Multiple sequence alignment - TraesCS5A01G505300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G505300 chr5A 100.000 4955 0 0 1 4955 670621437 670626391 0.000000e+00 9151.0
1 TraesCS5A01G505300 chr5A 93.069 101 7 0 4855 4955 394832971 394833071 1.110000e-31 148.0
2 TraesCS5A01G505300 chr5A 86.585 82 6 3 4629 4710 4610133 4610209 8.840000e-13 86.1
3 TraesCS5A01G505300 chr4D 91.340 4700 234 66 3 4631 489174379 489178976 0.000000e+00 6264.0
4 TraesCS5A01G505300 chr4B 89.022 4691 307 109 3 4593 627318193 627322775 0.000000e+00 5618.0
5 TraesCS5A01G505300 chr4B 86.420 81 8 3 4632 4710 492210876 492210797 8.840000e-13 86.1
6 TraesCS5A01G505300 chr2A 97.895 95 2 0 4861 4955 735377885 735377979 1.100000e-36 165.0
7 TraesCS5A01G505300 chr2A 97.802 91 2 0 4865 4955 36808604 36808514 1.850000e-34 158.0
8 TraesCS5A01G505300 chr2A 98.864 88 1 0 4868 4955 209848868 209848781 1.850000e-34 158.0
9 TraesCS5A01G505300 chr2A 94.231 104 4 2 4852 4955 757962623 757962724 1.850000e-34 158.0
10 TraesCS5A01G505300 chr3A 97.802 91 2 0 4865 4955 706256633 706256723 1.850000e-34 158.0
11 TraesCS5A01G505300 chr3A 96.774 93 3 0 4863 4955 325451499 325451407 6.640000e-34 156.0
12 TraesCS5A01G505300 chr3A 96.774 93 2 1 4863 4955 234941709 234941800 2.390000e-33 154.0
13 TraesCS5A01G505300 chr5D 95.789 95 3 1 4862 4955 526115701 526115607 8.590000e-33 152.0
14 TraesCS5A01G505300 chr7D 86.905 84 7 4 4629 4711 104640643 104640723 1.900000e-14 91.6
15 TraesCS5A01G505300 chr4A 85.882 85 9 3 4626 4710 18683391 18683310 2.460000e-13 87.9
16 TraesCS5A01G505300 chr7A 84.615 91 9 4 4622 4711 381248678 381248764 8.840000e-13 86.1
17 TraesCS5A01G505300 chr1D 86.585 82 6 2 4632 4713 442373856 442373780 8.840000e-13 86.1
18 TraesCS5A01G505300 chr5B 83.333 96 10 4 4620 4710 531365255 531365161 3.180000e-12 84.2
19 TraesCS5A01G505300 chr3D 83.871 93 10 5 4626 4718 525726523 525726610 3.180000e-12 84.2
20 TraesCS5A01G505300 chr6A 86.076 79 8 3 4632 4710 615393868 615393793 1.140000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G505300 chr5A 670621437 670626391 4954 False 9151 9151 100.000 1 4955 1 chr5A.!!$F3 4954
1 TraesCS5A01G505300 chr4D 489174379 489178976 4597 False 6264 6264 91.340 3 4631 1 chr4D.!!$F1 4628
2 TraesCS5A01G505300 chr4B 627318193 627322775 4582 False 5618 5618 89.022 3 4593 1 chr4B.!!$F1 4590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 546 0.036388 GTGCTCAATCACCGGGAGAA 60.036 55.000 6.32 0.0 0.0 2.87 F
513 555 0.039165 CACCGGGAGAAAAGCAAAGC 60.039 55.000 6.32 0.0 0.0 3.51 F
1337 1423 0.033109 AGAAGTAAGCCCCAATGCCC 60.033 55.000 0.00 0.0 0.0 5.36 F
2526 2616 0.038744 ATGACTGGGGCCTCTTGTTG 59.961 55.000 3.07 0.0 0.0 3.33 F
3771 3866 1.133407 GACCTGAAGAAGATCGAGCGT 59.867 52.381 0.00 0.0 0.0 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1332 1418 0.400381 GGGATTTTGGGATGGGGCAT 60.400 55.0 0.0 0.0 0.00 4.40 R
2080 2170 0.905357 GCTCCTGCCTAACTTCCTCA 59.095 55.0 0.0 0.0 0.00 3.86 R
3090 3181 0.171455 CGGAGAGTGGGAGAAGAACG 59.829 60.0 0.0 0.0 0.00 3.95 R
3792 3887 0.109643 CGACCACCGTTATGTCGTCA 60.110 55.0 0.0 0.0 44.96 4.35 R
4796 4933 0.038343 CGGATGGCACCCAAGTTTTG 60.038 55.0 0.0 0.0 36.95 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.027625 CAAACAGAGACGACCGCCC 61.028 63.158 0.00 0.00 0.00 6.13
64 65 4.680537 ACAGAGACGACCGCCCCT 62.681 66.667 0.00 0.00 0.00 4.79
124 125 4.052518 ACCCATGGCAGGTGAGGC 62.053 66.667 6.09 0.00 35.85 4.70
134 135 2.997897 GGTGAGGCGAGGTGAGGT 60.998 66.667 0.00 0.00 0.00 3.85
145 146 2.294078 GGTGAGGTGAGGTGGGAGG 61.294 68.421 0.00 0.00 0.00 4.30
170 172 3.181443 GGAAGAAGGGGAAGTGAACTGAA 60.181 47.826 0.00 0.00 0.00 3.02
171 173 3.493767 AGAAGGGGAAGTGAACTGAAC 57.506 47.619 0.00 0.00 0.00 3.18
172 174 3.049344 AGAAGGGGAAGTGAACTGAACT 58.951 45.455 0.00 0.00 0.00 3.01
173 175 2.938956 AGGGGAAGTGAACTGAACTG 57.061 50.000 0.00 0.00 0.00 3.16
174 176 2.408565 AGGGGAAGTGAACTGAACTGA 58.591 47.619 0.00 0.00 0.00 3.41
175 177 2.370189 AGGGGAAGTGAACTGAACTGAG 59.630 50.000 0.00 0.00 0.00 3.35
183 185 0.039074 AACTGAACTGAGTCGAGCGG 60.039 55.000 0.00 0.00 0.00 5.52
227 255 1.964891 CACCTGCAGCAGTCCACAG 60.965 63.158 21.26 7.08 0.00 3.66
247 275 1.202290 GCACCACAAACCAGTGACAAG 60.202 52.381 0.00 0.00 42.05 3.16
272 300 1.061033 AGGATTGGTAGGAGCCCATCT 60.061 52.381 0.00 0.00 32.89 2.90
333 373 5.675827 GCTCTTCTTTTAATGGCTTCTCTGC 60.676 44.000 0.00 0.00 0.00 4.26
343 383 2.203938 TTCTCTGCCCCCTCGGTT 60.204 61.111 0.00 0.00 0.00 4.44
351 391 4.426313 CCCCTCGGTTTCCTGCCC 62.426 72.222 0.00 0.00 0.00 5.36
372 412 3.465403 CTCGCTCCCCTGGGTCTG 61.465 72.222 12.71 2.23 36.47 3.51
376 416 2.784984 CTCCCCTGGGTCTGGGTA 59.215 66.667 12.71 0.00 42.80 3.69
377 417 1.689582 CTCCCCTGGGTCTGGGTAC 60.690 68.421 12.71 0.00 42.80 3.34
381 421 0.338814 CCCTGGGTCTGGGTACTAGT 59.661 60.000 3.97 0.00 38.42 2.57
382 422 1.486211 CCTGGGTCTGGGTACTAGTG 58.514 60.000 5.39 0.00 38.42 2.74
383 423 0.824759 CTGGGTCTGGGTACTAGTGC 59.175 60.000 5.39 3.50 38.42 4.40
386 426 2.030371 GGGTCTGGGTACTAGTGCTAC 58.970 57.143 10.95 5.25 38.42 3.58
407 447 2.044946 CAGTAGGCTGGGGTTGGC 60.045 66.667 0.00 0.00 39.01 4.52
423 463 2.564721 GGCTTGGGTGTGGCTTCAC 61.565 63.158 5.17 5.17 41.56 3.18
438 480 2.805099 GCTTCACAACTCACAAGAGAGG 59.195 50.000 0.00 0.00 44.98 3.69
439 481 3.493350 GCTTCACAACTCACAAGAGAGGA 60.493 47.826 0.00 0.00 44.98 3.71
450 492 2.099405 CAAGAGAGGAGGAGAGACCAC 58.901 57.143 0.00 0.00 42.04 4.16
451 493 1.681229 AGAGAGGAGGAGAGACCACT 58.319 55.000 0.00 0.00 42.04 4.00
488 530 1.294659 CTTCCACTTCCAGCGAGTGC 61.295 60.000 6.95 0.00 42.42 4.40
498 540 3.084579 GCGAGTGCTCAATCACCG 58.915 61.111 0.00 0.00 37.68 4.94
501 543 1.596934 GAGTGCTCAATCACCGGGA 59.403 57.895 6.32 0.00 37.68 5.14
502 544 0.460987 GAGTGCTCAATCACCGGGAG 60.461 60.000 6.32 2.93 37.68 4.30
504 546 0.036388 GTGCTCAATCACCGGGAGAA 60.036 55.000 6.32 0.00 0.00 2.87
506 548 1.073125 TGCTCAATCACCGGGAGAAAA 59.927 47.619 6.32 0.00 0.00 2.29
507 549 1.740025 GCTCAATCACCGGGAGAAAAG 59.260 52.381 6.32 4.18 0.00 2.27
508 550 1.740025 CTCAATCACCGGGAGAAAAGC 59.260 52.381 6.32 0.00 0.00 3.51
509 551 1.073125 TCAATCACCGGGAGAAAAGCA 59.927 47.619 6.32 0.00 0.00 3.91
511 553 2.286365 ATCACCGGGAGAAAAGCAAA 57.714 45.000 6.32 0.00 0.00 3.68
512 554 1.604604 TCACCGGGAGAAAAGCAAAG 58.395 50.000 6.32 0.00 0.00 2.77
513 555 0.039165 CACCGGGAGAAAAGCAAAGC 60.039 55.000 6.32 0.00 0.00 3.51
517 559 0.675633 GGGAGAAAAGCAAAGCAGCA 59.324 50.000 0.00 0.00 36.85 4.41
518 560 1.336609 GGGAGAAAAGCAAAGCAGCAG 60.337 52.381 0.00 0.00 36.85 4.24
521 563 0.947660 GAAAAGCAAAGCAGCAGGCC 60.948 55.000 0.00 0.00 46.50 5.19
522 564 1.405272 AAAAGCAAAGCAGCAGGCCT 61.405 50.000 0.00 0.00 46.50 5.19
549 602 3.420482 CTGCCGGGGAGGGGATTT 61.420 66.667 7.81 0.00 41.48 2.17
582 635 3.363351 GCTCCTTGCTTGCTTGCT 58.637 55.556 3.47 0.00 38.95 3.91
585 642 0.666577 CTCCTTGCTTGCTTGCTTGC 60.667 55.000 3.47 0.00 0.00 4.01
590 647 0.677288 TGCTTGCTTGCTTGCTTGAT 59.323 45.000 10.35 0.00 0.00 2.57
591 648 1.069513 TGCTTGCTTGCTTGCTTGATT 59.930 42.857 10.35 0.00 0.00 2.57
592 649 1.725164 GCTTGCTTGCTTGCTTGATTC 59.275 47.619 3.47 0.00 0.00 2.52
593 650 2.609737 GCTTGCTTGCTTGCTTGATTCT 60.610 45.455 3.47 0.00 0.00 2.40
594 651 3.243336 CTTGCTTGCTTGCTTGATTCTC 58.757 45.455 3.47 0.00 0.00 2.87
643 706 2.032071 CCGTCCAGTCCACCCAAC 59.968 66.667 0.00 0.00 0.00 3.77
718 781 1.281867 TCCAAGAATCCCAGCACGAAT 59.718 47.619 0.00 0.00 0.00 3.34
737 800 4.778143 CGGCGGGGAGTTCTTGGG 62.778 72.222 0.00 0.00 0.00 4.12
745 808 0.955919 GGAGTTCTTGGGCTTGGACG 60.956 60.000 0.00 0.00 0.00 4.79
756 822 2.038975 TTGGACGGAGAGAGGGGG 59.961 66.667 0.00 0.00 0.00 5.40
774 840 1.000771 GGAAAAGGTGAGGGGCCTC 60.001 63.158 0.84 0.00 43.01 4.70
776 842 2.125766 GAAAAGGTGAGGGGCCTCGT 62.126 60.000 0.84 0.00 45.48 4.18
830 896 4.856801 CCGGGCGATTCTGGGTGG 62.857 72.222 0.00 0.00 0.00 4.61
917 991 2.919666 ATTTTTGATCTTGACCCGCG 57.080 45.000 0.00 0.00 0.00 6.46
