Multiple sequence alignment - TraesCS5A01G504700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G504700 chr5A 100.000 4613 0 0 1 4613 670255576 670250964 0.000000e+00 8519
1 TraesCS5A01G504700 chr4D 93.175 4088 181 47 563 4609 488500129 488496099 0.000000e+00 5914
2 TraesCS5A01G504700 chr4D 94.149 188 11 0 172 359 488500313 488500126 2.100000e-73 287
3 TraesCS5A01G504700 chr4B 93.258 3812 180 37 855 4609 625122539 625118748 0.000000e+00 5544
4 TraesCS5A01G504700 chr4B 100.000 69 0 0 17 85 625223523 625223455 1.350000e-25 128
5 TraesCS5A01G504700 chr7A 80.000 155 21 5 1543 1687 594467351 594467197 6.310000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G504700 chr5A 670250964 670255576 4612 True 8519.0 8519 100.000 1 4613 1 chr5A.!!$R1 4612
1 TraesCS5A01G504700 chr4D 488496099 488500313 4214 True 3100.5 5914 93.662 172 4609 2 chr4D.!!$R1 4437
2 TraesCS5A01G504700 chr4B 625118748 625122539 3791 True 5544.0 5544 93.258 855 4609 1 chr4B.!!$R1 3754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 506 0.178953 AGGTGTGCTTGGAGCCAATT 60.179 50.0 1.86 0.0 41.51 2.32 F
506 507 0.244721 GGTGTGCTTGGAGCCAATTC 59.755 55.0 1.86 0.0 41.51 2.17 F
1015 1038 0.321653 CCACCCTCTTTCTTGTCCCG 60.322 60.0 0.00 0.0 0.00 5.14 F
2466 2492 0.179032 TGCGAGGTGTGGTGATGTTT 60.179 50.0 0.00 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 2152 0.248094 TGTACATCTCGAGAAGCGCG 60.248 55.000 20.91 0.0 40.61 6.86 R
2258 2284 3.057969 AGGAACAATGTGATCGCTTCA 57.942 42.857 7.94 0.0 0.00 3.02 R
2753 2779 0.616395 TAAGATCACCTGCCCGACCA 60.616 55.000 0.00 0.0 0.00 4.02 R
3733 3773 0.665298 GGCGATGCTTCTTCCAATCC 59.335 55.000 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.801299 TGAAAAGGAAGCAATGTGTATAATTCA 58.199 29.630 0.00 0.00 0.00 2.57
27 28 9.807649 GAAAAGGAAGCAATGTGTATAATTCAT 57.192 29.630 0.00 0.00 0.00 2.57
28 29 9.590451 AAAAGGAAGCAATGTGTATAATTCATG 57.410 29.630 0.00 0.00 0.00 3.07
29 30 6.742109 AGGAAGCAATGTGTATAATTCATGC 58.258 36.000 0.00 0.00 0.00 4.06
30 31 5.626543 GGAAGCAATGTGTATAATTCATGCG 59.373 40.000 0.00 0.00 0.00 4.73
31 32 5.756195 AGCAATGTGTATAATTCATGCGT 57.244 34.783 0.00 0.00 0.00 5.24
32 33 5.751680 AGCAATGTGTATAATTCATGCGTC 58.248 37.500 0.00 0.00 0.00 5.19
33 34 5.528690 AGCAATGTGTATAATTCATGCGTCT 59.471 36.000 0.00 0.00 0.00 4.18
34 35 6.038603 AGCAATGTGTATAATTCATGCGTCTT 59.961 34.615 0.00 0.00 0.00 3.01
35 36 6.141211 GCAATGTGTATAATTCATGCGTCTTG 59.859 38.462 0.00 0.00 0.00 3.02
36 37 7.408910 CAATGTGTATAATTCATGCGTCTTGA 58.591 34.615 0.00 0.00 0.00 3.02
37 38 6.976636 TGTGTATAATTCATGCGTCTTGAA 57.023 33.333 9.40 9.40 37.49 2.69
38 39 7.371126 TGTGTATAATTCATGCGTCTTGAAA 57.629 32.000 10.51 0.08 36.72 2.69
39 40 7.240674 TGTGTATAATTCATGCGTCTTGAAAC 58.759 34.615 10.51 6.64 36.72 2.78
40 41 7.095017 TGTGTATAATTCATGCGTCTTGAAACA 60.095 33.333 10.51 8.38 36.72 2.83
41 42 7.910162 GTGTATAATTCATGCGTCTTGAAACAT 59.090 33.333 10.51 9.39 36.72 2.71
42 43 7.909641 TGTATAATTCATGCGTCTTGAAACATG 59.090 33.333 10.51 0.00 40.97 3.21
43 44 3.557577 TTCATGCGTCTTGAAACATGG 57.442 42.857 0.00 0.00 40.22 3.66
44 45 1.811965 TCATGCGTCTTGAAACATGGG 59.188 47.619 0.00 0.00 40.22 4.00
45 46 0.527565 ATGCGTCTTGAAACATGGGC 59.472 50.000 0.00 0.00 0.00 5.36
46 47 0.537143 TGCGTCTTGAAACATGGGCT 60.537 50.000 0.00 0.00 0.00 5.19
47 48 1.271108 TGCGTCTTGAAACATGGGCTA 60.271 47.619 0.00 0.00 0.00 3.93
48 49 1.398390 GCGTCTTGAAACATGGGCTAG 59.602 52.381 0.00 0.00 0.00 3.42
49 50 1.398390 CGTCTTGAAACATGGGCTAGC 59.602 52.381 6.04 6.04 0.00 3.42
50 51 2.436417 GTCTTGAAACATGGGCTAGCA 58.564 47.619 18.24 0.00 0.00 3.49
51 52 2.819608 GTCTTGAAACATGGGCTAGCAA 59.180 45.455 18.24 4.19 0.00 3.91
52 53 2.819608 TCTTGAAACATGGGCTAGCAAC 59.180 45.455 18.24 9.44 0.00 4.17
53 54 2.584835 TGAAACATGGGCTAGCAACT 57.415 45.000 18.24 0.00 0.00 3.16
54 55 2.875296 TGAAACATGGGCTAGCAACTT 58.125 42.857 18.24 4.16 0.00 2.66
55 56 4.027674 TGAAACATGGGCTAGCAACTTA 57.972 40.909 18.24 0.00 0.00 2.24
56 57 3.756434 TGAAACATGGGCTAGCAACTTAC 59.244 43.478 18.24 0.00 0.00 2.34
57 58 2.024176 ACATGGGCTAGCAACTTACG 57.976 50.000 18.24 0.13 0.00 3.18
58 59 1.299541 CATGGGCTAGCAACTTACGG 58.700 55.000 18.24 0.00 0.00 4.02
59 60 1.134521 CATGGGCTAGCAACTTACGGA 60.135 52.381 18.24 0.00 0.00 4.69
60 61 0.535335 TGGGCTAGCAACTTACGGAG 59.465 55.000 18.24 0.00 0.00 4.63
61 62 0.179081 GGGCTAGCAACTTACGGAGG 60.179 60.000 18.24 0.00 0.00 4.30
62 63 0.822164 GGCTAGCAACTTACGGAGGA 59.178 55.000 18.24 0.00 0.00 3.71
63 64 1.471153 GGCTAGCAACTTACGGAGGAC 60.471 57.143 18.24 0.00 0.00 3.85
64 65 1.203994 GCTAGCAACTTACGGAGGACA 59.796 52.381 10.63 0.00 0.00 4.02
65 66 2.159085 GCTAGCAACTTACGGAGGACAT 60.159 50.000 10.63 0.00 0.00 3.06
66 67 2.674796 AGCAACTTACGGAGGACATC 57.325 50.000 0.00 0.00 0.00 3.06
67 68 2.180276 AGCAACTTACGGAGGACATCT 58.820 47.619 0.00 0.00 0.00 2.90
68 69 2.093973 AGCAACTTACGGAGGACATCTG 60.094 50.000 0.00 0.00 40.48 2.90
69 70 2.271800 CAACTTACGGAGGACATCTGC 58.728 52.381 0.00 0.00 37.90 4.26
70 71 1.853963 ACTTACGGAGGACATCTGCT 58.146 50.000 0.00 0.00 37.90 4.24
71 72 3.014304 ACTTACGGAGGACATCTGCTA 57.986 47.619 0.00 0.00 37.90 3.49
72 73 3.567397 ACTTACGGAGGACATCTGCTAT 58.433 45.455 0.00 0.00 37.90 2.97
73 74 3.570550 ACTTACGGAGGACATCTGCTATC 59.429 47.826 0.00 0.00 37.90 2.08
74 75 2.073252 ACGGAGGACATCTGCTATCA 57.927 50.000 0.00 0.00 37.90 2.15
75 76 2.603021 ACGGAGGACATCTGCTATCAT 58.397 47.619 0.00 0.00 37.90 2.45
76 77 2.560542 ACGGAGGACATCTGCTATCATC 59.439 50.000 0.00 0.00 37.90 2.92
77 78 2.560105 CGGAGGACATCTGCTATCATCA 59.440 50.000 0.00 0.00 0.00 3.07
78 79 3.613671 CGGAGGACATCTGCTATCATCAC 60.614 52.174 0.00 0.00 0.00 3.06
79 80 3.323115 GGAGGACATCTGCTATCATCACA 59.677 47.826 0.00 0.00 0.00 3.58
80 81 4.305769 GAGGACATCTGCTATCATCACAC 58.694 47.826 0.00 0.00 0.00 3.82
81 82 3.070734 AGGACATCTGCTATCATCACACC 59.929 47.826 0.00 0.00 0.00 4.16
82 83 3.070734 GGACATCTGCTATCATCACACCT 59.929 47.826 0.00 0.00 0.00 4.00
83 84 4.056740 GACATCTGCTATCATCACACCTG 58.943 47.826 0.00 0.00 0.00 4.00
84 85 3.708121 ACATCTGCTATCATCACACCTGA 59.292 43.478 0.00 0.00 0.00 3.86
85 86 4.347292 ACATCTGCTATCATCACACCTGAT 59.653 41.667 0.00 0.00 37.65 2.90
86 87 5.163227 ACATCTGCTATCATCACACCTGATT 60.163 40.000 0.00 0.00 34.65 2.57
87 88 6.042437 ACATCTGCTATCATCACACCTGATTA 59.958 38.462 0.00 0.00 34.65 1.75
88 89 6.676990 TCTGCTATCATCACACCTGATTAT 57.323 37.500 0.00 0.00 34.65 1.28
89 90 6.695429 TCTGCTATCATCACACCTGATTATC 58.305 40.000 0.00 0.00 34.65 1.75
90 91 6.268387 TCTGCTATCATCACACCTGATTATCA 59.732 38.462 0.00 0.00 34.65 2.15
91 92 7.012661 TGCTATCATCACACCTGATTATCAT 57.987 36.000 0.00 0.00 34.65 2.45
92 93 7.101700 TGCTATCATCACACCTGATTATCATC 58.898 38.462 0.00 0.00 34.65 2.92
93 94 7.101700 GCTATCATCACACCTGATTATCATCA 58.898 38.462 0.00 0.00 34.65 3.07
106 107 7.165427 TGATTATCATCAGAACAATTCGTCG 57.835 36.000 0.00 0.00 34.22 5.12
107 108 3.933155 ATCATCAGAACAATTCGTCGC 57.067 42.857 0.00 0.00 34.02 5.19
108 109 2.682836 TCATCAGAACAATTCGTCGCA 58.317 42.857 0.00 0.00 34.02 5.10
109 110 3.063485 TCATCAGAACAATTCGTCGCAA 58.937 40.909 0.00 0.00 34.02 4.85
110 111 3.496507 TCATCAGAACAATTCGTCGCAAA 59.503 39.130 0.00 0.00 34.02 3.68
111 112 4.154015 TCATCAGAACAATTCGTCGCAAAT 59.846 37.500 0.00 0.00 34.02 2.32
112 113 4.481930 TCAGAACAATTCGTCGCAAATT 57.518 36.364 0.00 0.00 34.02 1.82
113 114 4.463209 TCAGAACAATTCGTCGCAAATTC 58.537 39.130 0.00 0.00 34.02 2.17
