Multiple sequence alignment - TraesCS5A01G505500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G505500 chr5A 100.000 6516 0 0 1 6516 670817823 670824338 0.000000e+00 12033
1 TraesCS5A01G505500 chr5A 78.839 827 88 37 4253 5027 670821181 670821972 1.640000e-130 477
2 TraesCS5A01G505500 chr5A 78.839 827 88 37 3359 4150 670822075 670822849 1.640000e-130 477
3 TraesCS5A01G505500 chr5A 97.414 116 2 1 4106 4221 670821882 670821996 5.150000e-46 196
4 TraesCS5A01G505500 chr5A 97.414 116 2 1 4060 4174 670821928 670822043 5.150000e-46 196
5 TraesCS5A01G505500 chr5A 96.739 92 3 0 4936 5027 670821928 670822019 3.150000e-33 154
6 TraesCS5A01G505500 chr4B 92.451 5100 259 56 2 5027 627518097 627523144 0.000000e+00 7169
7 TraesCS5A01G505500 chr4B 91.231 593 33 9 4936 5516 627523100 627523685 0.000000e+00 789
8 TraesCS5A01G505500 chr4B 80.248 886 101 39 3358 4197 627522334 627523191 3.360000e-167 599
9 TraesCS5A01G505500 chr4B 79.756 820 94 33 4257 5027 627521436 627522232 4.470000e-146 529
10 TraesCS5A01G505500 chr4B 84.040 495 74 5 7 497 627334158 627334651 7.650000e-129 472
11 TraesCS5A01G505500 chr4B 80.286 629 86 20 5032 5645 627521436 627522041 2.160000e-119 440
12 TraesCS5A01G505500 chr4B 79.900 602 74 25 4106 4672 627523053 627523642 1.320000e-106 398
13 TraesCS5A01G505500 chr4B 81.667 420 51 14 4936 5335 627522235 627522648 6.300000e-85 326
14 TraesCS5A01G505500 chr4B 85.648 216 22 4 6171 6380 627523980 627524192 1.100000e-52 219
15 TraesCS5A01G505500 chr4B 97.436 117 1 2 4065 4179 627522193 627522309 1.430000e-46 198
16 TraesCS5A01G505500 chr4B 93.388 121 7 1 4101 4221 627522137 627522256 1.870000e-40 178
17 TraesCS5A01G505500 chr4B 96.629 89 3 0 4939 5027 627522191 627522279 1.460000e-31 148
18 TraesCS5A01G505500 chr4B 83.969 131 19 2 3843 3972 627523808 627523937 2.470000e-24 124
19 TraesCS5A01G505500 chr4B 97.101 69 2 0 4153 4221 627523053 627523121 4.130000e-22 117
20 TraesCS5A01G505500 chr4B 94.667 75 2 2 4060 4132 627522235 627522309 1.480000e-21 115
21 TraesCS5A01G505500 chr4D 95.004 3483 98 28 733 4174 489186027 489189474 0.000000e+00 5398
22 TraesCS5A01G505500 chr4D 90.073 1783 114 30 4101 5828 489189355 489191129 0.000000e+00 2254
23 TraesCS5A01G505500 chr4D 86.546 721 87 8 2 719 489184885 489185598 0.000000e+00 785
24 TraesCS5A01G505500 chr4D 79.187 836 99 38 3359 4150 489189506 489190310 1.620000e-140 510
25 TraesCS5A01G505500 chr4D 80.277 649 82 33 3358 3972 489190310 489190946 1.290000e-121 448
26 TraesCS5A01G505500 chr4D 81.742 597 45 33 5820 6380 489191268 489191836 2.160000e-119 440
27 TraesCS5A01G505500 chr4D 77.287 634 93 22 5027 5650 489188671 489189263 6.300000e-85 326
28 TraesCS5A01G505500 chr4D 83.155 374 38 13 4253 4606 489188672 489189040 1.050000e-82 318
29 TraesCS5A01G505500 chr4D 82.749 342 36 12 4687 5027 489189131 489189450 3.850000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G505500 chr5A 670817823 670824338 6515 False 2255.500000 12033 91.540833 1 6516 6 chr5A.!!$F1 6515
1 TraesCS5A01G505500 chr4B 627518097 627524192 6095 False 810.642857 7169 88.169786 2 6380 14 chr4B.!!$F2 6378
2 TraesCS5A01G505500 chr4D 489184885 489191836 6951 False 1195.777778 5398 84.002222 2 6380 9 chr4D.!!$F1 6378

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 566 0.600255 ACATCCGTAGCTTATGCCGC 60.600 55.000 0.00 0.00 40.80 6.53 F
1081 1545 0.546598 AATCCAGCTAGGGTTTCCGG 59.453 55.000 0.00 0.00 37.47 5.14 F
1896 2362 0.462047 AATCGGGGCAGTTAGAAGCG 60.462 55.000 0.00 0.00 0.00 4.68 F
2268 2734 0.384309 CACTAGCCTTGCGACGGATA 59.616 55.000 0.00 0.00 0.00 2.59 F
2274 2740 1.518572 CTTGCGACGGATAGCGGTT 60.519 57.895 0.00 0.00 35.87 4.44 F
2316 2782 2.485479 GCTCCTGTTCTTCAGTTCACCA 60.485 50.000 0.00 0.00 42.19 4.17 F
3791 4262 2.614779 CCGCAGCAGATATATCAGTGG 58.385 52.381 15.08 12.41 0.00 4.00 F
4275 4756 0.813821 GCTTCCAGCCATCCTTGTTC 59.186 55.000 0.00 0.00 34.48 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 2362 0.035630 ATCTCCTGACAAGCCAGTGC 60.036 55.000 0.00 0.00 37.95 4.40 R
2163 2629 0.975040 ATCGGCTCCTCTCAAGCTGT 60.975 55.000 4.05 0.00 44.76 4.40 R
3770 4241 2.614779 CACTGATATATCTGCTGCGGG 58.385 52.381 16.99 0.00 0.00 6.13 R
3976 4447 0.953960 CTTGTTGCCCGTCAGGTACC 60.954 60.000 2.73 2.73 38.26 3.34 R
3987 4458 7.148738 CGATGATATATCAGTACACTTGTTGCC 60.149 40.741 19.73 0.00 40.64 4.52 R
4275 4756 6.143118 GCTATTTAACTGTCTGCGTCTCTATG 59.857 42.308 0.00 0.00 0.00 2.23 R
5438 6024 0.955428 TCTGATGCGGTTGTGCCTTC 60.955 55.000 0.00 0.00 34.25 3.46 R
5986 6874 0.391597 TGTCCAGTCCACCGAGAAAC 59.608 55.000 0.00 0.00 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.079689 TCTTTCCACGACATGTAGCATAA 57.920 39.130 5.81 0.00 0.00 1.90
45 46 6.973474 ACGACATGTAGCATAAGAGTTCTAAC 59.027 38.462 5.81 0.00 0.00 2.34
46 47 6.972901 CGACATGTAGCATAAGAGTTCTAACA 59.027 38.462 0.00 0.00 0.00 2.41
56 57 7.766278 GCATAAGAGTTCTAACATCTCTTTCCA 59.234 37.037 11.02 0.00 43.24 3.53
57 58 9.092876 CATAAGAGTTCTAACATCTCTTTCCAC 57.907 37.037 11.02 0.00 43.24 4.02
58 59 6.043854 AGAGTTCTAACATCTCTTTCCACC 57.956 41.667 0.00 0.00 35.37 4.61
81 82 9.832445 CACCATTATTAGATTACCTAACACACT 57.168 33.333 0.00 0.00 39.93 3.55
119 120 2.951229 TCTTTCCCCAAGAACCTCAC 57.049 50.000 0.00 0.00 38.68 3.51
120 121 2.131854 TCTTTCCCCAAGAACCTCACA 58.868 47.619 0.00 0.00 38.68 3.58
121 122 2.512056 TCTTTCCCCAAGAACCTCACAA 59.488 45.455 0.00 0.00 38.68 3.33
139 140 4.080969 ACAACTACGTTTGTGCGAAAAA 57.919 36.364 4.85 0.00 38.31 1.94
229 232 9.253832 AGGACATCATGACAATAACCAAAATTA 57.746 29.630 0.00 0.00 0.00 1.40
230 233 9.301153 GGACATCATGACAATAACCAAAATTAC 57.699 33.333 0.00 0.00 0.00 1.89
273 276 7.831753 AGATACCTAGTTGTCCATATCATTCG 58.168 38.462 0.00 0.00 0.00 3.34
337 342 3.053455 GCAAAGAGATACCCTCGAATCG 58.947 50.000 0.00 0.00 46.49 3.34
368 373 0.963962 CACCAAGCACTCCAAGCATT 59.036 50.000 0.00 0.00 0.00 3.56
379 384 1.202758 TCCAAGCATTCGTGTCACCTT 60.203 47.619 0.00 0.00 0.00 3.50
397 402 2.808543 CCTTCAGAGCCAAACACTGTAC 59.191 50.000 0.00 0.00 38.09 2.90
398 403 3.495100 CCTTCAGAGCCAAACACTGTACT 60.495 47.826 0.00 0.00 38.09 2.73
403 408 2.802816 GAGCCAAACACTGTACTGTCTG 59.197 50.000 1.89 1.54 0.00 3.51
405 410 1.526887 CCAAACACTGTACTGTCTGCG 59.473 52.381 1.89 0.00 0.00 5.18
419 424 1.126296 GTCTGCGCTCGTTAGGTTTTC 59.874 52.381 9.73 0.00 0.00 2.29
445 452 7.207383 TGACATAATTCTGTATGTTACCTCCG 58.793 38.462 0.00 0.00 43.25 4.63
454 461 5.113383 TGTATGTTACCTCCGCTTGTAATG 58.887 41.667 0.00 0.00 30.35 1.90
