Multiple sequence alignment - TraesCS5A01G503400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G503400 chr5A 100.000 3804 0 0 1 3804 668273058 668269255 0.000000e+00 7025
1 TraesCS5A01G503400 chr5A 92.151 1911 106 22 1916 3804 668225722 668223834 0.000000e+00 2658
2 TraesCS5A01G503400 chr5A 89.663 2109 151 25 932 2998 668580713 668578630 0.000000e+00 2625
3 TraesCS5A01G503400 chr5A 87.215 1095 91 26 1935 3006 668769325 668770393 0.000000e+00 1201
4 TraesCS5A01G503400 chr5A 85.291 1047 87 27 935 1937 668226756 668225733 0.000000e+00 1018
5 TraesCS5A01G503400 chr5A 87.333 900 63 18 959 1822 668767518 668768402 0.000000e+00 983
6 TraesCS5A01G503400 chr5A 95.670 485 18 3 6 487 333432397 333431913 0.000000e+00 776
7 TraesCS5A01G503400 chr5A 95.306 490 20 3 1 487 534361274 534360785 0.000000e+00 774
8 TraesCS5A01G503400 chr5A 94.104 441 26 0 496 936 502601040 502601480 0.000000e+00 671
9 TraesCS5A01G503400 chr5A 87.234 235 22 6 3559 3787 7104560 7104792 1.050000e-65 261
10 TraesCS5A01G503400 chr5A 92.248 129 10 0 3005 3133 668770432 668770560 2.330000e-42 183
11 TraesCS5A01G503400 chr5A 80.392 153 25 4 3560 3709 109278438 109278588 1.120000e-20 111
12 TraesCS5A01G503400 chr4D 88.153 2085 163 30 948 2960 487120873 487118801 0.000000e+00 2405
13 TraesCS5A01G503400 chr4D 86.335 1427 121 39 948 2343 487230129 487228746 0.000000e+00 1487
14 TraesCS5A01G503400 chr4D 89.854 1094 78 19 1930 3006 487344186 487343109 0.000000e+00 1375
15 TraesCS5A01G503400 chr4D 88.462 988 61 15 948 1905 487345699 487344735 0.000000e+00 1144
16 TraesCS5A01G503400 chr4D 88.052 996 74 18 953 1905 487291126 487290133 0.000000e+00 1138
17 TraesCS5A01G503400 chr4D 89.467 807 57 9 1570 2350 487296196 487295392 0.000000e+00 994
18 TraesCS5A01G503400 chr4D 93.922 510 24 2 2499 3006 487228676 487228172 0.000000e+00 763
19 TraesCS5A01G503400 chr4D 88.456 641 56 9 2373 3006 487295400 487294771 0.000000e+00 758
20 TraesCS5A01G503400 chr4D 91.532 496 30 9 2508 3001 487288866 487288381 0.000000e+00 673
21 TraesCS5A01G503400 chr4D 86.526 616 55 17 1930 2525 487289585 487288978 0.000000e+00 652
22 TraesCS5A01G503400 chr4D 90.300 433 34 6 3134 3563 487217414 487216987 9.230000e-156 560
23 TraesCS5A01G503400 chr4D 89.327 431 39 4 3134 3563 487342751 487342327 5.590000e-148 534
24 TraesCS5A01G503400 chr4D 84.980 253 18 16 3549 3798 347463695 347463460 4.910000e-59 239
25 TraesCS5A01G503400 chr4D 89.231 130 13 1 3005 3133 487288337 487288208 1.090000e-35 161
26 TraesCS5A01G503400 chr4B 86.512 1987 140 57 935 2854 622335000 622333075 0.000000e+00 2067
27 TraesCS5A01G503400 chr4B 86.128 1002 88 26 948 1905 622437626 622436632 0.000000e+00 1033
28 TraesCS5A01G503400 chr4B 87.009 916 73 22 1930 2824 622477029 622476139 0.000000e+00 990
29 TraesCS5A01G503400 chr4B 85.126 995 94 21 948 1905 622478553 622477576 0.000000e+00 968
30 TraesCS5A01G503400 chr4B 90.698 387 34 1 3177 3563 622433928 622433544 7.290000e-142 514
31 TraesCS5A01G503400 chr4B 90.458 262 23 1 1665 1926 622615566 622615307 1.010000e-90 344
32 TraesCS5A01G503400 chrUn 87.454 1092 82 28 1930 2998 60348276 60347217 0.000000e+00 1206
33 TraesCS5A01G503400 chrUn 87.041 980 74 25 2049 3006 363200045 363200993 0.000000e+00 1057
34 TraesCS5A01G503400 chrUn 87.153 973 70 28 2049 2998 60289967 60290907 0.000000e+00 1053
35 TraesCS5A01G503400 chrUn 86.128 1002 88 26 948 1905 60287899 60288893 0.000000e+00 1033
36 TraesCS5A01G503400 chrUn 85.828 1002 91 24 948 1905 60349819 60348825 0.000000e+00 1016
37 TraesCS5A01G503400 chrUn 90.698 430 38 1 3134 3563 453468716 453468289 4.260000e-159 571
38 TraesCS5A01G503400 chrUn 90.465 430 39 1 3134 3563 363201209 363201636 1.980000e-157 566
39 TraesCS5A01G503400 chrUn 90.698 387 34 1 3177 3563 338511280 338511664 7.290000e-142 514
40 TraesCS5A01G503400 chrUn 85.542 415 34 7 3134 3548 60329214 60328826 9.830000e-111 411
41 TraesCS5A01G503400 chrUn 85.542 415 34 7 3134 3548 60360482 60360094 9.830000e-111 411
42 TraesCS5A01G503400 chrUn 82.948 346 41 11 597 940 214320622 214320951 2.870000e-76 296
43 TraesCS5A01G503400 chrUn 93.077 130 8 1 3005 3133 60277846 60277975 5.020000e-44 189
44 TraesCS5A01G503400 chrUn 93.077 130 8 1 3005 3133 60329390 60329261 5.020000e-44 189
45 TraesCS5A01G503400 chrUn 93.077 130 8 1 3005 3133 60360658 60360529 5.020000e-44 189
46 TraesCS5A01G503400 chrUn 91.339 127 11 0 3007 3133 363201035 363201161 1.400000e-39 174
47 TraesCS5A01G503400 chrUn 91.339 127 11 0 3007 3133 453468890 453468764 1.400000e-39 174
48 TraesCS5A01G503400 chr7A 95.510 490 19 3 1 487 77166193 77165704 0.000000e+00 780
49 TraesCS5A01G503400 chr7A 95.102 490 21 3 1 487 11786167 11785678 0.000000e+00 769
50 TraesCS5A01G503400 chr7A 94.331 441 20 4 498 937 692508450 692508886 0.000000e+00 671
51 TraesCS5A01G503400 chr4A 95.510 490 19 3 1 487 40448779 40449268 0.000000e+00 780
52 TraesCS5A01G503400 chr4A 93.394 439 28 1 496 934 583727345 583726908 0.000000e+00 649
53 TraesCS5A01G503400 chr2A 95.316 491 19 4 1 487 744077972 744077482 0.000000e+00 776
54 TraesCS5A01G503400 chr2A 95.473 486 19 3 5 487 591263174 591263659 0.000000e+00 773
55 TraesCS5A01G503400 chr2A 94.582 443 22 2 496 937 750534270 750534711 0.000000e+00 684
56 TraesCS5A01G503400 chr2A 94.118 442 25 1 496 936 726746870 726747311 0.000000e+00 671
57 TraesCS5A01G503400 chr2A 93.679 443 27 1 496 938 691663269 691662828 0.000000e+00 662
58 TraesCS5A01G503400 chr2A 93.439 442 26 3 496 936 747256131 747255692 0.000000e+00 652
59 TraesCS5A01G503400 chr6A 95.473 486 20 2 1 484 549361231 549360746 0.000000e+00 774
60 TraesCS5A01G503400 chr6A 94.077 439 26 0 496 934 44999698 45000136 0.000000e+00 667
61 TraesCS5A01G503400 chr1A 95.102 490 21 3 1 487 536668801 536669290 0.000000e+00 769
62 TraesCS5A01G503400 chr1A 94.292 438 23 2 497 934 107531697 107531262 0.000000e+00 669
63 TraesCS5A01G503400 chr7B 87.665 227 26 2 3564 3788 202842430 202842204 2.910000e-66 263
64 TraesCS5A01G503400 chr5B 87.179 234 21 8 3559 3787 9221158 9221387 1.360000e-64 257
