Multiple sequence alignment - TraesCS5A01G504100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G504100 chr5A 100.000 6525 0 0 1 6525 669981996 669988520 0.000000e+00 12050.0
1 TraesCS5A01G504100 chr5A 96.035 227 5 1 5861 6087 666235394 666235616 3.720000e-97 366.0
2 TraesCS5A01G504100 chr5A 79.937 319 36 14 201 497 627021321 627021633 6.630000e-50 209.0
3 TraesCS5A01G504100 chr4B 93.801 2839 105 29 1 2806 624522635 624525435 0.000000e+00 4202.0
4 TraesCS5A01G504100 chr4B 96.531 2277 63 11 3599 5863 624527573 624529845 0.000000e+00 3753.0
5 TraesCS5A01G504100 chr4B 95.270 444 20 1 6082 6525 624529843 624530285 0.000000e+00 702.0
6 TraesCS5A01G504100 chr4B 97.277 404 9 2 2857 3259 624525434 624525836 0.000000e+00 684.0
7 TraesCS5A01G504100 chr4B 95.280 339 9 2 3260 3598 624527168 624527499 1.250000e-146 531.0
8 TraesCS5A01G504100 chr4B 93.478 230 9 3 5857 6084 68116554 68116779 2.910000e-88 337.0
9 TraesCS5A01G504100 chr4B 77.892 389 78 8 5147 5531 623787265 623787649 1.090000e-57 235.0
10 TraesCS5A01G504100 chr4B 77.041 392 80 10 5147 5533 623646474 623646860 3.960000e-52 217.0
11 TraesCS5A01G504100 chr6B 93.860 228 9 2 5861 6087 558656071 558656294 8.100000e-89 339.0
12 TraesCS5A01G504100 chr3A 93.506 231 10 2 5855 6084 535225515 535225741 8.100000e-89 339.0
13 TraesCS5A01G504100 chr2B 94.196 224 9 1 5861 6084 763962244 763962025 8.100000e-89 339.0
14 TraesCS5A01G504100 chr2B 79.937 319 36 14 201 497 281928108 281928420 6.630000e-50 209.0
15 TraesCS5A01G504100 chr2B 79.937 319 36 15 201 497 740773313 740773625 6.630000e-50 209.0
16 TraesCS5A01G504100 chr2A 94.196 224 9 1 5861 6084 258346966 258346747 8.100000e-89 339.0
17 TraesCS5A01G504100 chr1B 94.170 223 9 1 5862 6084 484209387 484209169 2.910000e-88 337.0
18 TraesCS5A01G504100 chr1B 93.421 228 11 1 5861 6088 323632431 323632654 1.050000e-87 335.0
19 TraesCS5A01G504100 chr7B 90.763 249 18 2 5848 6095 255064249 255064005 1.750000e-85 327.0
20 TraesCS5A01G504100 chr7B 85.259 251 28 6 272 519 746617517 746617761 3.910000e-62 250.0
21 TraesCS5A01G504100 chr7B 78.261 391 77 6 5147 5533 582938398 582938784 1.820000e-60 244.0
22 TraesCS5A01G504100 chr7B 94.444 36 2 0 1428 1463 535519828 535519863 1.000000e-03 56.5
23 TraesCS5A01G504100 chr7D 77.806 392 77 9 5147 5533 539950682 539951068 3.930000e-57 233.0
24 TraesCS5A01G504100 chr7D 83.550 231 32 5 272 501 40649641 40649866 1.840000e-50 211.0
25 TraesCS5A01G504100 chr4A 80.564 319 34 14 201 497 618576138 618576450 3.060000e-53 220.0
26 TraesCS5A01G504100 chr4A 79.937 319 36 14 201 497 2561154 2561466 6.630000e-50 209.0
27 TraesCS5A01G504100 chr6A 83.043 230 33 5 272 500 593460995 593460771 3.080000e-48 204.0
28 TraesCS5A01G504100 chr3B 77.885 312 56 11 1433 1734 812944388 812944080 1.450000e-41 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G504100 chr5A 669981996 669988520 6524 False 12050.0 12050 100.0000 1 6525 1 chr5A.!!$F3 6524
1 TraesCS5A01G504100 chr4B 624522635 624530285 7650 False 1974.4 4202 95.6318 1 6525 5 chr4B.!!$F4 6524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 661 1.686355 TTTCTTGGCGACCAATGTGT 58.314 45.000 10.99 0.0 43.07 3.72 F
1166 1169 0.178903 TGCTGTAAGGAGGGACCAGT 60.179 55.000 0.00 0.0 42.04 4.00 F
2337 2352 0.103208 ACATCGGATCTCTTCGTGGC 59.897 55.000 0.00 0.0 0.00 5.01 F
2828 2862 0.035820 GGACAATGTGACGGCCCTTA 60.036 55.000 0.00 0.0 0.00 2.69 F
2834 2868 1.575419 TGTGACGGCCCTTAATACCT 58.425 50.000 0.00 0.0 0.00 3.08 F
2835 2869 1.910671 TGTGACGGCCCTTAATACCTT 59.089 47.619 0.00 0.0 0.00 3.50 F
4611 6061 1.679139 CTGTCCTCAACCTTTGTGCA 58.321 50.000 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2179 2194 0.110486 GGGGGAGCTTGACAAAGACA 59.890 55.000 0.00 0.00 35.19 3.41 R
2809 2843 0.035820 TAAGGGCCGTCACATTGTCC 60.036 55.000 0.00 0.00 0.00 4.02 R
4074 5513 0.321210 CCGTGGTGACATGTAAGCCA 60.321 55.000 9.95 10.19 46.26 4.75 R
4596 6046 1.466167 CTCGATGCACAAAGGTTGAGG 59.534 52.381 0.00 0.00 0.00 3.86 R
4603 6053 1.904144 CAATGCCTCGATGCACAAAG 58.096 50.000 17.87 4.55 45.48 2.77 R
4632 6082 2.428890 TGTAAAACCAAGGGTGCAAGTG 59.571 45.455 0.00 0.00 35.34 3.16 R
5891 7341 0.304098 CCTCGACCTAGAACTACGCG 59.696 60.000 3.53 3.53 0.00 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 3.391296 AGGTACTTGTGACTGGATGTGTT 59.609 43.478 0.00 0.00 27.25 3.32
166 167 5.359756 GGGATGGCATTGTAAAAATCTTCC 58.640 41.667 0.00 0.00 0.00 3.46
175 176 8.279103 GCATTGTAAAAATCTTCCGATCTCTAG 58.721 37.037 0.00 0.00 0.00 2.43
212 213 1.688187 GTCGCCTTCCCTCCCCTTA 60.688 63.158 0.00 0.00 0.00 2.69
233 234 7.180229 CCCTTATGGTTTCCTATTGGTTTTTCT 59.820 37.037 0.00 0.00 34.23 2.52
249 250 2.773993 TTCTGGTAACCCCAATCGAC 57.226 50.000 0.00 0.00 44.65 4.20
272 274 3.496507 GCCGCACAAATAAAAACCAACAT 59.503 39.130 0.00 0.00 0.00 2.71
276 278 7.066505 CCGCACAAATAAAAACCAACATAAAC 58.933 34.615 0.00 0.00 0.00 2.01
277 279 7.254455 CCGCACAAATAAAAACCAACATAAACA 60.254 33.333 0.00 0.00 0.00 2.83
300 302 8.786826 ACATAAACCAAATCGATACTTTCTCA 57.213 30.769 0.00 0.00 0.00 3.27
335 337 8.909923 TCATGCATTAACTCAATCAAATCAGAT 58.090 29.630 0.00 0.00 0.00 2.90
336 338 9.181805 CATGCATTAACTCAATCAAATCAGATC 57.818 33.333 0.00 0.00 0.00 2.75
455 457 6.069994 TGGTGGATGTAAGGTATATGTCGTA 58.930 40.000 0.00 0.00 0.00 3.43
556 558 8.824159 TGTTTTTATTGGGTCACATATTGTTG 57.176 30.769 0.00 0.00 0.00 3.33
557 559 8.424918 TGTTTTTATTGGGTCACATATTGTTGT 58.575 29.630 0.00 0.00 0.00 3.32
558 560 9.267084 GTTTTTATTGGGTCACATATTGTTGTT 57.733 29.630 0.00 0.00 0.00 2.83
559 561 9.482627 TTTTTATTGGGTCACATATTGTTGTTC 57.517 29.630 0.00 0.00 0.00 3.18
560 562 4.757799 TTGGGTCACATATTGTTGTTCG 57.242 40.909 0.00 0.00 0.00 3.95
627 630 5.880332 CGGTCCCCAATATTACAATGATAGG 59.120 44.000 0.00 0.00 0.00 2.57
650 653 5.220796 GGGTATCACTTTATTTCTTGGCGAC 60.221 44.000 0.00 0.00 0.00 5.19
658 661 1.686355 TTTCTTGGCGACCAATGTGT 58.314 45.000 10.99 0.00 43.07 3.72
668 671 4.034048 GGCGACCAATGTGTACTCATTTAG 59.966 45.833 18.14 15.00 36.10 1.85
745 748 9.282569 AGTTGGCTGCAATTTTAAAATATTTCA 57.717 25.926 13.68 8.45 0.00 2.69
753 756 9.394767 GCAATTTTAAAATATTTCACCCCATCT 57.605 29.630 13.68 0.00 0.00 2.90
1050 1053 6.323197 GCAATTGCTCTATGTTTACTTTGC 57.677 37.500 23.21 0.00 38.21 3.68
1064 1067 6.071447 TGTTTACTTTGCCATGCACTTCATAT 60.071 34.615 0.00 0.00 38.71 1.78
1128 1131 8.474006 TCATGTCATGTGTTGTATTACTGTAC 57.526 34.615 12.54 0.00 0.00 2.90
