Multiple sequence alignment - TraesCS5A01G501200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G501200 chr5A 100.000 3650 0 0 1 3650 666753128 666749479 0.000000e+00 6741.0
1 TraesCS5A01G501200 chr5A 78.297 1456 280 30 1198 2629 666874101 666872658 0.000000e+00 905.0
2 TraesCS5A01G501200 chr5A 78.032 1443 281 30 1198 2616 667067580 667069010 0.000000e+00 876.0
3 TraesCS5A01G501200 chr5A 100.000 53 0 0 3598 3650 14267397 14267449 8.340000e-17 99.0
4 TraesCS5A01G501200 chr5A 100.000 52 0 0 3599 3650 503478621 503478570 3.000000e-16 97.1
5 TraesCS5A01G501200 chr4D 94.329 2398 98 13 587 2955 486431820 486434208 0.000000e+00 3640.0
6 TraesCS5A01G501200 chr4D 77.982 1467 275 36 1222 2655 486623186 486621735 0.000000e+00 876.0
7 TraesCS5A01G501200 chr4D 90.411 292 25 3 3293 3583 486440096 486440385 7.400000e-102 381.0
8 TraesCS5A01G501200 chr4D 90.909 176 16 0 2977 3152 486439930 486440105 1.690000e-58 237.0
9 TraesCS5A01G501200 chr4D 82.090 134 22 2 3466 3598 486429164 486429032 2.980000e-21 113.0
10 TraesCS5A01G501200 chr4B 94.826 2010 77 7 724 2711 620947265 620945261 0.000000e+00 3110.0
11 TraesCS5A01G501200 chr4B 77.785 1445 281 34 1198 2616 621279747 621281177 0.000000e+00 854.0
12 TraesCS5A01G501200 chr4B 89.577 307 25 4 3292 3598 620940492 620940193 2.060000e-102 383.0
13 TraesCS5A01G501200 chr4B 88.925 307 27 1 3292 3598 620470104 620469805 4.450000e-99 372.0
14 TraesCS5A01G501200 chr4B 88.599 307 23 2 3292 3598 620494810 620494516 2.680000e-96 363.0
15 TraesCS5A01G501200 chr4B 87.948 307 25 2 3292 3598 620370296 620370002 5.800000e-93 351.0
16 TraesCS5A01G501200 chr4B 87.948 307 25 2 3292 3598 620564554 620564260 5.800000e-93 351.0
17 TraesCS5A01G501200 chr4B 86.971 307 33 1 3292 3598 620482544 620482245 4.510000e-89 339.0
18 TraesCS5A01G501200 chr4B 92.576 229 15 2 2822 3048 620527705 620527477 9.770000e-86 327.0
19 TraesCS5A01G501200 chr4B 84.412 340 42 9 2822 3152 620370623 620370286 1.260000e-84 324.0
20 TraesCS5A01G501200 chr4B 86.230 305 30 2 3294 3598 620411371 620411079 1.640000e-83 320.0
21 TraesCS5A01G501200 chr4B 92.105 228 16 2 2822 3048 620943795 620943569 1.640000e-83 320.0
22 TraesCS5A01G501200 chr4B 83.578 341 44 10 2822 3152 620495138 620494800 3.540000e-80 309.0
23 TraesCS5A01G501200 chr4B 82.857 350 41 15 2828 3161 620574845 620574499 2.760000e-76 296.0
24 TraesCS5A01G501200 chr4B 82.583 333 46 10 2828 3150 620564876 620564546 2.150000e-72 283.0
25 TraesCS5A01G501200 chr4B 89.238 223 22 1 2828 3048 620411695 620411473 9.980000e-71 278.0
26 TraesCS5A01G501200 chr4B 92.025 163 11 1 587 749 620947580 620947420 1.020000e-55 228.0
27 TraesCS5A01G501200 chr4B 91.156 147 12 1 3143 3288 94842674 94842820 7.990000e-47 198.0
28 TraesCS5A01G501200 chr4B 91.034 145 10 3 2906 3048 620539881 620539738 3.720000e-45 193.0
29 TraesCS5A01G501200 chr4B 94.444 72 1 1 2705 2776 620411766 620411698 1.390000e-19 108.0