948 1031 3.846602 CTGTTTGGTTGCAGGCGGC 62.847 63.158 0.00 0.00 45.13 6.53
1332 1418 2.239654 CCATCTCAGAAGTAAGCCCCAA 59.760 50.000 0.00 0.00 0.00 4.12
1333 1419 3.117738 CCATCTCAGAAGTAAGCCCCAAT 60.118 47.826 0.00 0.00 0.00 3.16
1334 1420 3.634397 TCTCAGAAGTAAGCCCCAATG 57.366 47.619 0.00 0.00 0.00 2.82
1336 1422 1.106285 CAGAAGTAAGCCCCAATGCC 58.894 55.000 0.00 0.00 0.00 4.40
1337 1423 0.033109 AGAAGTAAGCCCCAATGCCC 60.033 55.000 0.00 0.00 0.00 5.36
1338 1424 1.001631 AAGTAAGCCCCAATGCCCC 59.998 57.895 0.00 0.00 0.00 5.80
1340 1426 1.075301 GTAAGCCCCAATGCCCCAT 60.075 57.895 0.00 0.00 0.00 4.00
1341 1427 1.115326 GTAAGCCCCAATGCCCCATC 61.115 60.000 0.00 0.00 0.00 3.51
1342 1428 2.310930 TAAGCCCCAATGCCCCATCC 62.311 60.000 0.00 0.00 0.00 3.51
1363 1449 3.575687 CCCAAAATCCCCATCTGCTAATC 59.424 47.826 0.00 0.00 0.00 1.75
1384 1470 3.818773 TCTCTTTTTAAGTTTGGGAGGCG 59.181 43.478 0.00 0.00 0.00 5.52
1385 1471 2.295070 TCTTTTTAAGTTTGGGAGGCGC 59.705 45.455 0.00 0.00 0.00 6.53
1386 1472 0.963225 TTTTAAGTTTGGGAGGCGCC 59.037 50.000 21.89 21.89 0.00 6.53
1388 1474 0.891904 TTAAGTTTGGGAGGCGCCAC 60.892 55.000 31.54 23.95 38.95 5.01
1430 1516 7.613585 TCATCAAATGCCAACTTATGATGTTT 58.386 30.769 11.86 0.00 42.80 2.83
1431 1517 7.760794 TCATCAAATGCCAACTTATGATGTTTC 59.239 33.333 11.86 0.00 42.80 2.78
1432 1518 6.990798 TCAAATGCCAACTTATGATGTTTCA 58.009 32.000 0.00 0.00 36.00 2.69
1433 1519 7.613585 TCAAATGCCAACTTATGATGTTTCAT 58.386 30.769 0.00 0.00 44.76 2.57
1434 1520 7.546316 TCAAATGCCAACTTATGATGTTTCATG 59.454 33.333 0.00 0.00 42.60 3.07
1435 1521 4.746729 TGCCAACTTATGATGTTTCATGC 58.253 39.130 0.00 0.00 42.60 4.06
1436 1522 4.463539 TGCCAACTTATGATGTTTCATGCT 59.536 37.500 0.00 0.00 42.60 3.79
1466 1552 3.795877 TCTTGCGAGCATGATTGTGATA 58.204 40.909 9.21 0.00 0.00 2.15
1511 1598 2.755952 AAAAAGGAAGGGCTGTCTGT 57.244 45.000 0.00 0.00 0.00 3.41
1512 1599 2.278332 AAAAGGAAGGGCTGTCTGTC 57.722 50.000 0.00 0.00 0.00 3.51
1517 1604 1.474143 GGAAGGGCTGTCTGTCATAGC 60.474 57.143 0.00 0.00 36.74 2.97
1523 1610 1.399791 GCTGTCTGTCATAGCTTTGGC 59.600 52.381 1.36 1.36 34.70 4.52
1546 1633 6.373186 CACTCATTGCTGTAACATCATCAT 57.627 37.500 0.00 0.00 0.00 2.45
1547 1634 6.427974 CACTCATTGCTGTAACATCATCATC 58.572 40.000 0.00 0.00 0.00 2.92
1548 1635 6.037830 CACTCATTGCTGTAACATCATCATCA 59.962 38.462 0.00 0.00 0.00 3.07
1551 1638 6.824704 TCATTGCTGTAACATCATCATCAGAA 59.175 34.615 0.00 0.00 0.00 3.02
1552 1639 6.673154 TTGCTGTAACATCATCATCAGAAG 57.327 37.500 0.00 0.00 0.00 2.85
1576 1663 8.181904 AGAAGAAGAAAATATTGCAGGTTCAA 57.818 30.769 0.00 0.00 0.00 2.69
1584 1671 9.294030 GAAAATATTGCAGGTTCAATAGACTTG 57.706 33.333 0.00 0.00 40.84 3.16
1637 1724 3.231818 ACCGGCAGTGAGCTAGTATTAT 58.768 45.455 0.00 0.00 44.79 1.28
1638 1725 4.404640 ACCGGCAGTGAGCTAGTATTATA 58.595 43.478 0.00 0.00 44.79 0.98
1639 1726 4.217983 ACCGGCAGTGAGCTAGTATTATAC 59.782 45.833 0.00 0.00 44.79 1.47
1716 1806 6.170506 TGGTGACATTGTTCTGTTATACTCC 58.829 40.000 0.00 0.00 33.40 3.85
1717 1807 6.170506 GGTGACATTGTTCTGTTATACTCCA 58.829 40.000 0.00 0.00 0.00 3.86
1718 1808 6.092259 GGTGACATTGTTCTGTTATACTCCAC 59.908 42.308 0.00 0.00 0.00 4.02
1969 2059 2.435938 GGCGTGATTTGCTCCGGA 60.436 61.111 2.93 2.93 0.00 5.14
1993 2083 2.048033 TACATCGCAAACGCCGGT 60.048 55.556 1.90 0.00 39.84 5.28
2131 2221 3.379372 CACACCCTCATGATCCACAAATC 59.621 47.826 0.00 0.00 0.00 2.17
2275 2365 0.601558 TAGAAGTCTTCGCGGCAGTT 59.398 50.000 6.13 0.00 34.02 3.16
2289 2379 2.205074 GGCAGTTACATCATCTGTCCG 58.795 52.381 0.00 0.00 39.39 4.79
2309 2399 4.221924 TCCGTCTCATCACAATTCCACTTA 59.778 41.667 0.00 0.00 0.00 2.24
2355 2445 4.963276 AATTACTTTTGCATCTGCGCTA 57.037 36.364 9.73 0.00 45.83 4.26
2400 2490 2.663826 AGTCAATCGTTCTCAGAGCC 57.336 50.000 0.00 0.00 0.00 4.70
2525 2615 1.668826 TATGACTGGGGCCTCTTGTT 58.331 50.000 3.07 0.00 0.00 2.83
2526 2616 0.038744 ATGACTGGGGCCTCTTGTTG 59.961 55.000 3.07 0.00 0.00 3.33
2572 2662 7.920160 TGATGTTCATGCTTTCTGTATAACA 57.080 32.000 0.00 0.00 0.00 2.41
2606 2696 1.963985 AGAGGCAGGAGGAAGTGATT 58.036 50.000 0.00 0.00 0.00 2.57
2677 2767 6.653020 TGAGCTAATCAACACCATCAGTTAT 58.347 36.000 0.00 0.00 34.02 1.89
2683 2773 5.375417 TCAACACCATCAGTTATTGCAAG 57.625 39.130 4.94 0.00 0.00 4.01
2694 2784 5.941058 TCAGTTATTGCAAGTCGGGATTTTA 59.059 36.000 4.94 0.00 0.00 1.52
2834 2925 7.824289 TCTTCAATTGTAACTTATGAGGTGAGG 59.176 37.037 5.13 0.00 0.00 3.86
2836 2927 8.141298 TCAATTGTAACTTATGAGGTGAGGTA 57.859 34.615 5.13 0.00 0.00 3.08
3090 3181 5.007332 CCAAAGTAACCCTCGTAATGTATGC 59.993 44.000 0.00 0.00 0.00 3.14
3101 3192 3.489785 CGTAATGTATGCGTTCTTCTCCC 59.510 47.826 0.00 0.00 31.96 4.30
3110 3201 1.546961 GTTCTTCTCCCACTCTCCGA 58.453 55.000 0.00 0.00 0.00 4.55
3112 3203 2.060050 TCTTCTCCCACTCTCCGATC 57.940 55.000 0.00 0.00 0.00 3.69
3179 3270 3.366374 CCAAAATTCCTTTCGAGGCTCAC 60.366 47.826 15.95 0.00 0.00 3.51
3184 3275 1.187087 CCTTTCGAGGCTCACTACCT 58.813 55.000 15.95 0.00 41.41 3.08
3185 3276 1.134965 CCTTTCGAGGCTCACTACCTG 60.135 57.143 15.95 0.00 37.77 4.00
3198 3289 5.880332 GCTCACTACCTGTCCAATTCATTAA 59.120 40.000 0.00 0.00 0.00 1.40
3287 3378 8.261522 TGGGACTAAAAGTTGTTTTGCTATTTT 58.738 29.630 0.00 0.00 36.51 1.82
3288 3379 9.752961 GGGACTAAAAGTTGTTTTGCTATTTTA 57.247 29.630 0.00 0.00 36.51 1.52
3321 3412 4.319177 AGTTCAAGCAAGTGTAGCCTAAG 58.681 43.478 0.00 0.00 0.00 2.18
3346 3437 3.018856 TGCACTTTATCTGGATGCTTGG 58.981 45.455 0.00 0.00 37.20 3.61
3425 3516 5.479716 TTGCTATTTTAAACTCTAGGCGC 57.520 39.130 0.00 0.00 0.00 6.53
3447 3538 7.117812 GGCGCTATTTCAAGCAAGTATAATCTA 59.882 37.037 7.64 0.00 42.91 1.98
3491 3585 1.260544 GCTTTCAATTGGCAGGGAGT 58.739 50.000 5.42 0.00 0.00 3.85
3526 3620 8.446599 TTCTCCACTTAAAGTTGTTTTCCTAG 57.553 34.615 0.00 0.00 0.00 3.02
3528 3622 7.713942 TCTCCACTTAAAGTTGTTTTCCTAGTC 59.286 37.037 0.00 0.00 0.00 2.59
3536 3630 6.673839 AGTTGTTTTCCTAGTCTAAGCTCT 57.326 37.500 0.00 0.00 0.00 4.09
3539 3633 8.648693 AGTTGTTTTCCTAGTCTAAGCTCTAAA 58.351 33.333 0.00 0.00 0.00 1.85
3606 3701 2.369860 TCATCCCTAGGCTGCTGTATTG 59.630 50.000 2.05 0.00 0.00 1.90
3644 3739 4.334759 ACTTCTGGCATGAGATCATTTTCG 59.665 41.667 0.00 0.00 33.61 3.46
3665 3760 3.068590 CGCCCATTCCTGAAAATTATGCT 59.931 43.478 0.00 0.00 0.00 3.79
3666 3761 4.441913 CGCCCATTCCTGAAAATTATGCTT 60.442 41.667 0.00 0.00 0.00 3.91
3744 3839 2.114616 GCCAAGAAGAGGGAGATGAGA 58.885 52.381 0.00 0.00 0.00 3.27
3771 3866 1.133407 GACCTGAAGAAGATCGAGCGT 59.867 52.381 0.00 0.00 0.00 5.07
3957 4055 1.273606 GTGAGCAGCACCTACTGAAGA 59.726 52.381 0.00 0.00 41.78 2.87
3958 4056 1.970640 TGAGCAGCACCTACTGAAGAA 59.029 47.619 0.00 0.00 40.25 2.52
3959 4057 2.028658 TGAGCAGCACCTACTGAAGAAG 60.029 50.000 0.00 0.00 40.25 2.85
3960 4058 1.277557 AGCAGCACCTACTGAAGAAGG 59.722 52.381 0.00 0.00 40.25 3.46
3961 4059 1.677217 GCAGCACCTACTGAAGAAGGG 60.677 57.143 0.00 0.00 40.25 3.95
3962 4060 1.065854 CAGCACCTACTGAAGAAGGGG 60.066 57.143 0.00 0.00 40.25 4.79
3963 4061 1.203313 AGCACCTACTGAAGAAGGGGA 60.203 52.381 0.00 0.00 38.70 4.81
3998 4106 4.356289 GCCGAGAAGAGAAACTCTATGAC 58.644 47.826 1.64 0.00 40.28 3.06
4000 4108 4.333095 CCGAGAAGAGAAACTCTATGACGA 59.667 45.833 1.64 0.00 40.28 4.20
4092 4200 6.591750 AGCGTACTGATAGCAAGGTATAAT 57.408 37.500 0.00 0.00 0.00 1.28
4104 4212 7.136822 AGCAAGGTATAATGTTAGATCACCA 57.863 36.000 0.00 0.00 0.00 4.17
4110 4218 9.166222 AGGTATAATGTTAGATCACCACCATTA 57.834 33.333 0.00 1.22 31.57 1.90
4111 4219 9.436957 GGTATAATGTTAGATCACCACCATTAG 57.563 37.037 0.00 0.00 30.82 1.73
4112 4220 7.986085 ATAATGTTAGATCACCACCATTAGC 57.014 36.000 0.00 0.00 30.82 3.09
4113 4221 3.792401 TGTTAGATCACCACCATTAGCG 58.208 45.455 0.00 0.00 0.00 4.26
4114 4222 3.449377 TGTTAGATCACCACCATTAGCGA 59.551 43.478 0.00 0.00 0.00 4.93
4115 4223 4.100963 TGTTAGATCACCACCATTAGCGAT 59.899 41.667 0.00 0.00 0.00 4.58
4116 4224 3.117491 AGATCACCACCATTAGCGATG 57.883 47.619 0.00 0.00 35.42 3.84
4117 4225 1.532868 GATCACCACCATTAGCGATGC 59.467 52.381 0.00 0.00 34.25 3.91
4118 4226 0.541392 TCACCACCATTAGCGATGCT 59.459 50.000 0.00 0.00 43.41 3.79