114 115 4.024472 TCAGAACAATTCGTCGCAAATTCA 60.024 37.500 0.00 0.00 34.02 2.57
115 116 4.674662 CAGAACAATTCGTCGCAAATTCAA 59.325 37.500 0.00 0.00 34.02 2.69
116 117 5.172951 CAGAACAATTCGTCGCAAATTCAAA 59.827 36.000 0.00 0.00 34.02 2.69
117 118 5.746245 AGAACAATTCGTCGCAAATTCAAAA 59.254 32.000 0.00 0.00 34.02 2.44
118 119 5.309652 ACAATTCGTCGCAAATTCAAAAC 57.690 34.783 0.00 0.00 0.00 2.43
119 120 4.800993 ACAATTCGTCGCAAATTCAAAACA 59.199 33.333 0.00 0.00 0.00 2.83
120 121 5.461737 ACAATTCGTCGCAAATTCAAAACAT 59.538 32.000 0.00 0.00 0.00 2.71
121 122 6.019156 ACAATTCGTCGCAAATTCAAAACATT 60.019 30.769 0.00 0.00 0.00 2.71
122 123 5.957910 TTCGTCGCAAATTCAAAACATTT 57.042 30.435 0.00 0.00 0.00 2.32
123 124 5.957910 TCGTCGCAAATTCAAAACATTTT 57.042 30.435 0.00 0.00 0.00 1.82
124 125 6.337853 TCGTCGCAAATTCAAAACATTTTT 57.662 29.167 0.00 0.00 0.00 1.94
125 126 6.181255 TCGTCGCAAATTCAAAACATTTTTG 58.819 32.000 5.22 5.22 0.00 2.44
126 127 5.956645 CGTCGCAAATTCAAAACATTTTTGT 59.043 32.000 10.38 0.00 31.56 2.83
127 128 7.009265 TCGTCGCAAATTCAAAACATTTTTGTA 59.991 29.630 10.38 2.90 31.56 2.41
128 129 7.315407 CGTCGCAAATTCAAAACATTTTTGTAG 59.685 33.333 10.38 1.28 31.56 2.74
129 130 8.113675 GTCGCAAATTCAAAACATTTTTGTAGT 58.886 29.630 10.38 0.00 31.56 2.73
130 131 9.302345 TCGCAAATTCAAAACATTTTTGTAGTA 57.698 25.926 10.38 0.00 31.56 1.82
137 138 9.462174 TTCAAAACATTTTTGTAGTATCTGCTG 57.538 29.630 10.38 0.00 0.00 4.41
138 139 8.629158 TCAAAACATTTTTGTAGTATCTGCTGT 58.371 29.630 10.38 0.00 0.00 4.40
139 140 9.248291 CAAAACATTTTTGTAGTATCTGCTGTT 57.752 29.630 3.65 0.00 0.00 3.16
140 141 8.801715 AAACATTTTTGTAGTATCTGCTGTTG 57.198 30.769 0.00 0.00 0.00 3.33
141 142 7.744087 ACATTTTTGTAGTATCTGCTGTTGA 57.256 32.000 0.00 0.00 0.00 3.18
142 143 8.340618 ACATTTTTGTAGTATCTGCTGTTGAT 57.659 30.769 0.00 0.00 0.00 2.57
143 144 9.448438 ACATTTTTGTAGTATCTGCTGTTGATA 57.552 29.630 0.00 0.00 0.00 2.15
144 145 9.708222 CATTTTTGTAGTATCTGCTGTTGATAC 57.292 33.333 11.47 11.47 43.78 2.24
145 146 8.840833 TTTTTGTAGTATCTGCTGTTGATACA 57.159 30.769 17.56 8.74 45.06 2.29
146 147 9.448438 TTTTTGTAGTATCTGCTGTTGATACAT 57.552 29.630 17.56 9.76 45.06 2.29
147 148 9.448438 TTTTGTAGTATCTGCTGTTGATACATT 57.552 29.630 17.56 6.89 45.06 2.71
148 149 9.448438 TTTGTAGTATCTGCTGTTGATACATTT 57.552 29.630 17.56 6.43 45.06 2.32
149 150 9.448438 TTGTAGTATCTGCTGTTGATACATTTT 57.552 29.630 17.56 6.20 45.06 1.82
150 151 9.448438 TGTAGTATCTGCTGTTGATACATTTTT 57.552 29.630 17.56 5.96 45.06 1.94
151 152 9.922305 GTAGTATCTGCTGTTGATACATTTTTC 57.078 33.333 17.56 0.00 45.06 2.29
152 153 7.989826 AGTATCTGCTGTTGATACATTTTTCC 58.010 34.615 17.56 0.00 45.06 3.13
153 154 5.643379 TCTGCTGTTGATACATTTTTCCC 57.357 39.130 0.00 0.00 32.86 3.97
154 155 5.076182 TCTGCTGTTGATACATTTTTCCCA 58.924 37.500 0.00 0.00 32.86 4.37
155 156 5.538053 TCTGCTGTTGATACATTTTTCCCAA 59.462 36.000 0.00 0.00 32.86 4.12
156 157 6.211184 TCTGCTGTTGATACATTTTTCCCAAT 59.789 34.615 0.00 0.00 32.86 3.16
157 158 6.397272 TGCTGTTGATACATTTTTCCCAATC 58.603 36.000 0.00 0.00 32.86 2.67
158 159 6.211184 TGCTGTTGATACATTTTTCCCAATCT 59.789 34.615 0.00 0.00 32.86 2.40
159 160 6.532657 GCTGTTGATACATTTTTCCCAATCTG 59.467 38.462 0.00 0.00 32.86 2.90
160 161 7.537596 TGTTGATACATTTTTCCCAATCTGT 57.462 32.000 0.00 0.00 0.00 3.41
161 162 8.642935 TGTTGATACATTTTTCCCAATCTGTA 57.357 30.769 0.00 0.00 0.00 2.74
162 163 9.253832 TGTTGATACATTTTTCCCAATCTGTAT 57.746 29.630 0.00 0.00 33.69 2.29
163 164 9.736023 GTTGATACATTTTTCCCAATCTGTATC 57.264 33.333 11.62 11.62 42.64 2.24
164 165 8.463930 TGATACATTTTTCCCAATCTGTATCC 57.536 34.615 14.50 2.47 42.09 2.59
165 166 8.058235 TGATACATTTTTCCCAATCTGTATCCA 58.942 33.333 14.50 4.37 42.09 3.41
166 167 6.780457 ACATTTTTCCCAATCTGTATCCAG 57.220 37.500 0.00 0.00 40.25 3.86
167 168 5.127682 ACATTTTTCCCAATCTGTATCCAGC 59.872 40.000 0.00 0.00 38.66 4.85
168 169 4.591321 TTTTCCCAATCTGTATCCAGCT 57.409 40.909 0.00 0.00 38.66 4.24
169 170 5.708736 TTTTCCCAATCTGTATCCAGCTA 57.291 39.130 0.00 0.00 38.66 3.32
170 171 4.689612 TTCCCAATCTGTATCCAGCTAC 57.310 45.455 0.00 0.00 38.66 3.58
206 207 6.562455 GCTTGTTCTCGTAACTCTGTTTTCTC 60.562 42.308 5.30 0.00 0.00 2.87
213 214 6.798482 TCGTAACTCTGTTTTCTCACAAGTA 58.202 36.000 0.00 0.00 0.00 2.24
292 293 1.872773 AAGCAAACAAAACCCCTCCA 58.127 45.000 0.00 0.00 0.00 3.86
300 301 0.178973 AAAACCCCTCCAAACCTCCG 60.179 55.000 0.00 0.00 0.00 4.63
324 325 3.066064 TGCAGTTGTATTTTTCACGCACT 59.934 39.130 0.00 0.00 0.00 4.40
337 338 1.394917 CACGCACTTGTCATTCCTAGC 59.605 52.381 0.00 0.00 0.00 3.42
359 360 3.499338 TGATGCTGGACAATCAAAACCT 58.501 40.909 0.00 0.00 0.00 3.50
360 361 4.661222 TGATGCTGGACAATCAAAACCTA 58.339 39.130 0.00 0.00 0.00 3.08
361 362 5.263599 TGATGCTGGACAATCAAAACCTAT 58.736 37.500 0.00 0.00 0.00 2.57
362 363 5.716228 TGATGCTGGACAATCAAAACCTATT 59.284 36.000 0.00 0.00 0.00 1.73
363 364 6.211184 TGATGCTGGACAATCAAAACCTATTT 59.789 34.615 0.00 0.00 0.00 1.40
364 365 6.418057 TGCTGGACAATCAAAACCTATTTT 57.582 33.333 0.00 0.00 38.61 1.82
368 369 7.524698 GCTGGACAATCAAAACCTATTTTGGTA 60.525 37.037 11.47 0.00 46.32 3.25
369 370 7.891561 TGGACAATCAAAACCTATTTTGGTAG 58.108 34.615 11.47 5.50 46.32 3.18
370 371 7.039363 TGGACAATCAAAACCTATTTTGGTAGG 60.039 37.037 11.47 0.00 46.32 3.18
371 372 6.697395 ACAATCAAAACCTATTTTGGTAGGC 58.303 36.000 11.47 0.00 46.32 3.93
372 373 6.496911 ACAATCAAAACCTATTTTGGTAGGCT 59.503 34.615 11.47 0.00 46.32 4.58
373 374 7.016170 ACAATCAAAACCTATTTTGGTAGGCTT 59.984 33.333 11.47 0.00 46.32 4.35
374 375 7.877612 CAATCAAAACCTATTTTGGTAGGCTTT 59.122 33.333 11.47 0.00 46.32 3.51
375 376 7.877612 AATCAAAACCTATTTTGGTAGGCTTTG 59.122 33.333 16.85 16.85 46.32 2.77
376 377 4.801330 AACCTATTTTGGTAGGCTTTGC 57.199 40.909 0.00 0.00 44.20 3.68
377 378 3.096852 ACCTATTTTGGTAGGCTTTGCC 58.903 45.455 0.00 0.00 44.20 4.52
378 379 3.501385 ACCTATTTTGGTAGGCTTTGCCA 60.501 43.478 11.38 0.00 44.20 4.92
379 380 4.817665 ACCTATTTTGGTAGGCTTTGCCAT 60.818 41.667 11.38 0.00 44.20 4.40
380 381 6.852641 ACCTATTTTGGTAGGCTTTGCCATG 61.853 44.000 11.38 0.00 44.20 3.66
387 388 2.180017 GCTTTGCCATGCCACGAG 59.820 61.111 0.00 0.00 0.00 4.18
388 389 2.180017 CTTTGCCATGCCACGAGC 59.820 61.111 0.00 0.00 44.14 5.03
389 390 2.282391 TTTGCCATGCCACGAGCT 60.282 55.556 0.00 0.00 44.23 4.09
390 391 2.262471 CTTTGCCATGCCACGAGCTC 62.262 60.000 2.73 2.73 44.23 4.09
391 392 3.549900 TTGCCATGCCACGAGCTCA 62.550 57.895 15.40 0.00 44.23 4.26
392 393 2.515523 GCCATGCCACGAGCTCAT 60.516 61.111 15.40 0.00 44.23 2.90
393 394 2.831366 GCCATGCCACGAGCTCATG 61.831 63.158 15.40 9.01 44.23 3.07
394 395 3.417601 CATGCCACGAGCTCATGG 58.582 61.111 24.42 24.42 44.23 3.66
404 405 3.895025 GCTCATGGCGTGACACAT 58.105 55.556 5.03 0.00 32.22 3.21
405 406 1.426621 GCTCATGGCGTGACACATG 59.573 57.895 5.03 10.03 44.40 3.21
406 407 1.985447 GCTCATGGCGTGACACATGG 61.985 60.000 5.03 8.51 43.49 3.66
407 408 0.391528 CTCATGGCGTGACACATGGA 60.392 55.000 5.03 4.32 43.49 3.41
408 409 0.673333 TCATGGCGTGACACATGGAC 60.673 55.000 5.03 0.00 43.49 4.02
409 410 0.954938 CATGGCGTGACACATGGACA 60.955 55.000 6.37 0.00 40.50 4.02
410 411 0.250684 ATGGCGTGACACATGGACAA 60.251 50.000 6.37 0.00 0.00 3.18
411 412 0.464554 TGGCGTGACACATGGACAAA 60.465 50.000 6.37 0.00 0.00 2.83
412 413 0.665835 GGCGTGACACATGGACAAAA 59.334 50.000 6.37 0.00 0.00 2.44
413 414 1.269448 GGCGTGACACATGGACAAAAT 59.731 47.619 6.37 0.00 0.00 1.82