507 520 1.701292 CATGGATCCATGTCCTAGCCA 59.299 52.381 36.88 5.21 46.20 4.75
508 521 2.123018 TGGATCCATGTCCTAGCCAT 57.877 50.000 11.44 0.00 39.12 4.40
521 534 6.364701 TGTCCTAGCCATTATGCTTAATTGT 58.635 36.000 2.22 0.00 42.75 2.71
532 545 4.888326 TGCTTAATTGTTGGAGCCAAAT 57.112 36.364 3.05 0.00 37.70 2.32
553 566 0.600255 ACATCCGTAGCTTATGCCGC 60.600 55.000 0.00 0.00 40.80 6.53
568 581 6.554334 TTATGCCGCTGGTATAAGATTTTC 57.446 37.500 11.80 0.00 35.83 2.29
608 621 8.773404 ATTATTACACGTTATAATCTCCCTGC 57.227 34.615 5.33 0.00 0.00 4.85
609 622 3.470645 ACACGTTATAATCTCCCTGCC 57.529 47.619 0.00 0.00 0.00 4.85
613 626 5.071250 ACACGTTATAATCTCCCTGCCATAA 59.929 40.000 0.00 0.00 0.00 1.90
651 664 5.569059 GCATCCGTGAAACTAGACAAAATTG 59.431 40.000 0.00 0.00 31.75 2.32
668 681 7.267857 ACAAAATTGAAGAACCTCCTTTTGAG 58.732 34.615 10.71 0.00 41.07 3.02
727 1158 8.182227 GGAACAAACCTTGATTATAGCAAGTAC 58.818 37.037 13.25 0.00 40.79 2.73
835 1276 7.386848 TCACCTTAACCTCGAAGTATTTTCTTG 59.613 37.037 0.00 0.00 0.00 3.02
838 1279 5.840940 AACCTCGAAGTATTTTCTTGACG 57.159 39.130 0.00 0.00 0.00 4.35
839 1280 3.678548 ACCTCGAAGTATTTTCTTGACGC 59.321 43.478 0.00 0.00 0.00 5.19
841 1282 2.664568 TCGAAGTATTTTCTTGACGCGG 59.335 45.455 12.47 0.00 0.00 6.46
874 1315 3.251004 CCGGAAGACACAAGAAGGAAAAG 59.749 47.826 0.00 0.00 0.00 2.27
929 1370 4.397832 AAACCACGGCGCGGGTAT 62.398 61.111 21.86 10.99 36.05 2.73
1081 1545 0.546598 AATCCAGCTAGGGTTTCCGG 59.453 55.000 0.00 0.00 37.47 5.14
1083 1547 2.511600 CAGCTAGGGTTTCCGGCG 60.512 66.667 0.00 0.00 39.97 6.46
1084 1548 2.682494 AGCTAGGGTTTCCGGCGA 60.682 61.111 9.30 0.00 39.97 5.54
1085 1549 2.202892 GCTAGGGTTTCCGGCGAG 60.203 66.667 9.30 0.00 38.33 5.03
1086 1550 2.202892 CTAGGGTTTCCGGCGAGC 60.203 66.667 9.30 0.00 38.33 5.03
1191 1657 4.096003 AACATCTCGGCGGTGGGG 62.096 66.667 7.21 0.00 0.00 4.96
1776 2242 2.049156 TTCGACCTCTGCACGCTG 60.049 61.111 0.00 0.00 0.00 5.18
1875 2341 1.295792 TTGACGAGTTTGTGCAGGAC 58.704 50.000 0.00 0.00 0.00 3.85
1881 2347 1.126846 GAGTTTGTGCAGGACGAATCG 59.873 52.381 0.00 0.00 30.24 3.34
1890 2356 0.974010 AGGACGAATCGGGGCAGTTA 60.974 55.000 7.80 0.00 0.00 2.24
1896 2362 0.462047 AATCGGGGCAGTTAGAAGCG 60.462 55.000 0.00 0.00 0.00 4.68
1936 2402 1.250328 CAAAGAGCTGTGGGCAATGA 58.750 50.000 0.00 0.00 44.79 2.57
2103 2569 1.165907 CGGCAAACAAGGCTGTGAGA 61.166 55.000 0.00 0.00 35.37 3.27
2112 2578 0.539051 AGGCTGTGAGAGATTTCCGG 59.461 55.000 0.00 0.00 0.00 5.14
2163 2629 2.501723 GTTCTTCCCAGTGATGGAGCTA 59.498 50.000 0.00 0.00 32.37 3.32
2229 2695 6.812656 CAGCATCAGATATCTACTGGAATCAC 59.187 42.308 4.54 0.00 36.22 3.06
2262 2728 0.612174 AGACCTCACTAGCCTTGCGA 60.612 55.000 0.00 0.00 0.00 5.10
2268 2734 0.384309 CACTAGCCTTGCGACGGATA 59.616 55.000 0.00 0.00 0.00 2.59
2274 2740 1.518572 CTTGCGACGGATAGCGGTT 60.519 57.895 0.00 0.00 35.87 4.44
2313 2779 3.777106 ATGCTCCTGTTCTTCAGTTCA 57.223 42.857 0.00 0.00 42.19 3.18
2316 2782 2.485479 GCTCCTGTTCTTCAGTTCACCA 60.485 50.000 0.00 0.00 42.19 4.17
2378 2844 4.897509 TCAATGTGGAGGCTATGGATAG 57.102 45.455 0.00 0.00 0.00 2.08
2592 3058 6.992063 TGCTTCTTCCTTGTTAATCTCATC 57.008 37.500 0.00 0.00 0.00 2.92
2865 3331 3.397618 TGGTCCCTGAAGAAAATGAGGAA 59.602 43.478 0.00 0.00 0.00 3.36
2905 3371 3.563808 TGACGAAGAAACAAATGGTCTGG 59.436 43.478 0.00 0.00 0.00 3.86
3084 3550 5.644977 TCACGATGATCTACTCACTGTTT 57.355 39.130 0.00 0.00 36.48 2.83
3414 3880 7.331026 TGCAGACAGTTAATAGCTTTGTAGAT 58.669 34.615 0.00 0.00 0.00 1.98
3550 4016 3.324846 TCACCAGAGCTTCACATTGTACT 59.675 43.478 0.00 0.00 0.00 2.73
3682 4153 9.466497 AGCTGTCTATCTAAATTCCATGAAAAA 57.534 29.630 0.00 0.00 0.00 1.94
3705 4176 5.887214 AACACCAGGCAGTATCATACATA 57.113 39.130 0.00 0.00 0.00 2.29
3791 4262 2.614779 CCGCAGCAGATATATCAGTGG 58.385 52.381 15.08 12.41 0.00 4.00
3900 4371 6.817184 TCTAACACTGGAATCTACCTTATGC 58.183 40.000 0.00 0.00 0.00 3.14
3987 4458 4.789012 TTAGTAGTTTGGTACCTGACGG 57.211 45.455 14.36 0.00 0.00 4.79
4012 4483 7.118390 GGGCAACAAGTGTACTGATATATCATC 59.882 40.741 15.71 9.96 35.19 2.92
4060 4541 8.995027 TCATTCATATGTTAGGCCATTAGTTT 57.005 30.769 5.01 0.00 33.34 2.66
4275 4756 0.813821 GCTTCCAGCCATCCTTGTTC 59.186 55.000 0.00 0.00 34.48 3.18
4284 4765 3.126831 GCCATCCTTGTTCATAGAGACG 58.873 50.000 0.00 0.00 0.00 4.18
4310 4791 7.117812 GCAGACAGTTAAATAGCTTTGTAGACA 59.882 37.037 0.00 0.00 0.00 3.41
4394 4891 7.181569 TGAAGGAAAAACTCAAGGTCATTTT 57.818 32.000 0.00 0.00 0.00 1.82
4450 4947 6.759272 TGTACAGCTCTCATTCTTTTGTACT 58.241 36.000 11.63 0.00 39.81 2.73
4497 4998 2.892374 AGCTGGAACTGTTTGTTTTGC 58.108 42.857 0.00 0.00 39.30 3.68
4519 5029 7.462109 TGCAAATGACAAACACTTCATTTAC 57.538 32.000 8.76 5.17 46.14 2.01
4552 5062 6.709846 AGGCATGAGCTGTCTATCTTAAATTC 59.290 38.462 0.00 0.00 38.30 2.17
4553 5063 6.347240 GGCATGAGCTGTCTATCTTAAATTCG 60.347 42.308 0.00 0.00 41.70 3.34
4561 5071 7.482654 TGTCTATCTTAAATTCGATGCCAAG 57.517 36.000 0.00 0.00 0.00 3.61
4589 5099 6.233434 TCAGGCATTATCCTACATGATCAAC 58.767 40.000 0.00 0.00 33.95 3.18
4600 5110 7.215085 TCCTACATGATCAACTCATCATCTTG 58.785 38.462 0.00 0.00 42.91 3.02
4602 5112 7.385478 CCTACATGATCAACTCATCATCTTGAG 59.615 40.741 0.00 0.09 42.91 3.02
4604 5114 7.510407 ACATGATCAACTCATCATCTTGAGAT 58.490 34.615 0.00 0.00 44.88 2.75
4605 5115 7.993758 ACATGATCAACTCATCATCTTGAGATT 59.006 33.333 0.00 0.00 44.88 2.40
4633 5144 3.370840 TGGAATTGCCTGCATCTAGTT 57.629 42.857 0.00 0.00 37.63 2.24
4655 5173 1.560505 AAAAGCCCCAACCATAGCAG 58.439 50.000 0.00 0.00 0.00 4.24
4668 5186 6.168389 CAACCATAGCAGATATATCAGTGCA 58.832 40.000 22.16 12.51 38.44 4.57
4750 5268 2.834113 ACACTGGGAGCTACCTTATGT 58.166 47.619 18.18 14.60 38.98 2.29
4780 5298 5.831997 AGAATTGCAAAGTCAAACTACACC 58.168 37.500 1.71 0.00 44.66 4.16
4797 5315 7.797038 ACTACACCGTAATTTCTGAAGTTTT 57.203 32.000 3.42 0.00 0.00 2.43
4859 5379 5.416083 TGTGCCACAAGTGTACTGATATAC 58.584 41.667 0.00 0.00 0.00 1.47
4868 5389 8.107095 ACAAGTGTACTGATATACCATTGGTTT 58.893 33.333 14.78 8.93 37.09 3.27
4871 5392 9.174166 AGTGTACTGATATACCATTGGTTTTTC 57.826 33.333 14.78 11.19 37.09 2.29
4879 5400 9.125026 GATATACCATTGGTTTTTCTGACATCT 57.875 33.333 14.78 0.00 37.09 2.90
4919 5440 4.563580 CCCTTCTCACCTTTTCTCATTCGA 60.564 45.833 0.00 0.00 0.00 3.71
5014 5535 9.019656 TGCTGTGTTTGTATCTTTATTAACCAT 57.980 29.630 0.00 0.00 0.00 3.55
5058 5626 5.059833 CCAGCCATCCTTGTTAATAGAGAC 58.940 45.833 0.00 0.00 0.00 3.36
5059 5627 5.396772 CCAGCCATCCTTGTTAATAGAGACA 60.397 44.000 0.00 0.00 0.00 3.41