30 TraesCS5A01G501200 chr4B 94.444 72 1 1 2705 2776 620564947 620564879 1.390000e-19 108.0
31 TraesCS5A01G501200 chr4B 93.056 72 2 1 2705 2776 620495204 620495136 6.450000e-18 102.0
32 TraesCS5A01G501200 chr4B 90.278 72 4 1 2705 2776 620574916 620574848 1.400000e-14 91.6
33 TraesCS5A01G501200 chr4B 91.935 62 0 3 2698 2758 620945091 620945034 8.400000e-12 82.4
34 TraesCS5A01G501200 chr6B 78.183 1178 212 31 1472 2622 56050186 56049027 0.000000e+00 710.0
35 TraesCS5A01G501200 chr6B 89.610 154 15 1 3146 3299 712191327 712191479 1.030000e-45 195.0
36 TraesCS5A01G501200 chr6B 82.390 159 24 3 431 586 593070424 593070581 6.360000e-28 135.0
37 TraesCS5A01G501200 chr6B 79.518 166 25 8 426 586 638240794 638240955 3.850000e-20 110.0
38 TraesCS5A01G501200 chrUn 75.975 1461 268 55 1223 2622 103934599 103933161 0.000000e+00 676.0
39 TraesCS5A01G501200 chrUn 92.199 141 11 0 3149 3289 37160808 37160948 2.220000e-47 200.0
40 TraesCS5A01G501200 chr6A 77.589 1178 219 30 1472 2622 31369090 31367931 0.000000e+00 671.0
41 TraesCS5A01G501200 chr6A 92.806 139 10 0 3149 3287 107694578 107694440 6.180000e-48 202.0
42 TraesCS5A01G501200 chr6A 90.667 150 12 2 3143 3290 115497633 115497484 7.990000e-47 198.0
43 TraesCS5A01G501200 chr6A 89.610 154 14 2 3143 3294 584038588 584038435 1.030000e-45 195.0
44 TraesCS5A01G501200 chr6A 92.647 68 5 0 1 68 30427236 30427169 8.340000e-17 99.0
45 TraesCS5A01G501200 chr6A 95.161 62 3 0 1 62 599917280 599917341 8.340000e-17 99.0
46 TraesCS5A01G501200 chr6A 98.077 52 1 0 3599 3650 591797064 591797115 1.400000e-14 91.6
47 TraesCS5A01G501200 chr1D 87.833 526 49 8 75 586 476818846 476819370 1.450000e-168 603.0
48 TraesCS5A01G501200 chr1D 92.361 144 9 2 3149 3290 494167450 494167593 1.720000e-48 204.0
49 TraesCS5A01G501200 chr7A 86.907 527 52 9 75 586 728723392 728722868 3.160000e-160 575.0
50 TraesCS5A01G501200 chr7A 86.502 526 56 7 75 586 728848804 728848280 6.840000e-157 564.0
51 TraesCS5A01G501200 chr7A 89.706 136 11 1 454 586 50814859 50814994 1.740000e-38 171.0
52 TraesCS5A01G501200 chr7A 100.000 52 0 0 3599 3650 630693093 630693144 3.000000e-16 97.1
53 TraesCS5A01G501200 chr7A 100.000 52 0 0 3599 3650 647856116 647856065 3.000000e-16 97.1
54 TraesCS5A01G501200 chr7A 100.000 51 0 0 3600 3650 245597716 245597666 1.080000e-15 95.3
55 TraesCS5A01G501200 chr7A 90.323 62 6 0 1 62 54965524 54965463 8.400000e-12 82.4
56 TraesCS5A01G501200 chr2B 84.952 525 64 7 76 586 5711508 5712031 5.400000e-143 518.0
57 TraesCS5A01G501200 chr2B 88.084 428 43 7 75 499 749925281 749924859 5.440000e-138 501.0
58 TraesCS5A01G501200 chr2B 83.080 526 73 8 75 586 625180740 625181263 7.140000e-127 464.0
59 TraesCS5A01G501200 chr2B 91.156 147 11 2 3143 3287 531145116 531145262 7.990000e-47 198.0
60 TraesCS5A01G501200 chr2B 98.077 52 1 0 3599 3650 784699774 784699723 1.400000e-14 91.6
61 TraesCS5A01G501200 chr7D 84.411 526 64 9 75 586 178883947 178884468 5.440000e-138 501.0