65 TraesCS5A01G503400 chr3B 86.638 232 25 6 3559 3787 726603763 726603991 6.310000e-63 252
66 TraesCS5A01G503400 chr7D 94.400 125 7 0 3589 3713 226459644 226459768 3.880000e-45 193
67 TraesCS5A01G503400 chr2B 80.851 235 17 13 3558 3787 787815773 787815562 3.930000e-35 159
68 TraesCS5A01G503400 chr5D 79.592 147 25 4 3566 3709 105102657 105102801 2.420000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G503400 chr5A 668269255 668273058 3803 True 7025.000000 7025 100.000000 1 3804 1 chr5A.!!$R3 3803
1 TraesCS5A01G503400 chr5A 668578630 668580713 2083 True 2625.000000 2625 89.663000 932 2998 1 chr5A.!!$R4 2066
2 TraesCS5A01G503400 chr5A 668223834 668226756 2922 True 1838.000000 2658 88.721000 935 3804 2 chr5A.!!$R5 2869
3 TraesCS5A01G503400 chr5A 668767518 668770560 3042 False 789.000000 1201 88.932000 959 3133 3 chr5A.!!$F4 2174
4 TraesCS5A01G503400 chr4D 487118801 487120873 2072 True 2405.000000 2405 88.153000 948 2960 1 chr4D.!!$R2 2012
5 TraesCS5A01G503400 chr4D 487228172 487230129 1957 True 1125.000000 1487 90.128500 948 3006 2 chr4D.!!$R4 2058
6 TraesCS5A01G503400 chr4D 487342327 487345699 3372 True 1017.666667 1375 89.214333 948 3563 3 chr4D.!!$R6 2615
7 TraesCS5A01G503400 chr4D 487288208 487296196 7988 True 729.333333 1138 88.877333 953 3133 6 chr4D.!!$R5 2180
8 TraesCS5A01G503400 chr4B 622333075 622335000 1925 True 2067.000000 2067 86.512000 935 2854 1 chr4B.!!$R1 1919
9 TraesCS5A01G503400 chr4B 622476139 622478553 2414 True 979.000000 990 86.067500 948 2824 2 chr4B.!!$R4 1876
10 TraesCS5A01G503400 chr4B 622433544 622437626 4082 True 773.500000 1033 88.413000 948 3563 2 chr4B.!!$R3 2615
11 TraesCS5A01G503400 chrUn 60347217 60349819 2602 True 1111.000000 1206 86.641000 948 2998 2 chrUn.!!$R2 2050
12 TraesCS5A01G503400 chrUn 60287899 60290907 3008 False 1043.000000 1053 86.640500 948 2998 2 chrUn.!!$F4 2050
13 TraesCS5A01G503400 chrUn 363200045 363201636 1591 False 599.000000 1057 89.615000 2049 3563 3 chrUn.!!$F5 1514
14 TraesCS5A01G503400 chrUn 453468289 453468890 601 True 372.500000 571 91.018500 3007 3563 2 chrUn.!!$R4 556
15 TraesCS5A01G503400 chrUn 60328826 60329390 564 True 300.000000 411 89.309500 3005 3548 2 chrUn.!!$R1 543
16 TraesCS5A01G503400 chrUn 60360094 60360658 564 True 300.000000 411 89.309500 3005 3548 2 chrUn.!!$R3 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 872 0.094730 CGCGACTGGACCGATTTTTC 59.905 55.0 0.00 0.0 0.0 2.29 F
872 873 0.094730 GCGACTGGACCGATTTTTCG 59.905 55.0 0.00 0.0 0.0 3.46 F
965 5084 0.107703 CTAGAACTTGGGCGGCATGA 60.108 55.0 12.47 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 6040 0.246635 GTTCAGCTCCTCTGGCGTAA 59.753 55.000 0.0 0.0 43.06 3.18 R
2781 8481 0.381801 GGGCTTGTTCATATGTGCCG 59.618 55.000 1.9 0.0 41.08 5.69 R
3059 8953 6.958192 TCAATACCAAGAAGTTACTAGGGAGT 59.042 38.462 0.0 0.0 39.92 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.512515 GTGCTGCCGGACCATCTC 60.513 66.667 5.05 0.00 0.00 2.75
20 21 4.147449 TGCTGCCGGACCATCTCG 62.147 66.667 5.05 0.00 0.00 4.04
21 22 4.148825 GCTGCCGGACCATCTCGT 62.149 66.667 5.05 0.00 0.00 4.18
22 23 2.105128 CTGCCGGACCATCTCGTC 59.895 66.667 5.05 0.00 0.00 4.20
23 24 3.758088 CTGCCGGACCATCTCGTCG 62.758 68.421 5.05 0.00 33.30 5.12
25 26 4.907034 CCGGACCATCTCGTCGCG 62.907 72.222 0.00 0.00 33.30 5.87
26 27 4.907034 CGGACCATCTCGTCGCGG 62.907 72.222 6.13 0.00 33.30 6.46
28 29 2.024871 GACCATCTCGTCGCGGAG 59.975 66.667 6.13 6.10 35.32 4.63
29 30 3.471244 GACCATCTCGTCGCGGAGG 62.471 68.421 6.13 0.00 34.74 4.30
30 31 3.518998 CCATCTCGTCGCGGAGGT 61.519 66.667 6.13 0.00 34.74 3.85
32 33 1.280142 CATCTCGTCGCGGAGGTAG 59.720 63.158 6.13 0.00 34.74 3.18
34 35 1.159098 ATCTCGTCGCGGAGGTAGTC 61.159 60.000 6.13 0.00 34.74 2.59
35 36 3.152937 CTCGTCGCGGAGGTAGTCG 62.153 68.421 6.13 0.00 0.00 4.18
37 38 2.402787 GTCGCGGAGGTAGTCGTC 59.597 66.667 6.13 0.00 0.00 4.20
38 39 2.821366 TCGCGGAGGTAGTCGTCC 60.821 66.667 6.13 0.00 42.98 4.79
39 40 3.885521 CGCGGAGGTAGTCGTCCC 61.886 72.222 0.00 0.00 43.35 4.46
40 41 3.885521 GCGGAGGTAGTCGTCCCG 61.886 72.222 0.00 0.00 43.35 5.14
42 43 3.885521 GGAGGTAGTCGTCCCGCG 61.886 72.222 0.00 0.00 41.25 6.46
43 44 4.549516 GAGGTAGTCGTCCCGCGC 62.550 72.222 0.00 0.00 41.07 6.86
70 71 3.437795 GGCGTCCTCGTCGGAGAA 61.438 66.667 0.00 0.00 44.20 2.87
71 72 2.100603 GCGTCCTCGTCGGAGAAG 59.899 66.667 0.00 0.00 44.20 2.85
72 73 2.100603 CGTCCTCGTCGGAGAAGC 59.899 66.667 0.00 0.00 44.20 3.86
73 74 2.490685 GTCCTCGTCGGAGAAGCC 59.509 66.667 0.00 0.00 44.20 4.35
74 75 2.035155 TCCTCGTCGGAGAAGCCA 59.965 61.111 0.00 0.00 43.27 4.75
75 76 1.379977 TCCTCGTCGGAGAAGCCAT 60.380 57.895 0.00 0.00 43.27 4.40
76 77 1.227089 CCTCGTCGGAGAAGCCATG 60.227 63.158 0.00 0.00 43.27 3.66
77 78 1.880340 CTCGTCGGAGAAGCCATGC 60.880 63.158 0.00 0.00 43.27 4.06
78 79 2.892425 CGTCGGAGAAGCCATGCC 60.892 66.667 0.00 0.00 39.69 4.40
79 80 2.892425 GTCGGAGAAGCCATGCCG 60.892 66.667 0.00 0.00 44.83 5.69
80 81 4.161295 TCGGAGAAGCCATGCCGG 62.161 66.667 0.00 0.00 43.71 6.13
89 90 2.348998 CCATGCCGGGCTATCTCC 59.651 66.667 21.46 0.00 0.00 3.71
90 91 2.219875 CCATGCCGGGCTATCTCCT 61.220 63.158 21.46 0.00 0.00 3.69
91 92 1.294780 CATGCCGGGCTATCTCCTC 59.705 63.158 21.46 0.00 0.00 3.71
92 93 2.279069 ATGCCGGGCTATCTCCTCG 61.279 63.158 21.46 0.00 0.00 4.63
94 95 1.602888 GCCGGGCTATCTCCTCGTA 60.603 63.158 12.87 0.00 0.00 3.43
95 96 1.864725 GCCGGGCTATCTCCTCGTAC 61.865 65.000 12.87 0.00 0.00 3.67
96 97 0.250814 CCGGGCTATCTCCTCGTACT 60.251 60.000 0.00 0.00 0.00 2.73
97 98 1.158434 CGGGCTATCTCCTCGTACTC 58.842 60.000 0.00 0.00 0.00 2.59
98 99 1.536940 GGGCTATCTCCTCGTACTCC 58.463 60.000 0.00 0.00 0.00 3.85
99 100 1.202903 GGGCTATCTCCTCGTACTCCA 60.203 57.143 0.00 0.00 0.00 3.86
100 101 1.881324 GGCTATCTCCTCGTACTCCAC 59.119 57.143 0.00 0.00 0.00 4.02
133 134 4.735132 CGGCTTGGGCTCGACGAA 62.735 66.667 0.00 0.00 38.73 3.85
134 135 2.815647 GGCTTGGGCTCGACGAAG 60.816 66.667 0.00 0.00 38.73 3.79