5064 5632 6.983307 CCATCCTTGTTAATAGAGACACAGAG 59.017 42.308 0.00 0.00 0.00 3.35
5067 5635 6.039616 CCTTGTTAATAGAGACACAGAGAGC 58.960 44.000 0.00 0.00 0.00 4.09
5138 5712 4.262808 CCTGTCCTGGATCTGTATCAATCC 60.263 50.000 0.00 0.00 41.60 3.01
5144 5721 5.306419 CCTGGATCTGTATCAATCCTGAAGA 59.694 44.000 9.15 0.00 41.19 2.87
5149 5726 5.895928 TCTGTATCAATCCTGAAGAACTCG 58.104 41.667 0.00 0.00 34.49 4.18
5171 5752 4.509970 CGAGGTCAATACACACTTGTTTCA 59.490 41.667 0.00 0.00 37.15 2.69
5178 5759 7.535258 GTCAATACACACTTGTTTCATGACATC 59.465 37.037 0.00 0.00 37.15 3.06
5203 5784 2.219458 TCTAGTATCACCGGAGCTTCG 58.781 52.381 9.46 7.67 0.00 3.79
5291 5872 3.829601 TGGAACTGTTGTGTTGGAACTTT 59.170 39.130 0.00 0.00 0.00 2.66
5303 5884 7.199766 TGTGTTGGAACTTTGAAATGACATAC 58.800 34.615 0.00 0.00 0.00 2.39
5309 5890 7.284261 TGGAACTTTGAAATGACATACACTTCA 59.716 33.333 0.00 0.00 41.84 3.02
5406 5992 7.215789 ACATGATTAGCTCACCATCTTAAGAG 58.784 38.462 11.53 0.67 36.48 2.85
5407 5993 7.070447 ACATGATTAGCTCACCATCTTAAGAGA 59.930 37.037 11.53 1.84 36.48 3.10
5433 6019 2.023673 TCCTTTAATTGCGCCCATCTG 58.976 47.619 4.18 0.00 0.00 2.90
5444 6030 2.125552 CCATCTGACGCGAAGGCA 60.126 61.111 15.93 4.20 39.92 4.75
5453 6039 3.737172 GCGAAGGCACAACCGCAT 61.737 61.111 0.00 0.00 46.52 4.73
5473 6059 3.832615 TCAGATGTATCAGTGCATGCT 57.167 42.857 20.33 0.00 30.30 3.79
5516 6102 4.015872 TCTGTGTTAGAATGTCCCAACC 57.984 45.455 0.00 0.00 30.84 3.77
5534 6237 8.406297 GTCCCAACCATAAGAGAATTATTGTTC 58.594 37.037 0.00 0.00 0.00 3.18
5637 6343 4.690748 TCCTGAAGTTTTGATGTAGCTTCG 59.309 41.667 0.00 0.00 38.58 3.79
5670 6376 9.034800 TCAGTACCATGAGCATATATGTCATAA 57.965 33.333 20.68 12.31 31.84 1.90
5723 6433 6.841601 TCTCTTCCCTTTTCATCTTTTCTCA 58.158 36.000 0.00 0.00 0.00 3.27
5725 6435 8.605947 TCTCTTCCCTTTTCATCTTTTCTCATA 58.394 33.333 0.00 0.00 0.00 2.15
5773 6483 8.554528 GTTTACTGTTCCTGTACCTTTCTTTAC 58.445 37.037 0.00 0.00 0.00 2.01
5799 6510 6.919662 CAGTGTTCTTGTATTGATGCTTTTGT 59.080 34.615 0.00 0.00 0.00 2.83
5804 6515 5.241285 TCTTGTATTGATGCTTTTGTCTGCA 59.759 36.000 0.00 0.00 43.67 4.41
5816 6527 5.122869 GCTTTTGTCTGCATGTAATCAGAGA 59.877 40.000 1.48 0.00 39.71 3.10
5874 6732 9.899226 GGTTATATGATCAAGGTTCAATAAAGC 57.101 33.333 0.00 0.00 35.53 3.51
5880 6738 3.374058 TCAAGGTTCAATAAAGCGCTAGC 59.626 43.478 12.05 4.06 45.58 3.42
5904 6780 1.424638 AAGTGTCTAGGCGGCCATAT 58.575 50.000 23.09 2.67 0.00 1.78
5937 6813 7.745717 ACTTGATAGGCATGTATTTAGGCTAA 58.254 34.615 2.04 2.04 42.55 3.09
5938 6814 7.880195 ACTTGATAGGCATGTATTTAGGCTAAG 59.120 37.037 7.09 0.00 42.55 2.18
5940 6816 7.615403 TGATAGGCATGTATTTAGGCTAAGAG 58.385 38.462 7.09 0.00 42.55 2.85
5941 6817 4.646572 AGGCATGTATTTAGGCTAAGAGC 58.353 43.478 7.09 6.59 41.46 4.09
5944 6832 5.474876 GGCATGTATTTAGGCTAAGAGCATT 59.525 40.000 7.09 0.00 44.75 3.56
5975 6863 3.886123 ACATTATTGGCCTGTCAGTACC 58.114 45.455 3.32 0.66 0.00 3.34
5981 6869 2.758130 TGGCCTGTCAGTACCATATGA 58.242 47.619 3.32 0.00 0.00 2.15
5999 6887 1.270625 TGACATGGTTTCTCGGTGGAC 60.271 52.381 0.00 0.00 0.00 4.02
6018 6906 6.828785 GGTGGACTGGACAAATTCTTACATAT 59.171 38.462 0.00 0.00 0.00 1.78
6032 6920 4.461781 TCTTACATATACCGCCTAGGCTTC 59.538 45.833 30.55 3.32 46.52 3.86
6033 6921 2.605257 ACATATACCGCCTAGGCTTCA 58.395 47.619 30.55 15.54 46.52 3.02
6046 6934 3.828875 AGGCTTCAGCTTATGTCCTAC 57.171 47.619 0.00 0.00 41.70 3.18
6048 6936 1.861575 GCTTCAGCTTATGTCCTACGC 59.138 52.381 0.00 0.00 38.21 4.42
6054 6942 1.605710 GCTTATGTCCTACGCGAGGTA 59.394 52.381 15.93 9.57 46.76 3.08
6061 6949 0.104304 CCTACGCGAGGTATTTGGCT 59.896 55.000 15.93 0.00 40.98 4.75
6079 6967 2.280628 GCTGTCGCCTAGCAAATAAGT 58.719 47.619 0.00 0.00 40.81 2.24
6101 6989 0.582005 CGCTTAGGCACCGCTATTTC 59.418 55.000 0.00 0.00 38.60 2.17
6102 6990 0.945099 GCTTAGGCACCGCTATTTCC 59.055 55.000 0.00 0.00 38.54 3.13
6103 6991 1.745827 GCTTAGGCACCGCTATTTCCA 60.746 52.381 0.00 0.00 38.54 3.53
6104 6992 2.851195 CTTAGGCACCGCTATTTCCAT 58.149 47.619 0.00 0.00 0.00 3.41
6105 6993 2.543777 TAGGCACCGCTATTTCCATC 57.456 50.000 0.00 0.00 0.00 3.51
6106 6994 0.546122 AGGCACCGCTATTTCCATCA 59.454 50.000 0.00 0.00 0.00 3.07
6107 6995 0.947244 GGCACCGCTATTTCCATCAG 59.053 55.000 0.00 0.00 0.00 2.90
6108 6996 1.475034 GGCACCGCTATTTCCATCAGA 60.475 52.381 0.00 0.00 0.00 3.27
6109 6997 1.869767 GCACCGCTATTTCCATCAGAG 59.130 52.381 0.00 0.00 0.00 3.35
6110 6998 2.487934 CACCGCTATTTCCATCAGAGG 58.512 52.381 0.00 0.00 35.59 3.69
6111 6999 2.119495 ACCGCTATTTCCATCAGAGGT 58.881 47.619 0.00 0.00 37.61 3.85
6112 7000 2.505819 ACCGCTATTTCCATCAGAGGTT 59.494 45.455 0.00 0.00 39.11 3.50
6113 7001 3.709653 ACCGCTATTTCCATCAGAGGTTA 59.290 43.478 0.00 0.00 39.11 2.85
6114 7002 4.348168 ACCGCTATTTCCATCAGAGGTTAT 59.652 41.667 0.00 0.00 39.11 1.89
6115 7003 4.692625 CCGCTATTTCCATCAGAGGTTATG 59.307 45.833 0.00 0.00 0.00 1.90
6116 7004 5.511373 CCGCTATTTCCATCAGAGGTTATGA 60.511 44.000 0.00 0.00 0.00 2.15
6117 7005 6.169094 CGCTATTTCCATCAGAGGTTATGAT 58.831 40.000 0.00 0.00 37.90 2.45
6118 7006 6.652481 CGCTATTTCCATCAGAGGTTATGATT 59.348 38.462 0.00 0.00 35.20 2.57
6119 7007 7.360691 CGCTATTTCCATCAGAGGTTATGATTG 60.361 40.741 0.00 0.00 35.20 2.67
6120 7008 7.663081 GCTATTTCCATCAGAGGTTATGATTGA 59.337 37.037 0.00 0.00 35.20 2.57
6121 7009 9.217278 CTATTTCCATCAGAGGTTATGATTGAG 57.783 37.037 0.00 0.00 35.20 3.02
6122 7010 4.965814 TCCATCAGAGGTTATGATTGAGC 58.034 43.478 0.00 0.00 35.20 4.26
6123 7011 4.657504 TCCATCAGAGGTTATGATTGAGCT 59.342 41.667 0.00 0.00 35.20 4.09
6124 7012 5.840693 TCCATCAGAGGTTATGATTGAGCTA 59.159 40.000 0.00 0.00 35.20 3.32
6129 7017 6.779539 TCAGAGGTTATGATTGAGCTATGAGA 59.220 38.462 0.00 0.00 36.89 3.27
6151 7039 2.224606 AGTCTGATGTTGTGCACCTTG 58.775 47.619 15.69 0.00 0.00 3.61
6152 7040 2.158769 AGTCTGATGTTGTGCACCTTGA 60.159 45.455 15.69 0.20 0.00 3.02
6154 7042 1.267806 CTGATGTTGTGCACCTTGACC 59.732 52.381 15.69 0.00 0.00 4.02
6156 7044 1.267806 GATGTTGTGCACCTTGACCAG 59.732 52.381 15.69 0.00 0.00 4.00
6157 7045 0.254462 TGTTGTGCACCTTGACCAGA 59.746 50.000 15.69 0.00 0.00 3.86
6160 7048 2.362077 GTTGTGCACCTTGACCAGATTT 59.638 45.455 15.69 0.00 0.00 2.17
6161 7049 3.500448 TGTGCACCTTGACCAGATTTA 57.500 42.857 15.69 0.00 0.00 1.40
6162 7050 3.411446 TGTGCACCTTGACCAGATTTAG 58.589 45.455 15.69 0.00 0.00 1.85
6163 7051 3.181445 TGTGCACCTTGACCAGATTTAGT 60.181 43.478 15.69 0.00 0.00 2.24
6213 7107 2.621338 TCTTGTATTCCGCTCTTGCTG 58.379 47.619 0.00 0.00 36.97 4.41