1166 1169 0.178903 TGCTGTAAGGAGGGACCAGT 60.179 55.000 0.00 0.00 42.04 4.00
1227 1230 9.178758 GTTGGATTGTATAAAACTCAAGGAGAT 57.821 33.333 0.00 0.00 33.32 2.75
1239 1242 2.171003 CAAGGAGATGGTTTTGGGGTC 58.829 52.381 0.00 0.00 0.00 4.46
1269 1272 1.553690 TTGAGCTAGGGAGTGGTGCC 61.554 60.000 0.00 0.00 0.00 5.01
1340 1343 0.743097 GATGTTGCTTGGCTCCCATC 59.257 55.000 0.00 0.00 31.53 3.51
1436 1442 5.392057 GGGATTTCGAAAATGGAACTCAGTC 60.392 44.000 15.66 3.04 0.00 3.51
1465 1471 5.197451 AGATCTAACCAAGTCTCAGTCGAT 58.803 41.667 0.00 0.00 0.00 3.59
1468 1474 5.010933 TCTAACCAAGTCTCAGTCGATCTT 58.989 41.667 0.00 0.00 0.00 2.40
1486 1492 5.961843 CGATCTTGTAGCATTTTGTCACATC 59.038 40.000 0.00 0.00 0.00 3.06
1487 1493 5.281693 TCTTGTAGCATTTTGTCACATCG 57.718 39.130 0.00 0.00 0.00 3.84
1490 1496 5.029650 TGTAGCATTTTGTCACATCGTTC 57.970 39.130 0.00 0.00 0.00 3.95
1528 1534 0.730494 GTTTGCAGCATCGGTCTTGC 60.730 55.000 0.00 0.00 40.45 4.01
1550 1556 1.373570 GTTGTAGCATGTCAGCCCTC 58.626 55.000 0.00 0.00 34.23 4.30
1553 1559 0.744874 GTAGCATGTCAGCCCTCGTA 59.255 55.000 0.00 0.00 34.23 3.43
1554 1560 1.341531 GTAGCATGTCAGCCCTCGTAT 59.658 52.381 0.00 0.00 34.23 3.06
1555 1561 0.390860 AGCATGTCAGCCCTCGTATC 59.609 55.000 0.00 0.00 34.23 2.24
1577 1584 2.208431 GTAGCATGTCATCTCACTGGC 58.792 52.381 0.00 0.00 0.00 4.85
1604 1611 2.754946 TCCTCCATTGACGGTTGTAC 57.245 50.000 0.00 0.00 0.00 2.90
1621 1628 6.347402 CGGTTGTACCATTTTAGTCAGAACAG 60.347 42.308 0.00 0.00 38.47 3.16
1623 1630 7.307811 GGTTGTACCATTTTAGTCAGAACAGTC 60.308 40.741 0.00 0.00 38.42 3.51
1670 1677 5.612276 GCAGTATTGTTGCAACATTTTTCGG 60.612 40.000 31.48 19.72 41.17 4.30
1750 1762 2.088423 AGACGGCTGACTTCTAGACAG 58.912 52.381 0.00 4.80 40.19 3.51
1754 1766 1.478916 GGCTGACTTCTAGACAGACCC 59.521 57.143 11.90 2.49 39.58 4.46
1757 1769 3.259625 GCTGACTTCTAGACAGACCCTTT 59.740 47.826 11.90 0.00 39.74 3.11
1758 1770 4.619628 GCTGACTTCTAGACAGACCCTTTC 60.620 50.000 11.90 0.00 39.74 2.62
1808 1820 6.614694 AGGAAAACTTGGTTTTGGTTAGTT 57.385 33.333 12.22 0.00 44.33 2.24
1843 1855 9.449719 AAATAAGTGTACCTAATTCCTTGTCTG 57.550 33.333 0.00 0.00 0.00 3.51
1898 1910 2.275380 GGTTGGGCCGCACTGAAAT 61.275 57.895 0.00 0.00 0.00 2.17
1909 1921 5.082059 GCCGCACTGAAATATCATATTTCG 58.918 41.667 20.50 17.47 40.02 3.46
2012 2026 1.902508 CCCTTCTAGCACTTCCTGTCA 59.097 52.381 0.00 0.00 0.00 3.58
2037 2051 1.026718 CCACCTCGAGTTTCCATGCC 61.027 60.000 12.31 0.00 0.00 4.40
2043 2057 1.699656 CGAGTTTCCATGCCTGAGCG 61.700 60.000 0.00 0.00 44.31 5.03
2063 2077 2.030562 CTCGTGGGCTTCGTTGGT 59.969 61.111 2.55 0.00 0.00 3.67
2074 2088 0.249699 TTCGTTGGTGCATCTCGTGT 60.250 50.000 12.92 0.00 0.00 4.49
2098 2112 1.982958 AGGTCGTAAAATGGAGGTGGT 59.017 47.619 0.00 0.00 0.00 4.16
2109 2123 3.377253 TGGAGGTGGTCTAACGAGTAT 57.623 47.619 0.00 0.00 0.00 2.12
2110 2124 4.508551 TGGAGGTGGTCTAACGAGTATA 57.491 45.455 0.00 0.00 0.00 1.47
2111 2125 4.458397 TGGAGGTGGTCTAACGAGTATAG 58.542 47.826 0.00 0.00 0.00 1.31
2112 2126 3.252944 GGAGGTGGTCTAACGAGTATAGC 59.747 52.174 0.00 0.00 0.00 2.97
2113 2127 3.881688 GAGGTGGTCTAACGAGTATAGCA 59.118 47.826 0.00 0.00 0.00 3.49
2114 2128 3.884091 AGGTGGTCTAACGAGTATAGCAG 59.116 47.826 0.00 0.00 0.00 4.24
2115 2129 3.550436 GGTGGTCTAACGAGTATAGCAGC 60.550 52.174 0.00 0.00 30.75 5.25
2116 2130 3.066342 GTGGTCTAACGAGTATAGCAGCA 59.934 47.826 0.00 0.00 0.00 4.41
2125 2140 1.973515 AGTATAGCAGCATAGCAGCCA 59.026 47.619 2.68 0.00 41.98 4.75
2159 2174 0.445436 CTTCACAAGCGATGGTGCTC 59.555 55.000 2.49 0.00 46.60 4.26
2160 2175 0.955428 TTCACAAGCGATGGTGCTCC 60.955 55.000 2.49 0.00 46.60 4.70
2161 2176 1.376424 CACAAGCGATGGTGCTCCT 60.376 57.895 6.34 0.00 46.60 3.69
2162 2177 1.376424 ACAAGCGATGGTGCTCCTG 60.376 57.895 6.34 0.00 46.60 3.86
2163 2178 2.437359 AAGCGATGGTGCTCCTGC 60.437 61.111 6.34 7.65 46.60 4.85
2164 2179 4.827087 AGCGATGGTGCTCCTGCG 62.827 66.667 6.34 10.41 42.95 5.18
2179 2194 3.673484 GCGCACTGCCCACACAAT 61.673 61.111 0.30 0.00 37.76 2.71
2196 2211 2.887152 ACAATGTCTTTGTCAAGCTCCC 59.113 45.455 0.00 0.00 45.55 4.30
2214 2229 1.595382 CCCGTCATCGAAGATGCCC 60.595 63.158 4.33 0.00 45.12 5.36
2222 2237 1.153369 CGAAGATGCCCACGGTGAT 60.153 57.895 10.28 0.00 0.00 3.06
2223 2238 1.431488 CGAAGATGCCCACGGTGATG 61.431 60.000 10.28 1.35 0.00 3.07
2224 2239 1.077501 AAGATGCCCACGGTGATGG 60.078 57.895 10.28 4.30 39.71 3.51
2334 2349 3.634568 GATGACATCGGATCTCTTCGT 57.365 47.619 0.00 0.00 0.00 3.85
2335 2350 2.851805 TGACATCGGATCTCTTCGTG 57.148 50.000 0.00 0.00 0.00 4.35
2336 2351 1.405463 TGACATCGGATCTCTTCGTGG 59.595 52.381 0.00 0.00 0.00 4.94
2337 2352 0.103208 ACATCGGATCTCTTCGTGGC 59.897 55.000 0.00 0.00 0.00 5.01
2347 2362 2.357034 TTCGTGGCTTCGTGCTCC 60.357 61.111 3.58 0.00 42.39 4.70
2352 2367 2.435059 GGCTTCGTGCTCCTGTCC 60.435 66.667 3.58 0.00 42.39 4.02
2404 2436 2.669569 GCTGGCGAGCTCACCAAA 60.670 61.111 23.25 2.82 42.52 3.28
2449 2481 4.081917 GTCTCCTGTAATCTAGGCTATGGC 60.082 50.000 0.00 0.00 35.23 4.40
2486 2518 6.759827 TGTAAATCTCGGCTTTAGTTATCCAC 59.240 38.462 0.00 0.00 0.00 4.02
2500 2532 6.732896 AGTTATCCACGATTGAGGTAGATT 57.267 37.500 0.00 0.00 0.00 2.40
2509 2541 7.091443 CACGATTGAGGTAGATTATCCTAACC 58.909 42.308 0.00 2.00 33.83 2.85
2510 2542 6.781014 ACGATTGAGGTAGATTATCCTAACCA 59.219 38.462 10.33 0.00 33.83 3.67
2511 2543 7.039644 ACGATTGAGGTAGATTATCCTAACCAG 60.040 40.741 10.33 0.64 33.83 4.00
2516 2548 8.651389 TGAGGTAGATTATCCTAACCAGATTTG 58.349 37.037 10.33 0.00 33.83 2.32
2519 2551 8.871125 GGTAGATTATCCTAACCAGATTTGAGA 58.129 37.037 4.69 0.00 0.00 3.27
2537 2569 8.831715 ATTTGAGATTGTTACACCAAAAATCC 57.168 30.769 0.00 0.00 0.00 3.01
2542 2574 7.433680 AGATTGTTACACCAAAAATCCTGTTC 58.566 34.615 0.00 0.00 0.00 3.18
2565 2597 3.961576 GGAACCGTCCCTCTAATCG 57.038 57.895 0.00 0.00 38.08 3.34
2589 2621 6.562518 GTGGTAGTAGATTCGATATTAGGGC 58.437 44.000 0.00 0.00 0.00 5.19
2678 2712 3.876914 CCATGCGCTAGTTTTGGATCTTA 59.123 43.478 9.73 0.00 0.00 2.10
2680 2714 4.202245 TGCGCTAGTTTTGGATCTTAGT 57.798 40.909 9.73 0.00 0.00 2.24
2692 2726 5.459536 TGGATCTTAGTCCATTCTCATCG 57.540 43.478 0.00 0.00 43.20 3.84
2693 2727 4.281941 TGGATCTTAGTCCATTCTCATCGG 59.718 45.833 0.00 0.00 43.20 4.18
2717 2751 6.806739 GGATCAAGTTGTAAAGCACCAATAAC 59.193 38.462 2.11 0.00 0.00 1.89
2746 2780 3.054139 ACCAGAGCTTCTTATTGCCATCA 60.054 43.478 0.00 0.00 0.00 3.07
2747 2781 4.142790 CCAGAGCTTCTTATTGCCATCAT 58.857 43.478 0.00 0.00 0.00 2.45
2748 2782 4.215827 CCAGAGCTTCTTATTGCCATCATC 59.784 45.833 0.00 0.00 0.00 2.92