4119 4227 1.065491 TCACCACCATTAGCGATGCTT 60.065 47.619 0.00 0.00 40.44 3.91
4120 4228 1.745087 CACCACCATTAGCGATGCTTT 59.255 47.619 0.00 0.00 40.44 3.51
4121 4229 2.164219 CACCACCATTAGCGATGCTTTT 59.836 45.455 0.00 0.00 40.44 2.27
4122 4230 2.423538 ACCACCATTAGCGATGCTTTTC 59.576 45.455 0.00 0.00 40.44 2.29
4123 4231 2.539547 CCACCATTAGCGATGCTTTTCG 60.540 50.000 0.00 0.79 40.44 3.46
4132 4246 3.995506 ATGCTTTTCGCCCCCTCCG 62.996 63.158 0.00 0.00 38.05 4.63
4155 4269 4.079970 CCTCCTCCCCTTTGTTCTTTTAC 58.920 47.826 0.00 0.00 0.00 2.01
4170 4285 7.173032 TGTTCTTTTACCTATCCCTTTTCTCC 58.827 38.462 0.00 0.00 0.00 3.71
4182 4297 3.521126 CCCTTTTCTCCTCTCCAATGAGA 59.479 47.826 0.00 0.00 45.39 3.27
4299 4417 1.968540 GGTGCCTGGCTTGACTGAC 60.969 63.158 21.03 7.38 0.00 3.51
4301 4419 0.952984 GTGCCTGGCTTGACTGACTC 60.953 60.000 21.03 0.00 0.00 3.36
4302 4420 1.123861 TGCCTGGCTTGACTGACTCT 61.124 55.000 21.03 0.00 0.00 3.24
4303 4421 0.673022 GCCTGGCTTGACTGACTCTG 60.673 60.000 12.43 0.00 0.00 3.35
4305 4423 1.071385 CCTGGCTTGACTGACTCTGTT 59.929 52.381 0.00 0.00 0.00 3.16
4306 4424 2.141517 CTGGCTTGACTGACTCTGTTG 58.858 52.381 0.00 0.00 0.00 3.33
4308 4426 1.517242 GCTTGACTGACTCTGTTGGG 58.483 55.000 0.00 0.00 0.00 4.12
4310 4428 2.760374 CTTGACTGACTCTGTTGGGTC 58.240 52.381 0.00 0.00 0.00 4.46
4311 4429 1.788229 TGACTGACTCTGTTGGGTCA 58.212 50.000 0.00 0.00 39.71 4.02
4312 4430 2.115427 TGACTGACTCTGTTGGGTCAA 58.885 47.619 0.34 0.00 41.13 3.18
4313 4431 2.103094 TGACTGACTCTGTTGGGTCAAG 59.897 50.000 0.34 0.00 41.13 3.02
4314 4432 2.365617 GACTGACTCTGTTGGGTCAAGA 59.634 50.000 0.34 0.00 41.13 3.02
4358 4477 7.764695 TTTGCAGCAGATTCATTATGAAATG 57.235 32.000 11.88 13.78 40.12 2.32
4360 4479 5.595133 TGCAGCAGATTCATTATGAAATGGA 59.405 36.000 11.88 5.01 42.40 3.41
4363 4482 7.328737 GCAGCAGATTCATTATGAAATGGAATC 59.671 37.037 11.88 4.04 42.40 2.52
4374 4493 5.964958 TGAAATGGAATCAACTTGGACTC 57.035 39.130 0.00 0.00 0.00 3.36
4376 4495 5.707298 TGAAATGGAATCAACTTGGACTCTC 59.293 40.000 0.00 0.00 0.00 3.20
4423 4544 1.169661 TGGTTTGGTGCCGACATGAC 61.170 55.000 0.00 0.00 0.00 3.06
4514 4635 1.171308 CAGATTGCCAGTTGGGACAG 58.829 55.000 0.00 0.00 42.39 3.51
4517 4638 0.606401 ATTGCCAGTTGGGACAGTCG 60.606 55.000 0.00 0.00 42.39 4.18
4534 4656 5.365619 ACAGTCGTCCAACAGAATTAAGTT 58.634 37.500 0.00 0.00 0.00 2.66
4538 4669 7.384115 CAGTCGTCCAACAGAATTAAGTTTAGA 59.616 37.037 0.00 0.00 0.00 2.10
4569 4700 1.035139 CCATAGCCTGGGCATCAAAC 58.965 55.000 14.39 0.00 44.88 2.93
4600 4737 2.026822 GTCTCTCTCATGGGGCTTTGAA 60.027 50.000 0.00 0.00 0.00 2.69
4622 4759 1.927487 TTACTGGAGTGGCGGTAGAA 58.073 50.000 0.00 0.00 0.00 2.10
4631 4768 5.129815 TGGAGTGGCGGTAGAATAAATTAGT 59.870 40.000 0.00 0.00 0.00 2.24
4632 4769 5.695363 GGAGTGGCGGTAGAATAAATTAGTC 59.305 44.000 0.00 0.00 0.00 2.59
4633 4770 5.608449 AGTGGCGGTAGAATAAATTAGTCC 58.392 41.667 0.00 0.00 0.00 3.85
4634 4771 4.753610 GTGGCGGTAGAATAAATTAGTCCC 59.246 45.833 0.00 0.00 0.00 4.46
4635 4772 4.657039 TGGCGGTAGAATAAATTAGTCCCT 59.343 41.667 0.00 0.00 0.00 4.20
4636 4773 5.221581 TGGCGGTAGAATAAATTAGTCCCTC 60.222 44.000 0.00 0.00 0.00 4.30
4637 4774 5.236282 GCGGTAGAATAAATTAGTCCCTCC 58.764 45.833 0.00 0.00 0.00 4.30
4638 4775 5.467705 CGGTAGAATAAATTAGTCCCTCCG 58.532 45.833 11.50 11.50 0.00 4.63
4639 4776 5.010415 CGGTAGAATAAATTAGTCCCTCCGT 59.990 44.000 14.93 0.00 31.54 4.69
4640 4777 6.453943 GGTAGAATAAATTAGTCCCTCCGTC 58.546 44.000 0.00 0.00 0.00 4.79
4641 4778 5.548181 AGAATAAATTAGTCCCTCCGTCC 57.452 43.478 0.00 0.00 0.00 4.79
4642 4779 4.347292 AGAATAAATTAGTCCCTCCGTCCC 59.653 45.833 0.00 0.00 0.00 4.46
4643 4780 1.961133 AAATTAGTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
4644 4781 2.191981 AATTAGTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
4645 4782 3.339713 AATTAGTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
4646 4783 2.852714 TTAGTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
4647 4784 3.339713 TTAGTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
4648 4785 4.474303 TTAGTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
4649 4786 3.562108 AGTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4650 4787 4.687262 AGTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4651 4788 5.019657 AGTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4652 4789 5.024118 AGTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4653 4790 5.021458 GTCCCTCCGTCCCATAATATAAGA 58.979 45.833 0.00 0.00 0.00 2.10
4654 4791 5.127356 GTCCCTCCGTCCCATAATATAAGAG 59.873 48.000 0.00 0.00 0.00 2.85
4655 4792 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4656 4793 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4657 4794 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4658 4795 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4659 4796 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4660 4797 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4661 4798 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4662 4799 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
4663 4800 7.254658 CGTCCCATAATATAAGAGCGTTTTTGT 60.255 37.037 0.00 0.00 0.00 2.83
4664 4801 7.855904 GTCCCATAATATAAGAGCGTTTTTGTG 59.144 37.037 0.00 0.00 0.00 3.33
4665 4802 7.771361 TCCCATAATATAAGAGCGTTTTTGTGA 59.229 33.333 0.00 0.00 0.00 3.58
4666 4803 8.070171 CCCATAATATAAGAGCGTTTTTGTGAG 58.930 37.037 0.00 0.00 0.00 3.51
4667 4804 7.587757 CCATAATATAAGAGCGTTTTTGTGAGC 59.412 37.037 0.00 0.00 0.00 4.26
4668 4805 2.941891 TAAGAGCGTTTTTGTGAGCG 57.058 45.000 0.00 0.00 34.34 5.03
4669 4806 1.014352 AAGAGCGTTTTTGTGAGCGT 58.986 45.000 0.00 0.00 34.34 5.07
4670 4807 1.014352 AGAGCGTTTTTGTGAGCGTT 58.986 45.000 0.00 0.00 34.34 4.84
4671 4808 1.400494 AGAGCGTTTTTGTGAGCGTTT 59.600 42.857 0.00 0.00 34.34 3.60
4672 4809 2.159435 AGAGCGTTTTTGTGAGCGTTTT 60.159 40.909 0.00 0.00 34.34 2.43
4673 4810 3.064271 AGAGCGTTTTTGTGAGCGTTTTA 59.936 39.130 0.00 0.00 34.34 1.52
4674 4811 3.103007 AGCGTTTTTGTGAGCGTTTTAC 58.897 40.909 0.00 0.00 34.34 2.01
4675 4812 2.847133 GCGTTTTTGTGAGCGTTTTACA 59.153 40.909 0.00 0.00 0.00 2.41
4676 4813 3.300691 GCGTTTTTGTGAGCGTTTTACAC 60.301 43.478 0.00 0.00 35.45 2.90
4677 4814 3.846896 CGTTTTTGTGAGCGTTTTACACA 59.153 39.130 0.00 0.00 41.70 3.72
4697 4834 9.661563 TTACACAAAACACTCTTATACTATGGG 57.338 33.333 0.00 0.00 0.00 4.00
4698 4835 7.110155 ACACAAAACACTCTTATACTATGGGG 58.890 38.462 0.00 0.00 0.00 4.96
4699 4836 6.038271 CACAAAACACTCTTATACTATGGGGC 59.962 42.308 0.00 0.00 0.00 5.80
4700 4837 4.602340 AACACTCTTATACTATGGGGCG 57.398 45.455 0.00 0.00 0.00 6.13
4701 4838 2.897969 ACACTCTTATACTATGGGGCGG 59.102 50.000 0.00 0.00 0.00 6.13
4702 4839 3.162666 CACTCTTATACTATGGGGCGGA 58.837 50.000 0.00 0.00 0.00 5.54
4703 4840 3.193691 CACTCTTATACTATGGGGCGGAG 59.806 52.174 0.00 0.00 0.00 4.63
4704 4841 2.761208 CTCTTATACTATGGGGCGGAGG 59.239 54.545 0.00 0.00 0.00 4.30
4705 4842 1.831736 CTTATACTATGGGGCGGAGGG 59.168 57.143 0.00 0.00 0.00 4.30
4706 4843 1.086565 TATACTATGGGGCGGAGGGA 58.913 55.000 0.00 0.00 0.00 4.20
4707 4844 0.252284 ATACTATGGGGCGGAGGGAG 60.252 60.000 0.00 0.00 0.00 4.30
4708 4845 1.661990 TACTATGGGGCGGAGGGAGT 61.662 60.000 0.00 0.00 0.00 3.85
4709 4846 1.155390 CTATGGGGCGGAGGGAGTA 59.845 63.158 0.00 0.00 0.00 2.59
4710 4847 0.900647 CTATGGGGCGGAGGGAGTAG 60.901 65.000 0.00 0.00 0.00 2.57
4712 4849 4.862823 GGGGCGGAGGGAGTAGCT 62.863 72.222 0.00 0.00 0.00 3.32
4713 4850 3.541713 GGGCGGAGGGAGTAGCTG 61.542 72.222 0.00 0.00 0.00 4.24
4714 4851 3.541713 GGCGGAGGGAGTAGCTGG 61.542 72.222 0.00 0.00 0.00 4.85
4715 4852 4.228567 GCGGAGGGAGTAGCTGGC 62.229 72.222 0.00 0.00 0.00 4.85
4716 4853 2.759973 CGGAGGGAGTAGCTGGCA 60.760 66.667 0.00 0.00 0.00 4.92
4717 4854 2.359169 CGGAGGGAGTAGCTGGCAA 61.359 63.158 0.00 0.00 0.00 4.52
4718 4855 1.524482 GGAGGGAGTAGCTGGCAAG 59.476 63.158 0.00 0.00 0.00 4.01
4731 4868 3.900446 GGCAAGCAGCTTGTCATTT 57.100 47.368 30.87 0.00 44.43 2.32