62 TraesCS5A01G501200 chr5B 84.000 525 68 8 76 586 710357653 710357131 1.180000e-134 490.0
63 TraesCS5A01G501200 chr4A 83.650 526 71 11 75 586 659231218 659231742 7.090000e-132 481.0
64 TraesCS5A01G501200 chr3B 92.361 144 9 2 3149 3290 8462862 8462719 1.720000e-48 204.0
65 TraesCS5A01G501200 chr3B 82.143 84 10 4 742 824 676970810 676970889 2.350000e-07 67.6
66 TraesCS5A01G501200 chr5D 81.522 184 18 7 418 586 429735875 429735693 1.770000e-28 137.0
67 TraesCS5A01G501200 chr5D 80.874 183 21 5 418 586 429734759 429734577 8.220000e-27 132.0
68 TraesCS5A01G501200 chr5D 80.874 183 21 5 418 586 429735317 429735135 8.220000e-27 132.0
69 TraesCS5A01G501200 chr5D 80.874 183 21 5 418 586 429736433 429736251 8.220000e-27 132.0
70 TraesCS5A01G501200 chr5D 80.874 183 21 5 418 586 429736992 429736810 8.220000e-27 132.0
71 TraesCS5A01G501200 chr1A 96.825 63 2 0 3588 3650 10479867 10479805 4.980000e-19 106.0
72 TraesCS5A01G501200 chr3D 96.774 62 2 0 1 62 45554461 45554522 1.790000e-18 104.0
73 TraesCS5A01G501200 chr2A 100.000 53 0 0 3598 3650 679462458 679462406 8.340000e-17 99.0
74 TraesCS5A01G501200 chr2D 98.000 50 1 0 1 50 543453999 543454048 1.810000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G501200 chr5A 666749479 666753128 3649 True 6741.000000 6741 100.000000 1 3650 1 chr5A.!!$R2 3649
1 TraesCS5A01G501200 chr5A 666872658 666874101 1443 True 905.000000 905 78.297000 1198 2629 1 chr5A.!!$R3 1431
2 TraesCS5A01G501200 chr5A 667067580 667069010 1430 False 876.000000 876 78.032000 1198 2616 1 chr5A.!!$F2 1418
3 TraesCS5A01G501200 chr4D 486431820 486434208 2388 False 3640.000000 3640 94.329000 587 2955 1 chr4D.!!$F1 2368
4 TraesCS5A01G501200 chr4D 486621735 486623186 1451 True 876.000000 876 77.982000 1222 2655 1 chr4D.!!$R2 1433
5 TraesCS5A01G501200 chr4B 621279747 621281177 1430 False 854.000000 854 77.785000 1198 2616 1 chr4B.!!$F2 1418
6 TraesCS5A01G501200 chr4B 620940193 620947580 7387 True 824.680000 3110 92.093600 587 3598 5 chr4B.!!$R10 3011
7 TraesCS5A01G501200 chr4B 620370002 620370623 621 True 337.500000 351 86.180000 2822 3598 2 chr4B.!!$R5 776
8 TraesCS5A01G501200 chr4B 620494516 620495204 688 True 258.000000 363 88.411000 2705 3598 3 chr4B.!!$R7 893
9 TraesCS5A01G501200 chr4B 620564260 620564947 687 True 247.333333 351 88.325000 2705 3598 3 chr4B.!!$R8 893
10 TraesCS5A01G501200 chr4B 620411079 620411766 687 True 235.333333 320 89.970667 2705 3598 3 chr4B.!!$R6 893
11 TraesCS5A01G501200 chr6B 56049027 56050186 1159 True 710.000000 710 78.183000 1472 2622 1 chr6B.!!$R1 1150
12 TraesCS5A01G501200 chrUn 103933161 103934599 1438 True 676.000000 676 75.975000 1223 2622 1 chrUn.!!$R1 1399
13 TraesCS5A01G501200 chr6A 31367931 31369090 1159 True 671.000000 671 77.589000 1472 2622 1 chr6A.!!$R2 1150
14 TraesCS5A01G501200 chr1D 476818846 476819370 524 False 603.000000 603 87.833000 75 586 1 chr1D.!!$F1 511
15 TraesCS5A01G501200 chr7A 728722868 728723392 524 True 575.000000 575 86.907000 75 586 1 chr7A.!!$R4 511