2749 2783 4.820173 CAGAGCTTCTTATTGCCATCATCA 59.180 41.667 0.00 0.00 0.00 3.07
2770 2804 6.040209 TCATATTTTGCATTTTGCTCTGGT 57.960 33.333 0.75 0.00 45.31 4.00
2795 2829 5.582550 GTTATCATTACCAAGCCTTCTTGC 58.417 41.667 0.00 0.00 46.38 4.01
2802 2836 1.891150 CCAAGCCTTCTTGCAAGTGAT 59.109 47.619 25.19 11.67 46.38 3.06
2806 2840 2.307098 AGCCTTCTTGCAAGTGATAGGT 59.693 45.455 25.19 13.39 0.00 3.08
2807 2841 2.421424 GCCTTCTTGCAAGTGATAGGTG 59.579 50.000 25.19 8.32 0.00 4.00
2808 2842 3.679389 CCTTCTTGCAAGTGATAGGTGT 58.321 45.455 25.19 0.00 0.00 4.16
2809 2843 3.438087 CCTTCTTGCAAGTGATAGGTGTG 59.562 47.826 25.19 0.00 0.00 3.82
2810 2844 3.057969 TCTTGCAAGTGATAGGTGTGG 57.942 47.619 25.19 0.00 0.00 4.17
2811 2845 2.637382 TCTTGCAAGTGATAGGTGTGGA 59.363 45.455 25.19 0.00 0.00 4.02
2812 2846 2.472695 TGCAAGTGATAGGTGTGGAC 57.527 50.000 0.00 0.00 0.00 4.02
2813 2847 1.696884 TGCAAGTGATAGGTGTGGACA 59.303 47.619 0.00 0.00 0.00 4.02
2814 2848 2.105649 TGCAAGTGATAGGTGTGGACAA 59.894 45.455 0.00 0.00 0.00 3.18
2815 2849 3.244875 TGCAAGTGATAGGTGTGGACAAT 60.245 43.478 0.00 0.00 0.00 2.71
2816 2850 3.127548 GCAAGTGATAGGTGTGGACAATG 59.872 47.826 0.00 0.00 0.00 2.82
2817 2851 4.326826 CAAGTGATAGGTGTGGACAATGT 58.673 43.478 0.00 0.00 0.00 2.71
2818 2852 3.942829 AGTGATAGGTGTGGACAATGTG 58.057 45.455 0.00 0.00 0.00 3.21
2819 2853 3.582647 AGTGATAGGTGTGGACAATGTGA 59.417 43.478 0.00 0.00 0.00 3.58
2820 2854 3.684788 GTGATAGGTGTGGACAATGTGAC 59.315 47.826 0.00 0.00 0.00 3.67
2821 2855 2.448926 TAGGTGTGGACAATGTGACG 57.551 50.000 0.00 0.00 0.00 4.35
2822 2856 0.250295 AGGTGTGGACAATGTGACGG 60.250 55.000 0.00 0.00 0.00 4.79
2823 2857 1.574428 GTGTGGACAATGTGACGGC 59.426 57.895 0.00 0.00 0.00 5.68
2824 2858 1.599518 TGTGGACAATGTGACGGCC 60.600 57.895 0.00 0.00 0.00 6.13
2825 2859 2.033448 TGGACAATGTGACGGCCC 59.967 61.111 0.00 0.00 0.00 5.80
2826 2860 2.351276 GGACAATGTGACGGCCCT 59.649 61.111 0.00 0.00 0.00 5.19
2827 2861 1.303317 GGACAATGTGACGGCCCTT 60.303 57.895 0.00 0.00 0.00 3.95
2828 2862 0.035820 GGACAATGTGACGGCCCTTA 60.036 55.000 0.00 0.00 0.00 2.69
2829 2863 1.612199 GGACAATGTGACGGCCCTTAA 60.612 52.381 0.00 0.00 0.00 1.85
2830 2864 2.365582 GACAATGTGACGGCCCTTAAT 58.634 47.619 0.00 0.00 0.00 1.40
2831 2865 3.537580 GACAATGTGACGGCCCTTAATA 58.462 45.455 0.00 0.00 0.00 0.98
2832 2866 3.275999 ACAATGTGACGGCCCTTAATAC 58.724 45.455 0.00 0.00 0.00 1.89
2833 2867 2.616842 CAATGTGACGGCCCTTAATACC 59.383 50.000 0.00 0.00 0.00 2.73
2834 2868 1.575419 TGTGACGGCCCTTAATACCT 58.425 50.000 0.00 0.00 0.00 3.08
2835 2869 1.910671 TGTGACGGCCCTTAATACCTT 59.089 47.619 0.00 0.00 0.00 3.50
2836 2870 3.106054 TGTGACGGCCCTTAATACCTTA 58.894 45.455 0.00 0.00 0.00 2.69
2837 2871 3.712733 TGTGACGGCCCTTAATACCTTAT 59.287 43.478 0.00 0.00 0.00 1.73
2838 2872 4.164604 TGTGACGGCCCTTAATACCTTATT 59.835 41.667 0.00 0.00 0.00 1.40
2839 2873 5.128205 GTGACGGCCCTTAATACCTTATTT 58.872 41.667 0.00 0.00 0.00 1.40
2840 2874 6.126825 TGTGACGGCCCTTAATACCTTATTTA 60.127 38.462 0.00 0.00 0.00 1.40
2841 2875 6.426025 GTGACGGCCCTTAATACCTTATTTAG 59.574 42.308 0.00 0.00 0.00 1.85
2856 2890 7.730364 CCTTATTTAGGCTACATTAGTGTGG 57.270 40.000 0.34 0.00 36.80 4.17
2857 2891 6.710744 CCTTATTTAGGCTACATTAGTGTGGG 59.289 42.308 0.34 0.00 36.80 4.61
3034 3069 7.516198 AATAGCCATAACACAAAGATGGATC 57.484 36.000 4.32 0.00 42.41 3.36
3048 3083 9.082313 ACAAAGATGGATCATTGAGTTAAAAGT 57.918 29.630 10.70 0.00 37.61 2.66
3055 3090 9.699410 TGGATCATTGAGTTAAAAGTATGGAAT 57.301 29.630 0.00 0.00 0.00 3.01
3155 3190 7.551035 TTTTCAAAGACCCATCAATTGTTTG 57.449 32.000 5.13 7.15 0.00 2.93
3249 3284 2.604139 CCTTAAAGGGCTTTTGGTGGA 58.396 47.619 4.68 0.00 34.23 4.02
3391 4757 6.139679 TCATTTTAGTTGAAGGAGGATGGT 57.860 37.500 0.00 0.00 0.00 3.55
3441 4807 6.738114 TGAAGTCAAACTCCATTGAAATGAC 58.262 36.000 4.58 0.00 40.76 3.06
3554 4920 9.927668 TGTACCTACAGTTAACCAGTAAATAAC 57.072 33.333 0.88 3.60 0.00 1.89
3715 5154 7.651027 AAGATAGAGCATGCAAGGTTTTAAT 57.349 32.000 21.98 0.00 0.00 1.40
3771 5210 6.734104 ATGTTGCTTCTGTCACTTCTATTC 57.266 37.500 0.00 0.00 0.00 1.75
3810 5249 3.769536 CATTTCAATGTAAGGCCGGTTC 58.230 45.455 1.90 0.00 0.00 3.62
3938 5377 5.994250 ACTGCTCCAGATTTAAGCATTCTA 58.006 37.500 0.00 0.00 44.44 2.10
3993 5432 5.924825 GCTCATCTTTTTGTCAAGCTTTCAT 59.075 36.000 0.00 0.00 0.00 2.57
4162 5601 5.581874 GCAATTTGGGTTAATCATGTTGGAG 59.418 40.000 0.00 0.00 0.00 3.86
4215 5654 5.248640 AGTATTGGCTGGCATGTATGTATC 58.751 41.667 4.22 0.00 0.00 2.24
4216 5655 3.574354 TTGGCTGGCATGTATGTATCA 57.426 42.857 4.22 0.00 0.00 2.15
4217 5656 3.793819 TGGCTGGCATGTATGTATCAT 57.206 42.857 0.00 0.00 0.00 2.45
4221 5660 5.009911 TGGCTGGCATGTATGTATCATTTTC 59.990 40.000 0.00 0.00 0.00 2.29
4278 5718 7.229306 TCTGTTGAAACTAGTCAATTTCTGCAT 59.771 33.333 0.00 0.00 39.61 3.96
4284 5724 3.520290 AGTCAATTTCTGCATGCATGG 57.480 42.857 27.34 11.02 0.00 3.66
4328 5769 3.291611 GCTCATGCCAAGTTGGGG 58.708 61.111 23.36 0.00 38.19 4.96
4373 5815 9.844257 AAACCTGATTAAAATGTTCATCCAAAA 57.156 25.926 0.00 0.00 0.00 2.44
4427 5877 7.114754 GGCTAAGTTTACACCCCTTATTAAGT 58.885 38.462 2.88 0.00 0.00 2.24
4528 5978 6.254281 TCAAGGAACTATTTGCAAAGCTAC 57.746 37.500 18.19 7.65 38.49 3.58
4544 5994 5.824904 AAGCTACATATGCAAAAGTGGAG 57.175 39.130 1.58 0.00 0.00 3.86
4572 6022 6.588719 TCAATACCACTTCATTTTTGAGGG 57.411 37.500 0.00 0.00 0.00 4.30
4593 6043 4.137543 GGTTGTGTTGTCTCATCTTTCCT 58.862 43.478 0.00 0.00 0.00 3.36
4596 6046 4.380531 TGTGTTGTCTCATCTTTCCTGTC 58.619 43.478 0.00 0.00 0.00 3.51
4603 6053 3.261897 TCTCATCTTTCCTGTCCTCAACC 59.738 47.826 0.00 0.00 0.00 3.77
4611 6061 1.679139 CTGTCCTCAACCTTTGTGCA 58.321 50.000 0.00 0.00 0.00 4.57
4632 6082 2.283298 TCGAGGCATTGCATTTCTCTC 58.717 47.619 11.39 5.70 0.00 3.20
4693 6143 2.300152 TGGAGACTCACATCCACACTTC 59.700 50.000 4.53 0.00 40.70 3.01
4788 6238 6.897966 AGATAAGGTTCCTGACATCTAAGTGA 59.102 38.462 8.27 0.00 0.00 3.41
4952 6402 4.221482 ACAGAATATCACACTCAGACTGCA 59.779 41.667 0.00 0.00 0.00 4.41
5030 6480 6.426937 TGACAATGCTTTACTCCTTAAGTCAC 59.573 38.462 0.97 0.00 39.55 3.67
5091 6541 5.734855 TTTGCAAATATCTTAGTCCTCGC 57.265 39.130 8.05 0.00 0.00 5.03
5100 6550 5.804692 ATCTTAGTCCTCGCATATAGTCG 57.195 43.478 0.00 0.00 0.00 4.18
5257 6707 4.320202 CCAAGGTCGTTGTTCACCTATTTG 60.320 45.833 4.67 0.00 42.61 2.32
5410 6860 6.914665 TCAACTCATTGATAAGGATGGGAAT 58.085 36.000 0.00 0.00 40.01 3.01