414 415 2.318578 GCGTGACACATGGACAAAATG 58.681 47.619 6.37 0.00 0.00 2.32
415 416 2.318578 CGTGACACATGGACAAAATGC 58.681 47.619 6.37 0.00 0.00 3.56
416 417 2.030893 CGTGACACATGGACAAAATGCT 60.031 45.455 6.37 0.00 0.00 3.79
417 418 3.188254 CGTGACACATGGACAAAATGCTA 59.812 43.478 6.37 0.00 0.00 3.49
418 419 4.320129 CGTGACACATGGACAAAATGCTAA 60.320 41.667 6.37 0.00 0.00 3.09
419 420 5.527951 GTGACACATGGACAAAATGCTAAA 58.472 37.500 0.00 0.00 0.00 1.85
420 421 6.158598 GTGACACATGGACAAAATGCTAAAT 58.841 36.000 0.00 0.00 0.00 1.40
421 422 6.308766 GTGACACATGGACAAAATGCTAAATC 59.691 38.462 0.00 0.00 0.00 2.17
422 423 6.015603 TGACACATGGACAAAATGCTAAATCA 60.016 34.615 0.00 0.00 0.00 2.57
423 424 6.757237 ACACATGGACAAAATGCTAAATCAA 58.243 32.000 0.00 0.00 0.00 2.57
424 425 7.215789 ACACATGGACAAAATGCTAAATCAAA 58.784 30.769 0.00 0.00 0.00 2.69
425 426 7.385752 ACACATGGACAAAATGCTAAATCAAAG 59.614 33.333 0.00 0.00 0.00 2.77
426 427 7.599621 CACATGGACAAAATGCTAAATCAAAGA 59.400 33.333 0.00 0.00 0.00 2.52
427 428 8.316214 ACATGGACAAAATGCTAAATCAAAGAT 58.684 29.630 0.00 0.00 0.00 2.40
428 429 9.806203 CATGGACAAAATGCTAAATCAAAGATA 57.194 29.630 0.00 0.00 0.00 1.98
462 463 7.142306 GACTTTAAGTCAAAATAGGTGGACC 57.858 40.000 19.00 0.00 44.45 4.46
463 464 6.008331 ACTTTAAGTCAAAATAGGTGGACCC 58.992 40.000 0.00 0.00 36.42 4.46
464 465 7.962598 GACTTTAAGTCAAAATAGGTGGACCCT 60.963 40.741 19.00 0.00 44.45 4.34
472 473 2.005370 TAGGTGGACCCTATAAGCCG 57.995 55.000 0.00 0.00 43.87 5.52
473 474 0.263765 AGGTGGACCCTATAAGCCGA 59.736 55.000 0.00 0.00 43.87 5.54
474 475 1.125633 GGTGGACCCTATAAGCCGAA 58.874 55.000 0.00 0.00 0.00 4.30
475 476 1.487558 GGTGGACCCTATAAGCCGAAA 59.512 52.381 0.00 0.00 0.00 3.46
476 477 2.092807 GGTGGACCCTATAAGCCGAAAA 60.093 50.000 0.00 0.00 0.00 2.29
477 478 3.613030 GTGGACCCTATAAGCCGAAAAA 58.387 45.455 0.00 0.00 0.00 1.94
478 479 3.626217 GTGGACCCTATAAGCCGAAAAAG 59.374 47.826 0.00 0.00 0.00 2.27
479 480 3.211865 GGACCCTATAAGCCGAAAAAGG 58.788 50.000 0.00 0.00 0.00 3.11
480 481 3.118149 GGACCCTATAAGCCGAAAAAGGA 60.118 47.826 0.00 0.00 0.00 3.36
481 482 4.127907 GACCCTATAAGCCGAAAAAGGAG 58.872 47.826 0.00 0.00 0.00 3.69
482 483 3.118000 ACCCTATAAGCCGAAAAAGGAGG 60.118 47.826 0.00 0.00 0.00 4.30
483 484 3.477530 CCTATAAGCCGAAAAAGGAGGG 58.522 50.000 0.00 0.00 0.00 4.30
484 485 3.135895 CCTATAAGCCGAAAAAGGAGGGA 59.864 47.826 0.00 0.00 0.00 4.20
485 486 2.781681 TAAGCCGAAAAAGGAGGGAG 57.218 50.000 0.00 0.00 0.00 4.30
486 487 1.064825 AAGCCGAAAAAGGAGGGAGA 58.935 50.000 0.00 0.00 0.00 3.71
487 488 0.615850 AGCCGAAAAAGGAGGGAGAG 59.384 55.000 0.00 0.00 0.00 3.20
488 489 0.393132 GCCGAAAAAGGAGGGAGAGG 60.393 60.000 0.00 0.00 0.00 3.69
489 490 0.984995 CCGAAAAAGGAGGGAGAGGT 59.015 55.000 0.00 0.00 0.00 3.85
490 491 1.339151 CCGAAAAAGGAGGGAGAGGTG 60.339 57.143 0.00 0.00 0.00 4.00
491 492 1.348036 CGAAAAAGGAGGGAGAGGTGT 59.652 52.381 0.00 0.00 0.00 4.16
492 493 2.784347 GAAAAAGGAGGGAGAGGTGTG 58.216 52.381 0.00 0.00 0.00 3.82
493 494 0.402121 AAAAGGAGGGAGAGGTGTGC 59.598 55.000 0.00 0.00 0.00 4.57
494 495 0.474660 AAAGGAGGGAGAGGTGTGCT 60.475 55.000 0.00 0.00 0.00 4.40
495 496 0.474660 AAGGAGGGAGAGGTGTGCTT 60.475 55.000 0.00 0.00 0.00 3.91
496 497 1.197430 AGGAGGGAGAGGTGTGCTTG 61.197 60.000 0.00 0.00 0.00 4.01
497 498 1.298014 GAGGGAGAGGTGTGCTTGG 59.702 63.158 0.00 0.00 0.00 3.61
498 499 1.152030 AGGGAGAGGTGTGCTTGGA 60.152 57.895 0.00 0.00 0.00 3.53
499 500 1.197430 AGGGAGAGGTGTGCTTGGAG 61.197 60.000 0.00 0.00 0.00 3.86
500 501 1.376553 GGAGAGGTGTGCTTGGAGC 60.377 63.158 0.00 0.00 42.82 4.70
501 502 1.376553 GAGAGGTGTGCTTGGAGCC 60.377 63.158 0.00 0.00 41.51 4.70
502 503 2.116983 GAGAGGTGTGCTTGGAGCCA 62.117 60.000 0.00 0.00 41.51 4.75
503 504 1.228245 GAGGTGTGCTTGGAGCCAA 60.228 57.895 1.47 1.47 41.51 4.52
504 505 0.610232 GAGGTGTGCTTGGAGCCAAT 60.610 55.000 1.86 0.00 41.51 3.16
505 506 0.178953 AGGTGTGCTTGGAGCCAATT 60.179 50.000 1.86 0.00 41.51 2.32
506 507 0.244721 GGTGTGCTTGGAGCCAATTC 59.755 55.000 1.86 0.00 41.51 2.17
507 508 0.961019 GTGTGCTTGGAGCCAATTCA 59.039 50.000 1.86 1.77 41.51 2.57
508 509 1.547372 GTGTGCTTGGAGCCAATTCAT 59.453 47.619 1.86 0.00 41.51 2.57
509 510 1.546923 TGTGCTTGGAGCCAATTCATG 59.453 47.619 1.86 0.00 41.51 3.07
522 523 5.488645 CCAATTCATGGGCAAATAAAAGC 57.511 39.130 0.00 0.00 46.27 3.51
523 524 5.187687 CCAATTCATGGGCAAATAAAAGCT 58.812 37.500 0.00 0.00 46.27 3.74
524 525 5.295045 CCAATTCATGGGCAAATAAAAGCTC 59.705 40.000 0.00 0.00 46.27 4.09
525 526 4.470334 TTCATGGGCAAATAAAAGCTCC 57.530 40.909 0.00 0.00 0.00 4.70
526 527 3.439154 TCATGGGCAAATAAAAGCTCCA 58.561 40.909 0.00 0.00 36.18 3.86
527 528 3.195396 TCATGGGCAAATAAAAGCTCCAC 59.805 43.478 0.00 0.00 35.13 4.02
528 529 2.888212 TGGGCAAATAAAAGCTCCACT 58.112 42.857 0.00 0.00 0.00 4.00
529 530 4.040936 TGGGCAAATAAAAGCTCCACTA 57.959 40.909 0.00 0.00 0.00 2.74
530 531 4.411927 TGGGCAAATAAAAGCTCCACTAA 58.588 39.130 0.00 0.00 0.00 2.24
531 532 4.835615 TGGGCAAATAAAAGCTCCACTAAA 59.164 37.500 0.00 0.00 0.00 1.85
532 533 5.047377 TGGGCAAATAAAAGCTCCACTAAAG 60.047 40.000 0.00 0.00 0.00 1.85
533 534 5.047306 GGGCAAATAAAAGCTCCACTAAAGT 60.047 40.000 0.00 0.00 0.00 2.66
534 535 6.455647 GGCAAATAAAAGCTCCACTAAAGTT 58.544 36.000 0.00 0.00 0.00 2.66
535 536 6.929049 GGCAAATAAAAGCTCCACTAAAGTTT 59.071 34.615 0.00 0.00 0.00 2.66
536 537 7.441157 GGCAAATAAAAGCTCCACTAAAGTTTT 59.559 33.333 0.00 0.00 0.00 2.43
537 538 8.275632 GCAAATAAAAGCTCCACTAAAGTTTTG 58.724 33.333 0.00 0.00 29.17 2.44
538 539 9.528018 CAAATAAAAGCTCCACTAAAGTTTTGA 57.472 29.630 4.00 0.00 29.17 2.69
543 544 6.502136 AGCTCCACTAAAGTTTTGAATAGC 57.498 37.500 4.00 8.51 0.00 2.97
544 545 5.416013 AGCTCCACTAAAGTTTTGAATAGCC 59.584 40.000 4.00 0.00 0.00 3.93
545 546 5.183140 GCTCCACTAAAGTTTTGAATAGCCA 59.817 40.000 4.00 0.00 0.00 4.75
546 547 6.294508 GCTCCACTAAAGTTTTGAATAGCCAA 60.295 38.462 4.00 0.00 0.00 4.52
547 548 6.977213 TCCACTAAAGTTTTGAATAGCCAAC 58.023 36.000 4.00 0.00 0.00 3.77
548 549 6.775629 TCCACTAAAGTTTTGAATAGCCAACT 59.224 34.615 4.00 0.00 0.00 3.16
549 550 7.940137 TCCACTAAAGTTTTGAATAGCCAACTA 59.060 33.333 4.00 0.00 0.00 2.24
550 551 8.739972 CCACTAAAGTTTTGAATAGCCAACTAT 58.260 33.333 4.00 0.00 41.01 2.12
555 556 8.831715 AAGTTTTGAATAGCCAACTATTTTGG 57.168 30.769 0.00 0.00 46.79 3.28
556 557 7.962441 AGTTTTGAATAGCCAACTATTTTGGT 58.038 30.769 4.99 0.00 46.79 3.67
557 558 9.084533 AGTTTTGAATAGCCAACTATTTTGGTA 57.915 29.630 4.99 0.00 46.79 3.25
558 559 9.699703 GTTTTGAATAGCCAACTATTTTGGTAA 57.300 29.630 4.99 0.00 46.79 2.85
559 560 9.921637 TTTTGAATAGCCAACTATTTTGGTAAG 57.078 29.630 4.99 0.00 46.79 2.34
560 561 7.639113 TGAATAGCCAACTATTTTGGTAAGG 57.361 36.000 4.99 0.00 46.79 2.69
561 562 6.096282 TGAATAGCCAACTATTTTGGTAAGGC 59.904 38.462 4.99 0.00 46.79 4.35
562 563 3.773560 AGCCAACTATTTTGGTAAGGCA 58.226 40.909 0.00 0.00 41.53 4.75
563 564 4.156477 AGCCAACTATTTTGGTAAGGCAA 58.844 39.130 0.00 0.00 41.53 4.52
564 565 4.021456 AGCCAACTATTTTGGTAAGGCAAC 60.021 41.667 0.00 0.00 41.53 4.17
565 566 4.816392 CCAACTATTTTGGTAAGGCAACC 58.184 43.478 2.29 2.29 40.19 3.77
566 567 4.481463 CAACTATTTTGGTAAGGCAACCG 58.519 43.478 4.80 0.00 42.91 4.44
586 587 4.457466 CCGTAGGCTAAAACCAACCATAT 58.543 43.478 0.00 0.00 46.14 1.78
588 589 4.514066 CGTAGGCTAAAACCAACCATATCC 59.486 45.833 0.00 0.00 0.00 2.59
590 591 4.278310 AGGCTAAAACCAACCATATCCAC 58.722 43.478 0.00 0.00 0.00 4.02