135 136 2.261671 GCTTGGGCTCGACGAAGA 59.738 61.111 0.00 0.00 35.22 2.87
136 137 2.095252 GCTTGGGCTCGACGAAGAC 61.095 63.158 0.00 0.00 35.22 3.01
145 146 3.179939 GACGAAGACGAAGCGGCC 61.180 66.667 0.00 0.00 42.66 6.13
148 149 4.736896 GAAGACGAAGCGGCCGGT 62.737 66.667 26.97 26.97 34.11 5.28
162 163 2.928396 CGGTGGGGGAGGTGTTCT 60.928 66.667 0.00 0.00 0.00 3.01
163 164 2.955881 CGGTGGGGGAGGTGTTCTC 61.956 68.421 0.00 0.00 41.71 2.87
164 165 2.663196 GTGGGGGAGGTGTTCTCG 59.337 66.667 0.00 0.00 43.34 4.04
171 172 1.086634 GGAGGTGTTCTCGCTGATGC 61.087 60.000 0.00 0.00 43.34 3.91
226 227 4.479993 CTCTGGGGCTCCGGCTTG 62.480 72.222 6.56 0.00 39.31 4.01
228 229 4.785453 CTGGGGCTCCGGCTTGAC 62.785 72.222 0.00 0.00 38.73 3.18
254 255 3.791586 GGTGGAGGCAGGAGGAGC 61.792 72.222 0.00 0.00 0.00 4.70
273 274 4.816984 GCCGGACGAGGAGGAGGA 62.817 72.222 5.05 0.00 0.00 3.71
275 276 2.829458 CGGACGAGGAGGAGGACC 60.829 72.222 0.00 0.00 0.00 4.46
277 278 2.442458 GACGAGGAGGAGGACCCC 60.442 72.222 0.00 0.00 36.73 4.95
278 279 4.077180 ACGAGGAGGAGGACCCCC 62.077 72.222 0.00 0.00 36.73 5.40
295 296 4.899239 CCGGTCTCCATGCGCCTC 62.899 72.222 4.18 0.00 0.00 4.70
298 299 4.899239 GTCTCCATGCGCCTCGGG 62.899 72.222 4.18 0.41 0.00 5.14
308 309 3.228017 GCCTCGGGGTCTAGGAGC 61.228 72.222 1.62 0.00 34.58 4.70
310 311 1.075896 CCTCGGGGTCTAGGAGCTT 60.076 63.158 0.00 0.00 34.58 3.74
313 314 2.134933 CGGGGTCTAGGAGCTTCCC 61.135 68.421 0.00 0.00 37.19 3.97
314 315 2.134933 GGGGTCTAGGAGCTTCCCG 61.135 68.421 0.00 0.00 37.19 5.14
315 316 2.134933 GGGTCTAGGAGCTTCCCGG 61.135 68.421 0.00 0.00 37.19 5.73
316 317 2.798364 GGTCTAGGAGCTTCCCGGC 61.798 68.421 0.00 0.00 37.19 6.13
317 318 2.833582 TCTAGGAGCTTCCCGGCG 60.834 66.667 0.00 0.00 37.19 6.46
337 338 2.663196 GTGTGAAGGACGGGGGAG 59.337 66.667 0.00 0.00 0.00 4.30
338 339 3.319198 TGTGAAGGACGGGGGAGC 61.319 66.667 0.00 0.00 0.00 4.70
339 340 4.452733 GTGAAGGACGGGGGAGCG 62.453 72.222 0.00 0.00 0.00 5.03
349 350 4.828296 GGGGAGCGGGGTACTCGA 62.828 72.222 12.01 0.00 34.87 4.04
350 351 3.217743 GGGAGCGGGGTACTCGAG 61.218 72.222 11.84 11.84 34.87 4.04
352 353 3.902086 GAGCGGGGTACTCGAGGC 61.902 72.222 18.41 9.21 0.00 4.70
357 358 4.549516 GGGTACTCGAGGCGCGAC 62.550 72.222 18.41 7.34 45.59 5.19
359 360 4.157958 GTACTCGAGGCGCGACGT 62.158 66.667 18.41 14.06 45.59 4.34
360 361 4.156622 TACTCGAGGCGCGACGTG 62.157 66.667 18.41 19.80 45.59 4.49
375 376 3.499737 GTGTTGCCGCCCTCGATG 61.500 66.667 0.00 0.00 38.10 3.84
376 377 4.015406 TGTTGCCGCCCTCGATGT 62.015 61.111 0.00 0.00 38.10 3.06
377 378 2.185867 GTTGCCGCCCTCGATGTA 59.814 61.111 0.00 0.00 38.10 2.29
378 379 2.171725 GTTGCCGCCCTCGATGTAC 61.172 63.158 0.00 0.00 38.10 2.90
379 380 2.355986 TTGCCGCCCTCGATGTACT 61.356 57.895 0.00 0.00 38.10 2.73
380 381 2.027751 GCCGCCCTCGATGTACTC 59.972 66.667 0.00 0.00 38.10 2.59
390 391 1.359475 GATGTACTCGAGGACGGCC 59.641 63.158 22.57 0.00 40.21 6.13
399 400 4.003788 AGGACGGCCTCCAACGTG 62.004 66.667 2.12 0.00 42.19 4.49
472 473 3.499737 GCTCGATGCCGTTGGTGG 61.500 66.667 0.00 0.00 37.05 4.61
483 484 4.704833 TTGGTGGCCTCGAGCTGC 62.705 66.667 6.99 5.97 43.05 5.25
503 504 4.521062 GAGGGCTCAGCGCGTCAT 62.521 66.667 8.43 0.00 46.18 3.06
504 505 3.138930 GAGGGCTCAGCGCGTCATA 62.139 63.158 8.43 0.00 46.18 2.15
505 506 2.029666 GGGCTCAGCGCGTCATAT 59.970 61.111 8.43 0.00 40.44 1.78
506 507 1.179174 AGGGCTCAGCGCGTCATATA 61.179 55.000 8.43 0.00 46.18 0.86
507 508 0.108615 GGGCTCAGCGCGTCATATAT 60.109 55.000 8.43 0.00 40.44 0.86
508 509 1.134367 GGGCTCAGCGCGTCATATATA 59.866 52.381 8.43 0.00 40.44 0.86
510 511 2.455032 GCTCAGCGCGTCATATATAGG 58.545 52.381 8.43 0.00 0.00 2.57
511 512 2.455032 CTCAGCGCGTCATATATAGGC 58.545 52.381 8.43 0.00 0.00 3.93
512 513 1.134367 TCAGCGCGTCATATATAGGCC 59.866 52.381 8.43 0.00 0.00 5.19
514 515 0.099968 GCGCGTCATATATAGGCCGA 59.900 55.000 8.43 0.00 0.00 5.54
516 517 1.268589 CGCGTCATATATAGGCCGAGG 60.269 57.143 1.58 0.00 0.00 4.63
517 518 1.536284 GCGTCATATATAGGCCGAGGC 60.536 57.143 5.37 5.37 41.06 4.70
519 520 0.744874 TCATATATAGGCCGAGGCGC 59.255 55.000 8.14 0.00 43.06 6.53
584 585 2.579787 CGAGGGACGCACGTCATC 60.580 66.667 23.10 18.15 46.20 2.92
585 586 2.202756 GAGGGACGCACGTCATCC 60.203 66.667 23.10 16.03 46.20 3.51
588 589 4.430765 GGACGCACGTCATCCGGT 62.431 66.667 23.10 0.00 46.20 5.28
589 590 2.879462 GACGCACGTCATCCGGTC 60.879 66.667 17.70 0.00 44.02 4.79
592 593 2.158959 CGCACGTCATCCGGTCTTC 61.159 63.158 0.00 0.00 42.24 2.87
593 594 1.080093 GCACGTCATCCGGTCTTCA 60.080 57.895 0.00 0.00 42.24 3.02
595 596 0.243907 CACGTCATCCGGTCTTCACT 59.756 55.000 0.00 0.00 42.24 3.41
596 597 0.243907 ACGTCATCCGGTCTTCACTG 59.756 55.000 0.00 0.00 42.24 3.66
597 598 1.078759 CGTCATCCGGTCTTCACTGC 61.079 60.000 0.00 0.00 0.00 4.40
598 599 1.078759 GTCATCCGGTCTTCACTGCG 61.079 60.000 0.00 0.00 0.00 5.18
651 652 4.424566 CGCGGCAGCTTTGGCATT 62.425 61.111 7.38 0.00 42.32 3.56
652 653 2.812178 GCGGCAGCTTTGGCATTG 60.812 61.111 0.00 0.00 41.70 2.82
653 654 2.964174 CGGCAGCTTTGGCATTGA 59.036 55.556 0.46 0.00 41.70 2.57
654 655 1.514087 CGGCAGCTTTGGCATTGAT 59.486 52.632 0.46 0.00 41.70 2.57
657 658 1.274596 GCAGCTTTGGCATTGATTCG 58.725 50.000 0.00 0.00 41.70 3.34
658 659 1.274596 CAGCTTTGGCATTGATTCGC 58.725 50.000 0.00 0.00 41.70 4.70
663 664 4.612536 GGCATTGATTCGCCGCGG 62.613 66.667 24.05 24.05 38.82 6.46
664 665 4.612536 GCATTGATTCGCCGCGGG 62.613 66.667 29.38 17.41 0.00 6.13
665 666 2.894879 CATTGATTCGCCGCGGGA 60.895 61.111 29.38 19.62 0.00 5.14
667 668 1.747367 ATTGATTCGCCGCGGGAAA 60.747 52.632 29.38 13.60 37.97 3.13
668 669 1.101049 ATTGATTCGCCGCGGGAAAT 61.101 50.000 29.38 15.18 37.97 2.17
669 670 1.987704 TTGATTCGCCGCGGGAAATG 61.988 55.000 29.38 0.00 37.97 2.32
670 671 2.124901 ATTCGCCGCGGGAAATGA 60.125 55.556 29.38 7.70 37.97 2.57
671 672 2.105960 GATTCGCCGCGGGAAATGAG 62.106 60.000 29.38 0.46 37.97 2.90
672 673 4.830765 TCGCCGCGGGAAATGAGG 62.831 66.667 29.38 0.00 0.00 3.86
677 678 3.025619 GCGGGAAATGAGGCGATG 58.974 61.111 0.00 0.00 0.00 3.84
678 679 1.523711 GCGGGAAATGAGGCGATGA 60.524 57.895 0.00 0.00 0.00 2.92