16 TraesCS5A01G501200 chr7A 728848280 728848804 524 True 564.000000 564 86.502000 75 586 1 chr7A.!!$R5 511
17 TraesCS5A01G501200 chr2B 5711508 5712031 523 False 518.000000 518 84.952000 76 586 1 chr2B.!!$F1 510
18 TraesCS5A01G501200 chr2B 625180740 625181263 523 False 464.000000 464 83.080000 75 586 1 chr2B.!!$F3 511
19 TraesCS5A01G501200 chr7D 178883947 178884468 521 False 501.000000 501 84.411000 75 586 1 chr7D.!!$F1 511
20 TraesCS5A01G501200 chr5B 710357131 710357653 522 True 490.000000 490 84.000000 76 586 1 chr5B.!!$R1 510
21 TraesCS5A01G501200 chr4A 659231218 659231742 524 False 481.000000 481 83.650000 75 586 1 chr4A.!!$F1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 323 0.041576 GTTGCCGGTTCGAAACTCAC 60.042 55.000 12.14 0.77 0.0 3.51 F
403 404 0.390860 AGACGCACACTCTTCTTGCT 59.609 50.000 0.00 0.00 33.9 3.91 F
457 458 0.608130 ACGCTGGCATGTCTAGTCAA 59.392 50.000 0.00 0.00 0.0 3.18 F
1968 2226 1.373748 CGGGTTCAACGTCGTCCAT 60.374 57.895 0.00 0.00 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 2187 0.106819 GCTCATCCATCTTGGCCAGT 60.107 55.000 5.11 0.0 37.47 4.00 R
1944 2202 1.006571 GACGTTGAACCCGAGCTCA 60.007 57.895 15.40 0.0 0.00 4.26 R
2163 2424 1.078848 GTTCCCTCGCAGCATGACT 60.079 57.895 0.00 0.0 39.69 3.41 R
3612 8152 0.036875 CCCACCCTCCAGTTTCTGTC 59.963 60.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.609853 AGTTATGTGACCGCAATGATGT 58.390 40.909 0.00 0.00 0.00 3.06
22 23 4.765273 AGTTATGTGACCGCAATGATGTA 58.235 39.130 0.00 0.00 0.00 2.29
23 24 5.368145 AGTTATGTGACCGCAATGATGTAT 58.632 37.500 0.00 0.00 0.00 2.29
24 25 5.822519 AGTTATGTGACCGCAATGATGTATT 59.177 36.000 0.00 0.00 0.00 1.89
25 26 6.318648 AGTTATGTGACCGCAATGATGTATTT 59.681 34.615 0.00 0.00 0.00 1.40
26 27 5.581126 ATGTGACCGCAATGATGTATTTT 57.419 34.783 0.00 0.00 0.00 1.82
27 28 6.691754 ATGTGACCGCAATGATGTATTTTA 57.308 33.333 0.00 0.00 0.00 1.52
28 29 5.874831 TGTGACCGCAATGATGTATTTTAC 58.125 37.500 0.00 0.00 0.00 2.01
29 30 5.412904 TGTGACCGCAATGATGTATTTTACA 59.587 36.000 0.00 0.00 43.80 2.41
30 31 6.072452 TGTGACCGCAATGATGTATTTTACAA 60.072 34.615 0.00 0.00 42.76 2.41
31 32 6.250527 GTGACCGCAATGATGTATTTTACAAC 59.749 38.462 0.00 0.00 42.76 3.32
32 33 6.150307 TGACCGCAATGATGTATTTTACAACT 59.850 34.615 0.00 0.00 42.76 3.16
33 34 6.919721 ACCGCAATGATGTATTTTACAACTT 58.080 32.000 0.00 0.00 42.76 2.66
34 35 7.375053 ACCGCAATGATGTATTTTACAACTTT 58.625 30.769 0.00 0.00 42.76 2.66
35 36 7.870445 ACCGCAATGATGTATTTTACAACTTTT 59.130 29.630 0.00 0.00 42.76 2.27
36 37 9.347934 CCGCAATGATGTATTTTACAACTTTTA 57.652 29.630 0.00 0.00 42.76 1.52
41 42 9.855021 ATGATGTATTTTACAACTTTTAGCACC 57.145 29.630 0.00 0.00 42.76 5.01
42 43 8.851145 TGATGTATTTTACAACTTTTAGCACCA 58.149 29.630 0.00 0.00 42.76 4.17
43 44 9.685828 GATGTATTTTACAACTTTTAGCACCAA 57.314 29.630 0.00 0.00 42.76 3.67
45 46 9.303537 TGTATTTTACAACTTTTAGCACCAAAC 57.696 29.630 0.00 0.00 35.38 2.93
46 47 9.524106 GTATTTTACAACTTTTAGCACCAAACT 57.476 29.630 0.00 0.00 0.00 2.66