599 600 4.706476 ACCAACCATATCCACATTGTTGAG 59.294 41.667 0.00 0.00 36.15 3.02
613 614 7.970061 CCACATTGTTGAGGATAAAATACACTG 59.030 37.037 0.00 0.00 35.78 3.66
614 615 7.970061 CACATTGTTGAGGATAAAATACACTGG 59.030 37.037 0.00 0.00 0.00 4.00
624 625 9.177927 AGGATAAAATACACTGGATAACCCATA 57.822 33.333 0.00 0.00 45.57 2.74
629 630 4.862641 ACACTGGATAACCCATAAGCTT 57.137 40.909 3.48 3.48 45.57 3.74
632 633 5.428783 ACACTGGATAACCCATAAGCTTAGT 59.571 40.000 12.54 1.63 45.57 2.24
645 646 7.121168 CCCATAAGCTTAGTTGTGATTCAGAAA 59.879 37.037 12.54 0.00 0.00 2.52
651 652 4.590850 AGTTGTGATTCAGAAAAAGCCC 57.409 40.909 0.00 0.00 0.00 5.19
654 655 4.589216 TGTGATTCAGAAAAAGCCCAAG 57.411 40.909 0.00 0.00 0.00 3.61
656 657 4.648762 TGTGATTCAGAAAAAGCCCAAGAA 59.351 37.500 0.00 0.00 0.00 2.52
711 713 8.506168 AAGAAATTTGCCTCATCGACTAATTA 57.494 30.769 0.00 0.00 0.00 1.40
712 714 8.147642 AGAAATTTGCCTCATCGACTAATTAG 57.852 34.615 11.05 11.05 0.00 1.73
713 715 7.987458 AGAAATTTGCCTCATCGACTAATTAGA 59.013 33.333 19.38 0.00 0.00 2.10
716 718 8.994429 ATTTGCCTCATCGACTAATTAGATAG 57.006 34.615 19.38 9.36 0.00 2.08
741 744 9.067986 AGAAAAGAGTTGTTGGTTAATTAGGAG 57.932 33.333 0.00 0.00 0.00 3.69
746 749 9.588096 AGAGTTGTTGGTTAATTAGGAGAAAAT 57.412 29.630 0.00 0.00 0.00 1.82
751 754 9.308000 TGTTGGTTAATTAGGAGAAAATCATGT 57.692 29.630 0.00 0.00 0.00 3.21
791 794 3.057734 CCGAGCGGTAAACAAGATATCC 58.942 50.000 0.00 0.00 0.00 2.59
800 803 5.585047 GGTAAACAAGATATCCCACTCACAC 59.415 44.000 0.00 0.00 0.00 3.82
809 812 1.616865 TCCCACTCACACCTTTACGAG 59.383 52.381 0.00 0.00 0.00 4.18
810 813 1.616865 CCCACTCACACCTTTACGAGA 59.383 52.381 0.00 0.00 0.00 4.04
813 816 3.243771 CCACTCACACCTTTACGAGAAGT 60.244 47.826 0.00 0.00 0.00 3.01
814 817 3.982058 CACTCACACCTTTACGAGAAGTC 59.018 47.826 0.00 0.00 0.00 3.01
818 823 2.360165 ACACCTTTACGAGAAGTCACGT 59.640 45.455 8.75 8.75 44.65 4.49
828 833 2.152016 AGAAGTCACGTCGAGACATCA 58.848 47.619 23.35 0.00 36.48 3.07
849 854 6.358974 TCACATTTGTAGTCATCTTCCTCA 57.641 37.500 0.00 0.00 0.00 3.86
876 881 1.140816 GAGCAAGCGACTTCGACTTT 58.859 50.000 2.02 0.00 43.02 2.66
881 886 1.204312 GCGACTTCGACTTTGCCAC 59.796 57.895 2.02 0.00 43.02 5.01
885 890 0.878961 ACTTCGACTTTGCCACGGAC 60.879 55.000 0.00 0.00 0.00 4.79
910 915 6.409524 AAGAAGCCAAAGAAATGATGTGAA 57.590 33.333 0.00 0.00 0.00 3.18
918 923 6.347888 CCAAAGAAATGATGTGAATGCAAACC 60.348 38.462 0.00 0.00 0.00 3.27
940 953 1.140312 AGCTTGGGTGAAGTTGGAGA 58.860 50.000 0.00 0.00 33.73 3.71
1002 1025 4.295119 GCGACACGTCACCACCCT 62.295 66.667 0.00 0.00 0.00 4.34
1003 1026 2.049433 CGACACGTCACCACCCTC 60.049 66.667 0.00 0.00 0.00 4.30
1004 1027 2.561956 CGACACGTCACCACCCTCT 61.562 63.158 0.00 0.00 0.00 3.69
1005 1028 1.746517 GACACGTCACCACCCTCTT 59.253 57.895 0.00 0.00 0.00 2.85
1015 1038 0.321653 CCACCCTCTTTCTTGTCCCG 60.322 60.000 0.00 0.00 0.00 5.14
1492 1518 4.148825 GATCAGGCTCGGCGTGGT 62.149 66.667 6.85 10.37 43.44 4.16
1704 1730 1.298993 CTGGAGGTGCAGCATGACT 59.701 57.895 19.63 0.00 39.69 3.41
1748 1774 2.393768 CGCGTGCTGCTTGGAATCT 61.394 57.895 0.00 0.00 43.27 2.40
1772 1798 4.431131 ATGCAAGGGCGGGAGGTG 62.431 66.667 0.00 0.00 45.35 4.00
1781 1807 3.849951 CGGGAGGTGCACGCCTAT 61.850 66.667 22.00 2.62 39.34 2.57
1893 1919 1.440353 GTGTTTGCGACGATGCCAC 60.440 57.895 0.00 0.00 0.00 5.01
1937 1963 4.634012 TTGTATGATAGGTGGGTATGCC 57.366 45.455 0.00 0.00 0.00 4.40
1948 1974 2.380081 GGTATGCCCTGAACGAACG 58.620 57.895 0.00 0.00 0.00 3.95
2078 2104 3.003480 GCTGTATGGAAGGAGTGTTCAC 58.997 50.000 0.00 0.00 0.00 3.18
2126 2152 0.459237 CTCATGTGGTGCTCGAGACC 60.459 60.000 18.75 19.95 0.00 3.85
2186 2212 5.373812 AATCATCGGAGAAGGTATTTGGT 57.626 39.130 0.00 0.00 43.58 3.67
2258 2284 8.314751 GCCTACATGTACAAGGAGATGTATATT 58.685 37.037 15.99 0.00 36.02 1.28
2466 2492 0.179032 TGCGAGGTGTGGTGATGTTT 60.179 50.000 0.00 0.00 0.00 2.83
2573 2599 1.197430 AGGGGAGAACTGCACTGGAG 61.197 60.000 0.00 0.00 31.76 3.86
2753 2779 2.573369 GGATGCATGACAGATCTGCTT 58.427 47.619 22.83 10.54 36.84 3.91
2864 2890 3.282021 TGCAAGCAGGAATAGGAATGAC 58.718 45.455 0.00 0.00 0.00 3.06
2920 2946 3.469008 TCAACTCGAACATGACCAACT 57.531 42.857 0.00 0.00 0.00 3.16
3097 3126 1.064952 CAGTTTTGTCAACGGGGACAC 59.935 52.381 10.45 1.37 46.76 3.67
3125 3154 3.118334 ACCCTCAGAGCAAGATGATTCAG 60.118 47.826 0.00 0.00 0.00 3.02
3224 3253 0.390472 CGAGGAGAACAACAGAGCCC 60.390 60.000 0.00 0.00 0.00 5.19
3377 3406 3.154589 GGGACGGAGGATTGTTGTC 57.845 57.895 0.00 0.00 0.00 3.18
3407 3436 8.370493 ACACAAATATCTATCACCAATTCTCG 57.630 34.615 0.00 0.00 0.00 4.04
3413 3442 2.645838 ATCACCAATTCTCGGATGGG 57.354 50.000 0.84 0.00 38.58 4.00
3425 3454 2.413142 GGATGGGTCTTGCTGCTGC 61.413 63.158 8.89 8.89 40.20 5.25
3556 3586 4.621510 GCTGGTATGTCACAGATTCAGACA 60.622 45.833 9.15 8.42 45.26 3.41
3580 3610 4.934001 TCACACAGCTTCTGAATTCTGATC 59.066 41.667 19.81 10.33 35.18 2.92
3596 3626 5.762179 TCTGATCCTCCTTTGCTCTAAAA 57.238 39.130 0.00 0.00 0.00 1.52
3652 3684 8.204160 CAGTACAATCTTCAGGGAACATACATA 58.796 37.037 0.00 0.00 0.00 2.29
3729 3769 2.928334 CTGCTGGCAATGGAGATTACT 58.072 47.619 0.00 0.00 0.00 2.24
3733 3773 2.868583 CTGGCAATGGAGATTACTCACG 59.131 50.000 0.00 0.00 44.22 4.35
3747 3787 1.347707 ACTCACGGATTGGAAGAAGCA 59.652 47.619 0.00 0.00 0.00 3.91
3753 3802 1.673168 GATTGGAAGAAGCATCGCCT 58.327 50.000 5.68 0.00 0.00 5.52
3774 3823 5.229260 GCCTTTTTGACTTTTGTAACTGACG 59.771 40.000 0.00 0.00 0.00 4.35
3799 3848 7.964559 CGATGATGTGATGTACAAAGTCAATTT 59.035 33.333 0.00 0.00 43.77 1.82
3868 3932 9.620660 CACAATACATCATACATGGATCAAATG 57.379 33.333 0.00 6.17 0.00 2.32
3916 3982 6.489700 TCACATTTCTTGGCAAAGATAGAACA 59.510 34.615 3.86 0.00 42.04 3.18
3922 3988 2.025037 TGGCAAAGATAGAACAGGGCAT 60.025 45.455 0.00 0.00 0.00 4.40
3923 3989 2.360165 GGCAAAGATAGAACAGGGCATG 59.640 50.000 0.00 0.00 0.00 4.06
3924 3990 3.282021 GCAAAGATAGAACAGGGCATGA 58.718 45.455 5.99 0.00 0.00 3.07
3925 3991 3.065925 GCAAAGATAGAACAGGGCATGAC 59.934 47.826 5.99 0.00 0.00 3.06
3926 3992 4.264253 CAAAGATAGAACAGGGCATGACA 58.736 43.478 5.99 0.00 0.00 3.58
3927 3993 4.574674 AAGATAGAACAGGGCATGACAA 57.425 40.909 5.99 0.00 0.00 3.18
3928 3994 4.785346 AGATAGAACAGGGCATGACAAT 57.215 40.909 5.99 0.00 0.00 2.71
3938 4004 2.762327 GGGCATGACAATTGACAAGGAT 59.238 45.455 13.59 0.00 0.00 3.24
3978 4045 6.146510 GCAATTCATTTTGTGTCACATCACAT 59.853 34.615 6.48 0.00 45.73 3.21
3982 4049 9.932207 ATTCATTTTGTGTCACATCACATAAAT 57.068 25.926 6.48 5.92 45.73 1.40
3988 4055 6.714492 TGTGTCACATCACATAAATATTCGC 58.286 36.000 0.18 0.00 42.36 4.70
3995 4062 7.959109 CACATCACATAAATATTCGCACATAGG 59.041 37.037 0.00 0.00 0.00 2.57
4093 4170 1.307517 TGGGGGTGTGGGGATCTAC 60.308 63.158 0.00 0.00 0.00 2.59
4094 4171 2.440817 GGGGGTGTGGGGATCTACG 61.441 68.421 0.00 0.00 0.00 3.51
4095 4172 2.440817 GGGGTGTGGGGATCTACGG 61.441 68.421 0.00 0.00 0.00 4.02
4312 4391 3.691342 TCGGGCCACTCGAACAGG 61.691 66.667 4.39 0.00 33.42 4.00
4416 4495 2.278013 GTCGTCGTCGAGGATGGC 60.278 66.667 23.17 19.53 46.96 4.40
4453 4532 3.649277 CTTGGAGAGGTGGCGGTCG 62.649 68.421 0.00 0.00 0.00 4.79
4499 4578 3.860605 CGTGGATGGATCGGGCCA 61.861 66.667 4.39 0.00 43.23 5.36
4600 4679 4.712425 CGTGTGGGTCGGGTCGTC 62.712 72.222 0.00 0.00 0.00 4.20
4601 4680 4.712425 GTGTGGGTCGGGTCGTCG 62.712 72.222 0.00 0.00 0.00 5.12
4606 4685 4.729856 GGTCGGGTCGTCGGTTGG 62.730 72.222 0.00 0.00 0.00 3.77
4609 4688 4.303993 CGGGTCGTCGGTTGGGTT 62.304 66.667 0.00 0.00 0.00 4.11