679 680 1.502163 GCGGGAAATGAGGCGATGAG 61.502 60.000 0.00 0.00 0.00 2.90
682 683 1.587547 GGAAATGAGGCGATGAGGAC 58.412 55.000 0.00 0.00 0.00 3.85
684 685 0.824109 AAATGAGGCGATGAGGACGA 59.176 50.000 0.00 0.00 0.00 4.20
685 686 0.103208 AATGAGGCGATGAGGACGAC 59.897 55.000 0.00 0.00 39.24 4.34
686 687 2.024871 GAGGCGATGAGGACGACG 59.975 66.667 0.00 0.00 44.04 5.12
687 688 2.437895 AGGCGATGAGGACGACGA 60.438 61.111 0.00 0.00 44.04 4.20
688 689 1.989966 GAGGCGATGAGGACGACGAA 61.990 60.000 0.00 0.00 44.04 3.85
689 690 1.586564 GGCGATGAGGACGACGAAG 60.587 63.158 0.00 0.00 0.00 3.79
691 692 1.064296 CGATGAGGACGACGAAGGG 59.936 63.158 0.00 0.00 0.00 3.95
692 693 1.227002 GATGAGGACGACGAAGGGC 60.227 63.158 0.00 0.00 0.00 5.19
693 694 2.630592 GATGAGGACGACGAAGGGCC 62.631 65.000 0.00 0.00 0.00 5.80
697 698 3.437795 GACGACGAAGGGCCGAGA 61.438 66.667 0.00 0.00 0.00 4.04
698 699 2.986306 GACGACGAAGGGCCGAGAA 61.986 63.158 0.00 0.00 0.00 2.87
700 701 2.697761 CGACGAAGGGCCGAGAAGA 61.698 63.158 0.00 0.00 0.00 2.87
701 702 1.139947 GACGAAGGGCCGAGAAGAG 59.860 63.158 0.00 0.00 0.00 2.85
702 703 2.286127 GACGAAGGGCCGAGAAGAGG 62.286 65.000 0.00 0.00 0.00 3.69
703 704 2.904131 GAAGGGCCGAGAAGAGGG 59.096 66.667 0.00 0.00 0.00 4.30
706 707 0.688087 AAGGGCCGAGAAGAGGGTAG 60.688 60.000 0.00 0.00 0.00 3.18
708 709 1.110518 GGGCCGAGAAGAGGGTAGAG 61.111 65.000 0.00 0.00 0.00 2.43
709 710 0.396001 GGCCGAGAAGAGGGTAGAGT 60.396 60.000 0.00 0.00 0.00 3.24
710 711 1.026584 GCCGAGAAGAGGGTAGAGTC 58.973 60.000 0.00 0.00 0.00 3.36
712 713 0.658897 CGAGAAGAGGGTAGAGTCGC 59.341 60.000 0.00 0.00 0.00 5.19
713 714 1.744456 CGAGAAGAGGGTAGAGTCGCT 60.744 57.143 0.00 0.00 0.00 4.93
716 717 1.402613 GAAGAGGGTAGAGTCGCTGAC 59.597 57.143 1.15 1.15 0.00 3.51
717 718 0.328592 AGAGGGTAGAGTCGCTGACA 59.671 55.000 10.52 0.00 34.60 3.58
718 719 0.452585 GAGGGTAGAGTCGCTGACAC 59.547 60.000 10.52 5.10 34.60 3.67
720 721 1.136984 GGTAGAGTCGCTGACACGG 59.863 63.158 10.52 0.00 34.60 4.94
721 722 1.514443 GTAGAGTCGCTGACACGGC 60.514 63.158 10.52 0.00 38.12 5.68
746 747 2.718731 CGGCTGTTTCACGCCAAA 59.281 55.556 0.00 0.00 46.62 3.28
748 749 1.206115 CGGCTGTTTCACGCCAAAAC 61.206 55.000 0.00 2.03 46.62 2.43
749 750 0.179124 GGCTGTTTCACGCCAAAACA 60.179 50.000 9.39 9.39 45.59 2.83
754 755 1.843753 GTTTCACGCCAAAACAGTTCG 59.156 47.619 3.76 0.00 36.76 3.95
755 756 0.248296 TTCACGCCAAAACAGTTCGC 60.248 50.000 0.00 0.00 0.00 4.70
756 757 1.657181 CACGCCAAAACAGTTCGCC 60.657 57.895 0.00 0.00 0.00 5.54
758 759 2.338620 GCCAAAACAGTTCGCCCC 59.661 61.111 0.00 0.00 0.00 5.80
759 760 2.642700 CCAAAACAGTTCGCCCCG 59.357 61.111 0.00 0.00 0.00 5.73
760 761 2.642700 CAAAACAGTTCGCCCCGG 59.357 61.111 0.00 0.00 0.00 5.73
761 762 3.292159 AAAACAGTTCGCCCCGGC 61.292 61.111 0.00 0.00 37.85 6.13
803 804 4.078516 CGGGTTCGGTCTGGGTCC 62.079 72.222 0.00 0.00 0.00 4.46
805 806 4.754667 GGTTCGGTCTGGGTCCGC 62.755 72.222 0.00 0.00 46.49 5.54
806 807 4.754667 GTTCGGTCTGGGTCCGCC 62.755 72.222 0.00 0.00 46.49 6.13
837 838 2.877691 GCTCAAGCCGGCGAAAAT 59.122 55.556 23.20 0.00 34.31 1.82
838 839 1.226407 GCTCAAGCCGGCGAAAATC 60.226 57.895 23.20 6.33 34.31 2.17
839 840 1.060937 CTCAAGCCGGCGAAAATCG 59.939 57.895 23.20 5.59 43.89 3.34
841 842 3.131478 AAGCCGGCGAAAATCGGG 61.131 61.111 23.20 0.00 45.75 5.14
843 844 3.436924 GCCGGCGAAAATCGGGTT 61.437 61.111 12.58 0.00 45.75 4.11
844 845 2.789249 CCGGCGAAAATCGGGTTC 59.211 61.111 9.30 0.00 42.32 3.62
845 846 2.757056 CCGGCGAAAATCGGGTTCC 61.757 63.158 9.30 0.00 42.32 3.62
847 848 1.800681 GGCGAAAATCGGGTTCCTG 59.199 57.895 1.64 0.00 40.84 3.86
848 849 0.675522 GGCGAAAATCGGGTTCCTGA 60.676 55.000 2.65 2.65 40.84 3.86
850 851 1.369625 CGAAAATCGGGTTCCTGAGG 58.630 55.000 6.52 0.00 36.00 3.86
852 853 2.357075 GAAAATCGGGTTCCTGAGGAC 58.643 52.381 0.00 0.00 0.00 3.85
853 854 0.249398 AAATCGGGTTCCTGAGGACG 59.751 55.000 0.00 1.45 0.00 4.79
854 855 2.240162 AATCGGGTTCCTGAGGACGC 62.240 60.000 0.00 4.42 0.00 5.19
855 856 4.796231 CGGGTTCCTGAGGACGCG 62.796 72.222 19.54 19.54 34.94 6.01
856 857 3.379445 GGGTTCCTGAGGACGCGA 61.379 66.667 15.93 0.00 0.00 5.87
857 858 2.126031 GGTTCCTGAGGACGCGAC 60.126 66.667 15.93 6.56 0.00 5.19
860 861 2.636412 TTCCTGAGGACGCGACTGG 61.636 63.158 15.93 14.00 0.00 4.00
861 862 3.062466 CCTGAGGACGCGACTGGA 61.062 66.667 15.93 0.00 0.00 3.86
862 863 2.179517 CTGAGGACGCGACTGGAC 59.820 66.667 15.93 0.00 0.00 4.02
863 864 3.343788 CTGAGGACGCGACTGGACC 62.344 68.421 15.93 6.12 0.00 4.46
864 865 4.477975 GAGGACGCGACTGGACCG 62.478 72.222 15.93 0.00 0.00 4.79
868 869 1.445582 GACGCGACTGGACCGATTT 60.446 57.895 15.93 0.00 0.00 2.17
871 872 0.094730 CGCGACTGGACCGATTTTTC 59.905 55.000 0.00 0.00 0.00 2.29
872 873 0.094730 GCGACTGGACCGATTTTTCG 59.905 55.000 0.00 0.00 0.00 3.46
879 880 4.530325 CCGATTTTTCGGCGCCGG 62.530 66.667 44.95 27.98 46.76 6.13
905 906 3.605013 AAAAACGCCTGGAAATGCC 57.395 47.368 0.00 0.00 37.10 4.40
907 908 1.047801 AAAACGCCTGGAAATGCCTT 58.952 45.000 0.00 0.00 37.63 4.35
908 909 0.603065 AAACGCCTGGAAATGCCTTC 59.397 50.000 0.00 0.00 37.63 3.46
952 953 7.344095 TGCCCTTACTATACAAGTCTAGAAC 57.656 40.000 0.00 0.00 39.80 3.01
953 954 7.124052 TGCCCTTACTATACAAGTCTAGAACT 58.876 38.462 0.00 0.00 39.80 3.01
965 5084 0.107703 CTAGAACTTGGGCGGCATGA 60.108 55.000 12.47 0.00 0.00 3.07
968 5087 1.064758 AGAACTTGGGCGGCATGAATA 60.065 47.619 12.47 0.00 0.00 1.75
979 5098 2.285834 CGGCATGAATAAGCTTGACGAC 60.286 50.000 9.86 0.00 44.44 4.34
1011 5131 2.655364 CGAGCTATGTCCGTGCGG 60.655 66.667 3.94 3.94 0.00 5.69
1158 5290 4.043200 GCCTGCCCGTTTCAGCAC 62.043 66.667 0.00 0.00 34.68 4.40
1552 5729 2.825836 GCTCCATCGTGCCCAAGG 60.826 66.667 0.00 0.00 0.00 3.61
1601 5805 6.555315 GCATTTGTCCTGTGACCTAATTAAG 58.445 40.000 0.00 0.00 41.01 1.85
1656 5873 7.810658 TCAAGTATCAGCTTTCAATTTGAGTC 58.189 34.615 0.00 0.00 0.00 3.36
1763 6009 1.816835 ACGTGAATGAGCTAACCGAGA 59.183 47.619 0.00 0.00 0.00 4.04
1794 6040 2.684192 ATCGAGGAGGAGATCGGCGT 62.684 60.000 6.85 0.00 39.38 5.68
