GAATCCGAGGCCGCCACAA 62.969 63.158 13.15 0.00 0.00 3.33
5680 6384 4.176752 AAGGAATCCGAGGCCGCC 62.177 66.667 0.00 0.00 0.00 6.13
5731 6437 1.137404 GCATGTGACCGTTGGATGC 59.863 57.895 0.00 0.00 33.23 3.91
5858 6565 1.134670 GGGGAGACGGAAGAGAATGTG 60.135 57.143 0.00 0.00 0.00 3.21
5859 6566 1.196012 GGGGAGACGGAAGAGAATGT 58.804 55.000 0.00 0.00 0.00 2.71
5861 6568 0.042731 TGGGGGAGACGGAAGAGAAT 59.957 55.000 0.00 0.00 0.00 2.40
5871 6588 1.800229 ATGTTTGGGGTGGGGGAGAC 61.800 60.000 0.00 0.00 0.00 3.36
5884 6601 3.039202 GCGGCGAGGTGGATGTTTG 62.039 63.158 12.98 0.00 0.00 2.93
6276 6994 0.603975 GCGCTCCTTCTTGGACTTGT 60.604 55.000 0.00 0.00 40.56 3.16
6416 7146 0.317160 TGAGACCAGCTGTAACACCG 59.683 55.000 13.81 0.00 0.00 4.94
6417 7147 1.344763 AGTGAGACCAGCTGTAACACC 59.655 52.381 13.81 0.00 35.23 4.16
6419 7149 2.035961 GTGAGTGAGACCAGCTGTAACA 59.964 50.000 13.81 4.58 0.00 2.41
6425 7155 0.965439 GTCAGTGAGTGAGACCAGCT 59.035 55.000 0.00 0.00 35.13 4.24
6429 7159 1.587054 CCGGTCAGTGAGTGAGACC 59.413 63.158 0.00 0.00 46.48 3.85
6459 7193 6.021596 AGAAAAATGAAACCGAAATCGATCG 58.978 36.000 9.36 9.36 43.02 3.69
6460 7194 6.251376 CCAGAAAAATGAAACCGAAATCGATC 59.749 38.462 4.04 0.92 43.02 3.69
6461 7195 6.092748 CCAGAAAAATGAAACCGAAATCGAT 58.907 36.000 4.04 0.00 43.02 3.59
6462 7196 5.457140 CCAGAAAAATGAAACCGAAATCGA 58.543 37.500 4.04 0.00 43.02 3.59
6463 7197 5.745653 CCAGAAAAATGAAACCGAAATCG 57.254 39.130 0.00 0.00 39.44 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.