5412 6862 8.159447 TCAACTCATTGATAAGGATGGGAATAG 58.841 37.037 0.00 0.00 40.01 1.73
5434 6884 1.901833 AGCCCCATAAAAGCAAACCTG 59.098 47.619 0.00 0.00 0.00 4.00
5451 6901 2.508300 ACCTGCCCGAGTTAATTACCAT 59.492 45.455 0.00 0.00 0.00 3.55
5526 6976 0.606401 CCAGGAGGTTGCGTGTGATT 60.606 55.000 0.00 0.00 0.00 2.57
5535 6985 4.630069 AGGTTGCGTGTGATTAGATGTAAC 59.370 41.667 0.32 0.32 33.08 2.50
5680 7130 1.827344 CATCCTGTGTCTCCACTAGCA 59.173 52.381 0.00 0.00 42.34 3.49
5742 7192 2.857618 TGTGTGTTTTTGTCGTCAAGC 58.142 42.857 0.00 0.00 34.88 4.01
5743 7193 2.226674 TGTGTGTTTTTGTCGTCAAGCA 59.773 40.909 0.00 0.00 34.88 3.91
5773 7223 5.061721 AGGGAGTTGGTGTTTTCTATGTT 57.938 39.130 0.00 0.00 0.00 2.71
5780 7230 7.433680 AGTTGGTGTTTTCTATGTTTGGATTC 58.566 34.615 0.00 0.00 0.00 2.52
5857 7307 5.287170 GGGGACGTTTATTTGTTAGACAC 57.713 43.478 0.00 0.00 0.00 3.67
5861 7311 6.017687 GGGACGTTTATTTGTTAGACACTTGT 60.018 38.462 0.00 0.00 0.00 3.16
5862 7312 7.171337 GGGACGTTTATTTGTTAGACACTTGTA 59.829 37.037 0.00 0.00 0.00 2.41
5863 7313 8.006027 GGACGTTTATTTGTTAGACACTTGTAC 58.994 37.037 0.00 0.00 0.00 2.90
5864 7314 8.652810 ACGTTTATTTGTTAGACACTTGTACT 57.347 30.769 0.00 0.00 0.00 2.73
5865 7315 9.748708 ACGTTTATTTGTTAGACACTTGTACTA 57.251 29.630 0.00 0.00 0.00 1.82
5866 7316 9.999883 CGTTTATTTGTTAGACACTTGTACTAC 57.000 33.333 0.00 0.00 0.00 2.73
5869 7319 9.918630 TTATTTGTTAGACACTTGTACTACCTC 57.081 33.333 0.00 0.00 0.00 3.85
5870 7320 5.972107 TGTTAGACACTTGTACTACCTCC 57.028 43.478 0.00 0.00 0.00 4.30
5871 7321 4.456911 TGTTAGACACTTGTACTACCTCCG 59.543 45.833 0.00 0.00 0.00 4.63
5872 7322 3.151912 AGACACTTGTACTACCTCCGT 57.848 47.619 0.00 0.00 0.00 4.69
5873 7323 3.080319 AGACACTTGTACTACCTCCGTC 58.920 50.000 0.00 0.00 0.00 4.79
5874 7324 3.080319 GACACTTGTACTACCTCCGTCT 58.920 50.000 0.00 0.00 0.00 4.18
5875 7325 3.080319 ACACTTGTACTACCTCCGTCTC 58.920 50.000 0.00 0.00 0.00 3.36
5876 7326 2.095532 CACTTGTACTACCTCCGTCTCG 59.904 54.545 0.00 0.00 0.00 4.04
5888 7338 2.933495 CCGTCTCGGTGAATAAGTCA 57.067 50.000 0.00 0.00 42.73 3.41
5889 7339 3.438297 CCGTCTCGGTGAATAAGTCAT 57.562 47.619 0.00 0.00 42.73 3.06
5890 7340 3.782046 CCGTCTCGGTGAATAAGTCATT 58.218 45.455 0.00 0.00 42.73 2.57
5891 7341 3.797256 CCGTCTCGGTGAATAAGTCATTC 59.203 47.826 0.00 0.00 42.73 2.67
5892 7342 3.482472 CGTCTCGGTGAATAAGTCATTCG 59.518 47.826 0.00 0.00 45.25 3.34
5899 7349 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
5900 7350 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
5901 7351 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
5902 7352 6.690098 GTGAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 45.25 2.10
5903 7353 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
5904 7354 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
5905 7355 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
5906 7356 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
5907 7357 2.031314 TCATTCGCGTAGTTCTAGGTCG 59.969 50.000 5.77 5.99 0.00 4.79
5908 7358 1.725641 TTCGCGTAGTTCTAGGTCGA 58.274 50.000 5.77 11.56 0.00 4.20
5909 7359 1.284657 TCGCGTAGTTCTAGGTCGAG 58.715 55.000 5.77 0.00 0.00 4.04
5910 7360 0.304098 CGCGTAGTTCTAGGTCGAGG 59.696 60.000 0.00 0.00 0.00 4.63
5911 7361 1.661341 GCGTAGTTCTAGGTCGAGGA 58.339 55.000 0.00 0.00 0.00 3.71
5912 7362 2.220313 GCGTAGTTCTAGGTCGAGGAT 58.780 52.381 0.00 0.00 0.00 3.24
5913 7363 2.617774 GCGTAGTTCTAGGTCGAGGATT 59.382 50.000 0.00 0.00 0.00 3.01
5914 7364 3.066481 GCGTAGTTCTAGGTCGAGGATTT 59.934 47.826 0.00 0.00 0.00 2.17
5915 7365 4.274459 GCGTAGTTCTAGGTCGAGGATTTA 59.726 45.833 0.00 0.00 0.00 1.40
5916 7366 5.220931 GCGTAGTTCTAGGTCGAGGATTTAA 60.221 44.000 0.00 0.00 0.00 1.52
5917 7367 6.197981 CGTAGTTCTAGGTCGAGGATTTAAC 58.802 44.000 0.00 0.00 0.00 2.01
5918 7368 6.038050 CGTAGTTCTAGGTCGAGGATTTAACT 59.962 42.308 0.00 0.00 0.00 2.24
5919 7369 7.225538 CGTAGTTCTAGGTCGAGGATTTAACTA 59.774 40.741 0.00 0.00 0.00 2.24
5920 7370 9.065798 GTAGTTCTAGGTCGAGGATTTAACTAT 57.934 37.037 8.53 0.00 31.72 2.12
5921 7371 8.536340 AGTTCTAGGTCGAGGATTTAACTATT 57.464 34.615 0.00 0.00 0.00 1.73
5922 7372 8.979534 AGTTCTAGGTCGAGGATTTAACTATTT 58.020 33.333 0.00 0.00 0.00 1.40
5928 7378 9.901172 AGGTCGAGGATTTAACTATTTAAATGT 57.099 29.630 13.70 4.48 44.51 2.71
5929 7379 9.931210 GGTCGAGGATTTAACTATTTAAATGTG 57.069 33.333 13.70 6.27 44.51 3.21
6038 7488 6.757897 TTTAATTGCTCAAATCGATGACCT 57.242 33.333 0.00 0.00 0.00 3.85
6039 7489 7.857734 TTTAATTGCTCAAATCGATGACCTA 57.142 32.000 0.00 0.00 0.00 3.08
6040 7490 5.998454 AATTGCTCAAATCGATGACCTAG 57.002 39.130 0.00 0.00 0.00 3.02
6041 7491 4.736126 TTGCTCAAATCGATGACCTAGA 57.264 40.909 0.00 0.00 0.00 2.43
6042 7492 4.736126 TGCTCAAATCGATGACCTAGAA 57.264 40.909 0.00 0.00 0.00 2.10
6043 7493 4.433615 TGCTCAAATCGATGACCTAGAAC 58.566 43.478 0.00 0.00 0.00 3.01
6044 7494 4.160439 TGCTCAAATCGATGACCTAGAACT 59.840 41.667 0.00 0.00 0.00 3.01
6045 7495 5.359860 TGCTCAAATCGATGACCTAGAACTA 59.640 40.000 0.00 0.00 0.00 2.24
6046 7496 5.688176 GCTCAAATCGATGACCTAGAACTAC 59.312 44.000 0.00 0.00 0.00 2.73
6047 7497 5.817988 TCAAATCGATGACCTAGAACTACG 58.182 41.667 0.00 0.00 0.00 3.51
6048 7498 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
6049 7499 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
6050 7500 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
6051 7501 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
6052 7502 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
6053 7503 3.416119 TGACCTAGAACTACGCGAATG 57.584 47.619 15.93 4.47 0.00 2.67
6054 7504 3.011818 TGACCTAGAACTACGCGAATGA 58.988 45.455 15.93 0.00 0.00 2.57
6055 7505 3.441222 TGACCTAGAACTACGCGAATGAA 59.559 43.478 15.93 0.00 0.00 2.57
6056 7506 4.097437 TGACCTAGAACTACGCGAATGAAT 59.903 41.667 15.93 0.00 0.00 2.57
6057 7507 4.360563 ACCTAGAACTACGCGAATGAATG 58.639 43.478 15.93 0.00 0.00 2.67
6058 7508 4.097437 ACCTAGAACTACGCGAATGAATGA 59.903 41.667 15.93 0.00 0.00 2.57
6059 7509 4.441415 CCTAGAACTACGCGAATGAATGAC 59.559 45.833 15.93 0.00 0.00 3.06
6060 7510 4.111375 AGAACTACGCGAATGAATGACT 57.889 40.909 15.93 0.00 0.00 3.41
6061 7511 4.495422 AGAACTACGCGAATGAATGACTT 58.505 39.130 15.93 0.00 0.00 3.01
6062 7512 5.647589 AGAACTACGCGAATGAATGACTTA 58.352 37.500 15.93 0.00 0.00 2.24
6063 7513 6.273825 AGAACTACGCGAATGAATGACTTAT 58.726 36.000 15.93 0.00 0.00 1.73
6064 7514 6.757010 AGAACTACGCGAATGAATGACTTATT 59.243 34.615 15.93 0.00 0.00 1.40