4732 4869 1.706443 GGCAAGCAGCTTGTCATTTC 58.294 50.000 30.87 15.62 44.43 2.17
4733 4870 1.000060 GGCAAGCAGCTTGTCATTTCA 60.000 47.619 30.87 0.00 44.43 2.69
4734 4871 2.056577 GCAAGCAGCTTGTCATTTCAC 58.943 47.619 31.26 12.22 42.77 3.18
4735 4872 2.544277 GCAAGCAGCTTGTCATTTCACA 60.544 45.455 31.26 0.00 42.77 3.58
4736 4873 3.305964 CAAGCAGCTTGTCATTTCACAG 58.694 45.455 24.89 0.00 36.79 3.66
4737 4874 2.854963 AGCAGCTTGTCATTTCACAGA 58.145 42.857 0.00 0.00 0.00 3.41
4738 4875 3.418995 AGCAGCTTGTCATTTCACAGAT 58.581 40.909 0.00 0.00 0.00 2.90
4739 4876 4.582869 AGCAGCTTGTCATTTCACAGATA 58.417 39.130 0.00 0.00 0.00 1.98
4740 4877 5.005740 AGCAGCTTGTCATTTCACAGATAA 58.994 37.500 0.00 0.00 0.00 1.75
4741 4878 5.474532 AGCAGCTTGTCATTTCACAGATAAA 59.525 36.000 0.00 0.00 0.00 1.40
4742 4879 6.016024 AGCAGCTTGTCATTTCACAGATAAAA 60.016 34.615 0.00 0.00 0.00 1.52
4743 4880 6.642131 GCAGCTTGTCATTTCACAGATAAAAA 59.358 34.615 0.00 0.00 0.00 1.94
4744 4881 7.358683 GCAGCTTGTCATTTCACAGATAAAAAC 60.359 37.037 0.00 0.00 0.00 2.43
4745 4882 7.648908 CAGCTTGTCATTTCACAGATAAAAACA 59.351 33.333 0.00 0.00 0.00 2.83
4746 4883 8.196771 AGCTTGTCATTTCACAGATAAAAACAA 58.803 29.630 0.00 0.00 30.96 2.83
4747 4884 8.268738 GCTTGTCATTTCACAGATAAAAACAAC 58.731 33.333 0.00 0.00 29.75 3.32
4748 4885 7.906611 TGTCATTTCACAGATAAAAACAACG 57.093 32.000 0.00 0.00 0.00 4.10
4749 4886 6.416455 TGTCATTTCACAGATAAAAACAACGC 59.584 34.615 0.00 0.00 0.00 4.84
4750 4887 6.416455 GTCATTTCACAGATAAAAACAACGCA 59.584 34.615 0.00 0.00 0.00 5.24
4751 4888 6.975197 TCATTTCACAGATAAAAACAACGCAA 59.025 30.769 0.00 0.00 0.00 4.85
4752 4889 7.651304 TCATTTCACAGATAAAAACAACGCAAT 59.349 29.630 0.00 0.00 0.00 3.56
4753 4890 6.984740 TTCACAGATAAAAACAACGCAATC 57.015 33.333 0.00 0.00 0.00 2.67
4754 4891 5.143660 TCACAGATAAAAACAACGCAATCG 58.856 37.500 0.00 0.00 42.43 3.34
4755 4892 5.050023 TCACAGATAAAAACAACGCAATCGA 60.050 36.000 0.00 0.00 39.41 3.59
4756 4893 5.281376 CACAGATAAAAACAACGCAATCGAG 59.719 40.000 0.00 0.00 39.41 4.04
4757 4894 4.260656 CAGATAAAAACAACGCAATCGAGC 59.739 41.667 0.00 0.00 39.41 5.03
4758 4895 2.483583 AAAAACAACGCAATCGAGCA 57.516 40.000 0.00 0.00 39.41 4.26
4759 4896 2.483583 AAAACAACGCAATCGAGCAA 57.516 40.000 0.00 0.00 39.41 3.91
4760 4897 2.036556 AAACAACGCAATCGAGCAAG 57.963 45.000 0.00 0.00 39.41 4.01
4761 4898 0.944386 AACAACGCAATCGAGCAAGT 59.056 45.000 0.00 0.00 39.41 3.16
4762 4899 0.944386 ACAACGCAATCGAGCAAGTT 59.056 45.000 0.00 0.00 39.41 2.66
4763 4900 1.069906 ACAACGCAATCGAGCAAGTTC 60.070 47.619 0.00 0.00 39.41 3.01
4764 4901 1.195448 CAACGCAATCGAGCAAGTTCT 59.805 47.619 0.00 0.00 39.41 3.01
4765 4902 0.792640 ACGCAATCGAGCAAGTTCTG 59.207 50.000 0.00 0.00 39.41 3.02
4766 4903 3.115190 ACGCAATCGAGCAAGTTCTGC 62.115 52.381 0.00 0.00 44.74 4.26
4780 4917 6.939551 CAAGTTCTGCATAAATTTCACAGG 57.060 37.500 12.48 0.00 0.00 4.00
4781 4918 6.449698 CAAGTTCTGCATAAATTTCACAGGT 58.550 36.000 12.48 0.36 0.00 4.00
4782 4919 6.655078 AGTTCTGCATAAATTTCACAGGTT 57.345 33.333 12.48 0.94 0.00 3.50
4783 4920 6.449698 AGTTCTGCATAAATTTCACAGGTTG 58.550 36.000 12.48 0.00 0.00 3.77
4784 4921 6.265196 AGTTCTGCATAAATTTCACAGGTTGA 59.735 34.615 12.48 0.00 0.00 3.18
4785 4922 6.647334 TCTGCATAAATTTCACAGGTTGAA 57.353 33.333 12.48 0.00 42.83 2.69
4797 4934 6.522625 TCACAGGTTGAAAATTGAGAAACA 57.477 33.333 0.00 0.00 0.00 2.83
4798 4935 6.929625 TCACAGGTTGAAAATTGAGAAACAA 58.070 32.000 0.00 0.00 42.95 2.83
4799 4936 7.382110 TCACAGGTTGAAAATTGAGAAACAAA 58.618 30.769 0.00 0.00 42.03 2.83
4800 4937 7.875041 TCACAGGTTGAAAATTGAGAAACAAAA 59.125 29.630 0.00 0.00 42.03 2.44
4801 4938 7.956943 CACAGGTTGAAAATTGAGAAACAAAAC 59.043 33.333 0.00 0.00 42.03 2.43
4802 4939 7.877612 ACAGGTTGAAAATTGAGAAACAAAACT 59.122 29.630 0.00 0.00 42.03 2.66
4803 4940 8.720562 CAGGTTGAAAATTGAGAAACAAAACTT 58.279 29.630 0.00 0.00 42.03 2.66
4804 4941 8.720562 AGGTTGAAAATTGAGAAACAAAACTTG 58.279 29.630 0.00 0.00 42.03 3.16
4805 4942 7.962373 GGTTGAAAATTGAGAAACAAAACTTGG 59.038 33.333 0.00 0.00 42.03 3.61
4806 4943 7.608308 TGAAAATTGAGAAACAAAACTTGGG 57.392 32.000 0.00 0.00 42.03 4.12
4807 4944 7.164803 TGAAAATTGAGAAACAAAACTTGGGT 58.835 30.769 0.00 0.00 42.03 4.51
4808 4945 6.983474 AAATTGAGAAACAAAACTTGGGTG 57.017 33.333 0.00 0.00 42.03 4.61
4809 4946 3.518634 TGAGAAACAAAACTTGGGTGC 57.481 42.857 0.00 0.00 34.12 5.01
4810 4947 2.167487 TGAGAAACAAAACTTGGGTGCC 59.833 45.455 0.00 0.00 34.12 5.01
4811 4948 2.167487 GAGAAACAAAACTTGGGTGCCA 59.833 45.455 0.00 0.00 34.12 4.92
4812 4949 2.771372 AGAAACAAAACTTGGGTGCCAT 59.229 40.909 0.00 0.00 31.53 4.40
4813 4950 2.908688 AACAAAACTTGGGTGCCATC 57.091 45.000 0.00 0.00 31.53 3.51
4814 4951 1.047801 ACAAAACTTGGGTGCCATCC 58.952 50.000 0.00 0.00 31.53 3.51
4815 4952 0.038343 CAAAACTTGGGTGCCATCCG 60.038 55.000 0.00 0.00 31.53 4.18
4816 4953 0.178975 AAAACTTGGGTGCCATCCGA 60.179 50.000 0.00 0.00 31.53 4.55
4817 4954 0.893727 AAACTTGGGTGCCATCCGAC 60.894 55.000 0.00 0.00 31.53 4.79
4818 4955 1.779061 AACTTGGGTGCCATCCGACT 61.779 55.000 0.00 0.00 31.53 4.18
4819 4956 1.002134 CTTGGGTGCCATCCGACTT 60.002 57.895 0.00 0.00 31.53 3.01
4820 4957 1.002624 TTGGGTGCCATCCGACTTC 60.003 57.895 0.00 0.00 31.53 3.01
4821 4958 2.511600 GGGTGCCATCCGACTTCG 60.512 66.667 0.00 0.00 39.44 3.79
4822 4959 3.195698 GGTGCCATCCGACTTCGC 61.196 66.667 0.00 0.00 38.18 4.70
4823 4960 3.195698 GTGCCATCCGACTTCGCC 61.196 66.667 0.00 0.00 38.18 5.54
4824 4961 4.467084 TGCCATCCGACTTCGCCC 62.467 66.667 0.00 0.00 38.18 6.13
4826 4963 3.833645 CCATCCGACTTCGCCCGA 61.834 66.667 0.00 0.00 38.18 5.14
4827 4964 2.183300 CATCCGACTTCGCCCGAA 59.817 61.111 2.92 2.92 38.18 4.30
4828 4965 1.447140 CATCCGACTTCGCCCGAAA 60.447 57.895 4.58 0.00 38.18 3.46
4829 4966 0.810031 CATCCGACTTCGCCCGAAAT 60.810 55.000 4.58 0.00 38.18 2.17
4830 4967 0.107848 ATCCGACTTCGCCCGAAATT 60.108 50.000 4.58 0.00 38.18 1.82
4831 4968 0.738412 TCCGACTTCGCCCGAAATTC 60.738 55.000 4.58 3.67 38.18 2.17
4832 4969 1.343821 CGACTTCGCCCGAAATTCG 59.656 57.895 8.62 8.62 40.07 3.34
4833 4970 1.074319 CGACTTCGCCCGAAATTCGA 61.074 55.000 17.75 0.00 43.74 3.71
4834 4971 0.369248 GACTTCGCCCGAAATTCGAC 59.631 55.000 17.75 7.58 43.74 4.20
4835 4972 1.343821 CTTCGCCCGAAATTCGACG 59.656 57.895 17.75 18.73 43.74 5.12
4836 4973 1.074319 CTTCGCCCGAAATTCGACGA 61.074 55.000 22.43 22.43 43.74 4.20
4837 4974 0.458889 TTCGCCCGAAATTCGACGAT 60.459 50.000 25.15 0.00 43.59 3.73
4838 4975 0.868602 TCGCCCGAAATTCGACGATC 60.869 55.000 22.43 6.02 43.74 3.69
4839 4976 1.558383 GCCCGAAATTCGACGATCG 59.442 57.895 17.75 14.88 43.74 3.69
4859 4996 4.133856 CGAAATCTTCGCAAGTTGTTCT 57.866 40.909 4.48 0.00 46.97 3.01
4860 4997 4.144555 CGAAATCTTCGCAAGTTGTTCTC 58.855 43.478 4.48 0.00 46.97 2.87
4861 4998 4.467735 GAAATCTTCGCAAGTTGTTCTCC 58.532 43.478 4.48 0.00 39.48 3.71
4862 4999 1.878953 TCTTCGCAAGTTGTTCTCCC 58.121 50.000 4.48 0.00 39.48 4.30
4863 5000 1.416401 TCTTCGCAAGTTGTTCTCCCT 59.584 47.619 4.48 0.00 39.48 4.20
4864 5001 2.158813 TCTTCGCAAGTTGTTCTCCCTT 60.159 45.455 4.48 0.00 39.48 3.95
4865 5002 2.341846 TCGCAAGTTGTTCTCCCTTT 57.658 45.000 4.48 0.00 39.48 3.11
4866 5003 1.946768 TCGCAAGTTGTTCTCCCTTTG 59.053 47.619 4.48 0.00 39.48 2.77
4867 5004 1.946768 CGCAAGTTGTTCTCCCTTTGA 59.053 47.619 4.48 0.00 0.00 2.69
4868 5005 2.031682 CGCAAGTTGTTCTCCCTTTGAG 60.032 50.000 4.48 0.00 42.90 3.02
4869 5006 2.294512 GCAAGTTGTTCTCCCTTTGAGG 59.705 50.000 4.48 0.00 41.76 3.86
4870 5007 2.278332 AGTTGTTCTCCCTTTGAGGC 57.722 50.000 0.00 0.00 41.76 4.70
4871 5008 1.202940 AGTTGTTCTCCCTTTGAGGCC 60.203 52.381 0.00 0.00 41.76 5.19
4872 5009 1.149101 TTGTTCTCCCTTTGAGGCCT 58.851 50.000 3.86 3.86 41.76 5.19
4873 5010 0.693049 TGTTCTCCCTTTGAGGCCTC 59.307 55.000 26.78 26.78 41.76 4.70
4874 5011 0.034960 GTTCTCCCTTTGAGGCCTCC 60.035 60.000 29.95 12.55 41.76 4.30
4875 5012 0.178861 TTCTCCCTTTGAGGCCTCCT 60.179 55.000 29.95 0.00 41.76 3.69
4876 5013 0.178861 TCTCCCTTTGAGGCCTCCTT 60.179 55.000 29.95 0.00 41.76 3.36
4877 5014 0.701147 CTCCCTTTGAGGCCTCCTTT 59.299 55.000 29.95 0.00 37.45 3.11