6238 7132 3.127721 GGTGGCTGAAAATAGCTGTTCTC 59.872 47.826 0.00 0.00 43.22 2.87
6255 7149 4.695455 TGTTCTCTTGCCAATAGTAGTTGC 59.305 41.667 0.00 0.00 0.00 4.17
6261 7155 2.290896 TGCCAATAGTAGTTGCAAGGCT 60.291 45.455 19.13 11.59 41.33 4.58
6262 7156 2.098117 GCCAATAGTAGTTGCAAGGCTG 59.902 50.000 13.22 0.00 37.89 4.85
6267 7161 1.142870 AGTAGTTGCAAGGCTGAACCA 59.857 47.619 0.00 0.00 43.14 3.67
6280 7174 1.946768 CTGAACCATTGGTCGTGTTGT 59.053 47.619 9.22 0.00 33.12 3.32
6281 7175 2.357637 CTGAACCATTGGTCGTGTTGTT 59.642 45.455 9.22 0.00 33.12 2.83
6321 7215 1.754803 TCCACTCGGCGAATCTTACAT 59.245 47.619 12.13 0.00 0.00 2.29
6361 7255 7.323656 GTGAGCACATATGAAACTTGTACAAAC 59.676 37.037 10.38 2.77 0.00 2.93
6363 7257 7.584987 AGCACATATGAAACTTGTACAAACTC 58.415 34.615 10.38 6.97 0.00 3.01
6380 7274 3.457610 ACTCGGTAGGTTGTTCGAAAA 57.542 42.857 0.00 0.00 0.00 2.29
6381 7275 3.999046 ACTCGGTAGGTTGTTCGAAAAT 58.001 40.909 0.00 0.00 0.00 1.82
6382 7276 5.138125 ACTCGGTAGGTTGTTCGAAAATA 57.862 39.130 0.00 0.00 0.00 1.40
6383 7277 5.727434 ACTCGGTAGGTTGTTCGAAAATAT 58.273 37.500 0.00 0.00 0.00 1.28
6384 7278 6.168389 ACTCGGTAGGTTGTTCGAAAATATT 58.832 36.000 0.00 0.00 0.00 1.28
6385 7279 6.091713 ACTCGGTAGGTTGTTCGAAAATATTG 59.908 38.462 0.00 0.00 0.00 1.90
6386 7280 5.933463 TCGGTAGGTTGTTCGAAAATATTGT 59.067 36.000 0.00 0.00 0.00 2.71
6387 7281 6.427547 TCGGTAGGTTGTTCGAAAATATTGTT 59.572 34.615 0.00 0.00 0.00 2.83
6388 7282 7.041235 TCGGTAGGTTGTTCGAAAATATTGTTT 60.041 33.333 0.00 0.00 0.00 2.83
6389 7283 7.592164 CGGTAGGTTGTTCGAAAATATTGTTTT 59.408 33.333 0.00 0.00 0.00 2.43
6390 7284 8.908678 GGTAGGTTGTTCGAAAATATTGTTTTC 58.091 33.333 0.00 8.18 35.63 2.29
6391 7285 7.940178 AGGTTGTTCGAAAATATTGTTTTCC 57.060 32.000 0.00 1.41 35.57 3.13
6392 7286 7.493367 AGGTTGTTCGAAAATATTGTTTTCCA 58.507 30.769 0.00 3.53 35.57 3.53
6393 7287 7.436970 AGGTTGTTCGAAAATATTGTTTTCCAC 59.563 33.333 0.00 9.53 35.57 4.02
6394 7288 7.436970 GGTTGTTCGAAAATATTGTTTTCCACT 59.563 33.333 0.00 0.00 35.57 4.00
6395 7289 8.476925 GTTGTTCGAAAATATTGTTTTCCACTC 58.523 33.333 0.00 3.40 35.57 3.51
6396 7290 7.708051 TGTTCGAAAATATTGTTTTCCACTCA 58.292 30.769 0.00 5.31 35.57 3.41
6397 7291 8.356657 TGTTCGAAAATATTGTTTTCCACTCAT 58.643 29.630 0.00 0.00 35.57 2.90
6398 7292 8.850452 GTTCGAAAATATTGTTTTCCACTCATC 58.150 33.333 0.00 0.00 35.57 2.92
6399 7293 7.535139 TCGAAAATATTGTTTTCCACTCATCC 58.465 34.615 11.56 0.00 35.57 3.51
6400 7294 7.175816 TCGAAAATATTGTTTTCCACTCATCCA 59.824 33.333 11.56 0.00 35.57 3.41
6401 7295 7.812191 CGAAAATATTGTTTTCCACTCATCCAA 59.188 33.333 11.56 0.00 35.57 3.53
6402 7296 9.143631 GAAAATATTGTTTTCCACTCATCCAAG 57.856 33.333 7.23 0.00 33.54 3.61
6403 7297 8.421249 AAATATTGTTTTCCACTCATCCAAGA 57.579 30.769 0.00 0.00 0.00 3.02
6404 7298 8.421249 AATATTGTTTTCCACTCATCCAAGAA 57.579 30.769 0.00 0.00 0.00 2.52
6405 7299 6.729690 ATTGTTTTCCACTCATCCAAGAAA 57.270 33.333 0.00 0.00 0.00 2.52
6406 7300 6.729690 TTGTTTTCCACTCATCCAAGAAAT 57.270 33.333 0.00 0.00 0.00 2.17
6407 7301 6.331369 TGTTTTCCACTCATCCAAGAAATC 57.669 37.500 0.00 0.00 0.00 2.17
6408 7302 6.070656 TGTTTTCCACTCATCCAAGAAATCT 58.929 36.000 0.00 0.00 0.00 2.40
6409 7303 6.016024 TGTTTTCCACTCATCCAAGAAATCTG 60.016 38.462 0.00 0.00 0.00 2.90
6410 7304 5.503634 TTCCACTCATCCAAGAAATCTGA 57.496 39.130 0.00 0.00 0.00 3.27
6411 7305 5.503634 TCCACTCATCCAAGAAATCTGAA 57.496 39.130 0.00 0.00 0.00 3.02
6412 7306 5.879763 TCCACTCATCCAAGAAATCTGAAA 58.120 37.500 0.00 0.00 0.00 2.69
6413 7307 6.306199 TCCACTCATCCAAGAAATCTGAAAA 58.694 36.000 0.00 0.00 0.00 2.29
6414 7308 6.777091 TCCACTCATCCAAGAAATCTGAAAAA 59.223 34.615 0.00 0.00 0.00 1.94
6415 7309 7.040201 TCCACTCATCCAAGAAATCTGAAAAAG 60.040 37.037 0.00 0.00 0.00 2.27
6416 7310 7.040201 CCACTCATCCAAGAAATCTGAAAAAGA 60.040 37.037 0.00 0.00 39.94 2.52
6418 7312 9.745018 ACTCATCCAAGAAATCTGAAAAAGATA 57.255 29.630 0.00 0.00 45.37 1.98
6420 7314 8.960591 TCATCCAAGAAATCTGAAAAAGATACC 58.039 33.333 0.00 0.00 45.37 2.73
6421 7315 7.703058 TCCAAGAAATCTGAAAAAGATACCC 57.297 36.000 0.00 0.00 45.37 3.69
6422 7316 6.374333 TCCAAGAAATCTGAAAAAGATACCCG 59.626 38.462 0.00 0.00 45.37 5.28
6423 7317 5.819825 AGAAATCTGAAAAAGATACCCGC 57.180 39.130 0.00 0.00 45.37 6.13
6424 7318 5.253330 AGAAATCTGAAAAAGATACCCGCA 58.747 37.500 0.00 0.00 45.37 5.69
6425 7319 5.888161 AGAAATCTGAAAAAGATACCCGCAT 59.112 36.000 0.00 0.00 45.37 4.73
6426 7320 5.505173 AATCTGAAAAAGATACCCGCATG 57.495 39.130 0.00 0.00 45.37 4.06
6427 7321 2.682856 TCTGAAAAAGATACCCGCATGC 59.317 45.455 7.91 7.91 0.00 4.06
6428 7322 2.423185 CTGAAAAAGATACCCGCATGCA 59.577 45.455 19.57 0.00 0.00 3.96
6429 7323 2.822561 TGAAAAAGATACCCGCATGCAA 59.177 40.909 19.57 0.00 0.00 4.08
6430 7324 3.119531 TGAAAAAGATACCCGCATGCAAG 60.120 43.478 19.57 10.56 0.00 4.01
6431 7325 2.128771 AAAGATACCCGCATGCAAGT 57.871 45.000 19.57 16.16 0.00 3.16
6432 7326 1.382522 AAGATACCCGCATGCAAGTG 58.617 50.000 19.57 4.85 0.00 3.16
6433 7327 0.541392 AGATACCCGCATGCAAGTGA 59.459 50.000 19.57 0.00 0.00 3.41
6434 7328 0.657840 GATACCCGCATGCAAGTGAC 59.342 55.000 19.57 8.66 0.00 3.67
6435 7329 0.253044 ATACCCGCATGCAAGTGACT 59.747 50.000 19.57 1.20 0.00 3.41
6436 7330 0.391130 TACCCGCATGCAAGTGACTC 60.391 55.000 19.57 0.00 0.00 3.36
6437 7331 1.672030 CCCGCATGCAAGTGACTCA 60.672 57.895 19.57 0.00 0.00 3.41
6438 7332 1.499056 CCGCATGCAAGTGACTCAC 59.501 57.895 19.57 0.38 34.10 3.51
6439 7333 1.131218 CGCATGCAAGTGACTCACG 59.869 57.895 19.57 0.00 39.64 4.35
6440 7334 1.560004 CGCATGCAAGTGACTCACGT 61.560 55.000 19.57 0.00 39.64 4.49
6441 7335 0.588252 GCATGCAAGTGACTCACGTT 59.412 50.000 14.21 0.00 39.64 3.99
6442 7336 1.398960 GCATGCAAGTGACTCACGTTC 60.399 52.381 14.21 0.00 39.64 3.95
6443 7337 1.866601 CATGCAAGTGACTCACGTTCA 59.133 47.619 3.46 1.90 39.64 3.18
6444 7338 1.570813 TGCAAGTGACTCACGTTCAG 58.429 50.000 3.46 0.00 39.64 3.02
6445 7339 1.134818 TGCAAGTGACTCACGTTCAGT 60.135 47.619 3.46 0.00 39.64 3.41
6446 7340 1.933853 GCAAGTGACTCACGTTCAGTT 59.066 47.619 3.46 3.47 39.64 3.16
6447 7341 2.351726 GCAAGTGACTCACGTTCAGTTT 59.648 45.455 6.14 0.00 39.64 2.66
6448 7342 3.554324 GCAAGTGACTCACGTTCAGTTTA 59.446 43.478 6.14 0.00 39.64 2.01
6449 7343 4.033587 GCAAGTGACTCACGTTCAGTTTAA 59.966 41.667 6.14 0.00 39.64 1.52
6450 7344 5.728255 CAAGTGACTCACGTTCAGTTTAAG 58.272 41.667 6.14 0.00 39.64 1.85
6451 7345 5.258456 AGTGACTCACGTTCAGTTTAAGA 57.742 39.130 3.46 0.00 39.64 2.10
6452 7346 5.844004 AGTGACTCACGTTCAGTTTAAGAT 58.156 37.500 3.46 0.00 39.64 2.40