47 48 7.820044 TTTTACAACTTTTAGCACCAAACTG 57.180 32.000 0.00 0.00 0.00 3.16
48 49 6.761099 TTACAACTTTTAGCACCAAACTGA 57.239 33.333 0.00 0.00 0.00 3.41
49 50 5.652994 ACAACTTTTAGCACCAAACTGAA 57.347 34.783 0.00 0.00 0.00 3.02
50 51 5.407502 ACAACTTTTAGCACCAAACTGAAC 58.592 37.500 0.00 0.00 0.00 3.18
51 52 5.047660 ACAACTTTTAGCACCAAACTGAACA 60.048 36.000 0.00 0.00 0.00 3.18
52 53 5.852282 ACTTTTAGCACCAAACTGAACAT 57.148 34.783 0.00 0.00 0.00 2.71
53 54 5.831997 ACTTTTAGCACCAAACTGAACATC 58.168 37.500 0.00 0.00 0.00 3.06
54 55 5.359576 ACTTTTAGCACCAAACTGAACATCA 59.640 36.000 0.00 0.00 0.00 3.07
55 56 6.040842 ACTTTTAGCACCAAACTGAACATCAT 59.959 34.615 0.00 0.00 0.00 2.45
56 57 7.230510 ACTTTTAGCACCAAACTGAACATCATA 59.769 33.333 0.00 0.00 0.00 2.15
57 58 7.701539 TTTAGCACCAAACTGAACATCATAT 57.298 32.000 0.00 0.00 0.00 1.78
58 59 5.571784 AGCACCAAACTGAACATCATATG 57.428 39.130 0.00 0.00 0.00 1.78
59 60 4.107622 GCACCAAACTGAACATCATATGC 58.892 43.478 0.00 0.00 0.00 3.14
60 61 4.380761 GCACCAAACTGAACATCATATGCA 60.381 41.667 0.00 0.00 0.00 3.96
61 62 5.712004 CACCAAACTGAACATCATATGCAA 58.288 37.500 0.00 0.00 0.00 4.08
62 63 5.574055 CACCAAACTGAACATCATATGCAAC 59.426 40.000 0.00 0.00 0.00 4.17
63 64 5.477984 ACCAAACTGAACATCATATGCAACT 59.522 36.000 0.00 0.00 0.00 3.16
64 65 6.015180 ACCAAACTGAACATCATATGCAACTT 60.015 34.615 0.00 0.00 0.00 2.66
65 66 6.869913 CCAAACTGAACATCATATGCAACTTT 59.130 34.615 0.00 0.00 0.00 2.66
66 67 7.385752 CCAAACTGAACATCATATGCAACTTTT 59.614 33.333 0.00 0.00 0.00 2.27
67 68 9.409312 CAAACTGAACATCATATGCAACTTTTA 57.591 29.630 0.00 0.00 0.00 1.52
68 69 9.630098 AAACTGAACATCATATGCAACTTTTAG 57.370 29.630 0.00 0.00 0.00 1.85
69 70 8.340618 ACTGAACATCATATGCAACTTTTAGT 57.659 30.769 0.00 0.00 0.00 2.24
70 71 9.448438 ACTGAACATCATATGCAACTTTTAGTA 57.552 29.630 0.00 0.00 0.00 1.82
71 72 9.708222 CTGAACATCATATGCAACTTTTAGTAC 57.292 33.333 0.00 0.00 0.00 2.73
72 73 8.673711 TGAACATCATATGCAACTTTTAGTACC 58.326 33.333 0.00 0.00 0.00 3.34
73 74 8.807948 AACATCATATGCAACTTTTAGTACCT 57.192 30.769 0.00 0.00 0.00 3.08
241 242 4.106909 CGGATATGTACAACGTTGCAGTA 58.893 43.478 27.61 15.31 0.00 2.74
253 254 4.440851 CGTTGCAGTACGTAAAAGACAA 57.559 40.909 0.00 0.00 36.80 3.18
258 259 6.366315 TGCAGTACGTAAAAGACAACAAAT 57.634 33.333 0.00 0.00 0.00 2.32
269 270 4.535526 AGACAACAAATTTACATGGGGC 57.464 40.909 0.00 0.00 0.00 5.80
271 272 4.346418 AGACAACAAATTTACATGGGGCAA 59.654 37.500 0.00 0.00 0.00 4.52
273 274 6.212388 AGACAACAAATTTACATGGGGCAATA 59.788 34.615 0.00 0.00 0.00 1.90
302 303 0.895100 ATGTCCTTTGTGGCGCACAT 60.895 50.000 10.83 4.64 44.16 3.21
305 306 1.106351 TCCTTTGTGGCGCACATGTT 61.106 50.000 10.83 0.00 44.16 2.71
322 323 0.041576 GTTGCCGGTTCGAAACTCAC 60.042 55.000 12.14 0.77 0.00 3.51
325 326 2.025418 CCGGTTCGAAACTCACCCG 61.025 63.158 12.14 13.15 35.32 5.28
331 332 0.462225 TCGAAACTCACCCGTGCAAA 60.462 50.000 0.00 0.00 0.00 3.68