6065 7515 6.512177 ACTACGCGAATGAATGACTTATTC 57.488 37.500 15.93 0.00 44.45 1.75
6076 7526 6.145338 GAATGACTTATTCACCTAGACGGA 57.855 41.667 0.00 0.00 43.79 4.69
6077 7527 5.776173 ATGACTTATTCACCTAGACGGAG 57.224 43.478 0.00 0.00 36.92 4.63
6078 7528 3.952323 TGACTTATTCACCTAGACGGAGG 59.048 47.826 0.00 0.00 42.89 4.30
6130 7580 2.880890 GCATAGGGCTGTGTTAGATTGG 59.119 50.000 0.00 0.00 40.25 3.16
6191 7641 2.427095 GGCTTTAATTCGAATGTGGCCT 59.573 45.455 24.51 9.30 34.86 5.19
6209 7659 9.959721 ATGTGGCCTTATATATTTTCGTTAGAT 57.040 29.630 3.32 0.00 0.00 1.98
6253 7703 6.707440 TTTCAGTGCAAGAATAAAGTTCCA 57.293 33.333 3.93 0.00 0.00 3.53
6254 7704 6.707440 TTCAGTGCAAGAATAAAGTTCCAA 57.293 33.333 0.00 0.00 0.00 3.53
6255 7705 6.707440 TCAGTGCAAGAATAAAGTTCCAAA 57.293 33.333 0.00 0.00 0.00 3.28
6257 7707 8.402798 TCAGTGCAAGAATAAAGTTCCAAATA 57.597 30.769 0.00 0.00 0.00 1.40
6282 7732 6.534475 TTTTAACTGGACCTATAGAGCGAA 57.466 37.500 0.00 0.00 0.00 4.70
6345 7795 3.060363 GCACGTCGAACGATAATTTCACT 59.940 43.478 13.06 0.00 46.05 3.41
6419 7869 3.821306 CCAAGGTATAGTTGGGCCC 57.179 57.895 17.59 17.59 40.83 5.80
6426 7876 3.270960 AGGTATAGTTGGGCCCAAATTCA 59.729 43.478 39.76 25.10 37.70 2.57
6467 7917 1.876156 GGCTCAGCCGAAAATCATAGG 59.124 52.381 0.00 0.00 39.62 2.57
6473 7923 4.136796 CAGCCGAAAATCATAGGAATGGA 58.863 43.478 0.00 0.00 33.61 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 8.739039 ACATGCACTTAAAAGTATATCTTGCAA 58.261 29.630 0.00 0.00 36.46 4.08
166 167 4.038162 CCAACTCCCCTTTACTAGAGATCG 59.962 50.000 0.00 0.00 0.00 3.69
175 176 1.072806 ACGGAACCAACTCCCCTTTAC 59.927 52.381 0.00 0.00 31.03 2.01
212 213 5.843969 ACCAGAAAAACCAATAGGAAACCAT 59.156 36.000 0.00 0.00 38.69 3.55
249 250 1.772182 TGGTTTTTATTTGTGCGGCG 58.228 45.000 0.51 0.51 0.00 6.46
298 300 4.277174 AGTTAATGCATGACGTGGTTTTGA 59.723 37.500 0.00 0.00 0.00 2.69
300 302 4.277174 TGAGTTAATGCATGACGTGGTTTT 59.723 37.500 0.00 0.00 0.00 2.43
359 361 5.368145 GGGAAGGCAAGAAAAGTTTTGATT 58.632 37.500 5.36 0.00 0.00 2.57
360 362 4.202357 GGGGAAGGCAAGAAAAGTTTTGAT 60.202 41.667 5.36 0.00 0.00 2.57
361 363 3.133901 GGGGAAGGCAAGAAAAGTTTTGA 59.866 43.478 5.36 0.00 0.00 2.69
362 364 3.134623 AGGGGAAGGCAAGAAAAGTTTTG 59.865 43.478 5.36 0.00 0.00 2.44
365 367 2.775490 AGGGGAAGGCAAGAAAAGTT 57.225 45.000 0.00 0.00 0.00 2.66
366 368 2.225041 GGTAGGGGAAGGCAAGAAAAGT 60.225 50.000 0.00 0.00 0.00 2.66
367 369 2.447443 GGTAGGGGAAGGCAAGAAAAG 58.553 52.381 0.00 0.00 0.00 2.27
368 370 1.076513 GGGTAGGGGAAGGCAAGAAAA 59.923 52.381 0.00 0.00 0.00 2.29
411 413 9.442062 TCCACCATATTCTAGATTTTGGTAGTA 57.558 33.333 21.77 12.09 35.77 1.82
412 414 8.331931 TCCACCATATTCTAGATTTTGGTAGT 57.668 34.615 21.77 5.22 35.77 2.73
413 415 9.224267 CATCCACCATATTCTAGATTTTGGTAG 57.776 37.037 21.77 17.27 35.77 3.18
433 435 6.973843 TGTACGACATATACCTTACATCCAC 58.026 40.000 0.00 0.00 0.00 4.02
455 457 6.653020 TCTAGTGGCTGAACATCAATATTGT 58.347 36.000 14.97 0.43 0.00 2.71
531 533 8.424918 ACAACAATATGTGACCCAATAAAAACA 58.575 29.630 0.00 0.00 30.82 2.83
627 630 5.220796 GGTCGCCAAGAAATAAAGTGATACC 60.221 44.000 0.00 0.00 0.00 2.73
650 653 8.380644 CGACTAAACTAAATGAGTACACATTGG 58.619 37.037 17.63 15.21 39.88 3.16
658 661 7.660112 TCAACACCGACTAAACTAAATGAGTA 58.340 34.615 0.00 0.00 37.44 2.59
745 748 9.659135 TCATAATGAATTAATTGAAGATGGGGT 57.341 29.630 5.17 0.00 0.00 4.95
967 970 9.371136 GTGTGTGAAAAGATGAAGATCACTATA 57.629 33.333 0.00 0.00 40.70 1.31
1064 1067 5.068234 AGAACGTAATCGATCACCTTCAA 57.932 39.130 11.51 0.00 40.45 2.69
1073 1076 7.094720 CCTCTTGGATAGTAGAACGTAATCGAT 60.095 40.741 0.00 0.00 36.79 3.59
1128 1131 6.291377 ACAGCACATGATAATAACCCTACAG 58.709 40.000 0.00 0.00 0.00 2.74
1140 1143 3.388024 GTCCCTCCTTACAGCACATGATA 59.612 47.826 0.00 0.00 0.00 2.15
1141 1144 2.171448 GTCCCTCCTTACAGCACATGAT 59.829 50.000 0.00 0.00 0.00 2.45
1142 1145 1.555075 GTCCCTCCTTACAGCACATGA 59.445 52.381 0.00 0.00 0.00 3.07
1227 1230 6.755542 AAGAAAATAATGACCCCAAAACCA 57.244 33.333 0.00 0.00 0.00 3.67
1239 1242 7.201767 CCACTCCCTAGCTCAAAGAAAATAATG 60.202 40.741 0.00 0.00 0.00 1.90
1302 1305 9.265901 GCAACATCTTGATGTATGATTACTAGT 57.734 33.333 15.50 0.00 33.81 2.57
1324 1327 2.128771 TTAGATGGGAGCCAAGCAAC 57.871 50.000 0.00 0.00 36.95 4.17
1340 1343 3.112580 CAAACACCTTGCGTTGGTTTAG 58.887 45.455 0.00 0.00 35.28 1.85
1409 1415 3.190535 AGTTCCATTTTCGAAATCCCGTG 59.809 43.478 12.12 6.17 0.00 4.94
1410 1416 3.418047 AGTTCCATTTTCGAAATCCCGT 58.582 40.909 12.12 0.00 0.00 5.28
1436 1442 4.396478 TGAGACTTGGTTAGATCTCAGTCG 59.604 45.833 0.00 0.00 41.99 4.18
1465 1471 4.754618 ACGATGTGACAAAATGCTACAAGA 59.245 37.500 0.00 0.00 0.00 3.02
1468 1474 4.376920 CGAACGATGTGACAAAATGCTACA 60.377 41.667 0.00 0.00 0.00 2.74
1486 1492 2.969443 AGGAAGAAATGTTGCGAACG 57.031 45.000 0.00 0.00 0.00 3.95
1487 1493 3.424433 CGGTAGGAAGAAATGTTGCGAAC 60.424 47.826 0.00 0.00 0.00 3.95
1490 1496 2.073816 ACGGTAGGAAGAAATGTTGCG 58.926 47.619 0.00 0.00 0.00 4.85
1528 1534 1.089920 GGCTGACATGCTACAACCAG 58.910 55.000 0.00 0.00 0.00 4.00
1550 1556 4.914504 GTGAGATGACATGCTACAGATACG 59.085 45.833 0.00 0.00 0.00 3.06
1553 1559 4.202233 CCAGTGAGATGACATGCTACAGAT 60.202 45.833 0.00 0.00 0.00 2.90
1554 1560 3.131755 CCAGTGAGATGACATGCTACAGA 59.868 47.826 0.00 0.00 0.00 3.41
1555 1561 3.455327 CCAGTGAGATGACATGCTACAG 58.545 50.000 0.00 0.00 0.00 2.74
1577 1584 3.585862 CCGTCAATGGAGGATATTACGG 58.414 50.000 0.00 0.00 42.12 4.02
1604 1611 5.062308 GCTACGACTGTTCTGACTAAAATGG 59.938 44.000 0.00 0.00 0.00 3.16
1621 1628 1.415374 ACGACAACACATGCTACGAC 58.585 50.000 0.00 0.00 0.00 4.34
1623 1630 1.790043 TCAACGACAACACATGCTACG 59.210 47.619 0.00 0.00 0.00 3.51
1670 1677 2.310966 GGCTAGCTACAATCGGCGC 61.311 63.158 15.72 0.00 0.00 6.53
1823 1835 4.019591 ACCCAGACAAGGAATTAGGTACAC 60.020 45.833 0.00 0.00 0.00 2.90
1843 1855 2.569059 GCCTTCCTATTTTCCGTACCC 58.431 52.381 0.00 0.00 0.00 3.69
1924 1936 1.879380 CAGCGACCATGAAAAGGTGAA 59.121 47.619 0.00 0.00 40.09 3.18
2012 2026 1.555533 GGAAACTCGAGGTGGGAGATT 59.444 52.381 18.41 0.00 35.49 2.40
2043 2057 2.048127 AACGAAGCCCACGAGCTC 60.048 61.111 2.73 2.73 44.11 4.09
2083 2097 4.824289 TCGTTAGACCACCTCCATTTTAC 58.176 43.478 0.00 0.00 0.00 2.01
2098 2112 4.760204 TGCTATGCTGCTATACTCGTTAGA 59.240 41.667 0.00 0.00 0.00 2.10
2112 2126 1.752498 TCCATTTTGGCTGCTATGCTG 59.248 47.619 0.00 0.00 37.47 4.41
2113 2127 2.148446 TCCATTTTGGCTGCTATGCT 57.852 45.000 0.00 0.00 37.47 3.79