4878 5015 0.405585 TCCCTTTGAGGCCTCCTTTG 59.594 55.000 29.95 16.25 31.76 2.77
4879 5016 0.613012 CCCTTTGAGGCCTCCTTTGG 60.613 60.000 29.95 23.25 31.76 3.28
4880 5017 0.113190 CCTTTGAGGCCTCCTTTGGT 59.887 55.000 29.95 0.00 31.76 3.67
4881 5018 1.481242 CCTTTGAGGCCTCCTTTGGTT 60.481 52.381 29.95 0.00 31.76 3.67
4882 5019 2.319844 CTTTGAGGCCTCCTTTGGTTT 58.680 47.619 29.95 0.00 31.76 3.27
4883 5020 1.703411 TTGAGGCCTCCTTTGGTTTG 58.297 50.000 29.95 0.00 31.76 2.93
4884 5021 0.555769 TGAGGCCTCCTTTGGTTTGT 59.444 50.000 29.95 0.00 31.76 2.83
4885 5022 1.777878 TGAGGCCTCCTTTGGTTTGTA 59.222 47.619 29.95 3.38 31.76 2.41
4886 5023 2.224769 TGAGGCCTCCTTTGGTTTGTAG 60.225 50.000 29.95 0.00 31.76 2.74
4887 5024 1.075536 AGGCCTCCTTTGGTTTGTAGG 59.924 52.381 0.00 0.00 0.00 3.18
4888 5025 1.074889 GGCCTCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 36.65 2.94
4889 5026 2.291605 GGCCTCCTTTGGTTTGTAGGAT 60.292 50.000 0.00 0.00 37.44 3.24
4890 5027 3.431415 GCCTCCTTTGGTTTGTAGGATT 58.569 45.455 0.00 0.00 37.44 3.01
4891 5028 3.832490 GCCTCCTTTGGTTTGTAGGATTT 59.168 43.478 0.00 0.00 37.44 2.17
4892 5029 4.283467 GCCTCCTTTGGTTTGTAGGATTTT 59.717 41.667 0.00 0.00 37.44 1.82
4893 5030 5.221641 GCCTCCTTTGGTTTGTAGGATTTTT 60.222 40.000 0.00 0.00 37.44 1.94
4894 5031 6.223120 CCTCCTTTGGTTTGTAGGATTTTTG 58.777 40.000 0.00 0.00 37.44 2.44
4895 5032 6.183360 CCTCCTTTGGTTTGTAGGATTTTTGT 60.183 38.462 0.00 0.00 37.44 2.83
4896 5033 7.014808 CCTCCTTTGGTTTGTAGGATTTTTGTA 59.985 37.037 0.00 0.00 37.44 2.41
4897 5034 7.947282 TCCTTTGGTTTGTAGGATTTTTGTAG 58.053 34.615 0.00 0.00 33.23 2.74
4898 5035 7.014808 TCCTTTGGTTTGTAGGATTTTTGTAGG 59.985 37.037 0.00 0.00 33.23 3.18
4899 5036 7.014808 CCTTTGGTTTGTAGGATTTTTGTAGGA 59.985 37.037 0.00 0.00 0.00 2.94
4900 5037 7.899648 TTGGTTTGTAGGATTTTTGTAGGAA 57.100 32.000 0.00 0.00 0.00 3.36
4901 5038 8.485578 TTGGTTTGTAGGATTTTTGTAGGAAT 57.514 30.769 0.00 0.00 0.00 3.01
4902 5039 8.485578 TGGTTTGTAGGATTTTTGTAGGAATT 57.514 30.769 0.00 0.00 0.00 2.17
4903 5040 8.581578 TGGTTTGTAGGATTTTTGTAGGAATTC 58.418 33.333 0.00 0.00 0.00 2.17
4904 5041 8.803235 GGTTTGTAGGATTTTTGTAGGAATTCT 58.197 33.333 5.23 0.00 0.00 2.40
4920 5057 9.825109 GTAGGAATTCTATAGGATAGGATTTGC 57.175 37.037 5.23 0.00 0.00 3.68
4921 5058 8.454859 AGGAATTCTATAGGATAGGATTTGCA 57.545 34.615 5.23 0.00 0.00 4.08
4922 5059 8.894592 AGGAATTCTATAGGATAGGATTTGCAA 58.105 33.333 5.23 0.00 0.00 4.08
4923 5060 9.520515 GGAATTCTATAGGATAGGATTTGCAAA 57.479 33.333 15.44 15.44 0.00 3.68
4949 5086 5.628797 AAAATTCCTTTGAAGCCCTTTGA 57.371 34.783 0.00 0.00 33.05 2.69
4950 5087 5.830799 AAATTCCTTTGAAGCCCTTTGAT 57.169 34.783 0.00 0.00 33.05 2.57
4951 5088 5.830799 AATTCCTTTGAAGCCCTTTGATT 57.169 34.783 0.00 0.00 33.05 2.57
4952 5089 5.830799 ATTCCTTTGAAGCCCTTTGATTT 57.169 34.783 0.00 0.00 33.05 2.17
4953 5090 4.605640 TCCTTTGAAGCCCTTTGATTTG 57.394 40.909 0.00 0.00 0.00 2.32
4954 5091 3.966665 TCCTTTGAAGCCCTTTGATTTGT 59.033 39.130 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.534496 GCAGAAAAGGATGGCCATATAATTTAT 58.466 33.333 20.84 11.99 36.29 1.40
26 27 2.824689 TGCAGAAAAGGATGGCCATA 57.175 45.000 20.84 0.00 36.29 2.74
91 92 4.370917 CATGGGTGAAAACTGAAAACTGG 58.629 43.478 0.00 0.00 0.00 4.00
120 121 2.716017 CCTCACCTCACCTCGCCTC 61.716 68.421 0.00 0.00 0.00 4.70
121 122 2.681778 CCTCACCTCACCTCGCCT 60.682 66.667 0.00 0.00 0.00 5.52
122 123 2.997897 ACCTCACCTCACCTCGCC 60.998 66.667 0.00 0.00 0.00 5.54
123 124 2.262915 CACCTCACCTCACCTCGC 59.737 66.667 0.00 0.00 0.00 5.03
124 125 2.650116 CCCACCTCACCTCACCTCG 61.650 68.421 0.00 0.00 0.00 4.63
134 135 1.081092 CTTCCTCCCTCCCACCTCA 59.919 63.158 0.00 0.00 0.00 3.86
145 146 1.657804 TCACTTCCCCTTCTTCCTCC 58.342 55.000 0.00 0.00 0.00 4.30
170 172 3.063084 GACCCCGCTCGACTCAGT 61.063 66.667 0.00 0.00 0.00 3.41
171 173 4.180946 CGACCCCGCTCGACTCAG 62.181 72.222 0.00 0.00 35.58 3.35
172 174 4.710167 TCGACCCCGCTCGACTCA 62.710 66.667 0.00 0.00 37.76 3.41
173 175 3.878519 CTCGACCCCGCTCGACTC 61.879 72.222 0.00 0.00 37.76 3.36
183 185 1.327690 TATGTGTGCTCCCTCGACCC 61.328 60.000 0.00 0.00 0.00 4.46
227 255 0.814457 TTGTCACTGGTTTGTGGTGC 59.186 50.000 0.00 0.00 38.40 5.01
247 275 2.224646 GGGCTCCTACCAATCCTGATTC 60.225 54.545 0.00 0.00 0.00 2.52
333 373 4.426313 GGCAGGAAACCGAGGGGG 62.426 72.222 0.00 0.00 43.62 5.40
423 463 3.161067 TCTCCTCCTCTCTTGTGAGTTG 58.839 50.000 0.00 0.00 40.98 3.16
426 466 3.016736 GTCTCTCCTCCTCTCTTGTGAG 58.983 54.545 0.00 0.00 41.51 3.51
427 467 2.291282 GGTCTCTCCTCCTCTCTTGTGA 60.291 54.545 0.00 0.00 0.00 3.58
428 468 2.099405 GGTCTCTCCTCCTCTCTTGTG 58.901 57.143 0.00 0.00 0.00 3.33
431 473 2.000048 AGTGGTCTCTCCTCCTCTCTT 59.000 52.381 0.00 0.00 37.07 2.85
438 480 0.324275 AGGCAGAGTGGTCTCTCCTC 60.324 60.000 9.01 0.00 46.84 3.71
439 481 0.324275 GAGGCAGAGTGGTCTCTCCT 60.324 60.000 12.44 12.44 46.84 3.69
450 492 0.108233 GGAACAGCTCAGAGGCAGAG 60.108 60.000 0.00 0.00 36.21 3.35
451 493 0.543883 AGGAACAGCTCAGAGGCAGA 60.544 55.000 0.00 0.00 34.17 4.26
488 530 1.740025 GCTTTTCTCCCGGTGATTGAG 59.260 52.381 0.00 0.00 0.00 3.02
491 533 2.286365 TTGCTTTTCTCCCGGTGATT 57.714 45.000 0.00 0.00 0.00 2.57
493 535 1.604604 CTTTGCTTTTCTCCCGGTGA 58.395 50.000 0.00 0.00 0.00 4.02
494 536 0.039165 GCTTTGCTTTTCTCCCGGTG 60.039 55.000 0.00 0.00 0.00 4.94
495 537 0.467290 TGCTTTGCTTTTCTCCCGGT 60.467 50.000 0.00 0.00 0.00 5.28
496 538 0.242017 CTGCTTTGCTTTTCTCCCGG 59.758 55.000 0.00 0.00 0.00 5.73
497 539 0.387750 GCTGCTTTGCTTTTCTCCCG 60.388 55.000 0.00 0.00 0.00 5.14
498 540 0.675633 TGCTGCTTTGCTTTTCTCCC 59.324 50.000 0.00 0.00 0.00 4.30
501 543 0.033090 GCCTGCTGCTTTGCTTTTCT 59.967 50.000 0.00 0.00 36.87 2.52
502 544 0.947660 GGCCTGCTGCTTTGCTTTTC 60.948 55.000 0.00 0.00 40.92 2.29
504 546 1.835712 AGGCCTGCTGCTTTGCTTT 60.836 52.632 3.11 0.00 40.92 3.51
506 548 2.989824 CAGGCCTGCTGCTTTGCT 60.990 61.111 22.33 0.00 40.92 3.91
532 574 2.514516 AAAAATCCCCTCCCCGGCAG 62.515 60.000 0.00 0.00 0.00 4.85
533 575 2.553330 AAAAATCCCCTCCCCGGCA 61.553 57.895 0.00 0.00 0.00 5.69
534 576 2.362963 AAAAATCCCCTCCCCGGC 59.637 61.111 0.00 0.00 0.00 6.13
549 602 4.170468 AGGAGCTTGACAGAAAGGAAAA 57.830 40.909 0.00 0.00 0.00 2.29
553 606 1.538950 GCAAGGAGCTTGACAGAAAGG 59.461 52.381 0.00 0.00 43.42 3.11
581 634 6.798315 TCAAAGAGAAGAGAATCAAGCAAG 57.202 37.500 0.00 0.00 37.82 4.01
582 635 6.373774 GGATCAAAGAGAAGAGAATCAAGCAA 59.626 38.462 0.00 0.00 37.82 3.91
585 642 6.539464 CCAGGATCAAAGAGAAGAGAATCAAG 59.461 42.308 0.00 0.00 37.82 3.02
590 647 4.081198 GCTCCAGGATCAAAGAGAAGAGAA 60.081 45.833 8.77 0.00 0.00 2.87
591 648 3.450457 GCTCCAGGATCAAAGAGAAGAGA 59.550 47.826 8.77 0.00 0.00 3.10
592 649 3.737663 CGCTCCAGGATCAAAGAGAAGAG 60.738 52.174 8.77 0.00 0.00 2.85
593 650 2.167281 CGCTCCAGGATCAAAGAGAAGA 59.833 50.000 8.77 0.00 0.00 2.87
594 651 2.548875 CGCTCCAGGATCAAAGAGAAG 58.451 52.381 8.77 0.13 0.00 2.85
718 781 3.702048 CAAGAACTCCCCGCCGGA 61.702 66.667 5.05 0.00 38.83 5.14
737 800 2.726351 CCCCTCTCTCCGTCCAAGC 61.726 68.421 0.00 0.00 0.00 4.01
756 822 1.000771 GAGGCCCCTCACCTTTTCC 60.001 63.158 9.42 0.00 42.31 3.13
757 823 1.377333 CGAGGCCCCTCACCTTTTC 60.377 63.158 14.28 0.00 42.86 2.29
846 912 6.770746 AGGATCAATCAATCAACCAAGAAG 57.229 37.500 0.00 0.00 0.00 2.85
917 991 5.619981 GCAACCAAACAGAATCATCAGTACC 60.620 44.000 0.00 0.00 0.00 3.34
1332 1418 0.400381 GGGATTTTGGGATGGGGCAT 60.400 55.000 0.00 0.00 0.00 4.40
1333 1419 1.002792 GGGATTTTGGGATGGGGCA 59.997 57.895 0.00 0.00 0.00 5.36
1334 1420 1.766059 GGGGATTTTGGGATGGGGC 60.766 63.158 0.00 0.00 0.00 5.80
1336 1422 1.221265 AGATGGGGATTTTGGGATGGG 59.779 52.381 0.00 0.00 0.00 4.00
1337 1423 2.322658 CAGATGGGGATTTTGGGATGG 58.677 52.381 0.00 0.00 0.00 3.51
1338 1424 1.690352 GCAGATGGGGATTTTGGGATG 59.310 52.381 0.00 0.00 0.00 3.51
1340 1426 1.009997 AGCAGATGGGGATTTTGGGA 58.990 50.000 0.00 0.00 0.00 4.37
1341 1427 2.754012 TAGCAGATGGGGATTTTGGG 57.246 50.000 0.00 0.00 0.00 4.12
1342 1428 4.477249 AGATTAGCAGATGGGGATTTTGG 58.523 43.478 0.00 0.00 0.00 3.28