4610 4689 2.357881 GGGTCGTCGGTTGGGTTC 60.358 66.667 0.00 0.00 0.00 3.62
4611 4690 2.357881 GGTCGTCGGTTGGGTTCC 60.358 66.667 0.00 0.00 0.00 3.62
4612 4691 2.739132 GTCGTCGGTTGGGTTCCT 59.261 61.111 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.801299 TGAATTATACACATTGCTTCCTTTTCA 58.199 29.630 0.00 0.00 0.00 2.69
1 2 9.807649 ATGAATTATACACATTGCTTCCTTTTC 57.192 29.630 0.00 0.00 0.00 2.29
2 3 9.590451 CATGAATTATACACATTGCTTCCTTTT 57.410 29.630 0.00 0.00 0.00 2.27
3 4 7.707893 GCATGAATTATACACATTGCTTCCTTT 59.292 33.333 0.00 0.00 0.00 3.11
4 5 7.205297 GCATGAATTATACACATTGCTTCCTT 58.795 34.615 0.00 0.00 0.00 3.36
5 6 6.513884 CGCATGAATTATACACATTGCTTCCT 60.514 38.462 0.00 0.00 0.00 3.36
6 7 5.626543 CGCATGAATTATACACATTGCTTCC 59.373 40.000 0.00 0.00 0.00 3.46
7 8 6.201517 ACGCATGAATTATACACATTGCTTC 58.798 36.000 0.00 0.00 0.00 3.86
8 9 6.038603 AGACGCATGAATTATACACATTGCTT 59.961 34.615 0.00 0.00 0.00 3.91
9 10 5.528690 AGACGCATGAATTATACACATTGCT 59.471 36.000 0.00 0.00 0.00 3.91
10 11 5.751680 AGACGCATGAATTATACACATTGC 58.248 37.500 0.00 0.00 0.00 3.56
11 12 7.408910 TCAAGACGCATGAATTATACACATTG 58.591 34.615 0.00 0.00 0.00 2.82
12 13 7.552458 TCAAGACGCATGAATTATACACATT 57.448 32.000 0.00 0.00 0.00 2.71
13 14 7.552458 TTCAAGACGCATGAATTATACACAT 57.448 32.000 0.00 0.00 32.10 3.21
14 15 6.976636 TTCAAGACGCATGAATTATACACA 57.023 33.333 0.00 0.00 32.10 3.72
15 16 7.240674 TGTTTCAAGACGCATGAATTATACAC 58.759 34.615 0.00 0.00 36.72 2.90
16 17 7.371126 TGTTTCAAGACGCATGAATTATACA 57.629 32.000 0.00 0.00 36.72 2.29
17 18 7.376866 CCATGTTTCAAGACGCATGAATTATAC 59.623 37.037 0.00 0.00 40.61 1.47
18 19 7.416817 CCATGTTTCAAGACGCATGAATTATA 58.583 34.615 0.00 0.00 40.61 0.98
19 20 6.267817 CCATGTTTCAAGACGCATGAATTAT 58.732 36.000 0.00 0.00 40.61 1.28
20 21 5.392919 CCCATGTTTCAAGACGCATGAATTA 60.393 40.000 0.00 0.00 40.61 1.40
21 22 4.487948 CCATGTTTCAAGACGCATGAATT 58.512 39.130 0.00 0.00 40.61 2.17
22 23 3.119388 CCCATGTTTCAAGACGCATGAAT 60.119 43.478 0.00 0.00 40.61 2.57
23 24 2.228582 CCCATGTTTCAAGACGCATGAA 59.771 45.455 0.00 0.00 40.61 2.57
24 25 1.811965 CCCATGTTTCAAGACGCATGA 59.188 47.619 0.00 0.00 40.61 3.07
25 26 1.733389 GCCCATGTTTCAAGACGCATG 60.733 52.381 0.00 0.00 38.61 4.06
26 27 0.527565 GCCCATGTTTCAAGACGCAT 59.472 50.000 0.00 0.00 0.00 4.73
27 28 0.537143 AGCCCATGTTTCAAGACGCA 60.537 50.000 0.00 0.00 0.00 5.24
28 29 1.398390 CTAGCCCATGTTTCAAGACGC 59.602 52.381 0.00 0.00 0.00 5.19
29 30 1.398390 GCTAGCCCATGTTTCAAGACG 59.602 52.381 2.29 0.00 0.00 4.18
30 31 2.436417 TGCTAGCCCATGTTTCAAGAC 58.564 47.619 13.29 0.00 0.00 3.01
31 32 2.819608 GTTGCTAGCCCATGTTTCAAGA 59.180 45.455 13.29 0.00 0.00 3.02
32 33 2.821969 AGTTGCTAGCCCATGTTTCAAG 59.178 45.455 13.29 0.00 0.00 3.02
33 34 2.875296 AGTTGCTAGCCCATGTTTCAA 58.125 42.857 13.29 0.00 0.00 2.69
34 35 2.584835 AGTTGCTAGCCCATGTTTCA 57.415 45.000 13.29 0.00 0.00 2.69
35 36 3.181510 CGTAAGTTGCTAGCCCATGTTTC 60.182 47.826 13.29 0.00 0.00 2.78
36 37 2.747446 CGTAAGTTGCTAGCCCATGTTT 59.253 45.455 13.29 1.09 0.00 2.83
37 38 2.356135 CGTAAGTTGCTAGCCCATGTT 58.644 47.619 13.29 1.35 0.00 2.71
38 39 1.406887 CCGTAAGTTGCTAGCCCATGT 60.407 52.381 13.29 0.00 0.00 3.21
39 40 1.134521 TCCGTAAGTTGCTAGCCCATG 60.135 52.381 13.29 0.00 0.00 3.66
40 41 1.139058 CTCCGTAAGTTGCTAGCCCAT 59.861 52.381 13.29 0.00 0.00 4.00
41 42 0.535335 CTCCGTAAGTTGCTAGCCCA 59.465 55.000 13.29 0.00 0.00 5.36
42 43 0.179081 CCTCCGTAAGTTGCTAGCCC 60.179 60.000 13.29 2.48 0.00 5.19
43 44 0.822164 TCCTCCGTAAGTTGCTAGCC 59.178 55.000 13.29 0.00 0.00 3.93
44 45 1.203994 TGTCCTCCGTAAGTTGCTAGC 59.796 52.381 8.10 8.10 0.00 3.42
45 46 3.381908 AGATGTCCTCCGTAAGTTGCTAG 59.618 47.826 0.00 0.00 0.00 3.42
46 47 3.130516 CAGATGTCCTCCGTAAGTTGCTA 59.869 47.826 0.00 0.00 0.00 3.49
47 48 2.093973 CAGATGTCCTCCGTAAGTTGCT 60.094 50.000 0.00 0.00 0.00 3.91
48 49 2.271800 CAGATGTCCTCCGTAAGTTGC 58.728 52.381 0.00 0.00 0.00 4.17
49 50 2.093973 AGCAGATGTCCTCCGTAAGTTG 60.094 50.000 0.00 0.00 0.00 3.16
50 51 2.180276 AGCAGATGTCCTCCGTAAGTT 58.820 47.619 0.00 0.00 0.00 2.66
51 52 1.853963 AGCAGATGTCCTCCGTAAGT 58.146 50.000 0.00 0.00 0.00 2.24
52 53 3.570125 TGATAGCAGATGTCCTCCGTAAG 59.430 47.826 0.00 0.00 0.00 2.34
53 54 3.562182 TGATAGCAGATGTCCTCCGTAA 58.438 45.455 0.00 0.00 0.00 3.18
54 55 3.223674 TGATAGCAGATGTCCTCCGTA 57.776 47.619 0.00 0.00 0.00 4.02
55 56 2.073252 TGATAGCAGATGTCCTCCGT 57.927 50.000 0.00 0.00 0.00 4.69
56 57 2.560105 TGATGATAGCAGATGTCCTCCG 59.440 50.000 0.00 0.00 0.00 4.63
57 58 3.323115 TGTGATGATAGCAGATGTCCTCC 59.677 47.826 0.00 0.00 0.00 4.30
58 59 4.305769 GTGTGATGATAGCAGATGTCCTC 58.694 47.826 0.00 0.00 0.00 3.71
59 60 3.070734 GGTGTGATGATAGCAGATGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
60 61 3.070734 AGGTGTGATGATAGCAGATGTCC 59.929 47.826 0.00 0.00 0.00 4.02
61 62 4.056740 CAGGTGTGATGATAGCAGATGTC 58.943 47.826 0.00 0.00 0.00 3.06
62 63 3.708121 TCAGGTGTGATGATAGCAGATGT 59.292 43.478 0.00 0.00 0.00 3.06
63 64 4.332428 TCAGGTGTGATGATAGCAGATG 57.668 45.455 0.00 0.00 0.00 2.90
64 65 5.563876 AATCAGGTGTGATGATAGCAGAT 57.436 39.130 0.00 0.00 43.04 2.90
65 66 6.268387 TGATAATCAGGTGTGATGATAGCAGA 59.732 38.462 0.00 0.00 43.04 4.26
66 67 6.461640 TGATAATCAGGTGTGATGATAGCAG 58.538 40.000 0.00 0.00 43.04 4.24
67 68 6.423776 TGATAATCAGGTGTGATGATAGCA 57.576 37.500 0.00 0.00 43.04 3.49
68 69 7.101700 TGATGATAATCAGGTGTGATGATAGC 58.898 38.462 0.00 0.00 43.04 2.97
69 70 8.529476 TCTGATGATAATCAGGTGTGATGATAG 58.471 37.037 18.50 0.00 43.04 2.08
70 71 8.426569 TCTGATGATAATCAGGTGTGATGATA 57.573 34.615 18.50 0.00 43.04 2.15
71 72 7.312415 TCTGATGATAATCAGGTGTGATGAT 57.688 36.000 18.50 0.00 43.04 2.45
72 73 6.736110 TCTGATGATAATCAGGTGTGATGA 57.264 37.500 18.50 0.00 43.04 2.92
73 74 6.764560 TGTTCTGATGATAATCAGGTGTGATG 59.235 38.462 18.50 0.00 43.04 3.07
74 75 6.892485 TGTTCTGATGATAATCAGGTGTGAT 58.108 36.000 18.50 0.00 46.01 3.06
75 76 6.298441 TGTTCTGATGATAATCAGGTGTGA 57.702 37.500 18.50 0.00 46.02 3.58
76 77 6.990341 TTGTTCTGATGATAATCAGGTGTG 57.010 37.500 18.50 0.00 46.02 3.82
77 78 7.011763 CGAATTGTTCTGATGATAATCAGGTGT 59.988 37.037 18.50 0.89 46.02 4.16
78 79 7.011763 ACGAATTGTTCTGATGATAATCAGGTG 59.988 37.037 18.50 0.00 46.02 4.00
79 80 7.050377 ACGAATTGTTCTGATGATAATCAGGT 58.950 34.615 18.50 4.70 46.02 4.00
80 81 7.488187 ACGAATTGTTCTGATGATAATCAGG 57.512 36.000 18.50 4.13 46.02 3.86
82 83 6.292328 GCGACGAATTGTTCTGATGATAATCA 60.292 38.462 0.00 0.00 0.00 2.57
83 84 6.067669 GCGACGAATTGTTCTGATGATAATC 58.932 40.000 0.00 0.00 0.00 1.75
84 85 5.523552 TGCGACGAATTGTTCTGATGATAAT 59.476 36.000 0.00 0.00 0.00 1.28
85 86 4.867608 TGCGACGAATTGTTCTGATGATAA 59.132 37.500 0.00 0.00 0.00 1.75
86 87 4.429108 TGCGACGAATTGTTCTGATGATA 58.571 39.130 0.00 0.00 0.00 2.15
87 88 3.261580 TGCGACGAATTGTTCTGATGAT 58.738 40.909 0.00 0.00 0.00 2.45
88 89 2.682836 TGCGACGAATTGTTCTGATGA 58.317 42.857 0.00 0.00 0.00 2.92
89 90 3.454042 TTGCGACGAATTGTTCTGATG 57.546 42.857 0.00 0.00 0.00 3.07
90 91 4.685169 ATTTGCGACGAATTGTTCTGAT 57.315 36.364 0.00 0.00 0.00 2.90
91 92 4.024472 TGAATTTGCGACGAATTGTTCTGA 60.024 37.500 0.00 0.00 0.00 3.27
92 93 4.218265 TGAATTTGCGACGAATTGTTCTG 58.782 39.130 0.00 0.00 0.00 3.02
93 94 4.481930 TGAATTTGCGACGAATTGTTCT 57.518 36.364 0.00 0.00 0.00 3.01
94 95 5.553692 TTTGAATTTGCGACGAATTGTTC 57.446 34.783 0.00 0.00 0.00 3.18
95 96 5.289675 TGTTTTGAATTTGCGACGAATTGTT 59.710 32.000 0.00 0.00 0.00 2.83