6453 7347 6.281405 AGTGACTCACGTTCAGTTTAAGATT 58.719 36.000 3.46 0.00 39.64 2.40
6454 7348 6.761714 AGTGACTCACGTTCAGTTTAAGATTT 59.238 34.615 3.46 0.00 39.64 2.17
6455 7349 7.042658 AGTGACTCACGTTCAGTTTAAGATTTC 60.043 37.037 3.46 0.00 39.64 2.17
6456 7350 6.759356 TGACTCACGTTCAGTTTAAGATTTCA 59.241 34.615 0.00 0.00 0.00 2.69
6457 7351 7.279090 TGACTCACGTTCAGTTTAAGATTTCAA 59.721 33.333 0.00 0.00 0.00 2.69
6458 7352 7.630924 ACTCACGTTCAGTTTAAGATTTCAAG 58.369 34.615 0.00 0.00 0.00 3.02
6459 7353 7.280205 ACTCACGTTCAGTTTAAGATTTCAAGT 59.720 33.333 0.00 0.00 0.00 3.16
6460 7354 7.981142 TCACGTTCAGTTTAAGATTTCAAGTT 58.019 30.769 0.00 0.00 0.00 2.66
6461 7355 8.120465 TCACGTTCAGTTTAAGATTTCAAGTTC 58.880 33.333 0.00 0.00 0.00 3.01
6462 7356 7.376072 CACGTTCAGTTTAAGATTTCAAGTTCC 59.624 37.037 0.00 0.00 0.00 3.62
6463 7357 6.573725 CGTTCAGTTTAAGATTTCAAGTTCCG 59.426 38.462 0.00 0.00 0.00 4.30
6464 7358 7.415229 GTTCAGTTTAAGATTTCAAGTTCCGT 58.585 34.615 0.00 0.00 0.00 4.69
6465 7359 6.954944 TCAGTTTAAGATTTCAAGTTCCGTG 58.045 36.000 0.00 0.00 0.00 4.94
6466 7360 6.017440 TCAGTTTAAGATTTCAAGTTCCGTGG 60.017 38.462 0.00 0.00 0.00 4.94
6467 7361 6.017440 CAGTTTAAGATTTCAAGTTCCGTGGA 60.017 38.462 0.00 0.00 0.00 4.02
6468 7362 6.204882 AGTTTAAGATTTCAAGTTCCGTGGAG 59.795 38.462 0.00 0.00 0.00 3.86
6469 7363 4.351874 AAGATTTCAAGTTCCGTGGAGA 57.648 40.909 0.00 0.00 0.00 3.71
6470 7364 4.559862 AGATTTCAAGTTCCGTGGAGAT 57.440 40.909 0.00 0.00 0.00 2.75
6471 7365 4.256920 AGATTTCAAGTTCCGTGGAGATG 58.743 43.478 0.00 0.00 0.00 2.90
6472 7366 3.762407 TTTCAAGTTCCGTGGAGATGA 57.238 42.857 0.00 0.00 0.00 2.92
6473 7367 2.743636 TCAAGTTCCGTGGAGATGAC 57.256 50.000 0.00 0.00 0.00 3.06
6474 7368 1.967779 TCAAGTTCCGTGGAGATGACA 59.032 47.619 0.00 0.00 0.00 3.58
6475 7369 2.367241 TCAAGTTCCGTGGAGATGACAA 59.633 45.455 0.00 0.00 0.00 3.18
6476 7370 2.457366 AGTTCCGTGGAGATGACAAC 57.543 50.000 0.00 0.00 0.00 3.32
6477 7371 1.971357 AGTTCCGTGGAGATGACAACT 59.029 47.619 0.00 0.00 0.00 3.16
6478 7372 2.368875 AGTTCCGTGGAGATGACAACTT 59.631 45.455 0.00 0.00 0.00 2.66
6479 7373 2.455674 TCCGTGGAGATGACAACTTG 57.544 50.000 0.00 0.00 0.00 3.16
6480 7374 1.691976 TCCGTGGAGATGACAACTTGT 59.308 47.619 0.00 0.00 0.00 3.16
6481 7375 2.104111 TCCGTGGAGATGACAACTTGTT 59.896 45.455 0.00 0.00 0.00 2.83
6482 7376 2.878406 CCGTGGAGATGACAACTTGTTT 59.122 45.455 0.00 0.00 0.00 2.83
6483 7377 3.303990 CCGTGGAGATGACAACTTGTTTG 60.304 47.826 0.00 0.00 41.49 2.93
6484 7378 3.632189 GTGGAGATGACAACTTGTTTGC 58.368 45.455 0.00 0.00 39.01 3.68
6485 7379 2.290367 TGGAGATGACAACTTGTTTGCG 59.710 45.455 0.00 0.00 39.01 4.85
6486 7380 2.548057 GGAGATGACAACTTGTTTGCGA 59.452 45.455 0.00 0.00 39.01 5.10
6487 7381 3.003275 GGAGATGACAACTTGTTTGCGAA 59.997 43.478 0.00 0.00 39.01 4.70
6488 7382 4.320494 GGAGATGACAACTTGTTTGCGAAT 60.320 41.667 0.00 0.00 39.01 3.34
6489 7383 5.186996 AGATGACAACTTGTTTGCGAATT 57.813 34.783 0.00 0.00 39.01 2.17
6490 7384 4.977963 AGATGACAACTTGTTTGCGAATTG 59.022 37.500 0.00 0.00 39.01 2.32
6491 7385 4.103365 TGACAACTTGTTTGCGAATTGT 57.897 36.364 3.54 3.54 39.01 2.71
6492 7386 4.101942 TGACAACTTGTTTGCGAATTGTC 58.898 39.130 18.16 18.16 43.90 3.18
6493 7387 4.101942 GACAACTTGTTTGCGAATTGTCA 58.898 39.130 19.34 0.00 43.38 3.58
6494 7388 4.489810 ACAACTTGTTTGCGAATTGTCAA 58.510 34.783 0.00 0.00 39.01 3.18
6495 7389 4.926238 ACAACTTGTTTGCGAATTGTCAAA 59.074 33.333 0.00 0.00 39.01 2.69
6496 7390 5.406780 ACAACTTGTTTGCGAATTGTCAAAA 59.593 32.000 0.00 0.00 39.01 2.44
6497 7391 6.073548 ACAACTTGTTTGCGAATTGTCAAAAA 60.074 30.769 0.00 0.00 39.01 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 6.972901 TGTTAGAACTCTTATGCTACATGTCG 59.027 38.462 0.00 0.00 0.00 4.35
23 24 8.700051 AGATGTTAGAACTCTTATGCTACATGT 58.300 33.333 2.69 2.69 0.00 3.21
30 31 7.766278 TGGAAAGAGATGTTAGAACTCTTATGC 59.234 37.037 0.00 0.00 46.03 3.14
35 36 5.544176 TGGTGGAAAGAGATGTTAGAACTCT 59.456 40.000 0.00 0.00 41.86 3.24
67 68 7.437267 GCGTTATATGTGAGTGTGTTAGGTAAT 59.563 37.037 0.00 0.00 0.00 1.89
81 82 4.365899 AGAACTCGTGCGTTATATGTGA 57.634 40.909 0.00 0.00 0.00 3.58
88 89 1.606224 GGGGAAAGAACTCGTGCGTTA 60.606 52.381 0.00 0.00 0.00 3.18
89 90 0.883370 GGGGAAAGAACTCGTGCGTT 60.883 55.000 0.00 0.00 0.00 4.84
90 91 1.301479 GGGGAAAGAACTCGTGCGT 60.301 57.895 0.00 0.00 0.00 5.24
132 133 2.053627 CATGCCAAGTCACTTTTTCGC 58.946 47.619 0.00 0.00 0.00 4.70
133 134 3.354089 ACATGCCAAGTCACTTTTTCG 57.646 42.857 0.00 0.00 0.00 3.46
134 135 6.322491 GGTATACATGCCAAGTCACTTTTTC 58.678 40.000 5.01 0.00 32.29 2.29
139 140 2.158957 CGGGTATACATGCCAAGTCACT 60.159 50.000 5.01 0.00 33.83 3.41
209 212 6.804295 GCACGTAATTTTGGTTATTGTCATGA 59.196 34.615 0.00 0.00 0.00 3.07
212 215 6.320494 AGCACGTAATTTTGGTTATTGTCA 57.680 33.333 0.00 0.00 0.00 3.58
248 251 7.451877 ACGAATGATATGGACAACTAGGTATCT 59.548 37.037 0.00 0.00 0.00 1.98
256 259 5.977635 TCTCAACGAATGATATGGACAACT 58.022 37.500 0.00 0.00 37.44 3.16
273 276 7.865706 ATATGTTCTACCCAACATTCTCAAC 57.134 36.000 4.25 0.00 43.17 3.18
281 284 8.262227 CACTTTAGGTATATGTTCTACCCAACA 58.738 37.037 0.00 0.00 39.63 3.33
287 290 8.601476 GTTGTGCACTTTAGGTATATGTTCTAC 58.399 37.037 19.41 0.00 0.00 2.59
322 325 2.894126 AGAATGCGATTCGAGGGTATCT 59.106 45.455 10.88 1.35 43.92 1.98
337 342 2.098117 GTGCTTGGTGTCCATAGAATGC 59.902 50.000 0.00 0.00 31.53 3.56
368 373 1.112916 TGGCTCTGAAGGTGACACGA 61.113 55.000 0.00 0.00 0.00 4.35
379 384 2.434336 ACAGTACAGTGTTTGGCTCTGA 59.566 45.455 0.00 0.00 40.17 3.27
397 402 0.388649 AACCTAACGAGCGCAGACAG 60.389 55.000 11.47 5.92 0.00 3.51
398 403 0.032952 AAACCTAACGAGCGCAGACA 59.967 50.000 11.47 0.00 0.00 3.41
403 408 1.126296 GTCAGAAAACCTAACGAGCGC 59.874 52.381 0.00 0.00 0.00 5.92
405 410 6.663944 ATTATGTCAGAAAACCTAACGAGC 57.336 37.500 0.00 0.00 0.00 5.03
419 424 7.382488 CGGAGGTAACATACAGAATTATGTCAG 59.618 40.741 9.38 6.16 41.02 3.51
490 497 4.521146 CATAATGGCTAGGACATGGATCC 58.479 47.826 4.20 4.20 39.28 3.36
501 514 7.275888 TCCAACAATTAAGCATAATGGCTAG 57.724 36.000 0.00 0.00 45.07 3.42
507 520 6.543430 TTGGCTCCAACAATTAAGCATAAT 57.457 33.333 0.00 0.00 36.47 1.28
508 521 5.991933 TTGGCTCCAACAATTAAGCATAA 57.008 34.783 0.00 0.00 36.47 1.90
521 534 3.080300 ACGGATGTAATTTGGCTCCAA 57.920 42.857 0.00 0.00 0.00 3.53
532 545 2.864882 GCGGCATAAGCTACGGATGTAA 60.865 50.000 0.00 0.00 41.70 2.41
582 595 9.216117 GCAGGGAGATTATAACGTGTAATAATT 57.784 33.333 10.61 0.00 30.32 1.40
583 596 7.822822 GGCAGGGAGATTATAACGTGTAATAAT 59.177 37.037 9.56 9.56 32.32 1.28