2114 2128 2.606308 CGATCCATTTTGGCTGCTATGC 60.606 50.000 0.00 0.00 37.47 3.14
2115 2129 2.880268 TCGATCCATTTTGGCTGCTATG 59.120 45.455 0.00 0.00 37.47 2.23
2116 2130 3.144506 CTCGATCCATTTTGGCTGCTAT 58.855 45.455 0.00 0.00 37.47 2.97
2162 2177 3.673484 ATTGTGTGGGCAGTGCGC 61.673 61.111 24.22 24.22 41.94 6.09
2163 2178 2.256158 CATTGTGTGGGCAGTGCG 59.744 61.111 9.45 0.00 0.00 5.34
2164 2179 1.174712 AGACATTGTGTGGGCAGTGC 61.175 55.000 6.55 6.55 30.52 4.40
2177 2192 2.519013 GGGGAGCTTGACAAAGACATT 58.481 47.619 0.00 0.00 35.19 2.71
2178 2193 1.272147 GGGGGAGCTTGACAAAGACAT 60.272 52.381 0.00 0.00 35.19 3.06
2179 2194 0.110486 GGGGGAGCTTGACAAAGACA 59.890 55.000 0.00 0.00 35.19 3.41
2196 2211 1.595382 GGGCATCTTCGATGACGGG 60.595 63.158 2.72 0.00 40.21 5.28
2214 2229 3.055719 GCCACCACCATCACCGTG 61.056 66.667 0.00 0.00 0.00 4.94
2222 2237 4.947147 GCGACAAGGCCACCACCA 62.947 66.667 5.01 0.00 0.00 4.17
2336 2351 2.435059 GGGACAGGAGCACGAAGC 60.435 66.667 0.00 0.00 46.19 3.86
2337 2352 1.079543 CAGGGACAGGAGCACGAAG 60.080 63.158 0.00 0.00 0.00 3.79
2347 2362 4.767255 GCTCGGTGGCAGGGACAG 62.767 72.222 0.00 0.00 0.00 3.51
2404 2436 1.056660 ATGAAGCCGATATCCCCGTT 58.943 50.000 0.00 0.00 0.00 4.44
2413 2445 3.034635 ACAGGAGACTAATGAAGCCGAT 58.965 45.455 0.00 0.00 40.21 4.18
2449 2481 5.689819 CCGAGATTTACAGAAACCAGTTTG 58.310 41.667 0.00 0.00 32.11 2.93
2486 2518 7.176865 TCTGGTTAGGATAATCTACCTCAATCG 59.823 40.741 0.00 0.00 37.68 3.34
2500 2532 9.832445 GTAACAATCTCAAATCTGGTTAGGATA 57.168 33.333 0.00 0.00 0.00 2.59
2509 2541 8.870160 TTTTTGGTGTAACAATCTCAAATCTG 57.130 30.769 0.00 0.00 39.98 2.90
2510 2542 9.696917 GATTTTTGGTGTAACAATCTCAAATCT 57.303 29.630 8.94 0.00 39.98 2.40
2511 2543 8.925700 GGATTTTTGGTGTAACAATCTCAAATC 58.074 33.333 8.15 8.15 39.98 2.17
2516 2548 6.981722 ACAGGATTTTTGGTGTAACAATCTC 58.018 36.000 0.00 0.00 39.98 2.75
2519 2551 7.118496 TGAACAGGATTTTTGGTGTAACAAT 57.882 32.000 0.00 0.00 39.98 2.71
2554 2586 5.579753 ATCTACTACCACGATTAGAGGGA 57.420 43.478 0.00 0.00 34.66 4.20
2565 2597 6.152323 TGCCCTAATATCGAATCTACTACCAC 59.848 42.308 0.00 0.00 0.00 4.16
2621 2655 3.188460 CCACCTCCACGACAATAAAAGTG 59.812 47.826 0.00 0.00 0.00 3.16
2622 2656 3.408634 CCACCTCCACGACAATAAAAGT 58.591 45.455 0.00 0.00 0.00 2.66
2623 2657 2.161609 GCCACCTCCACGACAATAAAAG 59.838 50.000 0.00 0.00 0.00 2.27
2624 2658 2.156098 GCCACCTCCACGACAATAAAA 58.844 47.619 0.00 0.00 0.00 1.52
2634 2668 2.359900 CTCTACAATTGCCACCTCCAC 58.640 52.381 5.05 0.00 0.00 4.02
2678 2712 3.708631 ACTTGATCCGATGAGAATGGACT 59.291 43.478 0.00 0.00 33.91 3.85
2680 2714 4.080919 ACAACTTGATCCGATGAGAATGGA 60.081 41.667 0.00 0.00 35.96 3.41
2692 2726 4.846779 TTGGTGCTTTACAACTTGATCC 57.153 40.909 0.00 0.00 36.69 3.36
2693 2727 7.593825 AGTTATTGGTGCTTTACAACTTGATC 58.406 34.615 0.00 0.00 36.69 2.92
2717 2751 7.093992 GGCAATAAGAAGCTCTGGTAGTATAG 58.906 42.308 0.00 0.00 0.00 1.31
2770 2804 5.353394 AGAAGGCTTGGTAATGATAACGA 57.647 39.130 3.46 0.00 0.00 3.85
2795 2829 4.154737 CACATTGTCCACACCTATCACTTG 59.845 45.833 0.00 0.00 0.00 3.16
2802 2836 1.001520 CCGTCACATTGTCCACACCTA 59.998 52.381 0.00 0.00 0.00 3.08
2806 2840 1.599518 GGCCGTCACATTGTCCACA 60.600 57.895 0.00 0.00 0.00 4.17
2807 2841 2.332654 GGGCCGTCACATTGTCCAC 61.333 63.158 0.00 0.00 0.00 4.02
2808 2842 2.033448 GGGCCGTCACATTGTCCA 59.967 61.111 0.00 0.00 0.00 4.02
2809 2843 0.035820 TAAGGGCCGTCACATTGTCC 60.036 55.000 0.00 0.00 0.00 4.02
2810 2844 1.816074 TTAAGGGCCGTCACATTGTC 58.184 50.000 0.00 0.00 0.00 3.18
2811 2845 2.507407 ATTAAGGGCCGTCACATTGT 57.493 45.000 0.00 0.00 0.00 2.71
2812 2846 2.616842 GGTATTAAGGGCCGTCACATTG 59.383 50.000 0.00 0.00 0.00 2.82
2813 2847 2.508300 AGGTATTAAGGGCCGTCACATT 59.492 45.455 0.00 0.00 0.00 2.71
2814 2848 2.124411 AGGTATTAAGGGCCGTCACAT 58.876 47.619 0.00 0.00 0.00 3.21
2815 2849 1.575419 AGGTATTAAGGGCCGTCACA 58.425 50.000 0.00 0.00 0.00 3.58
2816 2850 2.704464 AAGGTATTAAGGGCCGTCAC 57.296 50.000 0.00 0.00 0.00 3.67
2817 2851 5.376756 AAATAAGGTATTAAGGGCCGTCA 57.623 39.130 0.00 0.00 0.00 4.35
2818 2852 5.936372 CCTAAATAAGGTATTAAGGGCCGTC 59.064 44.000 0.00 0.00 40.94 4.79
2819 2853 5.872963 CCTAAATAAGGTATTAAGGGCCGT 58.127 41.667 0.00 0.00 40.94 5.68
2829 2863 9.998106 CACACTAATGTAGCCTAAATAAGGTAT 57.002 33.333 0.00 0.00 41.98 2.73
2830 2864 8.426489 CCACACTAATGTAGCCTAAATAAGGTA 58.574 37.037 0.00 0.00 41.98 3.08
2831 2865 7.280356 CCACACTAATGTAGCCTAAATAAGGT 58.720 38.462 0.00 0.00 41.98 3.50
2832 2866 6.710744 CCCACACTAATGTAGCCTAAATAAGG 59.289 42.308 0.00 0.00 42.56 2.69
2833 2867 6.204882 GCCCACACTAATGTAGCCTAAATAAG 59.795 42.308 0.00 0.00 36.72 1.73
2834 2868 6.059484 GCCCACACTAATGTAGCCTAAATAA 58.941 40.000 0.00 0.00 36.72 1.40
2835 2869 5.368523 AGCCCACACTAATGTAGCCTAAATA 59.631 40.000 0.00 0.00 37.79 1.40
2836 2870 4.166144 AGCCCACACTAATGTAGCCTAAAT 59.834 41.667 0.00 0.00 37.79 1.40
2837 2871 3.521937 AGCCCACACTAATGTAGCCTAAA 59.478 43.478 0.00 0.00 37.79 1.85
2838 2872 3.112263 AGCCCACACTAATGTAGCCTAA 58.888 45.455 0.00 0.00 37.79 2.69
2839 2873 2.759355 AGCCCACACTAATGTAGCCTA 58.241 47.619 0.00 0.00 37.79 3.93
2840 2874 1.584724 AGCCCACACTAATGTAGCCT 58.415 50.000 0.00 0.00 37.79 4.58
2841 2875 2.434702 ACTAGCCCACACTAATGTAGCC 59.565 50.000 0.00 0.00 37.79 3.93
2842 2876 3.821421 ACTAGCCCACACTAATGTAGC 57.179 47.619 0.00 0.00 36.72 3.58
2843 2877 6.710597 TCTAACTAGCCCACACTAATGTAG 57.289 41.667 0.00 0.00 36.72 2.74
2844 2878 7.497595 CATTCTAACTAGCCCACACTAATGTA 58.502 38.462 0.00 0.00 36.72 2.29
2845 2879 6.349300 CATTCTAACTAGCCCACACTAATGT 58.651 40.000 0.00 0.00 40.80 2.71
2846 2880 5.237344 GCATTCTAACTAGCCCACACTAATG 59.763 44.000 0.00 0.00 0.00 1.90
2847 2881 5.104527 TGCATTCTAACTAGCCCACACTAAT 60.105 40.000 0.00 0.00 0.00 1.73
2848 2882 4.224147 TGCATTCTAACTAGCCCACACTAA 59.776 41.667 0.00 0.00 0.00 2.24
2849 2883 3.772572 TGCATTCTAACTAGCCCACACTA 59.227 43.478 0.00 0.00 0.00 2.74
2850 2884 2.571653 TGCATTCTAACTAGCCCACACT 59.428 45.455 0.00 0.00 0.00 3.55
2851 2885 2.985896 TGCATTCTAACTAGCCCACAC 58.014 47.619 0.00 0.00 0.00 3.82
2852 2886 3.931907 ATGCATTCTAACTAGCCCACA 57.068 42.857 0.00 0.00 0.00 4.17
2853 2887 6.884280 ATTAATGCATTCTAACTAGCCCAC 57.116 37.500 16.86 0.00 0.00 4.61
2854 2888 6.649141 CGTATTAATGCATTCTAACTAGCCCA 59.351 38.462 16.86 0.00 0.00 5.36
2855 2889 6.402226 GCGTATTAATGCATTCTAACTAGCCC 60.402 42.308 16.86 0.00 37.58 5.19
2856 2890 6.369065 AGCGTATTAATGCATTCTAACTAGCC 59.631 38.462 16.86 0.00 40.32 3.93