1795 6041 2.482333 CGAGGAGGAGATCGGCGTT 61.482 63.158 6.85 0.00 35.33 4.84
1842 6088 7.363268 GCTGAATACCAGGAAAAATGTCTTCAT 60.363 37.037 0.00 0.00 43.13 2.57
1897 6267 2.612212 CACAAAGGTACACACTTCGCTT 59.388 45.455 0.00 0.00 0.00 4.68
1916 6289 5.059404 GCTTAAGCAGCTGGTCAATTTAA 57.941 39.130 22.59 12.33 46.27 1.52
2001 7118 1.693083 CGGCGAAACCAGAATCGACC 61.693 60.000 0.00 0.00 44.13 4.79
2143 7629 6.070251 TCCTGCTCACAAGTAAGGAATTATCA 60.070 38.462 0.00 0.00 35.67 2.15
2203 7698 1.732259 CTTGGCCGAGTGTACATGTTC 59.268 52.381 12.40 0.00 0.00 3.18
2216 7711 7.611770 AGTGTACATGTTCTCTGCACTATTAA 58.388 34.615 2.30 0.00 34.47 1.40
2352 7875 2.017782 GGTGTCTCTAGATCGAGCACA 58.982 52.381 2.38 12.15 38.56 4.57
2362 7887 7.175641 TCTCTAGATCGAGCACATCAATTCATA 59.824 37.037 2.38 0.00 0.00 2.15
2363 7888 7.661040 TCTAGATCGAGCACATCAATTCATAA 58.339 34.615 2.38 0.00 0.00 1.90
2382 7912 5.882000 TCATAAAAGCATGCAGAAGAAGCTA 59.118 36.000 21.98 0.00 34.66 3.32
2396 7926 9.278734 GCAGAAGAAGCTATTTGTAATTGTAAC 57.721 33.333 0.00 0.00 0.00 2.50
2575 8257 2.729882 GTGTGTGTCCGTGAGTGTAATC 59.270 50.000 0.00 0.00 0.00 1.75
2577 8259 1.068125 TGTGTCCGTGAGTGTAATCCG 60.068 52.381 0.00 0.00 0.00 4.18
2607 8295 7.216494 TGTATGTATCAATGTATGGAGTGGTG 58.784 38.462 0.00 0.00 0.00 4.17
2608 8296 5.692115 TGTATCAATGTATGGAGTGGTGT 57.308 39.130 0.00 0.00 0.00 4.16
2609 8297 6.800072 TGTATCAATGTATGGAGTGGTGTA 57.200 37.500 0.00 0.00 0.00 2.90
2610 8298 7.373617 TGTATCAATGTATGGAGTGGTGTAT 57.626 36.000 0.00 0.00 0.00 2.29
2611 8299 7.801104 TGTATCAATGTATGGAGTGGTGTATT 58.199 34.615 0.00 0.00 0.00 1.89
2721 8415 5.163663 TGTTTAGCTGTTTCCTGACAACAAG 60.164 40.000 0.00 0.00 33.74 3.16
2897 8599 4.261405 GCTGTGTGCATTTTACACCACTAA 60.261 41.667 5.89 0.00 45.95 2.24
2925 8627 7.056006 ACATTCTGACTTGCACATATATTGGA 58.944 34.615 0.00 0.00 0.00 3.53
3117 9011 3.007723 TGCAGCTCTGAGTTCATTCTTCT 59.992 43.478 6.53 0.00 0.00 2.85
3160 9101 2.950433 CTACTCGAGCACCCGTTTTTA 58.050 47.619 13.61 0.00 0.00 1.52
3162 9103 1.202557 ACTCGAGCACCCGTTTTTACA 60.203 47.619 13.61 0.00 0.00 2.41
3313 9936 5.276868 CGTTGATGAAAGAAGTATTAGCCCG 60.277 44.000 0.00 0.00 0.00 6.13
3326 9949 6.727394 AGTATTAGCCCGATCTAGATCTCTT 58.273 40.000 26.29 13.72 35.72 2.85
3333 9957 3.005261 CCGATCTAGATCTCTTGGTGTGG 59.995 52.174 26.29 14.84 35.72 4.17
3334 9958 3.551863 CGATCTAGATCTCTTGGTGTGGC 60.552 52.174 26.29 0.86 35.72 5.01
3429 10053 7.686438 TTGTGGTGACATATCATAATATGCC 57.314 36.000 0.00 0.00 45.88 4.40
3482 10106 5.349061 TGAAGCATAGATGTCACATGTCT 57.651 39.130 0.00 0.00 0.00 3.41
3484 10108 5.583457 TGAAGCATAGATGTCACATGTCTTG 59.417 40.000 0.00 0.00 0.00 3.02
3524 10148 3.950395 AGATAGTTGAATCCTTGCAAGCC 59.050 43.478 21.43 9.73 0.00 4.35
3585 10209 1.069668 CCTCCGTCCGGGTTTATTAGG 59.930 57.143 0.00 0.00 37.00 2.69
3605 10229 1.757764 GCCCCCTCATATTTTGGGTCC 60.758 57.143 0.00 0.00 39.31 4.46
3756 10380 6.232581 TCAAATTCATGGTCAAACTTTGGT 57.767 33.333 1.62 0.00 0.00 3.67
3758 10382 3.451141 TTCATGGTCAAACTTTGGTGC 57.549 42.857 1.62 0.00 0.00 5.01
3783 10407 6.818281 AAATAAAAGGGGGCCTAATAAACC 57.182 37.500 0.84 0.00 31.13 3.27
3795 10419 2.967599 AATAAACCGGACGGAGGTAC 57.032 50.000 18.80 0.00 41.95 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.512515 GAGATGGTCCGGCAGCAC 60.513 66.667 0.00 0.00 34.56 4.40
4 5 4.148825 ACGAGATGGTCCGGCAGC 62.149 66.667 0.00 0.00 0.00 5.25
8 9 4.907034 CGCGACGAGATGGTCCGG 62.907 72.222 0.00 0.00 33.30 5.14
10 11 3.471244 CTCCGCGACGAGATGGTCC 62.471 68.421 8.23 0.00 33.30 4.46
11 12 2.024871 CTCCGCGACGAGATGGTC 59.975 66.667 8.23 0.00 30.97 4.02
12 13 2.881539 TACCTCCGCGACGAGATGGT 62.882 60.000 8.23 16.20 30.97 3.55
13 14 2.119147 CTACCTCCGCGACGAGATGG 62.119 65.000 8.23 3.60 30.97 3.51
14 15 1.280142 CTACCTCCGCGACGAGATG 59.720 63.158 8.23 0.00 30.97 2.90
15 16 1.153208 ACTACCTCCGCGACGAGAT 60.153 57.895 8.23 0.00 30.97 2.75
16 17 1.812922 GACTACCTCCGCGACGAGA 60.813 63.158 8.23 0.00 30.97 4.04
19 20 3.431683 GACGACTACCTCCGCGACG 62.432 68.421 8.23 0.00 0.00 5.12
20 21 2.402787 GACGACTACCTCCGCGAC 59.597 66.667 8.23 0.00 0.00 5.19
21 22 2.821366 GGACGACTACCTCCGCGA 60.821 66.667 8.23 0.00 0.00 5.87
22 23 3.885521 GGGACGACTACCTCCGCG 61.886 72.222 0.00 0.00 0.00 6.46
53 54 3.398353 CTTCTCCGACGAGGACGCC 62.398 68.421 0.00 0.00 45.98 5.68
55 56 2.100603 GCTTCTCCGACGAGGACG 59.899 66.667 0.00 0.00 45.98 4.79
56 57 1.668101 ATGGCTTCTCCGACGAGGAC 61.668 60.000 0.00 0.00 45.98 3.85
58 59 1.227089 CATGGCTTCTCCGACGAGG 60.227 63.158 0.00 0.00 42.97 4.63
61 62 2.892425 GGCATGGCTTCTCCGACG 60.892 66.667 12.86 0.00 37.80 5.12
62 63 2.892425 CGGCATGGCTTCTCCGAC 60.892 66.667 18.09 0.00 44.23 4.79
63 64 4.161295 CCGGCATGGCTTCTCCGA 62.161 66.667 18.09 0.00 44.23 4.55
72 73 2.177594 GAGGAGATAGCCCGGCATGG 62.178 65.000 13.15 0.00 37.55 3.66
73 74 1.294780 GAGGAGATAGCCCGGCATG 59.705 63.158 13.15 0.00 0.00 4.06
74 75 2.279069 CGAGGAGATAGCCCGGCAT 61.279 63.158 13.15 2.97 0.00 4.40
75 76 2.347691 TACGAGGAGATAGCCCGGCA 62.348 60.000 13.15 0.00 0.00 5.69
76 77 1.602888 TACGAGGAGATAGCCCGGC 60.603 63.158 0.00 0.00 0.00 6.13
77 78 0.250814 AGTACGAGGAGATAGCCCGG 60.251 60.000 0.00 0.00 0.00 5.73
78 79 1.158434 GAGTACGAGGAGATAGCCCG 58.842 60.000 0.00 0.00 0.00 6.13
79 80 1.202903 TGGAGTACGAGGAGATAGCCC 60.203 57.143 0.00 0.00 0.00 5.19
80 81 1.881324 GTGGAGTACGAGGAGATAGCC 59.119 57.143 0.00 0.00 0.00 3.93
113 114 4.821589 GTCGAGCCCAAGCCGGAG 62.822 72.222 5.05 0.00 41.25 4.63
116 117 4.735132 TTCGTCGAGCCCAAGCCG 62.735 66.667 0.00 0.00 41.25 5.52
117 118 2.815647 CTTCGTCGAGCCCAAGCC 60.816 66.667 0.00 0.00 41.25 4.35
118 119 2.095252 GTCTTCGTCGAGCCCAAGC 61.095 63.158 0.00 0.00 40.32 4.01
119 120 1.801913 CGTCTTCGTCGAGCCCAAG 60.802 63.158 0.00 0.00 0.00 3.61
121 122 2.196382 CTTCGTCTTCGTCGAGCCCA 62.196 60.000 0.00 0.00 38.52 5.36
123 124 2.153322 GCTTCGTCTTCGTCGAGCC 61.153 63.158 0.00 0.00 38.52 4.70
124 125 2.489617 CGCTTCGTCTTCGTCGAGC 61.490 63.158 0.00 0.00 38.52 5.03
126 127 2.175078 CCGCTTCGTCTTCGTCGA 59.825 61.111 0.00 0.00 38.33 4.20