336 337 3.535280 AACTCACCCGTGCAAATTTTT 57.465 38.095 0.00 0.00 0.00 1.94
402 403 0.787183 GAGACGCACACTCTTCTTGC 59.213 55.000 0.00 0.00 0.00 4.01
403 404 0.390860 AGACGCACACTCTTCTTGCT 59.609 50.000 0.00 0.00 33.90 3.91
457 458 0.608130 ACGCTGGCATGTCTAGTCAA 59.392 50.000 0.00 0.00 0.00 3.18
496 498 9.988815 ATCTAGACATGATTTGAACCATACTAC 57.011 33.333 0.00 0.00 0.00 2.73
497 499 8.421784 TCTAGACATGATTTGAACCATACTACC 58.578 37.037 0.00 0.00 0.00 3.18
499 501 7.402054 AGACATGATTTGAACCATACTACCAA 58.598 34.615 0.00 0.00 0.00 3.67
500 502 7.554118 AGACATGATTTGAACCATACTACCAAG 59.446 37.037 0.00 0.00 0.00 3.61
506 522 9.099454 GATTTGAACCATACTACCAAGTAGAAG 57.901 37.037 8.70 0.00 41.46 2.85
530 546 7.078228 AGCAGTTCGATGTATTTTTCAAGTTC 58.922 34.615 0.00 0.00 0.00 3.01
539 555 6.680810 TGTATTTTTCAAGTTCAGGCATCAG 58.319 36.000 0.00 0.00 0.00 2.90
541 557 5.850557 TTTTTCAAGTTCAGGCATCAGAA 57.149 34.783 0.00 0.00 0.00 3.02
558 574 4.009002 TCAGAATGAACATCGATGGCAAA 58.991 39.130 28.09 11.89 45.97 3.68
563 579 7.650504 CAGAATGAACATCGATGGCAAATTTAT 59.349 33.333 28.09 12.59 39.69 1.40
600 616 7.672660 TGTTATTACCTCCTCAAAGTCTCACTA 59.327 37.037 0.00 0.00 0.00 2.74
610 626 6.990349 CCTCAAAGTCTCACTAAAAGTTACCA 59.010 38.462 0.00 0.00 0.00 3.25
612 628 7.562135 TCAAAGTCTCACTAAAAGTTACCAGT 58.438 34.615 0.00 0.00 0.00 4.00
641 657 3.561313 GGTTCTAACAATCAAGGGGCTGA 60.561 47.826 0.00 0.00 0.00 4.26
792 991 2.096496 GCCAGCTGCAAGTAGTACATTG 59.904 50.000 8.66 5.73 40.77 2.82
801 1000 6.463360 TGCAAGTAGTACATTGTTCATCTGA 58.537 36.000 2.52 0.00 0.00 3.27
815 1014 6.487828 TGTTCATCTGAAAAGGAGATTCCAT 58.512 36.000 0.00 0.00 35.81 3.41
861 1060 8.696410 TTGTTGAAGTTCCTTGTTTTAATCAC 57.304 30.769 0.00 0.00 0.00 3.06
873 1072 4.152580 TGTTTTAATCACGCAACGCTATCA 59.847 37.500 0.00 0.00 0.00 2.15
874 1073 5.163804 TGTTTTAATCACGCAACGCTATCAT 60.164 36.000 0.00 0.00 0.00 2.45
875 1074 6.036191 TGTTTTAATCACGCAACGCTATCATA 59.964 34.615 0.00 0.00 0.00 2.15
876 1075 6.779115 TTTAATCACGCAACGCTATCATAT 57.221 33.333 0.00 0.00 0.00 1.78
877 1076 4.910746 AATCACGCAACGCTATCATATC 57.089 40.909 0.00 0.00 0.00 1.63
936 1135 8.362464 AGATTAATCCGCATGTTACCTCTATA 57.638 34.615 11.92 0.00 0.00 1.31
1675 1927 2.367202 ATGCCGGTGTACCTCTGGG 61.367 63.158 1.90 0.00 38.88 4.45
1707 1959 2.901840 CACTGCAACGGCTGGTGT 60.902 61.111 13.22 0.00 42.66 4.16
1788 2040 1.807573 GAAGGCCGTCTTCGAGCAG 60.808 63.158 11.87 0.00 41.95 4.24
1806 2058 4.329545 ATCGTGCGGCACAGGGTT 62.330 61.111 30.23 8.79 33.40 4.11
1809 2061 2.032071 GTGCGGCACAGGGTTACT 59.968 61.111 27.10 0.00 34.08 2.24
1944 2202 2.750807 GCACATACTGGCCAAGATGGAT 60.751 50.000 23.77 6.55 40.96 3.41
1968 2226 1.373748 CGGGTTCAACGTCGTCCAT 60.374 57.895 0.00 0.00 0.00 3.41
2172 2433 2.743752 CGTGGGCGAAGTCATGCTG 61.744 63.158 0.00 0.00 41.33 4.41
2603 2870 1.204941 GTATCTGCTCCGTGACAAGGT 59.795 52.381 7.33 0.00 0.00 3.50
2618 2885 1.224003 AAGGTCAGGGCCATGGGAAT 61.224 55.000 18.94 0.00 0.00 3.01