2857 2891 7.352719 AGCGTATTAATGCATTCTAACTAGC 57.647 36.000 16.86 13.50 40.32 3.42
2962 2996 4.021192 GGAAGCATTGGGTCAAGATGAAAA 60.021 41.667 0.00 0.00 0.00 2.29
3048 3083 6.594937 GTGGTTACTTCCGTTAACATTCCATA 59.405 38.462 6.39 0.00 0.00 2.74
3055 3090 4.511527 TGTTGTGGTTACTTCCGTTAACA 58.488 39.130 6.39 0.00 0.00 2.41
3061 3096 2.356382 TGCTTTGTTGTGGTTACTTCCG 59.644 45.455 0.00 0.00 0.00 4.30
3080 3115 3.378427 GGTCTTCCCAAATAGACATGTGC 59.622 47.826 1.15 0.00 41.99 4.57
3136 3171 4.379652 GTGCAAACAATTGATGGGTCTTT 58.620 39.130 13.59 0.00 38.94 2.52
3155 3190 2.159393 TCAGCAATCATAAAAGGCGTGC 60.159 45.455 0.00 0.00 0.00 5.34
3282 4648 9.794685 GACCTGAAGAAAATCAATCTTAATTCC 57.205 33.333 0.00 0.00 37.26 3.01
3283 4649 9.794685 GGACCTGAAGAAAATCAATCTTAATTC 57.205 33.333 0.00 0.00 37.26 2.17
3290 4656 6.824305 TCAAGGACCTGAAGAAAATCAATC 57.176 37.500 0.00 0.00 0.00 2.67
3301 4667 5.014123 ACCAATGTAGAATCAAGGACCTGAA 59.986 40.000 0.00 0.00 0.00 3.02
3391 4757 9.936759 AAACTTGTAAGAATTCTTTTGGTTTGA 57.063 25.926 25.02 2.52 37.40 2.69
3441 4807 5.702349 ACTTGAATCTTCTCCAAAAGCTG 57.298 39.130 0.00 0.00 0.00 4.24
3549 4915 7.264221 TGTTGTCATTGCACTTCAAAGTTATT 58.736 30.769 0.00 0.00 38.34 1.40
3550 4916 6.804677 TGTTGTCATTGCACTTCAAAGTTAT 58.195 32.000 0.00 0.00 38.34 1.89
3551 4917 6.201226 TGTTGTCATTGCACTTCAAAGTTA 57.799 33.333 0.00 0.00 38.34 2.24
3552 4918 5.070770 TGTTGTCATTGCACTTCAAAGTT 57.929 34.783 0.00 0.00 38.34 2.66
3553 4919 4.717233 TGTTGTCATTGCACTTCAAAGT 57.283 36.364 0.00 0.00 38.34 2.66
3554 4920 6.919662 ACTATTGTTGTCATTGCACTTCAAAG 59.080 34.615 0.00 0.00 38.34 2.77
3594 4960 7.547227 ACTTTTCAGCAATACAATATGGTTCC 58.453 34.615 0.00 0.00 0.00 3.62
3647 5086 6.238456 CGCTTGGCAACTTTCATGATATCTTA 60.238 38.462 3.98 0.00 37.61 2.10
3662 5101 2.785713 TTCTTTTACCGCTTGGCAAC 57.214 45.000 0.00 0.00 35.53 4.17
3697 5136 4.732784 TCGAATTAAAACCTTGCATGCTC 58.267 39.130 20.33 2.08 0.00 4.26
3715 5154 7.597369 TGTTCGATTCTGAATAGTTTCTTCGAA 59.403 33.333 13.82 13.82 37.36 3.71
3735 5174 6.649141 ACAGAAGCAACATAATACTTGTTCGA 59.351 34.615 0.00 0.00 35.18 3.71
3737 5176 7.746475 GTGACAGAAGCAACATAATACTTGTTC 59.254 37.037 0.00 0.00 35.18 3.18
3750 5189 4.686554 ACGAATAGAAGTGACAGAAGCAAC 59.313 41.667 0.00 0.00 0.00 4.17
3771 5210 5.063312 TGAAATGTGTGAGTGCATATACACG 59.937 40.000 18.85 0.00 44.69 4.49
3859 5298 9.807921 AAGGAACATGGACTTATTAGAGAAAAA 57.192 29.630 0.00 0.00 0.00 1.94
3860 5299 9.449719 GAAGGAACATGGACTTATTAGAGAAAA 57.550 33.333 0.00 0.00 0.00 2.29
3967 5406 4.500603 AGCTTGACAAAAAGATGAGCAG 57.499 40.909 0.00 0.00 0.00 4.24
3993 5432 4.744795 AGCACCCAAAATAAACAACACA 57.255 36.364 0.00 0.00 0.00 3.72
4067 5506 5.293569 GTGGTGACATGTAAGCCATAGTAAC 59.706 44.000 9.95 0.00 46.14 2.50
4074 5513 0.321210 CCGTGGTGACATGTAAGCCA 60.321 55.000 9.95 10.19 46.26 4.75
4215 5654 9.732130 TTATGTCCAAATTAAAAGGGGAAAATG 57.268 29.630 0.00 0.00 0.00 2.32
4216 5655 9.733556 GTTATGTCCAAATTAAAAGGGGAAAAT 57.266 29.630 0.00 0.00 0.00 1.82
4217 5656 8.939932 AGTTATGTCCAAATTAAAAGGGGAAAA 58.060 29.630 0.00 0.00 0.00 2.29
4221 5660 9.214957 GAAAAGTTATGTCCAAATTAAAAGGGG 57.785 33.333 0.00 0.00 0.00 4.79
4284 5724 7.690637 CGTTGTGTCACATGGTTATTGTATTAC 59.309 37.037 6.48 0.00 0.00 1.89
4328 5769 8.784043 TCAGGTTTAATGAGTTCTTTTAAGCTC 58.216 33.333 7.69 0.00 32.21 4.09
4427 5877 6.303054 TGGAAAACATTTACATCACTCCTCA 58.697 36.000 0.00 0.00 0.00 3.86
4528 5978 8.712285 ATTGATTTTCTCCACTTTTGCATATG 57.288 30.769 0.00 0.00 0.00 1.78
4572 6022 4.576463 ACAGGAAAGATGAGACAACACAAC 59.424 41.667 0.00 0.00 0.00 3.32
4593 6043 2.229792 GATGCACAAAGGTTGAGGACA 58.770 47.619 0.00 0.00 0.00 4.02
4596 6046 1.466167 CTCGATGCACAAAGGTTGAGG 59.534 52.381 0.00 0.00 0.00 3.86
4603 6053 1.904144 CAATGCCTCGATGCACAAAG 58.096 50.000 17.87 4.55 45.48 2.77
4611 6061 2.877168 GAGAGAAATGCAATGCCTCGAT 59.123 45.455 1.53 0.00 32.79 3.59
4632 6082 2.428890 TGTAAAACCAAGGGTGCAAGTG 59.571 45.455 0.00 0.00 35.34 3.16
4675 6125 6.096141 CAGTATAGAAGTGTGGATGTGAGTCT 59.904 42.308 0.00 0.00 0.00 3.24
4693 6143 3.632604 ACATCACCGTCCAGTCAGTATAG 59.367 47.826 0.00 0.00 0.00 1.31
4781 6231 8.877808 TCTCTGTTGCATATATGTTCACTTAG 57.122 34.615 14.14 9.43 0.00 2.18
4783 6233 7.559486 TCTCTCTGTTGCATATATGTTCACTT 58.441 34.615 14.14 0.00 0.00 3.16
4788 6238 7.071069 TCCATCTCTCTGTTGCATATATGTT 57.929 36.000 14.14 0.00 0.00 2.71
4952 6402 6.567602 AGAAAGATGCAACTCCTACCTTAT 57.432 37.500 0.00 0.00 0.00 1.73
5001 6451 7.665559 ACTTAAGGAGTAAAGCATTGTCATGAA 59.334 33.333 7.53 0.00 36.65 2.57
5030 6480 4.022068 ACACCATTTTGAGCCATTGTAGTG 60.022 41.667 0.00 0.00 0.00 2.74
5091 6541 6.651975 AAGGACTAGAAACCCGACTATATG 57.348 41.667 0.00 0.00 0.00 1.78
5257 6707 1.070601 ACATGGTTTGCCTTTTCTGCC 59.929 47.619 0.00 0.00 35.27 4.85
5410 6860 2.495669 GTTTGCTTTTATGGGGCTGCTA 59.504 45.455 0.00 0.00 0.00 3.49
5412 6862 1.675714 GGTTTGCTTTTATGGGGCTGC 60.676 52.381 0.00 0.00 0.00 5.25
5434 6884 1.607148 GCCATGGTAATTAACTCGGGC 59.393 52.381 14.67 12.63 32.82 6.13
5646 7096 2.029666 GATGGCTCCATCGACCCG 59.970 66.667 12.62 0.00 42.55 5.28
5742 7192 1.963515 CACCAACTCCCTTTCCCTTTG 59.036 52.381 0.00 0.00 0.00 2.77
5743 7193 1.573857 ACACCAACTCCCTTTCCCTTT 59.426 47.619 0.00 0.00 0.00 3.11
5773 7223 3.499338 ACACCAAGATTGCAGAATCCAA 58.501 40.909 0.00 0.00 39.14 3.53
5780 7230 4.993584 CCTAGCTATACACCAAGATTGCAG 59.006 45.833 0.00 0.00 0.00 4.41
5820 7270 2.076100 GTCCCCGTTTAACTAAACCCG 58.924 52.381 6.74 0.00 41.81 5.28
5867 7317 6.238416 GAATGACTTATTCACCGAGACGGAG 61.238 48.000 16.99 9.14 45.73 4.63
5868 7318 4.439700 GAATGACTTATTCACCGAGACGGA 60.440 45.833 16.99 0.00 45.73 4.69
5869 7319 3.797256 GAATGACTTATTCACCGAGACGG 59.203 47.826 8.67 8.67 43.79 4.79
5870 7320 3.482472 CGAATGACTTATTCACCGAGACG 59.518 47.826 0.00 0.00 44.42 4.18
5871 7321 3.243177 GCGAATGACTTATTCACCGAGAC 59.757 47.826 0.00 0.00 44.42 3.36
5872 7322 3.444916 GCGAATGACTTATTCACCGAGA 58.555 45.455 0.00 0.00 44.42 4.04
5873 7323 2.216488 CGCGAATGACTTATTCACCGAG 59.784 50.000 0.00 0.00 44.42 4.63
5874 7324 2.190161 CGCGAATGACTTATTCACCGA 58.810 47.619 0.00 0.00 44.42 4.69
5875 7325 1.924524 ACGCGAATGACTTATTCACCG 59.075 47.619 15.93 0.00 44.42 4.94
5876 7326 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
5877 7327 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
5878 7328 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
5879 7329 6.360148 CCTAGAACTACGCGAATGACTTATTC 59.640 42.308 15.93 3.24 41.46 1.75