96 97 4.800993 TGTTTTGAATTTGCGACGAATTGT 59.199 33.333 0.00 0.00 0.00 2.71
97 98 5.308290 TGTTTTGAATTTGCGACGAATTG 57.692 34.783 0.00 0.00 0.00 2.32
98 99 6.523676 AATGTTTTGAATTTGCGACGAATT 57.476 29.167 0.00 0.00 0.00 2.17
99 100 6.523676 AAATGTTTTGAATTTGCGACGAAT 57.476 29.167 0.00 0.00 0.00 3.34
100 101 5.957910 AAATGTTTTGAATTTGCGACGAA 57.042 30.435 0.00 0.00 0.00 3.85
101 102 5.957910 AAAATGTTTTGAATTTGCGACGA 57.042 30.435 0.00 0.00 0.00 4.20
102 103 5.956645 ACAAAAATGTTTTGAATTTGCGACG 59.043 32.000 17.83 0.00 35.05 5.12
103 104 8.113675 ACTACAAAAATGTTTTGAATTTGCGAC 58.886 29.630 17.83 0.00 35.05 5.19
104 105 8.190888 ACTACAAAAATGTTTTGAATTTGCGA 57.809 26.923 17.83 0.00 35.05 5.10
111 112 9.462174 CAGCAGATACTACAAAAATGTTTTGAA 57.538 29.630 17.83 3.72 33.83 2.69
112 113 8.629158 ACAGCAGATACTACAAAAATGTTTTGA 58.371 29.630 17.83 3.84 33.83 2.69
113 114 8.801715 ACAGCAGATACTACAAAAATGTTTTG 57.198 30.769 11.02 11.02 35.64 2.44
114 115 9.248291 CAACAGCAGATACTACAAAAATGTTTT 57.752 29.630 0.00 0.00 0.00 2.43
115 116 8.629158 TCAACAGCAGATACTACAAAAATGTTT 58.371 29.630 0.00 0.00 0.00 2.83
116 117 8.165239 TCAACAGCAGATACTACAAAAATGTT 57.835 30.769 0.00 0.00 0.00 2.71
117 118 7.744087 TCAACAGCAGATACTACAAAAATGT 57.256 32.000 0.00 0.00 0.00 2.71
118 119 9.708222 GTATCAACAGCAGATACTACAAAAATG 57.292 33.333 0.00 0.00 42.76 2.32
119 120 9.448438 TGTATCAACAGCAGATACTACAAAAAT 57.552 29.630 12.78 0.00 45.06 1.82
120 121 8.840833 TGTATCAACAGCAGATACTACAAAAA 57.159 30.769 12.78 0.00 45.06 1.94
121 122 9.448438 AATGTATCAACAGCAGATACTACAAAA 57.552 29.630 12.78 0.00 45.06 2.44
122 123 9.448438 AAATGTATCAACAGCAGATACTACAAA 57.552 29.630 12.78 0.00 45.06 2.83
123 124 9.448438 AAAATGTATCAACAGCAGATACTACAA 57.552 29.630 12.78 0.00 45.06 2.41
124 125 9.448438 AAAAATGTATCAACAGCAGATACTACA 57.552 29.630 12.78 5.01 45.06 2.74
125 126 9.922305 GAAAAATGTATCAACAGCAGATACTAC 57.078 33.333 12.78 0.44 45.06 2.73
126 127 9.109393 GGAAAAATGTATCAACAGCAGATACTA 57.891 33.333 12.78 2.83 45.06 1.82
127 128 7.067494 GGGAAAAATGTATCAACAGCAGATACT 59.933 37.037 12.78 0.00 45.06 2.12
128 129 7.148086 TGGGAAAAATGTATCAACAGCAGATAC 60.148 37.037 6.43 6.43 45.05 2.24
129 130 6.889177 TGGGAAAAATGTATCAACAGCAGATA 59.111 34.615 0.00 0.00 39.49 1.98
130 131 5.716228 TGGGAAAAATGTATCAACAGCAGAT 59.284 36.000 0.00 0.00 39.49 2.90
131 132 5.076182 TGGGAAAAATGTATCAACAGCAGA 58.924 37.500 0.00 0.00 39.49 4.26
132 133 5.389859 TGGGAAAAATGTATCAACAGCAG 57.610 39.130 0.00 0.00 39.49 4.24
133 134 5.798125 TTGGGAAAAATGTATCAACAGCA 57.202 34.783 0.00 0.00 39.49 4.41
134 135 6.532657 CAGATTGGGAAAAATGTATCAACAGC 59.467 38.462 0.00 0.00 39.49 4.40
135 136 7.605449 ACAGATTGGGAAAAATGTATCAACAG 58.395 34.615 0.00 0.00 39.49 3.16
136 137 7.537596 ACAGATTGGGAAAAATGTATCAACA 57.462 32.000 0.00 0.00 40.69 3.33
137 138 9.736023 GATACAGATTGGGAAAAATGTATCAAC 57.264 33.333 14.90 0.00 44.39 3.18
138 139 8.912988 GGATACAGATTGGGAAAAATGTATCAA 58.087 33.333 19.20 0.00 45.71 2.57
139 140 8.058235 TGGATACAGATTGGGAAAAATGTATCA 58.942 33.333 19.20 7.75 45.71 2.15
140 141 8.463930 TGGATACAGATTGGGAAAAATGTATC 57.536 34.615 12.49 12.49 46.17 2.24
159 160 3.459232 TGCATCACTGTAGCTGGATAC 57.541 47.619 0.00 0.00 0.00 2.24
160 161 3.804759 GCATGCATCACTGTAGCTGGATA 60.805 47.826 14.21 0.00 0.00 2.59
161 162 2.847441 CATGCATCACTGTAGCTGGAT 58.153 47.619 0.00 0.00 0.00 3.41
162 163 1.744798 GCATGCATCACTGTAGCTGGA 60.745 52.381 14.21 0.00 0.00 3.86
163 164 0.661552 GCATGCATCACTGTAGCTGG 59.338 55.000 14.21 0.00 0.00 4.85
164 165 1.664873 AGCATGCATCACTGTAGCTG 58.335 50.000 21.98 0.00 0.00 4.24
165 166 2.014857 CAAGCATGCATCACTGTAGCT 58.985 47.619 21.98 0.00 0.00 3.32
166 167 1.741706 ACAAGCATGCATCACTGTAGC 59.258 47.619 21.98 0.00 0.00 3.58
167 168 3.688185 AGAACAAGCATGCATCACTGTAG 59.312 43.478 21.98 0.00 0.00 2.74
168 169 3.678289 AGAACAAGCATGCATCACTGTA 58.322 40.909 21.98 0.00 0.00 2.74
169 170 2.486982 GAGAACAAGCATGCATCACTGT 59.513 45.455 21.98 11.53 0.00 3.55
170 171 2.475685 CGAGAACAAGCATGCATCACTG 60.476 50.000 21.98 10.89 0.00 3.66
206 207 6.428159 ACAAGCTACTCCAGAAAATACTTGTG 59.572 38.462 0.00 0.00 42.45 3.33
213 214 7.483580 AGTAGTACAAGCTACTCCAGAAAAT 57.516 36.000 2.52 0.00 46.05 1.82
261 262 7.713507 GGGTTTTGTTTGCTTTAAACTTCCTAT 59.286 33.333 0.00 0.00 46.96 2.57
276 277 2.503765 AGGTTTGGAGGGGTTTTGTTTG 59.496 45.455 0.00 0.00 0.00 2.93
300 301 2.724174 GCGTGAAAAATACAACTGCACC 59.276 45.455 0.00 0.00 0.00 5.01
337 338 3.508793 AGGTTTTGATTGTCCAGCATCAG 59.491 43.478 0.00 0.00 0.00 2.90
370 371 2.180017 CTCGTGGCATGGCAAAGC 59.820 61.111 25.11 10.94 0.00 3.51
371 372 2.180017 GCTCGTGGCATGGCAAAG 59.820 61.111 25.11 23.14 41.35 2.77
372 373 2.282391 AGCTCGTGGCATGGCAAA 60.282 55.556 25.11 14.10 44.79 3.68
373 374 2.747460 GAGCTCGTGGCATGGCAA 60.747 61.111 25.11 8.63 44.79 4.52
374 375 3.333899 ATGAGCTCGTGGCATGGCA 62.334 57.895 19.43 19.43 44.79 4.92
375 376 2.515523 ATGAGCTCGTGGCATGGC 60.516 61.111 13.29 13.29 44.79 4.40
376 377 3.417601 CATGAGCTCGTGGCATGG 58.582 61.111 25.59 1.19 44.79 3.66
377 378 3.417601 CCATGAGCTCGTGGCATG 58.582 61.111 35.91 20.88 45.06 4.06
383 384 2.125912 GTCACGCCATGAGCTCGT 60.126 61.111 9.64 5.78 38.28 4.18
384 385 2.125952 TGTCACGCCATGAGCTCG 60.126 61.111 9.64 0.00 38.28 5.03
385 386 0.742281 ATGTGTCACGCCATGAGCTC 60.742 55.000 6.82 6.82 38.28 4.09
386 387 1.022982 CATGTGTCACGCCATGAGCT 61.023 55.000 0.00 0.00 40.70 4.09
387 388 1.426621 CATGTGTCACGCCATGAGC 59.573 57.895 0.00 0.00 40.70 4.26
388 389 0.391528 TCCATGTGTCACGCCATGAG 60.392 55.000 8.47 0.00 40.70 2.90
389 390 0.673333 GTCCATGTGTCACGCCATGA 60.673 55.000 8.47 0.00 40.70 3.07
390 391 0.954938 TGTCCATGTGTCACGCCATG 60.955 55.000 0.00 1.16 38.51 3.66
391 392 0.250684 TTGTCCATGTGTCACGCCAT 60.251 50.000 0.00 0.00 0.00 4.40
392 393 0.464554 TTTGTCCATGTGTCACGCCA 60.465 50.000 0.00 0.00 0.00 5.69
393 394 0.665835 TTTTGTCCATGTGTCACGCC 59.334 50.000 0.00 0.00 0.00 5.68
394 395 2.318578 CATTTTGTCCATGTGTCACGC 58.681 47.619 0.00 0.00 0.00 5.34
395 396 2.030893 AGCATTTTGTCCATGTGTCACG 60.031 45.455 0.00 0.00 0.00 4.35
396 397 3.648339 AGCATTTTGTCCATGTGTCAC 57.352 42.857 0.00 0.00 0.00 3.67
397 398 5.781210 TTTAGCATTTTGTCCATGTGTCA 57.219 34.783 0.00 0.00 0.00 3.58
398 399 6.389091 TGATTTAGCATTTTGTCCATGTGTC 58.611 36.000 0.00 0.00 0.00 3.67
399 400 6.343716 TGATTTAGCATTTTGTCCATGTGT 57.656 33.333 0.00 0.00 0.00 3.72
400 401 7.599621 TCTTTGATTTAGCATTTTGTCCATGTG 59.400 33.333 0.00 0.00 0.00 3.21
401 402 7.669427 TCTTTGATTTAGCATTTTGTCCATGT 58.331 30.769 0.00 0.00 0.00 3.21
402 403 8.712285 ATCTTTGATTTAGCATTTTGTCCATG 57.288 30.769 0.00 0.00 0.00 3.66
437 438 8.177154 GGGTCCACCTATTTTGACTTAAAGTCA 61.177 40.741 0.00 0.00 44.15 3.41
438 439 6.150641 GGGTCCACCTATTTTGACTTAAAGTC 59.849 42.308 0.00 0.00 40.00 3.01
439 440 6.008331 GGGTCCACCTATTTTGACTTAAAGT 58.992 40.000 0.00 0.00 35.85 2.66
440 441 6.510879 GGGTCCACCTATTTTGACTTAAAG 57.489 41.667 0.00 0.00 35.85 1.85
455 456 1.125633 TTCGGCTTATAGGGTCCACC 58.874 55.000 0.00 0.00 40.67 4.61
456 457 2.994186 TTTCGGCTTATAGGGTCCAC 57.006 50.000 0.00 0.00 0.00 4.02
457 458 3.371166 CCTTTTTCGGCTTATAGGGTCCA 60.371 47.826 0.00 0.00 0.00 4.02
458 459 3.118149 TCCTTTTTCGGCTTATAGGGTCC 60.118 47.826 0.00 0.00 0.00 4.46
459 460 4.127907 CTCCTTTTTCGGCTTATAGGGTC 58.872 47.826 0.00 0.00 0.00 4.46
460 461 3.118000 CCTCCTTTTTCGGCTTATAGGGT 60.118 47.826 0.00 0.00 0.00 4.34