584 597 7.156673 GGCAGGGAGATTATAACGTGTAATAA 58.843 38.462 6.48 4.22 0.00 1.40
585 598 6.268158 TGGCAGGGAGATTATAACGTGTAATA 59.732 38.462 6.48 0.00 0.00 0.98
588 601 3.962063 TGGCAGGGAGATTATAACGTGTA 59.038 43.478 0.00 0.00 0.00 2.90
608 621 9.003658 ACGGATGCTTATTCTTTTCTATTATGG 57.996 33.333 0.00 0.00 0.00 2.74
609 622 9.817365 CACGGATGCTTATTCTTTTCTATTATG 57.183 33.333 0.00 0.00 0.00 1.90
613 626 8.398665 GTTTCACGGATGCTTATTCTTTTCTAT 58.601 33.333 0.00 0.00 0.00 1.98
651 664 3.744660 TGCTCTCAAAAGGAGGTTCTTC 58.255 45.455 0.00 0.00 44.19 2.87
668 681 3.883489 AGTAGGGTTTGTTGAAGTTGCTC 59.117 43.478 0.00 0.00 0.00 4.26
858 1299 3.695816 GTGTGCTTTTCCTTCTTGTGTC 58.304 45.455 0.00 0.00 0.00 3.67
1875 2341 1.571919 CTTCTAACTGCCCCGATTCG 58.428 55.000 0.00 0.00 0.00 3.34
1881 2347 2.046314 TGCGCTTCTAACTGCCCC 60.046 61.111 9.73 0.00 0.00 5.80
1890 2356 1.963338 GACAAGCCAGTGCGCTTCT 60.963 57.895 9.73 4.18 46.06 2.85
1896 2362 0.035630 ATCTCCTGACAAGCCAGTGC 60.036 55.000 0.00 0.00 37.95 4.40
2061 2527 4.334203 GTGTACACATCCTTGAACACAACA 59.666 41.667 21.14 0.00 36.00 3.33
2112 2578 3.244911 TGGGTGTCTTCTTCCTTTCCATC 60.245 47.826 0.00 0.00 0.00 3.51
2163 2629 0.975040 ATCGGCTCCTCTCAAGCTGT 60.975 55.000 4.05 0.00 44.76 4.40
2229 2695 2.040278 TGAGGTCTTGTTCATCCCAAGG 59.960 50.000 0.00 0.00 39.78 3.61
2262 2728 3.746900 GGTGTTAACCGCTATCCGT 57.253 52.632 2.48 0.00 36.51 4.69
2274 2740 3.694072 GCATTACAATGAGGCAGGTGTTA 59.306 43.478 6.13 0.00 38.70 2.41
2313 2779 4.908601 TCCACTGAGTATTGACAATGGT 57.091 40.909 11.05 0.00 0.00 3.55
2316 2782 5.255687 TGCATTCCACTGAGTATTGACAAT 58.744 37.500 5.87 5.87 0.00 2.71
2378 2844 3.685756 CCAAACAATCCATGATTTGGCAC 59.314 43.478 10.93 0.00 46.01 5.01
2592 3058 3.952675 ACCAGCGCACGCAACAAG 61.953 61.111 18.24 3.26 44.88 3.16
2865 3331 8.633561 TCTTCGTCATTGTTCATAGATCTGTAT 58.366 33.333 5.18 0.00 0.00 2.29
2905 3371 4.757657 TCTCTCAGACATTAGAGGCGATAC 59.242 45.833 0.00 0.00 39.79 2.24
3240 3706 5.814764 ACATAGCAGCAAGAAAGAAGATG 57.185 39.130 0.00 0.00 0.00 2.90
3300 3766 3.325135 GCCCAAGAGTACATATAGCCTGT 59.675 47.826 0.00 0.00 0.00 4.00
3414 3880 3.992943 ACTTCATAATCCGTTGGACCA 57.007 42.857 0.00 0.00 32.98 4.02
3609 4075 4.300189 TGTCATTTCCAAAACGAACAGG 57.700 40.909 0.00 0.00 0.00 4.00
3682 4153 4.568072 TGTATGATACTGCCTGGTGTTT 57.432 40.909 4.03 0.00 0.00 2.83
3687 4158 6.705302 ACTGATTATGTATGATACTGCCTGG 58.295 40.000 4.03 0.00 0.00 4.45
3705 4176 9.463902 AAAGAATCTCAAGATGATGAACTGATT 57.536 29.630 0.00 0.00 34.49 2.57
3770 4241 2.614779 CACTGATATATCTGCTGCGGG 58.385 52.381 16.99 0.00 0.00 6.13
3791 4262 7.047460 AGATGGAAAGAATAAATGTGGCATC 57.953 36.000 0.00 0.00 0.00 3.91
3893 4364 4.216042 TGTCACAATTCACAGTGCATAAGG 59.784 41.667 0.00 0.00 35.76 2.69
3976 4447 0.953960 CTTGTTGCCCGTCAGGTACC 60.954 60.000 2.73 2.73 38.26 3.34
3987 4458 7.148738 CGATGATATATCAGTACACTTGTTGCC 60.149 40.741 19.73 0.00 40.64 4.52
4021 4492 8.685257 ACATATGAATGAGGAACAGGGATATA 57.315 34.615 10.38 0.00 36.54 0.86
4023 4494 7.392766 AACATATGAATGAGGAACAGGGATA 57.607 36.000 10.38 0.00 36.54 2.59
4062 4543 9.349145 GGTTAATAAAGATACAAACACGCAATT 57.651 29.630 0.00 0.00 0.00 2.32
4063 4544 8.516234 TGGTTAATAAAGATACAAACACGCAAT 58.484 29.630 0.00 0.00 0.00 3.56
4275 4756 6.143118 GCTATTTAACTGTCTGCGTCTCTATG 59.857 42.308 0.00 0.00 0.00 2.23
4284 4765 7.117812 TGTCTACAAAGCTATTTAACTGTCTGC 59.882 37.037 0.00 0.00 0.00 4.26
4381 4862 4.455877 AGGCGACTTTAAAATGACCTTGAG 59.544 41.667 0.00 0.00 37.44 3.02
4394 4891 4.529897 TCCAGTGATACTAGGCGACTTTA 58.470 43.478 0.00 0.00 43.67 1.85
4552 5062 2.842256 GCCTGATGCCTTGGCATCG 61.842 63.158 34.98 29.66 46.70 3.84
4553 5063 3.126528 GCCTGATGCCTTGGCATC 58.873 61.111 35.01 35.01 45.46 3.91
4561 5071 3.423539 TGTAGGATAATGCCTGATGCC 57.576 47.619 0.00 0.00 39.08 4.40
4633 5144 1.899142 GCTATGGTTGGGGCTTTTTGA 59.101 47.619 0.00 0.00 0.00 2.69
4668 5186 4.881019 ATAGAAGATCCTAACGCAGCAT 57.119 40.909 0.00 0.00 0.00 3.79
4714 5232 8.088365 GCTCCCAGTGTTAAAAATCACTTAAAT 58.912 33.333 0.00 0.00 42.05 1.40
4723 5241 5.256806 AGGTAGCTCCCAGTGTTAAAAAT 57.743 39.130 0.00 0.00 36.75 1.82
4750 5268 6.318648 AGTTTGACTTTGCAATTCTCACAGTA 59.681 34.615 0.00 0.00 0.00 2.74
4797 5315 9.733556 ACTACCAATGTTTGTGAAGATGTATAA 57.266 29.630 0.00 0.00 0.00 0.98
4802 5320 8.567948 ACTAAACTACCAATGTTTGTGAAGATG 58.432 33.333 0.00 0.00 38.02 2.90
4818 5336 4.814771 GGCACATCATGGTACTAAACTACC 59.185 45.833 0.00 0.00 37.31 3.18
4859 5379 5.242393 ACAGAGATGTCAGAAAAACCAATGG 59.758 40.000 0.00 0.00 0.00 3.16
4919 5440 9.328845 CAGCAAATTAATTAATGGCCTAACATT 57.671 29.630 22.06 0.00 43.13 2.71
5014 5535 6.993786 TGGAAGCAATCAATATACGAACAA 57.006 33.333 0.00 0.00 0.00 2.83
5067 5635 5.657474 TGGACCGTCTACAAAGCTATTTAG 58.343 41.667 0.00 0.00 0.00 1.85
5111 5679 2.485966 ACAGATCCAGGACAGGCTAT 57.514 50.000 0.00 0.00 0.00 2.97
5112 5680 3.117131 TGATACAGATCCAGGACAGGCTA 60.117 47.826 0.00 0.00 0.00 3.93
5114 5682 2.042464 TGATACAGATCCAGGACAGGC 58.958 52.381 0.00 0.00 0.00 4.85
5119 5687 4.819610 TCAGGATTGATACAGATCCAGGA 58.180 43.478 0.00 0.00 43.47 3.86
5138 5712 4.859798 GTGTATTGACCTCGAGTTCTTCAG 59.140 45.833 11.53 0.00 0.00 3.02
5144 5721 4.202223 ACAAGTGTGTATTGACCTCGAGTT 60.202 41.667 12.31 0.00 35.72 3.01
5149 5726 6.204688 TCATGAAACAAGTGTGTATTGACCTC 59.795 38.462 0.00 0.00 36.80 3.85
5171 5752 5.106515 CGGTGATACTAGATGTCGATGTCAT 60.107 44.000 0.00 0.00 0.00 3.06
5178 5759 2.095668 GCTCCGGTGATACTAGATGTCG 60.096 54.545 7.92 0.00 0.00 4.35
5203 5784 3.318017 ACAACTGAGAGTCGTACAATGC 58.682 45.455 0.00 0.00 0.00 3.56
5259 5840 4.947388 ACACAACAGTTCCAGCTAGAAAAA 59.053 37.500 0.00 0.00 0.00 1.94
5260 5841 4.523083 ACACAACAGTTCCAGCTAGAAAA 58.477 39.130 0.00 0.00 0.00 2.29
5261 5842 4.150897 ACACAACAGTTCCAGCTAGAAA 57.849 40.909 0.00 0.00 0.00 2.52
5262 5843 3.838244 ACACAACAGTTCCAGCTAGAA 57.162 42.857 0.00 0.00 0.00 2.10
5291 5872 8.081633 GTCCAAATTGAAGTGTATGTCATTTCA 58.918 33.333 0.00 6.58 46.08 2.69
5303 5884 4.687483 GCTTTCATGGTCCAAATTGAAGTG 59.313 41.667 0.00 0.79 30.45 3.16
5413 5999 2.023673 CAGATGGGCGCAATTAAAGGA 58.976 47.619 10.83 0.00 0.00 3.36
5426 6012 2.892425 GCCTTCGCGTCAGATGGG 60.892 66.667 5.77 0.00 36.35 4.00
5433 6019 4.072088 CGGTTGTGCCTTCGCGTC 62.072 66.667 5.77 0.00 38.08 5.19
5438 6024 0.955428 TCTGATGCGGTTGTGCCTTC 60.955 55.000 0.00 0.00 34.25 3.46
5444 6030 3.118629 ACTGATACATCTGATGCGGTTGT 60.119 43.478 17.24 8.58 0.00 3.32
5453 6039 3.832615 AGCATGCACTGATACATCTGA 57.167 42.857 21.98 0.00 0.00 3.27