1343 1429 5.383476 AGAGATTAGCAGATGGGGATTTTG 58.617 41.667 0.00 0.00 0.00 2.44
1363 1449 3.611766 GCGCCTCCCAAACTTAAAAAGAG 60.612 47.826 0.00 0.00 0.00 2.85
1384 1470 1.026182 TTCATCATCAGTGGCGTGGC 61.026 55.000 0.00 0.00 0.00 5.01
1385 1471 1.452110 TTTCATCATCAGTGGCGTGG 58.548 50.000 0.00 0.00 0.00 4.94
1386 1472 2.679336 TGATTTCATCATCAGTGGCGTG 59.321 45.455 0.00 0.00 33.59 5.34
1412 1498 5.128171 AGCATGAAACATCATAAGTTGGCAT 59.872 36.000 0.00 0.00 0.00 4.40
1446 1532 4.541085 TTATCACAATCATGCTCGCAAG 57.459 40.909 0.00 0.00 0.00 4.01
1508 1595 2.703416 TGAGTGCCAAAGCTATGACAG 58.297 47.619 0.00 0.00 40.80 3.51
1509 1596 2.857186 TGAGTGCCAAAGCTATGACA 57.143 45.000 0.00 0.00 40.80 3.58
1510 1597 4.025015 CAATGAGTGCCAAAGCTATGAC 57.975 45.455 0.00 0.00 40.80 3.06
1523 1610 5.806366 TGATGATGTTACAGCAATGAGTG 57.194 39.130 7.55 0.00 32.21 3.51
1543 1630 9.234827 TGCAATATTTTCTTCTTCTTCTGATGA 57.765 29.630 0.00 0.00 0.00 2.92
1544 1631 9.504710 CTGCAATATTTTCTTCTTCTTCTGATG 57.495 33.333 0.00 0.00 0.00 3.07
1546 1633 7.667219 ACCTGCAATATTTTCTTCTTCTTCTGA 59.333 33.333 0.00 0.00 0.00 3.27
1547 1634 7.824672 ACCTGCAATATTTTCTTCTTCTTCTG 58.175 34.615 0.00 0.00 0.00 3.02
1548 1635 8.414629 AACCTGCAATATTTTCTTCTTCTTCT 57.585 30.769 0.00 0.00 0.00 2.85
1551 1638 7.765695 TGAACCTGCAATATTTTCTTCTTCT 57.234 32.000 0.00 0.00 0.00 2.85
1552 1639 8.992835 ATTGAACCTGCAATATTTTCTTCTTC 57.007 30.769 0.00 0.00 36.76 2.87
1576 1663 6.881065 TGATGCAAGCTTAGAAACAAGTCTAT 59.119 34.615 0.00 0.00 30.25 1.98
1584 1671 4.488126 TGTGTGATGCAAGCTTAGAAAC 57.512 40.909 0.00 0.00 0.00 2.78
1664 1751 5.186797 ACAGAAGACATAAGCAGCTAGAAGT 59.813 40.000 0.00 0.00 0.00 3.01
1711 1801 9.841295 AACAGAAAACAATTAAGTAGTGGAGTA 57.159 29.630 0.00 0.00 0.00 2.59
1712 1802 8.747538 AACAGAAAACAATTAAGTAGTGGAGT 57.252 30.769 0.00 0.00 0.00 3.85
1714 1804 9.403583 AGAAACAGAAAACAATTAAGTAGTGGA 57.596 29.630 0.00 0.00 0.00 4.02
1715 1805 9.450807 CAGAAACAGAAAACAATTAAGTAGTGG 57.549 33.333 0.00 0.00 0.00 4.00
1716 1806 9.450807 CCAGAAACAGAAAACAATTAAGTAGTG 57.549 33.333 0.00 0.00 0.00 2.74
1717 1807 8.630037 CCCAGAAACAGAAAACAATTAAGTAGT 58.370 33.333 0.00 0.00 0.00 2.73
1718 1808 8.082242 CCCCAGAAACAGAAAACAATTAAGTAG 58.918 37.037 0.00 0.00 0.00 2.57
1888 1978 2.093973 AGACCATTCCTTGCTGACTACG 60.094 50.000 0.00 0.00 0.00 3.51
1957 2047 2.682155 AGAGAGTTCCGGAGCAAATC 57.318 50.000 21.22 14.08 0.00 2.17
1969 2059 1.993370 GCGTTTGCGATGTAGAGAGTT 59.007 47.619 0.00 0.00 41.33 3.01
2080 2170 0.905357 GCTCCTGCCTAACTTCCTCA 59.095 55.000 0.00 0.00 0.00 3.86
2131 2221 1.395608 ACGTTGTGTTTCAGAACCACG 59.604 47.619 6.37 1.76 34.73 4.94
2275 2365 4.036852 GTGATGAGACGGACAGATGATGTA 59.963 45.833 0.00 0.00 44.17 2.29
2525 2615 6.725834 TCAATCTAGCATAGTCATATGGGACA 59.274 38.462 2.13 0.00 41.51 4.02
2526 2616 7.175347 TCAATCTAGCATAGTCATATGGGAC 57.825 40.000 2.13 0.00 40.38 4.46
2572 2662 1.670406 CTCTTGCTGGCACGCTTCT 60.670 57.895 9.68 0.00 0.00 2.85
2606 2696 3.181329 ACCATGGGTGACTGTAGAATGA 58.819 45.455 18.09 0.00 32.98 2.57
2677 2767 3.745799 TGACTAAAATCCCGACTTGCAA 58.254 40.909 0.00 0.00 0.00 4.08
2683 2773 7.730364 AATATGTCATGACTAAAATCCCGAC 57.270 36.000 25.55 0.00 0.00 4.79
2725 2815 4.939052 TTTACAGGAGCCTATAGACTGC 57.061 45.455 0.00 0.00 32.60 4.40
3090 3181 0.171455 CGGAGAGTGGGAGAAGAACG 59.829 60.000 0.00 0.00 0.00 3.95
3101 3192 5.242615 TGAAATCCATAGAGATCGGAGAGTG 59.757 44.000 0.00 0.00 43.63 3.51
3185 3276 9.846248 GCTGGTCATATATTTAATGAATTGGAC 57.154 33.333 0.00 0.00 35.23 4.02
3287 3378 9.991906 ACACTTGCTTGAACTTATAGTAGTTTA 57.008 29.630 0.00 0.00 38.43 2.01
3288 3379 8.904099 ACACTTGCTTGAACTTATAGTAGTTT 57.096 30.769 0.00 0.00 38.43 2.66
3289 3380 9.640963 CTACACTTGCTTGAACTTATAGTAGTT 57.359 33.333 0.00 0.00 40.92 2.24
3290 3381 7.760340 GCTACACTTGCTTGAACTTATAGTAGT 59.240 37.037 0.00 0.00 0.00 2.73
3291 3382 7.222999 GGCTACACTTGCTTGAACTTATAGTAG 59.777 40.741 0.00 0.00 0.00 2.57
3292 3383 7.039882 GGCTACACTTGCTTGAACTTATAGTA 58.960 38.462 0.00 0.00 0.00 1.82
3293 3384 5.875359 GGCTACACTTGCTTGAACTTATAGT 59.125 40.000 0.00 0.00 0.00 2.12
3294 3385 6.109359 AGGCTACACTTGCTTGAACTTATAG 58.891 40.000 0.00 0.00 0.00 1.31
3295 3386 6.049955 AGGCTACACTTGCTTGAACTTATA 57.950 37.500 0.00 0.00 0.00 0.98
3296 3387 4.911390 AGGCTACACTTGCTTGAACTTAT 58.089 39.130 0.00 0.00 0.00 1.73
3297 3388 4.351874 AGGCTACACTTGCTTGAACTTA 57.648 40.909 0.00 0.00 0.00 2.24
3298 3389 3.214696 AGGCTACACTTGCTTGAACTT 57.785 42.857 0.00 0.00 0.00 2.66
3299 3390 2.938956 AGGCTACACTTGCTTGAACT 57.061 45.000 0.00 0.00 0.00 3.01
3300 3391 4.065789 ACTTAGGCTACACTTGCTTGAAC 58.934 43.478 0.00 0.00 0.00 3.18
3301 3392 4.351874 ACTTAGGCTACACTTGCTTGAA 57.648 40.909 0.00 0.00 0.00 2.69
3302 3393 4.040461 AGAACTTAGGCTACACTTGCTTGA 59.960 41.667 0.00 0.00 0.00 3.02
3321 3412 3.944015 AGCATCCAGATAAAGTGCAGAAC 59.056 43.478 0.00 0.00 38.23 3.01
3346 3437 9.575783 CTCTCTACTAGTAAGTGATTGAAAACC 57.424 37.037 3.76 0.00 36.36 3.27
3461 3552 3.555377 CCAATTGAAAGCACAAGCATCCA 60.555 43.478 7.12 0.00 45.49 3.41
3491 3585 9.280174 CAACTTTAAGTGGAGAAGTGGTAAATA 57.720 33.333 0.00 0.00 34.13 1.40
3536 3630 9.386010 ACGGTATGTTGCTTGAAATACTATTTA 57.614 29.630 0.00 0.00 0.00 1.40
3539 3633 7.859325 AACGGTATGTTGCTTGAAATACTAT 57.141 32.000 0.00 0.00 40.00 2.12
3541 3635 7.675962 TTAACGGTATGTTGCTTGAAATACT 57.324 32.000 0.00 0.00 42.01 2.12
3606 3701 5.302357 CCAGAAGTAGGCTTGATTTTGAC 57.698 43.478 0.00 0.00 34.61 3.18
3633 3728 2.954318 CAGGAATGGGCGAAAATGATCT 59.046 45.455 0.00 0.00 0.00 2.75
3644 3739 4.677673 AGCATAATTTTCAGGAATGGGC 57.322 40.909 0.00 0.00 0.00 5.36
3665 3760 4.038642 CGATCCCCTGGTGAAAAAGAAAAA 59.961 41.667 0.00 0.00 0.00 1.94
3666 3761 3.572255 CGATCCCCTGGTGAAAAAGAAAA 59.428 43.478 0.00 0.00 0.00 2.29
3677 3772 1.961180 CTTTCGAGCGATCCCCTGGT 61.961 60.000 0.00 0.00 0.00 4.00
3744 3839 3.566322 CGATCTTCTTCAGGTCCGAGTAT 59.434 47.826 0.00 0.00 0.00 2.12
3792 3887 0.109643 CGACCACCGTTATGTCGTCA 60.110 55.000 0.00 0.00 44.96 4.35
3957 4055 4.410400 CGGCGGCTTCTTCCCCTT 62.410 66.667 7.61 0.00 0.00 3.95
3998 4106 1.002142 CTCTCTCTGCAGATGCTCTCG 60.002 57.143 18.63 3.48 42.66 4.04
4000 4108 1.752498 CACTCTCTCTGCAGATGCTCT 59.248 52.381 18.63 0.00 42.66 4.09
4092 4200 3.449377 TCGCTAATGGTGGTGATCTAACA 59.551 43.478 0.00 0.00 0.00 2.41
4132 4246 0.405973 AAGAACAAAGGGGAGGAGGC 59.594 55.000 0.00 0.00 0.00 4.70
4155 4269 3.658725 TGGAGAGGAGAAAAGGGATAGG 58.341 50.000 0.00 0.00 0.00 2.57
4182 4297 0.689623 CAGCCACCTTGTTCTCCTCT 59.310 55.000 0.00 0.00 0.00 3.69
4189 4304 4.202212 GGACAAATTTACAGCCACCTTGTT 60.202 41.667 0.00 0.00 0.00 2.83
4299 4417 2.498167 CCTTGTCTTGACCCAACAGAG 58.502 52.381 0.00 0.00 0.00 3.35
4301 4419 1.609208 CCCTTGTCTTGACCCAACAG 58.391 55.000 0.00 0.00 0.00 3.16
4302 4420 0.184933 CCCCTTGTCTTGACCCAACA 59.815 55.000 0.00 0.00 0.00 3.33
4303 4421 0.185175 ACCCCTTGTCTTGACCCAAC 59.815 55.000 0.00 0.00 0.00 3.77
4305 4423 1.843421 CACCCCTTGTCTTGACCCA 59.157 57.895 0.00 0.00 0.00 4.51
4306 4424 1.603739 GCACCCCTTGTCTTGACCC 60.604 63.158 0.00 0.00 0.00 4.46
4308 4426 0.606673 GAGGCACCCCTTGTCTTGAC 60.607 60.000 0.00 0.00 41.66 3.18
4310 4428 1.303643 GGAGGCACCCCTTGTCTTG 60.304 63.158 0.00 0.00 41.66 3.02
4311 4429 1.360393 TTGGAGGCACCCCTTGTCTT 61.360 55.000 0.00 0.00 41.66 3.01
4312 4430 1.142688 ATTGGAGGCACCCCTTGTCT 61.143 55.000 0.00 0.00 45.54 3.41
4313 4431 0.251787 AATTGGAGGCACCCCTTGTC 60.252 55.000 0.00 0.00 43.12 3.18
4314 4432 1.080638 TAATTGGAGGCACCCCTTGT 58.919 50.000 0.00 0.00 43.12 3.16
4358 4477 4.278975 ACAGAGAGTCCAAGTTGATTCC 57.721 45.455 3.87 0.00 0.00 3.01
4360 4479 6.351711 CCAGATACAGAGAGTCCAAGTTGATT 60.352 42.308 3.87 0.00 0.00 2.57
4363 4482 4.382470 CCCAGATACAGAGAGTCCAAGTTG 60.382 50.000 0.00 0.00 0.00 3.16
4374 4493 2.158986 CCTTGCTCACCCAGATACAGAG 60.159 54.545 0.00 0.00 0.00 3.35
4376 4495 1.556911 ACCTTGCTCACCCAGATACAG 59.443 52.381 0.00 0.00 0.00 2.74
4423 4544 3.496130 GCGTTGATATCCTTCTCATGTGG 59.504 47.826 0.00 0.00 0.00 4.17