461 462 3.477530 CCTCCTTTTTCGGCTTATAGGG 58.522 50.000 0.00 0.00 0.00 3.53
462 463 3.135895 TCCCTCCTTTTTCGGCTTATAGG 59.864 47.826 0.00 0.00 0.00 2.57
463 464 4.101119 TCTCCCTCCTTTTTCGGCTTATAG 59.899 45.833 0.00 0.00 0.00 1.31
464 465 4.035112 TCTCCCTCCTTTTTCGGCTTATA 58.965 43.478 0.00 0.00 0.00 0.98
465 466 2.844348 TCTCCCTCCTTTTTCGGCTTAT 59.156 45.455 0.00 0.00 0.00 1.73
466 467 2.236395 CTCTCCCTCCTTTTTCGGCTTA 59.764 50.000 0.00 0.00 0.00 3.09
467 468 1.003696 CTCTCCCTCCTTTTTCGGCTT 59.996 52.381 0.00 0.00 0.00 4.35
468 469 0.615850 CTCTCCCTCCTTTTTCGGCT 59.384 55.000 0.00 0.00 0.00 5.52
469 470 0.393132 CCTCTCCCTCCTTTTTCGGC 60.393 60.000 0.00 0.00 0.00 5.54
470 471 0.984995 ACCTCTCCCTCCTTTTTCGG 59.015 55.000 0.00 0.00 0.00 4.30
471 472 1.348036 ACACCTCTCCCTCCTTTTTCG 59.652 52.381 0.00 0.00 0.00 3.46
472 473 2.784347 CACACCTCTCCCTCCTTTTTC 58.216 52.381 0.00 0.00 0.00 2.29
473 474 1.202940 GCACACCTCTCCCTCCTTTTT 60.203 52.381 0.00 0.00 0.00 1.94
474 475 0.402121 GCACACCTCTCCCTCCTTTT 59.598 55.000 0.00 0.00 0.00 2.27
475 476 0.474660 AGCACACCTCTCCCTCCTTT 60.475 55.000 0.00 0.00 0.00 3.11
476 477 0.474660 AAGCACACCTCTCCCTCCTT 60.475 55.000 0.00 0.00 0.00 3.36
477 478 1.159664 AAGCACACCTCTCCCTCCT 59.840 57.895 0.00 0.00 0.00 3.69
478 479 1.298014 CAAGCACACCTCTCCCTCC 59.702 63.158 0.00 0.00 0.00 4.30
479 480 1.194781 TCCAAGCACACCTCTCCCTC 61.195 60.000 0.00 0.00 0.00 4.30
480 481 1.152030 TCCAAGCACACCTCTCCCT 60.152 57.895 0.00 0.00 0.00 4.20
481 482 1.298014 CTCCAAGCACACCTCTCCC 59.702 63.158 0.00 0.00 0.00 4.30
482 483 1.376553 GCTCCAAGCACACCTCTCC 60.377 63.158 0.00 0.00 41.89 3.71
483 484 1.376553 GGCTCCAAGCACACCTCTC 60.377 63.158 0.86 0.00 44.75 3.20
484 485 1.708993 TTGGCTCCAAGCACACCTCT 61.709 55.000 0.00 0.00 44.75 3.69
485 486 0.610232 ATTGGCTCCAAGCACACCTC 60.610 55.000 7.47 0.00 44.75 3.85
486 487 0.178953 AATTGGCTCCAAGCACACCT 60.179 50.000 7.47 0.00 44.75 4.00
487 488 0.244721 GAATTGGCTCCAAGCACACC 59.755 55.000 7.47 0.00 44.75 4.16
488 489 0.961019 TGAATTGGCTCCAAGCACAC 59.039 50.000 7.47 0.00 44.75 3.82
489 490 1.546923 CATGAATTGGCTCCAAGCACA 59.453 47.619 7.47 7.38 44.75 4.57
490 491 1.134907 CCATGAATTGGCTCCAAGCAC 60.135 52.381 7.47 2.40 44.75 4.40
491 492 1.187974 CCATGAATTGGCTCCAAGCA 58.812 50.000 7.47 8.17 44.75 3.91
492 493 0.462789 CCCATGAATTGGCTCCAAGC 59.537 55.000 7.47 2.96 44.97 4.01
493 494 0.462789 GCCCATGAATTGGCTCCAAG 59.537 55.000 7.47 0.00 44.97 3.61
494 495 2.594342 GCCCATGAATTGGCTCCAA 58.406 52.632 3.55 3.55 44.97 3.53
495 496 4.360643 GCCCATGAATTGGCTCCA 57.639 55.556 3.67 0.00 44.97 3.86
499 500 4.201940 GCTTTTATTTGCCCATGAATTGGC 60.202 41.667 3.93 3.93 44.97 4.52
500 501 5.187687 AGCTTTTATTTGCCCATGAATTGG 58.812 37.500 0.00 0.00 46.00 3.16
501 502 5.295045 GGAGCTTTTATTTGCCCATGAATTG 59.705 40.000 0.00 0.00 0.00 2.32
502 503 5.045724 TGGAGCTTTTATTTGCCCATGAATT 60.046 36.000 0.00 0.00 0.00 2.17
503 504 4.470664 TGGAGCTTTTATTTGCCCATGAAT 59.529 37.500 0.00 0.00 0.00 2.57
504 505 3.837146 TGGAGCTTTTATTTGCCCATGAA 59.163 39.130 0.00 0.00 0.00 2.57
505 506 3.195396 GTGGAGCTTTTATTTGCCCATGA 59.805 43.478 0.00 0.00 34.12 3.07
506 507 3.196254 AGTGGAGCTTTTATTTGCCCATG 59.804 43.478 0.00 0.00 34.12 3.66
507 508 3.444029 AGTGGAGCTTTTATTTGCCCAT 58.556 40.909 0.00 0.00 34.12 4.00
508 509 2.888212 AGTGGAGCTTTTATTTGCCCA 58.112 42.857 0.00 0.00 0.00 5.36
509 510 5.047306 ACTTTAGTGGAGCTTTTATTTGCCC 60.047 40.000 0.00 0.00 0.00 5.36
510 511 6.025749 ACTTTAGTGGAGCTTTTATTTGCC 57.974 37.500 0.00 0.00 0.00 4.52
511 512 7.946655 AAACTTTAGTGGAGCTTTTATTTGC 57.053 32.000 0.00 0.00 0.00 3.68
512 513 9.528018 TCAAAACTTTAGTGGAGCTTTTATTTG 57.472 29.630 0.00 0.00 0.00 2.32
517 518 7.867909 GCTATTCAAAACTTTAGTGGAGCTTTT 59.132 33.333 0.00 0.00 0.00 2.27
518 519 7.371159 GCTATTCAAAACTTTAGTGGAGCTTT 58.629 34.615 0.00 0.00 0.00 3.51
519 520 6.071896 GGCTATTCAAAACTTTAGTGGAGCTT 60.072 38.462 0.00 0.00 0.00 3.74
520 521 5.416013 GGCTATTCAAAACTTTAGTGGAGCT 59.584 40.000 0.00 0.00 0.00 4.09
521 522 5.183140 TGGCTATTCAAAACTTTAGTGGAGC 59.817 40.000 0.00 0.00 0.00 4.70
522 523 6.817765 TGGCTATTCAAAACTTTAGTGGAG 57.182 37.500 0.00 0.00 0.00 3.86
523 524 6.775629 AGTTGGCTATTCAAAACTTTAGTGGA 59.224 34.615 0.00 0.00 28.57 4.02
524 525 6.981722 AGTTGGCTATTCAAAACTTTAGTGG 58.018 36.000 0.00 0.00 28.57 4.00
529 530 9.271828 CCAAAATAGTTGGCTATTCAAAACTTT 57.728 29.630 1.03 0.00 44.60 2.66
530 531 8.428852 ACCAAAATAGTTGGCTATTCAAAACTT 58.571 29.630 5.02 0.00 44.60 2.66
531 532 7.962441 ACCAAAATAGTTGGCTATTCAAAACT 58.038 30.769 5.02 0.00 44.60 2.66
532 533 9.699703 TTACCAAAATAGTTGGCTATTCAAAAC 57.300 29.630 5.02 0.00 44.60 2.43
533 534 9.921637 CTTACCAAAATAGTTGGCTATTCAAAA 57.078 29.630 5.02 0.00 44.60 2.44
534 535 8.527810 CCTTACCAAAATAGTTGGCTATTCAAA 58.472 33.333 5.02 0.00 44.60 2.69
535 536 7.363443 GCCTTACCAAAATAGTTGGCTATTCAA 60.363 37.037 5.02 0.00 44.60 2.69
536 537 6.096282 GCCTTACCAAAATAGTTGGCTATTCA 59.904 38.462 5.02 0.00 44.60 2.57
537 538 6.096282 TGCCTTACCAAAATAGTTGGCTATTC 59.904 38.462 5.02 0.00 44.60 1.75
538 539 5.955355 TGCCTTACCAAAATAGTTGGCTATT 59.045 36.000 5.02 0.00 46.62 1.73
539 540 5.515106 TGCCTTACCAAAATAGTTGGCTAT 58.485 37.500 5.02 0.00 43.23 2.97
540 541 4.924625 TGCCTTACCAAAATAGTTGGCTA 58.075 39.130 5.02 0.00 43.23 3.93
541 542 3.773560 TGCCTTACCAAAATAGTTGGCT 58.226 40.909 5.02 0.00 43.23 4.75
542 543 4.242475 GTTGCCTTACCAAAATAGTTGGC 58.758 43.478 5.02 0.00 43.23 4.52
543 544 4.617298 CGGTTGCCTTACCAAAATAGTTGG 60.617 45.833 3.55 3.55 44.91 3.77
544 545 4.022676 ACGGTTGCCTTACCAAAATAGTTG 60.023 41.667 0.00 0.00 38.12 3.16
545 546 4.146564 ACGGTTGCCTTACCAAAATAGTT 58.853 39.130 0.00 0.00 38.12 2.24
546 547 3.758425 ACGGTTGCCTTACCAAAATAGT 58.242 40.909 0.00 0.00 38.12 2.12
547 548 4.334481 CCTACGGTTGCCTTACCAAAATAG 59.666 45.833 0.00 0.00 38.12 1.73
548 549 4.263435 CCTACGGTTGCCTTACCAAAATA 58.737 43.478 0.00 0.00 38.12 1.40
549 550 3.086282 CCTACGGTTGCCTTACCAAAAT 58.914 45.455 0.00 0.00 38.12 1.82
550 551 2.506444 CCTACGGTTGCCTTACCAAAA 58.494 47.619 0.00 0.00 38.12 2.44
551 552 1.883209 GCCTACGGTTGCCTTACCAAA 60.883 52.381 0.00 0.00 38.12 3.28
552 553 0.321830 GCCTACGGTTGCCTTACCAA 60.322 55.000 0.00 0.00 38.12 3.67
553 554 1.196104 AGCCTACGGTTGCCTTACCA 61.196 55.000 0.00 0.00 38.12 3.25
554 555 0.826062 TAGCCTACGGTTGCCTTACC 59.174 55.000 0.00 0.00 34.72 2.85
555 556 2.678471 TTAGCCTACGGTTGCCTTAC 57.322 50.000 0.00 0.00 0.00 2.34
556 557 3.337358 GTTTTAGCCTACGGTTGCCTTA 58.663 45.455 0.00 0.00 0.00 2.69
557 558 2.156917 GTTTTAGCCTACGGTTGCCTT 58.843 47.619 0.00 0.00 0.00 4.35
558 559 1.612462 GGTTTTAGCCTACGGTTGCCT 60.612 52.381 0.00 0.00 0.00 4.75
559 560 0.806868 GGTTTTAGCCTACGGTTGCC 59.193 55.000 0.00 0.00 0.00 4.52
560 561 1.525941 TGGTTTTAGCCTACGGTTGC 58.474 50.000 0.00 0.00 0.00 4.17
561 562 2.227149 GGTTGGTTTTAGCCTACGGTTG 59.773 50.000 0.00 0.00 35.58 3.77
562 563 2.158638 TGGTTGGTTTTAGCCTACGGTT 60.159 45.455 0.00 0.00 35.58 4.44
563 564 1.420891 TGGTTGGTTTTAGCCTACGGT 59.579 47.619 0.00 0.00 35.58 4.83
564 565 2.188062 TGGTTGGTTTTAGCCTACGG 57.812 50.000 0.00 0.00 35.58 4.02
565 566 4.514066 GGATATGGTTGGTTTTAGCCTACG 59.486 45.833 0.00 0.00 35.58 3.51
566 567 5.298527 GTGGATATGGTTGGTTTTAGCCTAC 59.701 44.000 0.00 0.00 34.32 3.18
588 589 7.970061 CCAGTGTATTTTATCCTCAACAATGTG 59.030 37.037 0.00 0.00 32.69 3.21
590 591 8.279970 TCCAGTGTATTTTATCCTCAACAATG 57.720 34.615 0.00 0.00 33.93 2.82