2633 2906 1.475930 GGGAATCCTGCCTAAGCTGAC 60.476 57.143 0.00 0.00 40.18 3.51
2813 4506 2.064581 GCCCCGTACACTGATCCCT 61.065 63.158 0.00 0.00 0.00 4.20
2855 4551 7.926674 AAGGATTTTATGGCCTGAAAAATTG 57.073 32.000 18.20 0.00 33.99 2.32
2901 4597 9.240734 GGGCATACTAGTGTACTATAACTATGT 57.759 37.037 5.39 0.00 0.00 2.29
2971 4671 1.452108 CAGTGGGAGGAAATCGGCC 60.452 63.158 0.00 0.00 0.00 6.13
3012 4712 6.546428 TCTTTTGACTCAAGATACTAGGGG 57.454 41.667 0.00 0.00 0.00 4.79
3020 4720 2.693591 CAAGATACTAGGGGCGAGTTCA 59.306 50.000 0.00 0.00 0.00 3.18
3048 4748 4.142643 ACTCGACTCTAAAGAATCACGGTC 60.143 45.833 0.00 0.00 0.00 4.79
3049 4749 4.008330 TCGACTCTAAAGAATCACGGTCT 58.992 43.478 0.00 0.00 0.00 3.85
3050 4750 4.099120 CGACTCTAAAGAATCACGGTCTG 58.901 47.826 0.00 0.00 0.00 3.51
3051 4751 4.425520 GACTCTAAAGAATCACGGTCTGG 58.574 47.826 0.00 0.00 0.00 3.86
3052 4752 3.195825 ACTCTAAAGAATCACGGTCTGGG 59.804 47.826 0.00 0.00 0.00 4.45
3065 4779 0.526211 GTCTGGGGAATCAAAACCGC 59.474 55.000 0.00 0.00 39.15 5.68
3067 4781 0.965439 CTGGGGAATCAAAACCGCAA 59.035 50.000 0.00 0.00 45.66 4.85
3070 4784 2.224161 TGGGGAATCAAAACCGCAAAAG 60.224 45.455 0.00 0.00 44.01 2.27
3071 4785 2.036604 GGGGAATCAAAACCGCAAAAGA 59.963 45.455 0.00 0.00 38.66 2.52
3073 4787 3.740832 GGGAATCAAAACCGCAAAAGAAG 59.259 43.478 0.00 0.00 0.00 2.85
3074 4788 4.368315 GGAATCAAAACCGCAAAAGAAGT 58.632 39.130 0.00 0.00 0.00 3.01
3075 4789 4.444388 GGAATCAAAACCGCAAAAGAAGTC 59.556 41.667 0.00 0.00 0.00 3.01
3076 4790 4.647424 ATCAAAACCGCAAAAGAAGTCA 57.353 36.364 0.00 0.00 0.00 3.41
3077 4791 4.647424 TCAAAACCGCAAAAGAAGTCAT 57.353 36.364 0.00 0.00 0.00 3.06
3079 4793 5.415221 TCAAAACCGCAAAAGAAGTCATTT 58.585 33.333 0.00 0.00 0.00 2.32
3080 4794 5.518487 TCAAAACCGCAAAAGAAGTCATTTC 59.482 36.000 0.00 0.00 35.97 2.17
3083 4797 3.632145 ACCGCAAAAGAAGTCATTTCTGT 59.368 39.130 0.00 0.00 45.41 3.41
3085 4799 3.423206 CGCAAAAGAAGTCATTTCTGTGC 59.577 43.478 8.18 8.18 45.41 4.57
3086 4800 4.362279 GCAAAAGAAGTCATTTCTGTGCA 58.638 39.130 11.79 0.00 46.74 4.57
3087 4801 4.805192 GCAAAAGAAGTCATTTCTGTGCAA 59.195 37.500 11.79 0.00 46.74 4.08
3088 4802 5.051240 GCAAAAGAAGTCATTTCTGTGCAAG 60.051 40.000 11.79 0.00 46.74 4.01
3089 4803 6.267817 CAAAAGAAGTCATTTCTGTGCAAGA 58.732 36.000 0.00 0.00 45.41 3.02
3090 4804 6.455360 AAAGAAGTCATTTCTGTGCAAGAA 57.545 33.333 7.09 7.09 45.41 2.52
3114 6473 8.908786 AAATCGGCTAGAATCATTCAAGAATA 57.091 30.769 0.00 0.00 0.00 1.75
3115 6474 8.545229 AATCGGCTAGAATCATTCAAGAATAG 57.455 34.615 0.00 0.00 0.00 1.73
3136 6495 5.663795 AGCAGTGCATTTTAGTATCATCG 57.336 39.130 19.20 0.00 0.00 3.84
3138 6497 5.817296 AGCAGTGCATTTTAGTATCATCGAA 59.183 36.000 19.20 0.00 0.00 3.71
3140 6499 6.576313 GCAGTGCATTTTAGTATCATCGAATG 59.424 38.462 11.09 0.00 0.00 2.67
3142 6501 8.124823 CAGTGCATTTTAGTATCATCGAATGTT 58.875 33.333 0.00 0.00 0.00 2.71
3143 6502 8.124823 AGTGCATTTTAGTATCATCGAATGTTG 58.875 33.333 0.00 0.00 0.00 3.33
3144 6503 7.376866 GTGCATTTTAGTATCATCGAATGTTGG 59.623 37.037 0.00 0.00 0.00 3.77