5553 6256 8.562892 GCATAAGATAGCTCTCAGCATTAAAAA 58.437 33.333 1.56 0.00 45.56 1.94
5572 6275 4.058124 GTCACAACTCACAGTGCATAAGA 58.942 43.478 0.00 0.00 35.76 2.10
5637 6343 2.749076 TGCTCATGGTACTGATGTTTGC 59.251 45.455 0.00 4.08 0.00 3.68
5670 6376 5.431731 TGGAACCAGGATGTCAAGGTATAAT 59.568 40.000 0.00 0.00 33.15 1.28
5676 6382 2.119801 CTGGAACCAGGATGTCAAGG 57.880 55.000 12.54 0.00 40.17 3.61
5751 6461 5.131475 TGGTAAAGAAAGGTACAGGAACAGT 59.869 40.000 0.00 0.00 0.00 3.55
5756 6466 4.657039 ACACTGGTAAAGAAAGGTACAGGA 59.343 41.667 0.00 0.00 0.00 3.86
5757 6467 4.969484 ACACTGGTAAAGAAAGGTACAGG 58.031 43.478 0.00 0.00 0.00 4.00
5773 6483 5.633830 AAGCATCAATACAAGAACACTGG 57.366 39.130 0.00 0.00 0.00 4.00
5799 6510 6.932960 CCATATTGTCTCTGATTACATGCAGA 59.067 38.462 0.00 0.00 38.72 4.26
5804 6515 7.935755 CCAGAACCATATTGTCTCTGATTACAT 59.064 37.037 14.89 0.00 36.44 2.29
5816 6527 7.126421 AGTCAGATAAGACCAGAACCATATTGT 59.874 37.037 0.00 0.00 39.34 2.71
5874 6732 2.539142 CCTAGACACTTACACGCTAGCG 60.539 54.545 34.27 34.27 46.03 4.26
5880 6738 0.801067 GCCGCCTAGACACTTACACG 60.801 60.000 0.00 0.00 0.00 4.49
5881 6739 0.459759 GGCCGCCTAGACACTTACAC 60.460 60.000 0.71 0.00 0.00 2.90
5882 6740 0.901114 TGGCCGCCTAGACACTTACA 60.901 55.000 11.61 0.00 0.00 2.41
5883 6741 0.464452 ATGGCCGCCTAGACACTTAC 59.536 55.000 11.61 0.00 0.00 2.34
5885 6743 1.424638 ATATGGCCGCCTAGACACTT 58.575 50.000 11.61 0.00 0.00 3.16
5886 6744 2.171840 CTATATGGCCGCCTAGACACT 58.828 52.381 11.61 0.00 0.00 3.55
5887 6745 1.893801 ACTATATGGCCGCCTAGACAC 59.106 52.381 11.61 0.00 0.00 3.67
5888 6746 2.304221 ACTATATGGCCGCCTAGACA 57.696 50.000 11.61 0.00 0.00 3.41
5889 6747 3.679824 AAACTATATGGCCGCCTAGAC 57.320 47.619 11.61 0.00 0.00 2.59
5904 6780 9.461312 AAATACATGCCTATCAAGTCAAAACTA 57.539 29.630 0.00 0.00 33.48 2.24
5937 6813 7.201644 CCAATAATGTACTCGTTTGAATGCTCT 60.202 37.037 0.00 0.00 0.00 4.09
5938 6814 6.907212 CCAATAATGTACTCGTTTGAATGCTC 59.093 38.462 0.00 0.00 0.00 4.26
5940 6816 5.455525 GCCAATAATGTACTCGTTTGAATGC 59.544 40.000 0.00 0.00 0.00 3.56
5941 6817 5.971202 GGCCAATAATGTACTCGTTTGAATG 59.029 40.000 0.00 0.00 0.00 2.67
5944 6832 4.634004 CAGGCCAATAATGTACTCGTTTGA 59.366 41.667 5.01 0.00 0.00 2.69
5975 6863 3.561310 CCACCGAGAAACCATGTCATATG 59.439 47.826 0.00 0.00 0.00 1.78
5981 6869 1.056660 AGTCCACCGAGAAACCATGT 58.943 50.000 0.00 0.00 0.00 3.21
5986 6874 0.391597 TGTCCAGTCCACCGAGAAAC 59.608 55.000 0.00 0.00 0.00 2.78
5999 6887 6.073222 GGCGGTATATGTAAGAATTTGTCCAG 60.073 42.308 0.00 0.00 0.00 3.86
6032 6920 1.759994 CTCGCGTAGGACATAAGCTG 58.240 55.000 5.77 0.00 36.80 4.24
6046 6934 1.752501 CGACAGCCAAATACCTCGCG 61.753 60.000 0.00 0.00 0.00 5.87
6048 6936 2.006772 GCGACAGCCAAATACCTCG 58.993 57.895 0.00 0.00 37.42 4.63
6061 6949 2.006888 GCACTTATTTGCTAGGCGACA 58.993 47.619 0.00 0.00 39.59 4.35
6067 6955 3.248602 CCTAAGCGGCACTTATTTGCTAG 59.751 47.826 1.45 0.00 42.56 3.42
6094 6982 7.663081 TCAATCATAACCTCTGATGGAAATAGC 59.337 37.037 0.00 0.00 31.56 2.97
6096 6984 7.663081 GCTCAATCATAACCTCTGATGGAAATA 59.337 37.037 0.00 0.00 33.66 1.40
6101 6989 4.970711 AGCTCAATCATAACCTCTGATGG 58.029 43.478 0.00 0.00 33.69 3.51
6102 6990 7.384477 TCATAGCTCAATCATAACCTCTGATG 58.616 38.462 0.00 0.00 33.69 3.07
6103 6991 7.454066 TCTCATAGCTCAATCATAACCTCTGAT 59.546 37.037 0.00 0.00 34.86 2.90
6104 6992 6.779539 TCTCATAGCTCAATCATAACCTCTGA 59.220 38.462 0.00 0.00 0.00 3.27
6105 6993 6.990798 TCTCATAGCTCAATCATAACCTCTG 58.009 40.000 0.00 0.00 0.00 3.35
6106 6994 7.009550 TCTCTCATAGCTCAATCATAACCTCT 58.990 38.462 0.00 0.00 0.00 3.69
6107 6995 7.039784 ACTCTCTCATAGCTCAATCATAACCTC 60.040 40.741 0.00 0.00 0.00 3.85
6108 6996 6.782000 ACTCTCTCATAGCTCAATCATAACCT 59.218 38.462 0.00 0.00 0.00 3.50
6109 6997 6.991938 ACTCTCTCATAGCTCAATCATAACC 58.008 40.000 0.00 0.00 0.00 2.85
6110 6998 7.809331 CAGACTCTCTCATAGCTCAATCATAAC 59.191 40.741 0.00 0.00 0.00 1.89
6111 6999 7.723172 TCAGACTCTCTCATAGCTCAATCATAA 59.277 37.037 0.00 0.00 0.00 1.90
6112 7000 7.230027 TCAGACTCTCTCATAGCTCAATCATA 58.770 38.462 0.00 0.00 0.00 2.15
6113 7001 6.069994 TCAGACTCTCTCATAGCTCAATCAT 58.930 40.000 0.00 0.00 0.00 2.45
6114 7002 5.444176 TCAGACTCTCTCATAGCTCAATCA 58.556 41.667 0.00 0.00 0.00 2.57
6115 7003 6.016024 ACATCAGACTCTCTCATAGCTCAATC 60.016 42.308 0.00 0.00 0.00 2.67
6116 7004 5.834742 ACATCAGACTCTCTCATAGCTCAAT 59.165 40.000 0.00 0.00 0.00 2.57
6117 7005 5.199723 ACATCAGACTCTCTCATAGCTCAA 58.800 41.667 0.00 0.00 0.00 3.02
6118 7006 4.790937 ACATCAGACTCTCTCATAGCTCA 58.209 43.478 0.00 0.00 0.00 4.26
6119 7007 5.067674 ACAACATCAGACTCTCTCATAGCTC 59.932 44.000 0.00 0.00 0.00 4.09
6120 7008 4.955450 ACAACATCAGACTCTCTCATAGCT 59.045 41.667 0.00 0.00 0.00 3.32
6121 7009 5.042593 CACAACATCAGACTCTCTCATAGC 58.957 45.833 0.00 0.00 0.00 2.97
6122 7010 5.042593 GCACAACATCAGACTCTCTCATAG 58.957 45.833 0.00 0.00 0.00 2.23
6123 7011 4.463891 TGCACAACATCAGACTCTCTCATA 59.536 41.667 0.00 0.00 0.00 2.15
6124 7012 3.260128 TGCACAACATCAGACTCTCTCAT 59.740 43.478 0.00 0.00 0.00 2.90
6129 7017 1.696336 AGGTGCACAACATCAGACTCT 59.304 47.619 20.43 0.00 0.00 3.24
6151 7039 5.220931 GGTGCATGATCAACTAAATCTGGTC 60.221 44.000 0.00 0.00 0.00 4.02
6152 7040 4.641989 GGTGCATGATCAACTAAATCTGGT 59.358 41.667 0.00 0.00 0.00 4.00
6154 7042 6.446781 AAGGTGCATGATCAACTAAATCTG 57.553 37.500 0.00 0.00 31.75 2.90
6185 7073 6.877611 AGAGCGGAATACAAGAAAAAGAAA 57.122 33.333 0.00 0.00 0.00 2.52
6190 7078 4.419522 GCAAGAGCGGAATACAAGAAAA 57.580 40.909 0.00 0.00 0.00 2.29
6213 7107 2.558359 ACAGCTATTTTCAGCCACCAAC 59.442 45.455 0.00 0.00 42.84 3.77
6238 7132 3.428045 GCCTTGCAACTACTATTGGCAAG 60.428 47.826 15.05 15.56 40.06 4.01
6255 7149 0.523072 CGACCAATGGTTCAGCCTTG 59.477 55.000 6.30 0.00 35.25 3.61
6261 7155 2.045561 ACAACACGACCAATGGTTCA 57.954 45.000 6.30 0.00 35.25 3.18
6262 7156 3.430333 AAACAACACGACCAATGGTTC 57.570 42.857 6.30 0.00 35.25 3.62
6321 7215 1.424638 GCTCACATAGCCCCCTAGAA 58.575 55.000 0.00 0.00 46.25 2.10
6341 7235 6.708949 ACCGAGTTTGTACAAGTTTCATATGT 59.291 34.615 8.56 0.00 0.00 2.29
6361 7255 6.091713 ACAATATTTTCGAACAACCTACCGAG 59.908 38.462 0.00 0.00 32.41 4.63
6363 7257 6.173191 ACAATATTTTCGAACAACCTACCG 57.827 37.500 0.00 0.00 0.00 4.02
6376 7270 9.143631 CTTGGATGAGTGGAAAACAATATTTTC 57.856 33.333 3.97 3.97 37.60 2.29
6380 7274 8.421249 TTTCTTGGATGAGTGGAAAACAATAT 57.579 30.769 0.00 0.00 0.00 1.28
6381 7275 7.831691 TTTCTTGGATGAGTGGAAAACAATA 57.168 32.000 0.00 0.00 0.00 1.90