5880 7330 6.183360 ACCTAGAACTACGCGAATGACTTATT 60.183 38.462 15.93 0.00 0.00 1.40
5881 7331 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
5882 7332 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
5883 7333 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
5884 7334 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
5885 7335 3.361414 GACCTAGAACTACGCGAATGAC 58.639 50.000 15.93 0.66 0.00 3.06
5886 7336 2.031314 CGACCTAGAACTACGCGAATGA 59.969 50.000 15.93 0.00 0.00 2.57
5887 7337 2.031314 TCGACCTAGAACTACGCGAATG 59.969 50.000 15.93 4.47 0.00 2.67
5888 7338 2.283298 TCGACCTAGAACTACGCGAAT 58.717 47.619 15.93 0.00 0.00 3.34
5889 7339 1.662629 CTCGACCTAGAACTACGCGAA 59.337 52.381 15.93 0.00 0.00 4.70
5890 7340 1.284657 CTCGACCTAGAACTACGCGA 58.715 55.000 15.93 0.00 0.00 5.87
5891 7341 0.304098 CCTCGACCTAGAACTACGCG 59.696 60.000 3.53 3.53 0.00 6.01
5892 7342 1.661341 TCCTCGACCTAGAACTACGC 58.339 55.000 0.00 0.00 0.00 4.42
5893 7343 4.897025 AAATCCTCGACCTAGAACTACG 57.103 45.455 0.00 0.00 0.00 3.51
5894 7344 7.332213 AGTTAAATCCTCGACCTAGAACTAC 57.668 40.000 0.00 0.00 0.00 2.73
5895 7345 9.638176 AATAGTTAAATCCTCGACCTAGAACTA 57.362 33.333 0.00 0.00 32.97 2.24
5896 7346 8.536340 AATAGTTAAATCCTCGACCTAGAACT 57.464 34.615 0.00 0.00 0.00 3.01
5902 7352 9.901172 ACATTTAAATAGTTAAATCCTCGACCT 57.099 29.630 15.94 0.00 44.50 3.85
5903 7353 9.931210 CACATTTAAATAGTTAAATCCTCGACC 57.069 33.333 15.94 0.00 44.50 4.79
6012 7462 9.071276 AGGTCATCGATTTGAGCAATTAAATAT 57.929 29.630 17.73 0.00 44.58 1.28
6013 7463 8.450578 AGGTCATCGATTTGAGCAATTAAATA 57.549 30.769 17.73 0.00 44.58 1.40
6014 7464 7.338800 AGGTCATCGATTTGAGCAATTAAAT 57.661 32.000 17.73 0.00 44.58 1.40
6015 7465 6.757897 AGGTCATCGATTTGAGCAATTAAA 57.242 33.333 17.73 0.00 44.58 1.52
6016 7466 7.272244 TCTAGGTCATCGATTTGAGCAATTAA 58.728 34.615 17.73 0.00 44.58 1.40
6017 7467 6.816136 TCTAGGTCATCGATTTGAGCAATTA 58.184 36.000 17.73 4.05 44.58 1.40
6018 7468 5.674525 TCTAGGTCATCGATTTGAGCAATT 58.325 37.500 17.73 3.20 44.58 2.32
6019 7469 5.282055 TCTAGGTCATCGATTTGAGCAAT 57.718 39.130 17.73 3.80 44.58 3.56
6020 7470 4.736126 TCTAGGTCATCGATTTGAGCAA 57.264 40.909 17.73 3.36 44.58 3.91
6021 7471 4.160439 AGTTCTAGGTCATCGATTTGAGCA 59.840 41.667 17.73 5.86 44.58 4.26
6022 7472 4.688021 AGTTCTAGGTCATCGATTTGAGC 58.312 43.478 9.64 9.64 42.94 4.26
6023 7473 5.910166 CGTAGTTCTAGGTCATCGATTTGAG 59.090 44.000 0.00 0.00 0.00 3.02
6024 7474 5.732528 GCGTAGTTCTAGGTCATCGATTTGA 60.733 44.000 0.00 0.00 0.00 2.69
6025 7475 4.441415 GCGTAGTTCTAGGTCATCGATTTG 59.559 45.833 0.00 0.00 0.00 2.32
6026 7476 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
6027 7477 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
6028 7478 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
6029 7479 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
6030 7480 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
6031 7481 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
6032 7482 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
6033 7483 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
6034 7484 3.687572 TCATTCGCGTAGTTCTAGGTC 57.312 47.619 5.77 0.00 0.00 3.85
6035 7485 4.097437 TCATTCATTCGCGTAGTTCTAGGT 59.903 41.667 5.77 0.00 0.00 3.08
6036 7486 4.441415 GTCATTCATTCGCGTAGTTCTAGG 59.559 45.833 5.77 0.00 0.00 3.02
6037 7487 5.274718 AGTCATTCATTCGCGTAGTTCTAG 58.725 41.667 5.77 0.00 0.00 2.43
6038 7488 5.244785 AGTCATTCATTCGCGTAGTTCTA 57.755 39.130 5.77 0.00 0.00 2.10
6039 7489 4.111375 AGTCATTCATTCGCGTAGTTCT 57.889 40.909 5.77 0.00 0.00 3.01
6040 7490 4.842139 AAGTCATTCATTCGCGTAGTTC 57.158 40.909 5.77 0.00 0.00 3.01
6041 7491 6.533723 TGAATAAGTCATTCATTCGCGTAGTT 59.466 34.615 5.77 0.00 46.48 2.24
6042 7492 6.040247 TGAATAAGTCATTCATTCGCGTAGT 58.960 36.000 5.77 0.00 46.48 2.73
6043 7493 6.510746 TGAATAAGTCATTCATTCGCGTAG 57.489 37.500 5.77 0.00 46.48 3.51
6052 7502 5.655090 TCCGTCTAGGTGAATAAGTCATTCA 59.345 40.000 0.00 0.00 43.86 2.57
6053 7503 6.145338 TCCGTCTAGGTGAATAAGTCATTC 57.855 41.667 0.00 0.00 40.27 2.67
6054 7504 5.069251 CCTCCGTCTAGGTGAATAAGTCATT 59.931 44.000 0.00 0.00 38.90 2.57
6055 7505 4.585162 CCTCCGTCTAGGTGAATAAGTCAT 59.415 45.833 0.00 0.00 38.90 3.06
6056 7506 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
6057 7507 4.571372 CCTCCGTCTAGGTGAATAAGTC 57.429 50.000 0.00 0.00 41.99 3.01
6067 7517 5.568392 ACCATTATACTACCTCCGTCTAGG 58.432 45.833 0.00 0.00 42.82 3.02
6068 7518 7.521871 AAACCATTATACTACCTCCGTCTAG 57.478 40.000 0.00 0.00 0.00 2.43
6069 7519 7.685155 GCAAAACCATTATACTACCTCCGTCTA 60.685 40.741 0.00 0.00 0.00 2.59
6070 7520 6.579865 CAAAACCATTATACTACCTCCGTCT 58.420 40.000 0.00 0.00 0.00 4.18
6071 7521 5.235831 GCAAAACCATTATACTACCTCCGTC 59.764 44.000 0.00 0.00 0.00 4.79
6072 7522 5.104652 AGCAAAACCATTATACTACCTCCGT 60.105 40.000 0.00 0.00 0.00 4.69
6073 7523 5.236478 CAGCAAAACCATTATACTACCTCCG 59.764 44.000 0.00 0.00 0.00 4.63
6074 7524 5.008712 GCAGCAAAACCATTATACTACCTCC 59.991 44.000 0.00 0.00 0.00 4.30
6075 7525 5.277345 CGCAGCAAAACCATTATACTACCTC 60.277 44.000 0.00 0.00 0.00 3.85
6076 7526 4.574828 CGCAGCAAAACCATTATACTACCT 59.425 41.667 0.00 0.00 0.00 3.08
6077 7527 4.334481 ACGCAGCAAAACCATTATACTACC 59.666 41.667 0.00 0.00 0.00 3.18
6078 7528 5.479716 ACGCAGCAAAACCATTATACTAC 57.520 39.130 0.00 0.00 0.00 2.73
6079 7529 5.413213 ACAACGCAGCAAAACCATTATACTA 59.587 36.000 0.00 0.00 0.00 1.82
6080 7530 4.217550 ACAACGCAGCAAAACCATTATACT 59.782 37.500 0.00 0.00 0.00 2.12
6081 7531 4.481463 ACAACGCAGCAAAACCATTATAC 58.519 39.130 0.00 0.00 0.00 1.47
6130 7580 7.817641 ACTTCCCGATTTTCTTTCTACATTTC 58.182 34.615 0.00 0.00 0.00 2.17
6147 7597 3.623848 CATGTGTTGGACTTCCCGA 57.376 52.632 0.00 0.00 37.93 5.14
6166 7616 3.438360 CACATTCGAATTAAAGCCCAGC 58.562 45.455 8.21 0.00 0.00 4.85
6209 7659 2.452600 AAAGAGGTCCAAAGTGGCAA 57.547 45.000 0.00 0.00 37.47 4.52
6254 7704 9.490379 CGCTCTATAGGTCCAGTTAAAAATATT 57.510 33.333 0.00 0.00 0.00 1.28
6255 7705 8.867097 TCGCTCTATAGGTCCAGTTAAAAATAT 58.133 33.333 0.00 0.00 0.00 1.28
6257 7707 7.120923 TCGCTCTATAGGTCCAGTTAAAAAT 57.879 36.000 0.00 0.00 0.00 1.82
6282 7732 6.379133 ACCGTTACTCTTTTCTTTCCCTTTTT 59.621 34.615 0.00 0.00 0.00 1.94
6345 7795 4.560136 TTGATTAGTGCAAAGCGTGAAA 57.440 36.364 0.00 0.00 0.00 2.69
6419 7869 7.496529 ACATATAACCCGATGTCTGAATTTG 57.503 36.000 0.00 0.00 30.32 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.