127 128 3.533691 GCCGCTTCGTCTTCGTCG 61.534 66.667 0.00 0.00 38.33 5.12
128 129 3.179939 GGCCGCTTCGTCTTCGTC 61.180 66.667 0.00 0.00 38.33 4.20
131 132 4.736896 ACCGGCCGCTTCGTCTTC 62.737 66.667 22.85 0.00 0.00 2.87
144 145 4.029809 GAACACCTCCCCCACCGG 62.030 72.222 0.00 0.00 0.00 5.28
145 146 2.928396 AGAACACCTCCCCCACCG 60.928 66.667 0.00 0.00 0.00 4.94
146 147 2.955881 CGAGAACACCTCCCCCACC 61.956 68.421 0.00 0.00 38.71 4.61
148 149 3.319198 GCGAGAACACCTCCCCCA 61.319 66.667 0.00 0.00 38.71 4.96
149 150 3.003763 AGCGAGAACACCTCCCCC 61.004 66.667 0.00 0.00 38.71 5.40
152 153 1.086634 GCATCAGCGAGAACACCTCC 61.087 60.000 0.00 0.00 38.71 4.30
153 154 2.378028 GCATCAGCGAGAACACCTC 58.622 57.895 0.00 0.00 38.55 3.85
164 165 3.267860 CTTCGGCTCCGCATCAGC 61.268 66.667 2.96 0.00 39.59 4.26
209 210 4.479993 CAAGCCGGAGCCCCAGAG 62.480 72.222 5.05 0.00 41.25 3.35
211 212 4.785453 GTCAAGCCGGAGCCCCAG 62.785 72.222 5.05 0.00 41.25 4.45
233 234 3.465403 CTCCTGCCTCCACCTCCG 61.465 72.222 0.00 0.00 0.00 4.63
234 235 3.086600 CCTCCTGCCTCCACCTCC 61.087 72.222 0.00 0.00 0.00 4.30
237 238 3.791586 GCTCCTCCTGCCTCCACC 61.792 72.222 0.00 0.00 0.00 4.61
238 239 3.791586 GGCTCCTCCTGCCTCCAC 61.792 72.222 0.00 0.00 46.38 4.02
258 259 2.829458 GGTCCTCCTCCTCGTCCG 60.829 72.222 0.00 0.00 0.00 4.79
260 261 2.442458 GGGGTCCTCCTCCTCGTC 60.442 72.222 0.00 0.00 35.33 4.20
278 279 4.899239 GAGGCGCATGGAGACCGG 62.899 72.222 10.83 0.00 0.00 5.28
281 282 4.899239 CCCGAGGCGCATGGAGAC 62.899 72.222 10.83 0.00 0.00 3.36
287 288 3.227276 CTAGACCCCGAGGCGCAT 61.227 66.667 10.83 0.00 36.11 4.73
290 291 2.907917 CTCCTAGACCCCGAGGCG 60.908 72.222 0.00 0.00 35.44 5.52
293 294 1.110518 GGAAGCTCCTAGACCCCGAG 61.111 65.000 0.00 0.00 32.53 4.63
294 295 1.076192 GGAAGCTCCTAGACCCCGA 60.076 63.158 0.00 0.00 32.53 5.14
295 296 2.134933 GGGAAGCTCCTAGACCCCG 61.135 68.421 0.00 0.00 36.57 5.73
296 297 2.134933 CGGGAAGCTCCTAGACCCC 61.135 68.421 0.00 0.00 36.57 4.95
298 299 2.798364 GCCGGGAAGCTCCTAGACC 61.798 68.421 2.18 0.00 36.57 3.85
299 300 2.816012 GCCGGGAAGCTCCTAGAC 59.184 66.667 2.18 0.00 36.57 2.59
300 301 2.833582 CGCCGGGAAGCTCCTAGA 60.834 66.667 2.18 0.00 36.57 2.43
319 320 3.296709 CTCCCCCGTCCTTCACACG 62.297 68.421 0.00 0.00 36.99 4.49
320 321 2.663196 CTCCCCCGTCCTTCACAC 59.337 66.667 0.00 0.00 0.00 3.82
321 322 3.319198 GCTCCCCCGTCCTTCACA 61.319 66.667 0.00 0.00 0.00 3.58
322 323 4.452733 CGCTCCCCCGTCCTTCAC 62.453 72.222 0.00 0.00 0.00 3.18
333 334 3.217743 CTCGAGTACCCCGCTCCC 61.218 72.222 3.62 0.00 0.00 4.30
334 335 3.217743 CCTCGAGTACCCCGCTCC 61.218 72.222 12.31 0.00 0.00 4.70
335 336 3.902086 GCCTCGAGTACCCCGCTC 61.902 72.222 12.31 0.00 0.00 5.03
359 360 2.651105 TACATCGAGGGCGGCAACA 61.651 57.895 12.47 0.00 38.28 3.33
360 361 2.171725 GTACATCGAGGGCGGCAAC 61.172 63.158 12.47 2.63 38.28 4.17
361 362 2.185867 GTACATCGAGGGCGGCAA 59.814 61.111 12.47 0.00 38.28 4.52
362 363 2.758327 AGTACATCGAGGGCGGCA 60.758 61.111 12.47 0.00 38.28 5.69
363 364 2.027751 GAGTACATCGAGGGCGGC 59.972 66.667 0.00 0.00 38.28 6.53
372 373 1.102222 AGGCCGTCCTCGAGTACATC 61.102 60.000 12.31 0.00 38.72 3.06
373 374 1.076923 AGGCCGTCCTCGAGTACAT 60.077 57.895 12.31 0.00 38.72 2.29
374 375 2.353958 AGGCCGTCCTCGAGTACA 59.646 61.111 12.31 0.00 38.72 2.90
455 456 3.499737 CCACCAACGGCATCGAGC 61.500 66.667 0.00 0.00 44.65 5.03
465 466 2.743928 CAGCTCGAGGCCACCAAC 60.744 66.667 15.58 0.00 43.05 3.77
466 467 4.704833 GCAGCTCGAGGCCACCAA 62.705 66.667 15.58 0.00 43.05 3.67
486 487 2.427540 ATATGACGCGCTGAGCCCTC 62.428 60.000 5.73 0.00 44.76 4.30
487 488 1.179174 TATATGACGCGCTGAGCCCT 61.179 55.000 5.73 0.00 44.76 5.19
489 490 2.455032 CTATATATGACGCGCTGAGCC 58.545 52.381 5.73 0.00 44.76 4.70
490 491 2.455032 CCTATATATGACGCGCTGAGC 58.545 52.381 5.73 0.00 43.95 4.26
491 492 2.455032 GCCTATATATGACGCGCTGAG 58.545 52.381 5.73 0.00 0.00 3.35
492 493 1.134367 GGCCTATATATGACGCGCTGA 59.866 52.381 5.73 0.00 0.00 4.26
493 494 1.560923 GGCCTATATATGACGCGCTG 58.439 55.000 5.73 1.02 0.00 5.18
494 495 0.100682 CGGCCTATATATGACGCGCT 59.899 55.000 5.73 0.00 0.00 5.92
495 496 0.099968 TCGGCCTATATATGACGCGC 59.900 55.000 5.73 0.00 0.00 6.86
496 497 1.268589 CCTCGGCCTATATATGACGCG 60.269 57.143 3.53 3.53 0.00 6.01
497 498 1.536284 GCCTCGGCCTATATATGACGC 60.536 57.143 8.28 0.00 34.56 5.19
498 499 1.268589 CGCCTCGGCCTATATATGACG 60.269 57.143 6.92 6.92 37.98 4.35
499 500 1.536284 GCGCCTCGGCCTATATATGAC 60.536 57.143 0.00 0.00 37.98 3.06
500 501 0.744874 GCGCCTCGGCCTATATATGA 59.255 55.000 0.00 0.00 37.98 2.15
567 568 2.579787 GATGACGTGCGTCCCTCG 60.580 66.667 19.99 0.00 43.97 4.63
568 569 2.202756 GGATGACGTGCGTCCCTC 60.203 66.667 19.99 15.94 45.39 4.30
572 573 2.814183 AAGACCGGATGACGTGCGTC 62.814 60.000 9.46 16.69 44.77 5.19
573 574 2.814183 GAAGACCGGATGACGTGCGT 62.814 60.000 9.46 0.00 40.39 5.24
574 575 2.126071 AAGACCGGATGACGTGCG 60.126 61.111 9.46 0.98 42.24 5.34
575 576 1.080093 TGAAGACCGGATGACGTGC 60.080 57.895 9.46 0.00 42.24 5.34
576 577 0.243907 AGTGAAGACCGGATGACGTG 59.756 55.000 9.46 0.00 42.24 4.49
577 578 0.243907 CAGTGAAGACCGGATGACGT 59.756 55.000 9.46 0.00 42.24 4.34
578 579 1.078759 GCAGTGAAGACCGGATGACG 61.079 60.000 9.46 0.00 43.80 4.35
579 580 1.078759 CGCAGTGAAGACCGGATGAC 61.079 60.000 9.46 0.00 0.00 3.06
580 581 1.215382 CGCAGTGAAGACCGGATGA 59.785 57.895 9.46 0.00 0.00 2.92
581 582 2.456119 GCGCAGTGAAGACCGGATG 61.456 63.158 9.46 0.00 0.00 3.51
582 583 2.125512 GCGCAGTGAAGACCGGAT 60.126 61.111 9.46 0.00 0.00 4.18
602 603 2.484062 GCCATTGATGCCTCACGGG 61.484 63.158 8.23 6.34 38.36 5.28
603 604 2.827051 CGCCATTGATGCCTCACGG 61.827 63.158 0.00 0.00 0.00 4.94
604 605 2.711311 CGCCATTGATGCCTCACG 59.289 61.111 0.00 0.00 0.00 4.35
605 606 2.332362 CTGCGCCATTGATGCCTCAC 62.332 60.000 4.18 0.00 0.00 3.51
607 608 2.719979 CTGCGCCATTGATGCCTC 59.280 61.111 4.18 0.00 0.00 4.70
608 609 2.831742 CCTGCGCCATTGATGCCT 60.832 61.111 4.18 0.00 0.00 4.75
610 611 3.524606 AGCCTGCGCCATTGATGC 61.525 61.111 4.18 0.00 34.57 3.91
611 612 2.116533 TCAGCCTGCGCCATTGATG 61.117 57.895 4.18 0.00 34.57 3.07