6382 7276 6.729690 TTTCTTGGATGAGTGGAAAACAAT 57.270 33.333 0.00 0.00 0.00 2.71
6383 7277 6.550854 AGATTTCTTGGATGAGTGGAAAACAA 59.449 34.615 0.00 0.00 31.24 2.83
6384 7278 6.016024 CAGATTTCTTGGATGAGTGGAAAACA 60.016 38.462 0.00 0.00 31.24 2.83
6385 7279 6.207417 TCAGATTTCTTGGATGAGTGGAAAAC 59.793 38.462 0.00 0.00 31.24 2.43
6386 7280 6.306199 TCAGATTTCTTGGATGAGTGGAAAA 58.694 36.000 0.00 0.00 31.24 2.29
6387 7281 5.879763 TCAGATTTCTTGGATGAGTGGAAA 58.120 37.500 0.00 0.00 0.00 3.13
6388 7282 5.503634 TCAGATTTCTTGGATGAGTGGAA 57.496 39.130 0.00 0.00 0.00 3.53
6389 7283 5.503634 TTCAGATTTCTTGGATGAGTGGA 57.496 39.130 0.00 0.00 0.00 4.02
6390 7284 6.579666 TTTTCAGATTTCTTGGATGAGTGG 57.420 37.500 0.00 0.00 0.00 4.00
6391 7285 7.879070 TCTTTTTCAGATTTCTTGGATGAGTG 58.121 34.615 0.00 0.00 0.00 3.51
6392 7286 8.647256 ATCTTTTTCAGATTTCTTGGATGAGT 57.353 30.769 0.00 0.00 39.47 3.41
6394 7288 8.960591 GGTATCTTTTTCAGATTTCTTGGATGA 58.039 33.333 0.00 0.00 39.47 2.92
6395 7289 8.193438 GGGTATCTTTTTCAGATTTCTTGGATG 58.807 37.037 0.00 0.00 39.47 3.51
6396 7290 7.067494 CGGGTATCTTTTTCAGATTTCTTGGAT 59.933 37.037 0.00 0.00 39.47 3.41
6397 7291 6.374333 CGGGTATCTTTTTCAGATTTCTTGGA 59.626 38.462 0.00 0.00 39.47 3.53
6398 7292 6.555315 CGGGTATCTTTTTCAGATTTCTTGG 58.445 40.000 0.00 0.00 39.47 3.61
6399 7293 6.030228 GCGGGTATCTTTTTCAGATTTCTTG 58.970 40.000 0.00 0.00 39.47 3.02
6400 7294 5.710099 TGCGGGTATCTTTTTCAGATTTCTT 59.290 36.000 0.00 0.00 39.47 2.52
6401 7295 5.253330 TGCGGGTATCTTTTTCAGATTTCT 58.747 37.500 0.00 0.00 39.47 2.52
6402 7296 5.560966 TGCGGGTATCTTTTTCAGATTTC 57.439 39.130 0.00 0.00 39.47 2.17
6403 7297 5.679638 GCATGCGGGTATCTTTTTCAGATTT 60.680 40.000 0.00 0.00 39.47 2.17
6404 7298 4.202050 GCATGCGGGTATCTTTTTCAGATT 60.202 41.667 0.00 0.00 39.47 2.40
6405 7299 3.316308 GCATGCGGGTATCTTTTTCAGAT 59.684 43.478 0.00 0.00 45.08 2.90
6406 7300 2.682856 GCATGCGGGTATCTTTTTCAGA 59.317 45.455 0.00 0.00 35.33 3.27
6407 7301 2.423185 TGCATGCGGGTATCTTTTTCAG 59.577 45.455 14.09 0.00 0.00 3.02
6408 7302 2.441410 TGCATGCGGGTATCTTTTTCA 58.559 42.857 14.09 0.00 0.00 2.69
6409 7303 3.119495 ACTTGCATGCGGGTATCTTTTTC 60.119 43.478 14.09 0.00 0.00 2.29
6410 7304 2.825532 ACTTGCATGCGGGTATCTTTTT 59.174 40.909 14.09 0.00 0.00 1.94
6411 7305 2.164219 CACTTGCATGCGGGTATCTTTT 59.836 45.455 14.09 0.00 0.00 2.27
6412 7306 1.745087 CACTTGCATGCGGGTATCTTT 59.255 47.619 14.09 0.00 0.00 2.52
6413 7307 1.065491 TCACTTGCATGCGGGTATCTT 60.065 47.619 14.09 0.00 0.00 2.40
6414 7308 0.541392 TCACTTGCATGCGGGTATCT 59.459 50.000 14.09 0.00 0.00 1.98
6415 7309 0.657840 GTCACTTGCATGCGGGTATC 59.342 55.000 14.09 6.89 0.00 2.24
6416 7310 0.253044 AGTCACTTGCATGCGGGTAT 59.747 50.000 14.09 1.54 0.00 2.73
6417 7311 0.391130 GAGTCACTTGCATGCGGGTA 60.391 55.000 14.09 0.00 0.00 3.69
6418 7312 1.672356 GAGTCACTTGCATGCGGGT 60.672 57.895 14.09 11.29 0.00 5.28
6419 7313 1.672030 TGAGTCACTTGCATGCGGG 60.672 57.895 14.09 10.60 0.00 6.13
6420 7314 1.499056 GTGAGTCACTTGCATGCGG 59.501 57.895 16.26 10.98 0.00 5.69
6421 7315 1.131218 CGTGAGTCACTTGCATGCG 59.869 57.895 20.64 1.59 31.34 4.73
6422 7316 2.238353 ACGTGAGTCACTTGCATGC 58.762 52.632 20.64 11.82 44.19 4.06
6434 7328 7.630924 ACTTGAAATCTTAAACTGAACGTGAG 58.369 34.615 0.00 0.00 0.00 3.51
6435 7329 7.548196 ACTTGAAATCTTAAACTGAACGTGA 57.452 32.000 0.00 0.00 0.00 4.35
6436 7330 7.376072 GGAACTTGAAATCTTAAACTGAACGTG 59.624 37.037 0.00 0.00 0.00 4.49
6437 7331 7.415229 GGAACTTGAAATCTTAAACTGAACGT 58.585 34.615 0.00 0.00 0.00 3.99
6438 7332 6.573725 CGGAACTTGAAATCTTAAACTGAACG 59.426 38.462 0.00 0.00 0.00 3.95
6439 7333 7.376072 CACGGAACTTGAAATCTTAAACTGAAC 59.624 37.037 0.00 0.00 0.00 3.18
6440 7334 7.414436 CACGGAACTTGAAATCTTAAACTGAA 58.586 34.615 0.00 0.00 0.00 3.02
6441 7335 6.017440 CCACGGAACTTGAAATCTTAAACTGA 60.017 38.462 0.00 0.00 0.00 3.41
6442 7336 6.017440 TCCACGGAACTTGAAATCTTAAACTG 60.017 38.462 0.00 0.00 0.00 3.16
6443 7337 6.059484 TCCACGGAACTTGAAATCTTAAACT 58.941 36.000 0.00 0.00 0.00 2.66
6444 7338 6.204108 TCTCCACGGAACTTGAAATCTTAAAC 59.796 38.462 0.00 0.00 0.00 2.01
6445 7339 6.292923 TCTCCACGGAACTTGAAATCTTAAA 58.707 36.000 0.00 0.00 0.00 1.52
6446 7340 5.860611 TCTCCACGGAACTTGAAATCTTAA 58.139 37.500 0.00 0.00 0.00 1.85
6447 7341 5.477607 TCTCCACGGAACTTGAAATCTTA 57.522 39.130 0.00 0.00 0.00 2.10
6448 7342 4.351874 TCTCCACGGAACTTGAAATCTT 57.648 40.909 0.00 0.00 0.00 2.40
6449 7343 4.020218 TCATCTCCACGGAACTTGAAATCT 60.020 41.667 0.00 0.00 0.00 2.40
6450 7344 4.093556 GTCATCTCCACGGAACTTGAAATC 59.906 45.833 0.00 0.00 0.00 2.17
6451 7345 4.003648 GTCATCTCCACGGAACTTGAAAT 58.996 43.478 0.00 0.00 0.00 2.17
6452 7346 3.181459 TGTCATCTCCACGGAACTTGAAA 60.181 43.478 0.00 0.00 0.00 2.69
6453 7347 2.367241 TGTCATCTCCACGGAACTTGAA 59.633 45.455 0.00 0.00 0.00 2.69
6454 7348 1.967779 TGTCATCTCCACGGAACTTGA 59.032 47.619 0.00 0.00 0.00 3.02
6455 7349 2.455674 TGTCATCTCCACGGAACTTG 57.544 50.000 0.00 0.00 0.00 3.16
6456 7350 2.368875 AGTTGTCATCTCCACGGAACTT 59.631 45.455 0.00 0.00 0.00 2.66
6457 7351 1.971357 AGTTGTCATCTCCACGGAACT 59.029 47.619 0.00 0.00 0.00 3.01
6458 7352 2.457366 AGTTGTCATCTCCACGGAAC 57.543 50.000 0.00 0.00 0.00 3.62
6459 7353 2.104111 ACAAGTTGTCATCTCCACGGAA 59.896 45.455 1.64 0.00 0.00 4.30
6460 7354 1.691976 ACAAGTTGTCATCTCCACGGA 59.308 47.619 1.64 0.00 0.00 4.69
6461 7355 2.169832 ACAAGTTGTCATCTCCACGG 57.830 50.000 1.64 0.00 0.00 4.94
6462 7356 3.849645 GCAAACAAGTTGTCATCTCCACG 60.850 47.826 9.40 0.00 39.63 4.94
6463 7357 3.632189 GCAAACAAGTTGTCATCTCCAC 58.368 45.455 9.40 0.00 39.63 4.02
6464 7358 2.290367 CGCAAACAAGTTGTCATCTCCA 59.710 45.455 9.40 0.00 39.63 3.86
6465 7359 2.548057 TCGCAAACAAGTTGTCATCTCC 59.452 45.455 9.40 0.00 39.63 3.71
6466 7360 3.878086 TCGCAAACAAGTTGTCATCTC 57.122 42.857 9.40 0.00 39.63 2.75
6467 7361 4.836125 ATTCGCAAACAAGTTGTCATCT 57.164 36.364 9.40 0.00 39.63 2.90
6468 7362 4.739716 ACAATTCGCAAACAAGTTGTCATC 59.260 37.500 9.40 0.42 39.63 2.92
6469 7363 4.681744 ACAATTCGCAAACAAGTTGTCAT 58.318 34.783 9.40 0.00 39.63 3.06
6470 7364 4.101942 GACAATTCGCAAACAAGTTGTCA 58.898 39.130 9.40 0.00 42.84 3.58
6471 7365 4.101942 TGACAATTCGCAAACAAGTTGTC 58.898 39.130 9.40 8.61 43.32 3.18
6472 7366 4.103365 TGACAATTCGCAAACAAGTTGT 57.897 36.364 1.64 1.64 39.63 3.32
6473 7367 5.447478 TTTGACAATTCGCAAACAAGTTG 57.553 34.783 0.00 0.00 40.50 3.16
6474 7368 6.473397 TTTTTGACAATTCGCAAACAAGTT 57.527 29.167 2.58 0.00 34.09 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.