4484 4605 4.008330 ACTGGCAATCTGATCAAGTTCAG 58.992 43.478 0.00 3.26 43.70 3.02
4498 4619 0.606401 CGACTGTCCCAACTGGCAAT 60.606 55.000 1.55 0.00 32.07 3.56
4514 4635 7.647907 TCTAAACTTAATTCTGTTGGACGAC 57.352 36.000 0.00 0.00 0.00 4.34
4517 4638 9.010029 TCCAATCTAAACTTAATTCTGTTGGAC 57.990 33.333 0.00 0.00 37.17 4.02
4531 4653 4.927267 TGGGTGTGATCCAATCTAAACT 57.073 40.909 0.00 0.00 0.00 2.66
4534 4656 4.202461 GGCTATGGGTGTGATCCAATCTAA 60.202 45.833 0.00 0.00 37.87 2.10
4538 4669 2.138542 AGGCTATGGGTGTGATCCAAT 58.861 47.619 0.00 0.00 37.87 3.16
4569 4700 0.250234 TGAGAGAGACAATTGGGCCG 59.750 55.000 10.83 0.00 0.00 6.13
4600 4737 2.835764 TCTACCGCCACTCCAGTAAAAT 59.164 45.455 0.00 0.00 0.00 1.82
4622 4759 3.660959 TGGGACGGAGGGACTAATTTAT 58.339 45.455 0.00 0.00 41.55 1.40
4631 4768 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4632 4769 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4633 4770 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4634 4771 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4635 4772 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4636 4773 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4637 4774 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4638 4775 7.855904 CACAAAAACGCTCTTATATTATGGGAC 59.144 37.037 0.00 0.00 0.00 4.46
4639 4776 7.771361 TCACAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4640 4777 7.925993 TCACAAAAACGCTCTTATATTATGGG 58.074 34.615 0.00 0.00 0.00 4.00
4641 4778 7.587757 GCTCACAAAAACGCTCTTATATTATGG 59.412 37.037 0.00 0.00 0.00 2.74
4642 4779 7.318909 CGCTCACAAAAACGCTCTTATATTATG 59.681 37.037 0.00 0.00 0.00 1.90
4643 4780 7.011109 ACGCTCACAAAAACGCTCTTATATTAT 59.989 33.333 0.00 0.00 0.00 1.28
4644 4781 6.311935 ACGCTCACAAAAACGCTCTTATATTA 59.688 34.615 0.00 0.00 0.00 0.98
4645 4782 5.121768 ACGCTCACAAAAACGCTCTTATATT 59.878 36.000 0.00 0.00 0.00 1.28
4646 4783 4.630069 ACGCTCACAAAAACGCTCTTATAT 59.370 37.500 0.00 0.00 0.00 0.86
4647 4784 3.991773 ACGCTCACAAAAACGCTCTTATA 59.008 39.130 0.00 0.00 0.00 0.98
4648 4785 2.806244 ACGCTCACAAAAACGCTCTTAT 59.194 40.909 0.00 0.00 0.00 1.73
4649 4786 2.206750 ACGCTCACAAAAACGCTCTTA 58.793 42.857 0.00 0.00 0.00 2.10
4650 4787 1.014352 ACGCTCACAAAAACGCTCTT 58.986 45.000 0.00 0.00 0.00 2.85
4651 4788 1.014352 AACGCTCACAAAAACGCTCT 58.986 45.000 0.00 0.00 0.00 4.09
4652 4789 1.822581 AAACGCTCACAAAAACGCTC 58.177 45.000 0.00 0.00 0.00 5.03
4653 4790 2.271821 AAAACGCTCACAAAAACGCT 57.728 40.000 0.00 0.00 0.00 5.07
4654 4791 2.847133 TGTAAAACGCTCACAAAAACGC 59.153 40.909 0.00 0.00 0.00 4.84
4655 4792 3.846896 TGTGTAAAACGCTCACAAAAACG 59.153 39.130 0.00 0.00 38.80 3.60
4656 4793 5.748872 TTGTGTAAAACGCTCACAAAAAC 57.251 34.783 7.36 0.00 44.43 2.43
4657 4794 6.582264 GTTTTGTGTAAAACGCTCACAAAAA 58.418 32.000 25.72 14.16 44.19 1.94
4658 4795 6.142122 GTTTTGTGTAAAACGCTCACAAAA 57.858 33.333 22.53 22.53 44.19 2.44
4659 4796 5.748872 GTTTTGTGTAAAACGCTCACAAA 57.251 34.783 15.43 15.43 44.19 2.83
4671 4808 9.661563 CCCATAGTATAAGAGTGTTTTGTGTAA 57.338 33.333 0.00 0.00 0.00 2.41
4672 4809 8.262227 CCCCATAGTATAAGAGTGTTTTGTGTA 58.738 37.037 0.00 0.00 0.00 2.90
4673 4810 7.110155 CCCCATAGTATAAGAGTGTTTTGTGT 58.890 38.462 0.00 0.00 0.00 3.72
4674 4811 6.038271 GCCCCATAGTATAAGAGTGTTTTGTG 59.962 42.308 0.00 0.00 0.00 3.33
4675 4812 6.120220 GCCCCATAGTATAAGAGTGTTTTGT 58.880 40.000 0.00 0.00 0.00 2.83
4676 4813 5.236478 CGCCCCATAGTATAAGAGTGTTTTG 59.764 44.000 0.00 0.00 0.00 2.44
4677 4814 5.365619 CGCCCCATAGTATAAGAGTGTTTT 58.634 41.667 0.00 0.00 0.00 2.43
4678 4815 4.202326 CCGCCCCATAGTATAAGAGTGTTT 60.202 45.833 0.00 0.00 0.00 2.83
4679 4816 3.323979 CCGCCCCATAGTATAAGAGTGTT 59.676 47.826 0.00 0.00 0.00 3.32
4680 4817 2.897969 CCGCCCCATAGTATAAGAGTGT 59.102 50.000 0.00 0.00 0.00 3.55
4681 4818 3.162666 TCCGCCCCATAGTATAAGAGTG 58.837 50.000 0.00 0.00 0.00 3.51
4682 4819 3.432378 CTCCGCCCCATAGTATAAGAGT 58.568 50.000 0.00 0.00 0.00 3.24
4683 4820 2.761208 CCTCCGCCCCATAGTATAAGAG 59.239 54.545 0.00 0.00 0.00 2.85
4684 4821 2.559026 CCCTCCGCCCCATAGTATAAGA 60.559 54.545 0.00 0.00 0.00 2.10
4685 4822 1.831736 CCCTCCGCCCCATAGTATAAG 59.168 57.143 0.00 0.00 0.00 1.73
4686 4823 1.433985 TCCCTCCGCCCCATAGTATAA 59.566 52.381 0.00 0.00 0.00 0.98
4687 4824 1.006758 CTCCCTCCGCCCCATAGTATA 59.993 57.143 0.00 0.00 0.00 1.47
4688 4825 0.252284 CTCCCTCCGCCCCATAGTAT 60.252 60.000 0.00 0.00 0.00 2.12
4689 4826 1.155390 CTCCCTCCGCCCCATAGTA 59.845 63.158 0.00 0.00 0.00 1.82
4690 4827 1.661990 TACTCCCTCCGCCCCATAGT 61.662 60.000 0.00 0.00 0.00 2.12
4691 4828 0.900647 CTACTCCCTCCGCCCCATAG 60.901 65.000 0.00 0.00 0.00 2.23
4692 4829 1.155390 CTACTCCCTCCGCCCCATA 59.845 63.158 0.00 0.00 0.00 2.74
4693 4830 2.122813 CTACTCCCTCCGCCCCAT 60.123 66.667 0.00 0.00 0.00 4.00
4695 4832 4.862823 AGCTACTCCCTCCGCCCC 62.863 72.222 0.00 0.00 0.00 5.80
4696 4833 3.541713 CAGCTACTCCCTCCGCCC 61.542 72.222 0.00 0.00 0.00 6.13
4697 4834 3.541713 CCAGCTACTCCCTCCGCC 61.542 72.222 0.00 0.00 0.00 6.13
4698 4835 4.228567 GCCAGCTACTCCCTCCGC 62.229 72.222 0.00 0.00 0.00 5.54
4699 4836 2.303549 CTTGCCAGCTACTCCCTCCG 62.304 65.000 0.00 0.00 0.00 4.63
4700 4837 1.524482 CTTGCCAGCTACTCCCTCC 59.476 63.158 0.00 0.00 0.00 4.30
4701 4838 1.153269 GCTTGCCAGCTACTCCCTC 60.153 63.158 1.78 0.00 43.51 4.30
4702 4839 2.993853 GCTTGCCAGCTACTCCCT 59.006 61.111 1.78 0.00 43.51 4.20
4711 4848 0.601558 AATGACAAGCTGCTTGCCAG 59.398 50.000 35.22 17.33 44.43 4.85
4712 4849 1.000060 GAAATGACAAGCTGCTTGCCA 60.000 47.619 35.22 32.08 44.43 4.92
4713 4850 1.000060 TGAAATGACAAGCTGCTTGCC 60.000 47.619 35.22 27.93 44.43 4.52
4714 4851 2.056577 GTGAAATGACAAGCTGCTTGC 58.943 47.619 35.22 27.75 44.43 4.01
4715 4852 3.004002 TCTGTGAAATGACAAGCTGCTTG 59.996 43.478 34.07 34.07 45.85 4.01
4716 4853 3.216800 TCTGTGAAATGACAAGCTGCTT 58.783 40.909 9.53 9.53 0.00 3.91
4717 4854 2.854963 TCTGTGAAATGACAAGCTGCT 58.145 42.857 0.00 0.00 0.00 4.24
4718 4855 3.844577 ATCTGTGAAATGACAAGCTGC 57.155 42.857 0.00 0.00 0.00 5.25
4719 4856 7.648908 TGTTTTTATCTGTGAAATGACAAGCTG 59.351 33.333 0.00 0.00 0.00 4.24
4720 4857 7.715657 TGTTTTTATCTGTGAAATGACAAGCT 58.284 30.769 0.00 0.00 0.00 3.74
4721 4858 7.928908 TGTTTTTATCTGTGAAATGACAAGC 57.071 32.000 0.00 0.00 0.00 4.01
4722 4859 8.471457 CGTTGTTTTTATCTGTGAAATGACAAG 58.529 33.333 0.00 0.00 29.96 3.16
4723 4860 7.043722 GCGTTGTTTTTATCTGTGAAATGACAA 60.044 33.333 0.00 0.00 0.00 3.18
4724 4861 6.416455 GCGTTGTTTTTATCTGTGAAATGACA 59.584 34.615 0.00 0.00 0.00 3.58
4725 4862 6.416455 TGCGTTGTTTTTATCTGTGAAATGAC 59.584 34.615 0.00 0.00 0.00 3.06
4726 4863 6.499172 TGCGTTGTTTTTATCTGTGAAATGA 58.501 32.000 0.00 0.00 0.00 2.57
4727 4864 6.746104 TGCGTTGTTTTTATCTGTGAAATG 57.254 33.333 0.00 0.00 0.00 2.32
4728 4865 7.148983 CGATTGCGTTGTTTTTATCTGTGAAAT 60.149 33.333 0.00 0.00 0.00 2.17
4729 4866 6.141527 CGATTGCGTTGTTTTTATCTGTGAAA 59.858 34.615 0.00 0.00 0.00 2.69
4730 4867 5.623264 CGATTGCGTTGTTTTTATCTGTGAA 59.377 36.000 0.00 0.00 0.00 3.18
4731 4868 5.050023 TCGATTGCGTTGTTTTTATCTGTGA 60.050 36.000 0.00 0.00 38.98 3.58
4732 4869 5.143660 TCGATTGCGTTGTTTTTATCTGTG 58.856 37.500 0.00 0.00 38.98 3.66
4733 4870 5.351233 TCGATTGCGTTGTTTTTATCTGT 57.649 34.783 0.00 0.00 38.98 3.41
4734 4871 4.260656 GCTCGATTGCGTTGTTTTTATCTG 59.739 41.667 0.00 0.00 38.98 2.90
4735 4872 4.083537 TGCTCGATTGCGTTGTTTTTATCT 60.084 37.500 0.00 0.00 38.98 1.98
4736 4873 4.155449 TGCTCGATTGCGTTGTTTTTATC 58.845 39.130 0.00 0.00 38.98 1.75
4737 4874 4.153958 TGCTCGATTGCGTTGTTTTTAT 57.846 36.364 0.00 0.00 38.98 1.40
4738 4875 3.610786 TGCTCGATTGCGTTGTTTTTA 57.389 38.095 0.00 0.00 38.98 1.52
4739 4876 2.483583 TGCTCGATTGCGTTGTTTTT 57.516 40.000 0.00 0.00 38.98 1.94
4740 4877 2.223479 ACTTGCTCGATTGCGTTGTTTT 60.223 40.909 0.00 0.00 38.98 2.43
4741 4878 1.333619 ACTTGCTCGATTGCGTTGTTT 59.666 42.857 0.00 0.00 38.98 2.83
4742 4879 0.944386 ACTTGCTCGATTGCGTTGTT 59.056 45.000 0.00 0.00 38.98 2.83
4743 4880 0.944386 AACTTGCTCGATTGCGTTGT 59.056 45.000 0.00 0.00 38.98 3.32