612 613 2.117156 GTCAGCCTGCGCCATTGAT 61.117 57.895 4.18 0.00 34.57 2.57
613 614 2.747460 GTCAGCCTGCGCCATTGA 60.747 61.111 4.18 0.32 34.57 2.57
614 615 3.818787 GGTCAGCCTGCGCCATTG 61.819 66.667 4.18 0.00 34.57 2.82
635 636 2.567564 ATCAATGCCAAAGCTGCCGC 62.568 55.000 0.00 0.00 40.80 6.53
636 637 0.108520 AATCAATGCCAAAGCTGCCG 60.109 50.000 0.00 0.00 40.80 5.69
638 639 1.274596 CGAATCAATGCCAAAGCTGC 58.725 50.000 0.00 0.00 40.80 5.25
640 641 3.727419 GCGAATCAATGCCAAAGCT 57.273 47.368 0.00 0.00 40.80 3.74
647 648 4.612536 CCCGCGGCGAATCAATGC 62.613 66.667 25.92 0.00 0.00 3.56
649 650 1.101049 ATTTCCCGCGGCGAATCAAT 61.101 50.000 25.92 12.19 0.00 2.57
651 652 2.124901 ATTTCCCGCGGCGAATCA 60.125 55.556 25.92 11.10 0.00 2.57
652 653 2.105960 CTCATTTCCCGCGGCGAATC 62.106 60.000 25.92 0.00 0.00 2.52
653 654 2.124901 TCATTTCCCGCGGCGAAT 60.125 55.556 25.92 18.50 0.00 3.34
654 655 2.817834 CTCATTTCCCGCGGCGAA 60.818 61.111 25.92 21.49 0.00 4.70
658 659 4.830765 TCGCCTCATTTCCCGCGG 62.831 66.667 21.04 21.04 44.56 6.46
660 661 1.502163 CTCATCGCCTCATTTCCCGC 61.502 60.000 0.00 0.00 0.00 6.13
662 663 0.469917 TCCTCATCGCCTCATTTCCC 59.530 55.000 0.00 0.00 0.00 3.97
663 664 1.587547 GTCCTCATCGCCTCATTTCC 58.412 55.000 0.00 0.00 0.00 3.13
664 665 1.202417 TCGTCCTCATCGCCTCATTTC 60.202 52.381 0.00 0.00 0.00 2.17
665 666 0.824109 TCGTCCTCATCGCCTCATTT 59.176 50.000 0.00 0.00 0.00 2.32
667 668 1.736586 GTCGTCCTCATCGCCTCAT 59.263 57.895 0.00 0.00 0.00 2.90
668 669 2.761195 CGTCGTCCTCATCGCCTCA 61.761 63.158 0.00 0.00 0.00 3.86
669 670 1.989966 TTCGTCGTCCTCATCGCCTC 61.990 60.000 0.00 0.00 0.00 4.70
670 671 1.994507 CTTCGTCGTCCTCATCGCCT 61.995 60.000 0.00 0.00 0.00 5.52
671 672 1.586564 CTTCGTCGTCCTCATCGCC 60.587 63.158 0.00 0.00 0.00 5.54
672 673 1.586564 CCTTCGTCGTCCTCATCGC 60.587 63.158 0.00 0.00 0.00 4.58
673 674 1.064296 CCCTTCGTCGTCCTCATCG 59.936 63.158 0.00 0.00 0.00 3.84
674 675 1.227002 GCCCTTCGTCGTCCTCATC 60.227 63.158 0.00 0.00 0.00 2.92
675 676 2.722201 GGCCCTTCGTCGTCCTCAT 61.722 63.158 0.00 0.00 0.00 2.90
676 677 3.379445 GGCCCTTCGTCGTCCTCA 61.379 66.667 0.00 0.00 0.00 3.86
677 678 4.493747 CGGCCCTTCGTCGTCCTC 62.494 72.222 0.00 0.00 0.00 3.71
679 680 4.493747 CTCGGCCCTTCGTCGTCC 62.494 72.222 0.00 0.00 0.00 4.79
682 683 2.202623 CTTCTCGGCCCTTCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
684 685 2.352032 CCTCTTCTCGGCCCTTCGT 61.352 63.158 0.00 0.00 0.00 3.85
685 686 2.496817 CCTCTTCTCGGCCCTTCG 59.503 66.667 0.00 0.00 0.00 3.79
686 687 0.686769 TACCCTCTTCTCGGCCCTTC 60.687 60.000 0.00 0.00 0.00 3.46
687 688 0.688087 CTACCCTCTTCTCGGCCCTT 60.688 60.000 0.00 0.00 0.00 3.95
688 689 1.075896 CTACCCTCTTCTCGGCCCT 60.076 63.158 0.00 0.00 0.00 5.19
689 690 1.076192 TCTACCCTCTTCTCGGCCC 60.076 63.158 0.00 0.00 0.00 5.80
691 692 1.026584 GACTCTACCCTCTTCTCGGC 58.973 60.000 0.00 0.00 0.00 5.54
692 693 1.301423 CGACTCTACCCTCTTCTCGG 58.699 60.000 0.00 0.00 0.00 4.63
693 694 0.658897 GCGACTCTACCCTCTTCTCG 59.341 60.000 0.00 0.00 0.00 4.04
695 696 1.282447 TCAGCGACTCTACCCTCTTCT 59.718 52.381 0.00 0.00 0.00 2.85
697 698 1.271982 TGTCAGCGACTCTACCCTCTT 60.272 52.381 9.49 0.00 33.15 2.85
698 699 0.328592 TGTCAGCGACTCTACCCTCT 59.671 55.000 9.49 0.00 33.15 3.69
700 701 1.306642 CGTGTCAGCGACTCTACCCT 61.307 60.000 9.49 0.00 33.15 4.34
701 702 1.136984 CGTGTCAGCGACTCTACCC 59.863 63.158 9.49 0.00 33.15 3.69
702 703 1.136984 CCGTGTCAGCGACTCTACC 59.863 63.158 9.49 0.00 33.15 3.18
703 704 1.514443 GCCGTGTCAGCGACTCTAC 60.514 63.158 9.49 0.71 33.15 2.59
723 724 4.090057 GTGAAACAGCCGCGAGCC 62.090 66.667 8.23 0.00 45.47 4.70
733 734 2.729467 CGAACTGTTTTGGCGTGAAACA 60.729 45.455 11.42 11.42 42.78 2.83
734 735 1.843753 CGAACTGTTTTGGCGTGAAAC 59.156 47.619 0.00 4.59 37.48 2.78
735 736 1.795889 GCGAACTGTTTTGGCGTGAAA 60.796 47.619 0.00 0.00 0.00 2.69
736 737 0.248296 GCGAACTGTTTTGGCGTGAA 60.248 50.000 0.00 0.00 0.00 3.18
737 738 1.353804 GCGAACTGTTTTGGCGTGA 59.646 52.632 0.00 0.00 0.00 4.35
738 739 1.657181 GGCGAACTGTTTTGGCGTG 60.657 57.895 0.00 0.00 32.29 5.34
739 740 2.719354 GGCGAACTGTTTTGGCGT 59.281 55.556 0.00 0.00 32.29 5.68
742 743 2.642700 CGGGGCGAACTGTTTTGG 59.357 61.111 0.00 0.00 0.00 3.28
744 745 3.292159 GCCGGGGCGAACTGTTTT 61.292 61.111 2.18 0.00 0.00 2.43
786 787 4.078516 GGACCCAGACCGAACCCG 62.079 72.222 0.00 0.00 0.00 5.28
806 807 4.445545 GAGCCGAAAACAGCGCCG 62.446 66.667 2.29 0.00 0.00 6.46
807 808 2.786564 CTTGAGCCGAAAACAGCGCC 62.787 60.000 2.29 0.00 0.00 6.53
808 809 1.441016 CTTGAGCCGAAAACAGCGC 60.441 57.895 0.00 0.00 0.00 5.92
809 810 1.441016 GCTTGAGCCGAAAACAGCG 60.441 57.895 0.00 0.00 34.31 5.18
820 821 1.226407 GATTTTCGCCGGCTTGAGC 60.226 57.895 26.68 6.67 41.14 4.26
821 822 1.060937 CGATTTTCGCCGGCTTGAG 59.939 57.895 26.68 9.07 31.14 3.02
823 824 2.100216 CCGATTTTCGCCGGCTTG 59.900 61.111 26.68 10.37 38.82 4.01
824 825 3.131478 CCCGATTTTCGCCGGCTT 61.131 61.111 26.68 3.40 44.07 4.35
825 826 3.912745 AACCCGATTTTCGCCGGCT 62.913 57.895 26.68 4.40 44.07 5.52
826 827 3.391160 GAACCCGATTTTCGCCGGC 62.391 63.158 19.07 19.07 44.07 6.13
827 828 2.757056 GGAACCCGATTTTCGCCGG 61.757 63.158 0.00 0.00 44.94 6.13
828 829 1.743995 AGGAACCCGATTTTCGCCG 60.744 57.895 0.00 0.00 38.82 6.46
829 830 0.675522 TCAGGAACCCGATTTTCGCC 60.676 55.000 0.00 0.00 38.82 5.54
831 832 1.066430 TCCTCAGGAACCCGATTTTCG 60.066 52.381 0.00 0.00 40.07 3.46
832 833 2.357075 GTCCTCAGGAACCCGATTTTC 58.643 52.381 0.00 0.00 31.38 2.29
833 834 1.338769 CGTCCTCAGGAACCCGATTTT 60.339 52.381 0.00 0.00 31.38 1.82
834 835 0.249398 CGTCCTCAGGAACCCGATTT 59.751 55.000 0.00 0.00 31.38 2.17
835 836 1.898154 CGTCCTCAGGAACCCGATT 59.102 57.895 0.00 0.00 31.38 3.34
836 837 2.722201 GCGTCCTCAGGAACCCGAT 61.722 63.158 6.39 0.00 31.38 4.18
837 838 3.379445 GCGTCCTCAGGAACCCGA 61.379 66.667 6.39 0.00 31.38 5.14
838 839 4.796231 CGCGTCCTCAGGAACCCG 62.796 72.222 0.00 0.00 31.38 5.28
839 840 3.379445 TCGCGTCCTCAGGAACCC 61.379 66.667 5.77 0.00 31.38 4.11