613 614 6.354130 TCACAACTAAGCTTATGGGTTATCC 58.646 40.000 6.64 0.00 37.29 2.59
614 615 8.451908 AATCACAACTAAGCTTATGGGTTATC 57.548 34.615 6.64 0.00 37.29 1.75
624 625 6.920210 GCTTTTTCTGAATCACAACTAAGCTT 59.080 34.615 3.48 3.48 0.00 3.74
629 630 5.136828 TGGGCTTTTTCTGAATCACAACTA 58.863 37.500 0.00 0.00 0.00 2.24
632 633 4.648762 TCTTGGGCTTTTTCTGAATCACAA 59.351 37.500 0.00 0.00 0.00 3.33
686 688 7.396540 AATTAGTCGATGAGGCAAATTTCTT 57.603 32.000 0.00 0.00 0.00 2.52
688 690 8.142994 TCTAATTAGTCGATGAGGCAAATTTC 57.857 34.615 12.19 0.00 0.00 2.17
689 691 8.682936 ATCTAATTAGTCGATGAGGCAAATTT 57.317 30.769 12.19 0.00 0.00 1.82
690 692 9.429359 CTATCTAATTAGTCGATGAGGCAAATT 57.571 33.333 12.19 0.00 0.00 1.82
691 693 8.807118 TCTATCTAATTAGTCGATGAGGCAAAT 58.193 33.333 12.19 0.00 0.00 2.32
716 718 9.063615 TCTCCTAATTAACCAACAACTCTTTTC 57.936 33.333 0.00 0.00 0.00 2.29
725 727 9.308000 ACATGATTTTCTCCTAATTAACCAACA 57.692 29.630 0.00 0.00 0.00 3.33
749 752 9.562583 GCTCGGTTAATTATGACAATTTTTACA 57.437 29.630 0.00 0.00 0.00 2.41
751 754 7.911205 CCGCTCGGTTAATTATGACAATTTTTA 59.089 33.333 0.00 0.00 0.00 1.52
752 755 6.750039 CCGCTCGGTTAATTATGACAATTTTT 59.250 34.615 0.00 0.00 0.00 1.94
772 775 3.808174 GTGGGATATCTTGTTTACCGCTC 59.192 47.826 2.05 0.00 0.00 5.03
778 781 5.487488 AGGTGTGAGTGGGATATCTTGTTTA 59.513 40.000 2.05 0.00 0.00 2.01
784 787 4.099573 CGTAAAGGTGTGAGTGGGATATCT 59.900 45.833 2.05 0.00 0.00 1.98
791 794 3.243771 ACTTCTCGTAAAGGTGTGAGTGG 60.244 47.826 4.93 0.00 0.00 4.00
800 803 2.096069 TCGACGTGACTTCTCGTAAAGG 60.096 50.000 6.34 0.00 44.60 3.11
809 812 2.243407 GTGATGTCTCGACGTGACTTC 58.757 52.381 26.35 26.35 38.37 3.01
810 813 1.607148 TGTGATGTCTCGACGTGACTT 59.393 47.619 25.22 20.51 35.81 3.01
813 816 2.986479 CAAATGTGATGTCTCGACGTGA 59.014 45.455 0.00 0.00 0.00 4.35
814 817 2.731451 ACAAATGTGATGTCTCGACGTG 59.269 45.455 0.00 0.00 0.00 4.49
818 823 5.385509 TGACTACAAATGTGATGTCTCGA 57.614 39.130 11.93 0.00 34.26 4.04
828 833 7.192852 AGATGAGGAAGATGACTACAAATGT 57.807 36.000 0.00 0.00 0.00 2.71
849 854 2.758736 AGTCGCTTGCTCAAGAAGAT 57.241 45.000 13.33 1.22 40.79 2.40
876 881 1.896660 GGCTTCTTTGTCCGTGGCA 60.897 57.895 0.00 0.00 0.00 4.92
881 886 3.708563 TTTCTTTGGCTTCTTTGTCCG 57.291 42.857 0.00 0.00 0.00 4.79
885 890 6.218019 TCACATCATTTCTTTGGCTTCTTTG 58.782 36.000 0.00 0.00 0.00 2.77
910 915 0.827507 ACCCAAGCTTCGGTTTGCAT 60.828 50.000 10.30 0.00 35.31 3.96
918 923 0.593128 CCAACTTCACCCAAGCTTCG 59.407 55.000 0.00 0.00 35.17 3.79
940 953 4.556699 GCGCTGTGAAGTGAAAATTACCTT 60.557 41.667 0.00 0.00 0.00 3.50
1002 1025 2.218603 GAAGCAACGGGACAAGAAAGA 58.781 47.619 0.00 0.00 0.00 2.52
1003 1026 1.069906 CGAAGCAACGGGACAAGAAAG 60.070 52.381 0.00 0.00 0.00 2.62
1004 1027 0.941542 CGAAGCAACGGGACAAGAAA 59.058 50.000 0.00 0.00 0.00 2.52
1005 1028 2.612200 CGAAGCAACGGGACAAGAA 58.388 52.632 0.00 0.00 0.00 2.52
1204 1230 2.432628 GGACGAGCGACTTGGTGG 60.433 66.667 0.00 0.00 0.00 4.61
1286 1312 2.355363 TTGTGGAGGAACGCGTCG 60.355 61.111 14.44 0.00 0.00 5.12
1566 1592 0.389948 GGCATTCCGTCGAACACTCT 60.390 55.000 0.00 0.00 0.00 3.24
1568 1594 4.278956 GGCATTCCGTCGAACACT 57.721 55.556 0.00 0.00 0.00 3.55
1704 1730 2.734591 GGCTATGATCCCGACGCA 59.265 61.111 0.00 0.00 0.00 5.24
1772 1798 2.609825 CCTGATCACATAGGCGTGC 58.390 57.895 0.00 0.00 36.80 5.34
1781 1807 1.221566 CATCCCGTGCCTGATCACA 59.778 57.895 0.00 0.00 36.80 3.58
1893 1919 0.390340 CATGTCACCACGGTCCTCAG 60.390 60.000 0.00 0.00 0.00 3.35
1937 1963 4.367023 TCGGGCCGTTCGTTCAGG 62.367 66.667 27.32 0.00 0.00 3.86
2012 2038 1.946768 GCCAGCAAATTGATAGCGGTA 59.053 47.619 0.00 0.00 0.00 4.02
2057 2083 3.003480 GTGAACACTCCTTCCATACAGC 58.997 50.000 0.00 0.00 0.00 4.40
2078 2104 8.216884 AGAAACTGTCTTCTGGTTATGTAACCG 61.217 40.741 15.20 10.85 45.79 4.44
2111 2137 4.357947 GCGGTCTCGAGCACCACA 62.358 66.667 24.42 0.72 39.00 4.17
2126 2152 0.248094 TGTACATCTCGAGAAGCGCG 60.248 55.000 20.91 0.00 40.61 6.86
2186 2212 3.554960 CCAGAGTTTTGGTCGTCATCTGA 60.555 47.826 0.00 0.00 35.78 3.27
2231 2257 3.181475 ACATCTCCTTGTACATGTAGGCG 60.181 47.826 5.62 1.03 0.00 5.52
2258 2284 3.057969 AGGAACAATGTGATCGCTTCA 57.942 42.857 7.94 0.00 0.00 3.02
2466 2492 5.652452 TGTCAAATATCTCTCTCGAGGACAA 59.348 40.000 13.56 0.00 37.86 3.18
2573 2599 4.582701 ACATCTCATCTCGGAGAACATC 57.417 45.455 12.40 0.00 46.28 3.06
2753 2779 0.616395 TAAGATCACCTGCCCGACCA 60.616 55.000 0.00 0.00 0.00 4.02
2864 2890 4.269603 GCTGCGTATTCTGCTATATCCATG 59.730 45.833 0.00 0.00 0.00 3.66
2920 2946 2.687425 CAACCTGTGTTGTCATGTTCCA 59.313 45.455 0.00 0.00 45.51 3.53
2975 3001 0.747255 CGACATCGTTCCATCTCCCT 59.253 55.000 0.00 0.00 34.11 4.20
3097 3126 3.573772 TTGCTCTGAGGGTGCGTCG 62.574 63.158 6.83 0.00 37.26 5.12
3125 3154 3.541632 TGACAGAAAGTTGGACACTTCC 58.458 45.455 0.00 0.00 45.77 3.46
3176 3205 6.120905 CAGAGAGGTTGGATCAGATTGATTT 58.879 40.000 0.00 0.00 37.20 2.17
3224 3253 2.161012 CAGCCTCACACTATGCTTGTTG 59.839 50.000 0.00 0.00 30.08 3.33
3359 3388 0.739813 CGACAACAATCCTCCGTCCC 60.740 60.000 0.00 0.00 0.00 4.46
3377 3406 3.428870 GGTGATAGATATTTGTGTCGCCG 59.571 47.826 0.00 0.00 29.44 6.46
3407 3436 2.413142 GCAGCAGCAAGACCCATCC 61.413 63.158 0.00 0.00 41.58 3.51
3413 3442 2.666190 TCACCGCAGCAGCAAGAC 60.666 61.111 0.82 0.00 42.27 3.01
3425 3454 1.611977 TCTGTTCACCAGTAGTCACCG 59.388 52.381 0.00 0.00 42.19 4.94
3556 3586 4.903054 TCAGAATTCAGAAGCTGTGTGAT 58.097 39.130 8.44 0.00 32.61 3.06
3596 3626 5.052481 GCACCAGAAATTCAGAAGCTTTTT 58.948 37.500 0.00 0.00 0.00 1.94
3616 3648 0.804989 GATTGTACTGGTGCTGGCAC 59.195 55.000 16.33 16.33 45.49 5.01
3652 3684 4.098654 CGAGTACATGAGAGTTGATCCCTT 59.901 45.833 0.00 0.00 0.00 3.95
3729 3769 2.632377 GATGCTTCTTCCAATCCGTGA 58.368 47.619 0.00 0.00 0.00 4.35
3733 3773 0.665298 GGCGATGCTTCTTCCAATCC 59.335 55.000 0.00 0.00 0.00 3.01
3747 3787 5.977129 CAGTTACAAAAGTCAAAAAGGCGAT 59.023 36.000 0.00 0.00 0.00 4.58
3753 3802 7.753659 TCATCGTCAGTTACAAAAGTCAAAAA 58.246 30.769 0.00 0.00 0.00 1.94
3774 3823 9.630098 AAAATTGACTTTGTACATCACATCATC 57.370 29.630 0.00 0.00 36.90 2.92
3868 3932 5.299949 ACAGGAAATCAACTTCCATTTTGC 58.700 37.500 5.24 0.00 46.38 3.68
3916 3982 2.173519 CCTTGTCAATTGTCATGCCCT 58.826 47.619 6.21 0.00 0.00 5.19
3922 3988 5.244402 AGCATTTCATCCTTGTCAATTGTCA 59.756 36.000 5.13 2.96 0.00 3.58
3923 3989 5.717119 AGCATTTCATCCTTGTCAATTGTC 58.283 37.500 5.13 0.00 0.00 3.18
3924 3990 5.733620 AGCATTTCATCCTTGTCAATTGT 57.266 34.783 5.13 0.00 0.00 2.71
3925 3991 6.160684 TGAAGCATTTCATCCTTGTCAATTG 58.839 36.000 0.00 0.00 38.37 2.32
3926 3992 6.349243 TGAAGCATTTCATCCTTGTCAATT 57.651 33.333 0.00 0.00 38.37 2.32
3927 3993 5.988310 TGAAGCATTTCATCCTTGTCAAT 57.012 34.783 0.00 0.00 38.37 2.57
3969 4035 7.959109 CCTATGTGCGAATATTTATGTGATGTG 59.041 37.037 0.00 0.00 0.00 3.21
3982 4049 7.201750 GGTTGTAAAATTCCCTATGTGCGAATA 60.202 37.037 0.00 0.00 0.00 1.75
3983 4050 6.405397 GGTTGTAAAATTCCCTATGTGCGAAT 60.405 38.462 0.00 0.00 0.00 3.34
4321 4400 3.845259 TACCGGGACATCCTGCGC 61.845 66.667 6.32 0.00 41.13 6.09
4429 4508 1.994463 CCACCTCTCCAAGAAGGGG 59.006 63.158 0.00 0.00 43.17 4.79
4430 4509 1.301293 GCCACCTCTCCAAGAAGGG 59.699 63.158 0.00 0.00 38.24 3.95
4431 4510 1.078848 CGCCACCTCTCCAAGAAGG 60.079 63.158 0.00 0.00 39.47 3.46
4453 4532 1.064946 CACCATCGACGAGCTCCTC 59.935 63.158 8.47 5.32 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.