4744 4881 1.195448 AGAACTTGCTCGATTGCGTTG 59.805 47.619 0.00 0.00 38.98 4.10
4745 4882 1.195448 CAGAACTTGCTCGATTGCGTT 59.805 47.619 0.00 0.00 38.98 4.84
4746 4883 0.792640 CAGAACTTGCTCGATTGCGT 59.207 50.000 0.00 0.00 38.98 5.24
4747 4884 3.575297 CAGAACTTGCTCGATTGCG 57.425 52.632 0.00 0.00 39.35 4.85
4757 4894 6.449698 ACCTGTGAAATTTATGCAGAACTTG 58.550 36.000 14.12 4.07 0.00 3.16
4758 4895 6.655078 ACCTGTGAAATTTATGCAGAACTT 57.345 33.333 14.12 0.00 0.00 2.66
4759 4896 6.265196 TCAACCTGTGAAATTTATGCAGAACT 59.735 34.615 14.12 0.00 31.51 3.01
4760 4897 6.446318 TCAACCTGTGAAATTTATGCAGAAC 58.554 36.000 14.12 0.00 31.51 3.01
4761 4898 6.647334 TCAACCTGTGAAATTTATGCAGAA 57.353 33.333 14.12 0.00 31.51 3.02
4762 4899 6.647334 TTCAACCTGTGAAATTTATGCAGA 57.353 33.333 14.12 0.00 43.43 4.26
4773 4910 6.929625 TGTTTCTCAATTTTCAACCTGTGAA 58.070 32.000 0.00 0.00 44.74 3.18
4774 4911 6.522625 TGTTTCTCAATTTTCAACCTGTGA 57.477 33.333 0.00 0.00 0.00 3.58
4775 4912 7.593875 TTTGTTTCTCAATTTTCAACCTGTG 57.406 32.000 0.00 0.00 35.84 3.66
4776 4913 7.877612 AGTTTTGTTTCTCAATTTTCAACCTGT 59.122 29.630 0.00 0.00 35.84 4.00
4777 4914 8.255394 AGTTTTGTTTCTCAATTTTCAACCTG 57.745 30.769 0.00 0.00 35.84 4.00
4778 4915 8.720562 CAAGTTTTGTTTCTCAATTTTCAACCT 58.279 29.630 0.00 0.00 35.84 3.50
4779 4916 7.962373 CCAAGTTTTGTTTCTCAATTTTCAACC 59.038 33.333 0.00 0.00 35.84 3.77
4780 4917 7.962373 CCCAAGTTTTGTTTCTCAATTTTCAAC 59.038 33.333 0.00 0.00 35.84 3.18
4781 4918 7.663493 ACCCAAGTTTTGTTTCTCAATTTTCAA 59.337 29.630 0.00 0.00 35.84 2.69
4782 4919 7.118971 CACCCAAGTTTTGTTTCTCAATTTTCA 59.881 33.333 0.00 0.00 35.84 2.69
4783 4920 7.463544 CACCCAAGTTTTGTTTCTCAATTTTC 58.536 34.615 0.00 0.00 35.84 2.29
4784 4921 6.128035 GCACCCAAGTTTTGTTTCTCAATTTT 60.128 34.615 0.00 0.00 35.84 1.82
4785 4922 5.353956 GCACCCAAGTTTTGTTTCTCAATTT 59.646 36.000 0.00 0.00 35.84 1.82
4786 4923 4.875536 GCACCCAAGTTTTGTTTCTCAATT 59.124 37.500 0.00 0.00 35.84 2.32
4787 4924 4.441792 GCACCCAAGTTTTGTTTCTCAAT 58.558 39.130 0.00 0.00 35.84 2.57
4788 4925 3.368948 GGCACCCAAGTTTTGTTTCTCAA 60.369 43.478 0.00 0.00 0.00 3.02
4789 4926 2.167487 GGCACCCAAGTTTTGTTTCTCA 59.833 45.455 0.00 0.00 0.00 3.27
4790 4927 2.167487 TGGCACCCAAGTTTTGTTTCTC 59.833 45.455 0.00 0.00 0.00 2.87
4791 4928 2.183679 TGGCACCCAAGTTTTGTTTCT 58.816 42.857 0.00 0.00 0.00 2.52
4792 4929 2.682155 TGGCACCCAAGTTTTGTTTC 57.318 45.000 0.00 0.00 0.00 2.78
4793 4930 2.158827 GGATGGCACCCAAGTTTTGTTT 60.159 45.455 0.00 0.00 36.95 2.83
4794 4931 1.416030 GGATGGCACCCAAGTTTTGTT 59.584 47.619 0.00 0.00 36.95 2.83
4795 4932 1.047801 GGATGGCACCCAAGTTTTGT 58.952 50.000 0.00 0.00 36.95 2.83
4796 4933 0.038343 CGGATGGCACCCAAGTTTTG 60.038 55.000 0.00 0.00 36.95 2.44
4797 4934 0.178975 TCGGATGGCACCCAAGTTTT 60.179 50.000 0.00 0.00 36.95 2.43
4798 4935 0.893727 GTCGGATGGCACCCAAGTTT 60.894 55.000 0.00 0.00 36.95 2.66
4799 4936 1.303317 GTCGGATGGCACCCAAGTT 60.303 57.895 0.00 0.00 36.95 2.66
4800 4937 1.779061 AAGTCGGATGGCACCCAAGT 61.779 55.000 0.00 0.00 36.95 3.16
4801 4938 1.002134 AAGTCGGATGGCACCCAAG 60.002 57.895 0.00 0.00 36.95 3.61
4802 4939 1.002624 GAAGTCGGATGGCACCCAA 60.003 57.895 0.00 0.00 36.95 4.12
4803 4940 2.668632 GAAGTCGGATGGCACCCA 59.331 61.111 0.00 0.00 38.19 4.51
4804 4941 2.511600 CGAAGTCGGATGGCACCC 60.512 66.667 0.00 0.00 35.37 4.61
4805 4942 3.195698 GCGAAGTCGGATGGCACC 61.196 66.667 2.47 0.00 40.23 5.01
4806 4943 3.195698 GGCGAAGTCGGATGGCAC 61.196 66.667 2.47 0.00 40.23 5.01
4807 4944 4.467084 GGGCGAAGTCGGATGGCA 62.467 66.667 2.47 0.00 40.23 4.92
4809 4946 2.845752 TTTCGGGCGAAGTCGGATGG 62.846 60.000 2.47 0.00 42.05 3.51
4810 4947 0.810031 ATTTCGGGCGAAGTCGGATG 60.810 55.000 2.47 0.00 42.05 3.51
4811 4948 0.107848 AATTTCGGGCGAAGTCGGAT 60.108 50.000 2.47 0.00 42.05 4.18
4812 4949 0.738412 GAATTTCGGGCGAAGTCGGA 60.738 55.000 2.47 0.00 40.42 4.55
4813 4950 1.713830 GAATTTCGGGCGAAGTCGG 59.286 57.895 2.47 0.00 40.23 4.79
4814 4951 1.074319 TCGAATTTCGGGCGAAGTCG 61.074 55.000 18.02 5.74 40.88 4.18
4815 4952 0.369248 GTCGAATTTCGGGCGAAGTC 59.631 55.000 18.02 0.00 40.88 3.01
4816 4953 1.349259 CGTCGAATTTCGGGCGAAGT 61.349 55.000 22.38 0.00 40.88 3.01
4817 4954 1.074319 TCGTCGAATTTCGGGCGAAG 61.074 55.000 25.00 9.64 41.46 3.79
4818 4955 0.458889 ATCGTCGAATTTCGGGCGAA 60.459 50.000 28.13 18.39 44.73 4.70
4819 4956 0.868602 GATCGTCGAATTTCGGGCGA 60.869 55.000 27.30 27.30 45.23 5.54
4820 4957 1.558383 GATCGTCGAATTTCGGGCG 59.442 57.895 18.02 20.08 40.88 6.13
4821 4958 0.868602 TCGATCGTCGAATTTCGGGC 60.869 55.000 18.02 10.67 46.90 6.13
4822 4959 3.245443 TCGATCGTCGAATTTCGGG 57.755 52.632 18.02 10.88 46.90 5.14
4839 4976 4.467735 GGAGAACAACTTGCGAAGATTTC 58.532 43.478 3.37 3.34 0.00 2.17
4840 4977 3.253432 GGGAGAACAACTTGCGAAGATTT 59.747 43.478 3.37 0.00 0.00 2.17
4841 4978 2.814336 GGGAGAACAACTTGCGAAGATT 59.186 45.455 3.37 0.00 0.00 2.40
4842 4979 2.039084 AGGGAGAACAACTTGCGAAGAT 59.961 45.455 3.37 0.00 0.00 2.40
4843 4980 1.416401 AGGGAGAACAACTTGCGAAGA 59.584 47.619 3.37 0.00 0.00 2.87
4844 4981 1.884235 AGGGAGAACAACTTGCGAAG 58.116 50.000 0.00 0.00 0.00 3.79
4845 4982 2.341846 AAGGGAGAACAACTTGCGAA 57.658 45.000 0.00 0.00 0.00 4.70
4846 4983 1.946768 CAAAGGGAGAACAACTTGCGA 59.053 47.619 0.00 0.00 0.00 5.10
4847 4984 1.946768 TCAAAGGGAGAACAACTTGCG 59.053 47.619 0.00 0.00 0.00 4.85
4858 4995 0.701147 AAAGGAGGCCTCAAAGGGAG 59.299 55.000 33.29 0.00 43.65 4.30
4859 4996 0.405585 CAAAGGAGGCCTCAAAGGGA 59.594 55.000 33.29 0.00 35.37 4.20
4860 4997 0.613012 CCAAAGGAGGCCTCAAAGGG 60.613 60.000 33.29 23.54 35.37 3.95
4861 4998 0.113190 ACCAAAGGAGGCCTCAAAGG 59.887 55.000 33.29 27.57 38.80 3.11
4862 4999 2.001076 AACCAAAGGAGGCCTCAAAG 57.999 50.000 33.29 18.94 30.89 2.77
4863 5000 2.038659 CAAACCAAAGGAGGCCTCAAA 58.961 47.619 33.29 0.00 30.89 2.69
4864 5001 1.063266 ACAAACCAAAGGAGGCCTCAA 60.063 47.619 33.29 0.00 30.89 3.02
4865 5002 0.555769 ACAAACCAAAGGAGGCCTCA 59.444 50.000 33.29 0.00 30.89 3.86
4866 5003 2.437413 CTACAAACCAAAGGAGGCCTC 58.563 52.381 25.59 25.59 30.89 4.70
4867 5004 1.075536 CCTACAAACCAAAGGAGGCCT 59.924 52.381 3.86 3.86 33.87 5.19
4868 5005 1.074889 TCCTACAAACCAAAGGAGGCC 59.925 52.381 0.00 0.00 34.46 5.19
4869 5006 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
4870 5007 6.183360 ACAAAAATCCTACAAACCAAAGGAGG 60.183 38.462 0.00 0.00 42.53 4.30
4871 5008 6.816136 ACAAAAATCCTACAAACCAAAGGAG 58.184 36.000 0.00 0.00 42.53 3.69
4872 5009 6.800072 ACAAAAATCCTACAAACCAAAGGA 57.200 33.333 0.00 0.00 43.38 3.36
4873 5010 7.014808 TCCTACAAAAATCCTACAAACCAAAGG 59.985 37.037 0.00 0.00 0.00 3.11
4874 5011 7.947282 TCCTACAAAAATCCTACAAACCAAAG 58.053 34.615 0.00 0.00 0.00 2.77
4875 5012 7.899648 TCCTACAAAAATCCTACAAACCAAA 57.100 32.000 0.00 0.00 0.00 3.28
4876 5013 7.899648 TTCCTACAAAAATCCTACAAACCAA 57.100 32.000 0.00 0.00 0.00 3.67
4877 5014 8.485578 AATTCCTACAAAAATCCTACAAACCA 57.514 30.769 0.00 0.00 0.00 3.67
4878 5015 8.803235 AGAATTCCTACAAAAATCCTACAAACC 58.197 33.333 0.65 0.00 0.00 3.27
4894 5031 9.825109 GCAAATCCTATCCTATAGAATTCCTAC 57.175 37.037 0.00 0.00 0.00 3.18
4895 5032 9.560860 TGCAAATCCTATCCTATAGAATTCCTA 57.439 33.333 0.00 0.00 0.00 2.94
4896 5033 8.454859 TGCAAATCCTATCCTATAGAATTCCT 57.545 34.615 0.00 0.00 0.00 3.36
4897 5034 9.520515 TTTGCAAATCCTATCCTATAGAATTCC 57.479 33.333 8.05 0.00 0.00 3.01
4926 5063 6.000246 TCAAAGGGCTTCAAAGGAATTTTT 58.000 33.333 0.00 0.00 31.34 1.94
4927 5064 5.628797 TCAAAGGGCTTCAAAGGAATTTT 57.371 34.783 0.00 0.00 31.34 1.82
4928 5065 5.830799 ATCAAAGGGCTTCAAAGGAATTT 57.169 34.783 0.00 0.00 31.34 1.82
4929 5066 5.830799 AATCAAAGGGCTTCAAAGGAATT 57.169 34.783 0.00 0.00 31.34 2.17
4930 5067 5.072193 ACAAATCAAAGGGCTTCAAAGGAAT 59.928 36.000 0.00 0.00 31.34 3.01
4931 5068 4.408596 ACAAATCAAAGGGCTTCAAAGGAA 59.591 37.500 0.00 0.00 0.00 3.36
4932 5069 3.966665 ACAAATCAAAGGGCTTCAAAGGA 59.033 39.130 0.00 0.00 0.00 3.36
4933 5070 4.341366 ACAAATCAAAGGGCTTCAAAGG 57.659 40.909 0.00 0.00 0.00 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.