840 841 2.126031 GTCGCGTCCTCAGGAACC 60.126 66.667 5.77 0.00 31.38 3.62
841 842 1.444553 CAGTCGCGTCCTCAGGAAC 60.445 63.158 5.77 0.00 31.38 3.62
843 844 3.062466 CCAGTCGCGTCCTCAGGA 61.062 66.667 5.77 0.00 0.00 3.86
844 845 3.062466 TCCAGTCGCGTCCTCAGG 61.062 66.667 5.77 2.43 0.00 3.86
845 846 2.179517 GTCCAGTCGCGTCCTCAG 59.820 66.667 5.77 0.00 0.00 3.35
847 848 4.477975 CGGTCCAGTCGCGTCCTC 62.478 72.222 5.77 0.00 0.00 3.71
850 851 1.012486 AAAATCGGTCCAGTCGCGTC 61.012 55.000 5.77 0.00 0.00 5.19
852 853 0.094730 GAAAAATCGGTCCAGTCGCG 59.905 55.000 0.00 0.00 0.00 5.87
853 854 0.094730 CGAAAAATCGGTCCAGTCGC 59.905 55.000 0.00 0.00 0.00 5.19
887 888 1.047801 AGGCATTTCCAGGCGTTTTT 58.952 45.000 0.00 0.00 37.29 1.94
888 889 1.000843 GAAGGCATTTCCAGGCGTTTT 59.999 47.619 0.00 0.00 38.13 2.43
891 892 4.002797 GAAGGCATTTCCAGGCGT 57.997 55.556 0.00 0.00 37.29 5.68
920 921 3.578716 TGTATAGTAAGGGCATCTCCAGC 59.421 47.826 0.00 0.00 36.21 4.85
921 922 5.305644 ACTTGTATAGTAAGGGCATCTCCAG 59.694 44.000 0.00 0.00 34.56 3.86
922 923 5.216622 ACTTGTATAGTAAGGGCATCTCCA 58.783 41.667 0.00 0.00 34.56 3.86
924 925 6.658188 AGACTTGTATAGTAAGGGCATCTC 57.342 41.667 0.00 0.00 37.17 2.75
927 928 7.785506 AGTTCTAGACTTGTATAGTAAGGGCAT 59.214 37.037 0.00 0.00 37.17 4.40
928 929 7.124052 AGTTCTAGACTTGTATAGTAAGGGCA 58.876 38.462 0.00 0.00 37.17 5.36
929 930 7.585579 AGTTCTAGACTTGTATAGTAAGGGC 57.414 40.000 0.00 0.00 37.17 5.19
952 953 0.031178 GCTTATTCATGCCGCCCAAG 59.969 55.000 0.00 0.00 0.00 3.61
953 954 0.395586 AGCTTATTCATGCCGCCCAA 60.396 50.000 0.00 0.00 0.00 4.12
956 957 1.024271 TCAAGCTTATTCATGCCGCC 58.976 50.000 0.00 0.00 0.00 6.13
965 5084 2.607187 CGACTGGTCGTCAAGCTTATT 58.393 47.619 14.05 0.00 46.99 1.40
968 5087 4.655527 CGACTGGTCGTCAAGCTT 57.344 55.556 14.05 0.00 46.99 3.74
1071 5197 1.136984 GAGGTCGCTCGTCGTCATT 59.863 57.895 0.00 0.00 39.67 2.57
1144 5273 4.966787 GGGGTGCTGAAACGGGCA 62.967 66.667 0.00 0.00 36.01 5.36
1146 5275 2.035626 ATGGGGTGCTGAAACGGG 59.964 61.111 0.00 0.00 0.00 5.28
1178 5325 0.674895 GTTGAACTCCTCATGCGGCT 60.675 55.000 0.00 0.00 32.78 5.52
1552 5729 0.666374 GCCACACACACCTTGGTAAC 59.334 55.000 0.00 0.00 32.50 2.50
1633 5844 6.428159 ACGACTCAAATTGAAAGCTGATACTT 59.572 34.615 0.00 0.00 0.00 2.24
1644 5861 3.485463 AGGTCCACGACTCAAATTGAA 57.515 42.857 0.00 0.00 32.47 2.69
1656 5873 7.318141 TCTAAAGATGTTAACTAAGGTCCACG 58.682 38.462 7.22 0.00 0.00 4.94
1700 5946 4.659529 TCGAGGTCCTATCCATCTACAT 57.340 45.455 0.00 0.00 0.00 2.29
1763 6009 2.171448 CCTCCTCGATGGTTTTGATCCT 59.829 50.000 0.00 0.00 37.07 3.24
1775 6021 1.969064 CGCCGATCTCCTCCTCGAT 60.969 63.158 0.00 0.00 37.05 3.59
1794 6040 0.246635 GTTCAGCTCCTCTGGCGTAA 59.753 55.000 0.00 0.00 43.06 3.18
1795 6041 1.605058 GGTTCAGCTCCTCTGGCGTA 61.605 60.000 0.00 0.00 43.06 4.42
1801 6047 0.543883 TCAGCAGGTTCAGCTCCTCT 60.544 55.000 0.00 0.00 41.14 3.69
1831 6077 2.939103 GCTGCTACCGATGAAGACATTT 59.061 45.455 0.00 0.00 36.82 2.32
1842 6088 1.152943 ATCTCCTCGCTGCTACCGA 60.153 57.895 0.00 0.00 0.00 4.69
1897 6267 5.321102 TCCTTTAAATTGACCAGCTGCTTA 58.679 37.500 8.66 0.00 0.00 3.09
1912 6285 8.108999 TCAGATTTGATGTCTGGATCCTTTAAA 58.891 33.333 14.23 5.50 42.58 1.52
1916 6289 5.705397 TCAGATTTGATGTCTGGATCCTT 57.295 39.130 14.23 0.00 42.58 3.36
1991 7108 1.144565 CGCAGCAGAGGTCGATTCTG 61.145 60.000 19.77 19.77 43.85 3.02
2157 7645 7.832503 AATTAATGGAAAATTTTGCTCCTCG 57.167 32.000 21.08 0.00 0.00 4.63
2203 7698 7.166628 ACGATCGAATTTTAATAGTGCAGAG 57.833 36.000 24.34 0.00 0.00 3.35
2352 7875 7.778083 TCTTCTGCATGCTTTTATGAATTGAT 58.222 30.769 20.33 0.00 0.00 2.57
2362 7887 5.656213 AATAGCTTCTTCTGCATGCTTTT 57.344 34.783 20.33 0.00 35.47 2.27
2363 7888 5.047519 ACAAATAGCTTCTTCTGCATGCTTT 60.048 36.000 20.33 3.27 35.47 3.51
2396 7926 8.495949 ACATAGAACACAAAGACGATTACAAAG 58.504 33.333 0.00 0.00 0.00 2.77
2504 8057 5.751028 CAGCTGAACTTTAGATAGTACTGCC 59.249 44.000 8.42 0.00 0.00 4.85
2506 8059 8.651588 CAAACAGCTGAACTTTAGATAGTACTG 58.348 37.037 23.35 0.00 0.00 2.74
2575 8257 6.402442 CCATACATTGATACATACATGCACGG 60.402 42.308 0.00 0.00 0.00 4.94
2577 8259 7.388776 ACTCCATACATTGATACATACATGCAC 59.611 37.037 0.00 0.00 0.00 4.57
2607 8295 5.708230 TGTCGGCCAAATCCCAATATAATAC 59.292 40.000 2.24 0.00 0.00 1.89
2608 8296 5.882040 TGTCGGCCAAATCCCAATATAATA 58.118 37.500 2.24 0.00 0.00 0.98
2609 8297 4.735369 TGTCGGCCAAATCCCAATATAAT 58.265 39.130 2.24 0.00 0.00 1.28
2610 8298 4.171878 TGTCGGCCAAATCCCAATATAA 57.828 40.909 2.24 0.00 0.00 0.98
2611 8299 3.866703 TGTCGGCCAAATCCCAATATA 57.133 42.857 2.24 0.00 0.00 0.86
2721 8415 4.984161 CCCATGACAAAACTTGATGAACAC 59.016 41.667 0.00 0.00 0.00 3.32
2775 8471 4.378770 GCTTGTTCATATGTGCCGATATGG 60.379 45.833 1.90 0.00 37.06 2.74
2781 8481 0.381801 GGGCTTGTTCATATGTGCCG 59.618 55.000 1.90 0.00 41.08 5.69
3059 8953 6.958192 TCAATACCAAGAAGTTACTAGGGAGT 59.042 38.462 0.00 0.00 39.92 3.85
3117 9011 1.144708 TGCATTTTGTCCTCTGGGTCA 59.855 47.619 0.00 0.00 0.00 4.02
3160 9101 9.845740 TTATAATTGTGCTAGGTGATTACATGT 57.154 29.630 2.69 2.69 0.00 3.21
3162 9103 9.845740 TGTTATAATTGTGCTAGGTGATTACAT 57.154 29.630 0.00 0.00 0.00 2.29
3190 9813 9.757227 ACTTAATCACTAGAGTCAGATTATTGC 57.243 33.333 0.00 0.00 34.16 3.56
3313 9936 3.244044 GGCCACACCAAGAGATCTAGATC 60.244 52.174 22.92 22.92 38.86 2.75
3429 10053 8.192774 ACTCATGTTATGTTTAATGGAATGCAG 58.807 33.333 0.00 0.00 0.00 4.41
3482 10106 7.936847 ACTATCTGTTTGGTTCTAATGACACAA 59.063 33.333 0.00 0.00 0.00 3.33
3484 10108 7.907214 ACTATCTGTTTGGTTCTAATGACAC 57.093 36.000 0.00 0.00 0.00 3.67
3524 10148 6.893262 ATGTACACATGGTGCTTAATGCAGG 61.893 44.000 0.00 0.00 43.21 4.85
3743 10367 6.670077 TTTATTTTGCACCAAAGTTTGACC 57.330 33.333 17.33 5.35 34.72 4.02
3750 10374 4.071423 CCCCCTTTTATTTTGCACCAAAG 58.929 43.478 0.00 0.00 34.72 2.77
3756 10380 2.037385 AGGCCCCCTTTTATTTTGCA 57.963 45.000 0.00 0.00 0.00 4.08
3758 10382 7.051623 GGTTTATTAGGCCCCCTTTTATTTTG 58.948 38.462 0.00 0.00 34.61 2.44
3783 10407 3.515330 AATGTTTAGTACCTCCGTCCG 57.485 47.619 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.