3146 6505 7.376866 GCATTTTAGTATCATCGAATGTTGGTG 59.623 37.037 0.00 0.00 0.00 4.17
3150 6509 6.422776 AGTATCATCGAATGTTGGTGTTTC 57.577 37.500 0.00 0.00 0.00 2.78
3151 6510 6.173339 AGTATCATCGAATGTTGGTGTTTCT 58.827 36.000 0.00 0.00 0.00 2.52
3152 6511 5.964958 ATCATCGAATGTTGGTGTTTCTT 57.035 34.783 0.00 0.00 0.00 2.52
3156 6515 7.881142 TCATCGAATGTTGGTGTTTCTTAAAT 58.119 30.769 0.00 0.00 0.00 1.40
3157 6516 8.020819 TCATCGAATGTTGGTGTTTCTTAAATC 58.979 33.333 0.00 0.00 0.00 2.17
3158 6517 7.504924 TCGAATGTTGGTGTTTCTTAAATCT 57.495 32.000 0.00 0.00 0.00 2.40
3159 6518 7.581476 TCGAATGTTGGTGTTTCTTAAATCTC 58.419 34.615 0.00 0.00 0.00 2.75
3160 6519 7.227711 TCGAATGTTGGTGTTTCTTAAATCTCA 59.772 33.333 0.00 0.00 0.00 3.27
3161 6520 7.860373 CGAATGTTGGTGTTTCTTAAATCTCAA 59.140 33.333 0.00 0.00 0.00 3.02
3162 6521 9.185192 GAATGTTGGTGTTTCTTAAATCTCAAG 57.815 33.333 0.00 0.00 0.00 3.02
3163 6522 7.873719 TGTTGGTGTTTCTTAAATCTCAAGA 57.126 32.000 0.00 0.00 0.00 3.02
3164 6523 8.463930 TGTTGGTGTTTCTTAAATCTCAAGAT 57.536 30.769 0.00 0.00 32.27 2.40
3174 6533 8.777865 TCTTAAATCTCAAGATAATATGCCGG 57.222 34.615 0.00 0.00 33.73 6.13
3175 6534 5.886960 AAATCTCAAGATAATATGCCGGC 57.113 39.130 22.73 22.73 33.73 6.13
3176 6535 4.833478 ATCTCAAGATAATATGCCGGCT 57.167 40.909 29.70 15.76 32.01 5.52
3177 6536 4.193826 TCTCAAGATAATATGCCGGCTC 57.806 45.455 29.70 15.82 0.00 4.70
3178 6537 3.578282 TCTCAAGATAATATGCCGGCTCA 59.422 43.478 29.70 15.91 0.00 4.26
3179 6538 4.040339 TCTCAAGATAATATGCCGGCTCAA 59.960 41.667 29.70 13.42 0.00 3.02
3180 6539 4.910195 TCAAGATAATATGCCGGCTCAAT 58.090 39.130 29.70 15.81 0.00 2.57
3182 6541 5.769662 TCAAGATAATATGCCGGCTCAATTT 59.230 36.000 29.70 15.74 0.00 1.82
3184 6543 6.655078 AGATAATATGCCGGCTCAATTTTT 57.345 33.333 29.70 14.09 0.00 1.94
3185 6544 6.681777 AGATAATATGCCGGCTCAATTTTTC 58.318 36.000 29.70 20.23 0.00 2.29
3187 6546 0.173255 ATGCCGGCTCAATTTTTCGG 59.827 50.000 29.70 0.00 43.13 4.30
3188 6547 0.891449 TGCCGGCTCAATTTTTCGGA 60.891 50.000 29.70 0.00 42.94 4.55
3189 6548 0.179163 GCCGGCTCAATTTTTCGGAG 60.179 55.000 22.15 0.00 42.94 4.63
3190 6549 0.451783 CCGGCTCAATTTTTCGGAGG 59.548 55.000 0.00 0.00 42.94 4.30
3191 6550 1.165270 CGGCTCAATTTTTCGGAGGT 58.835 50.000 0.00 0.00 0.00 3.85
3192 6551 1.135689 CGGCTCAATTTTTCGGAGGTG 60.136 52.381 0.00 0.00 0.00 4.00
3193 6552 1.402852 GGCTCAATTTTTCGGAGGTGC 60.403 52.381 0.00 0.00 0.00 5.01
3195 6554 2.414691 GCTCAATTTTTCGGAGGTGCTC 60.415 50.000 0.00 0.00 0.00 4.26
3196 6555 2.813754 CTCAATTTTTCGGAGGTGCTCA 59.186 45.455 0.00 0.00 31.08 4.26
3197 6556 3.420893 TCAATTTTTCGGAGGTGCTCAT 58.579 40.909 0.00 0.00 31.08 2.90
3198 6557 4.584874 TCAATTTTTCGGAGGTGCTCATA 58.415 39.130 0.00 0.00 31.08 2.15
3199 6558 5.007034 TCAATTTTTCGGAGGTGCTCATAA 58.993 37.500 0.00 0.00 31.08 1.90
3200 6559 5.123820 TCAATTTTTCGGAGGTGCTCATAAG 59.876 40.000 0.00 0.00 31.08 1.73
3201 6560 2.691409 TTTCGGAGGTGCTCATAAGG 57.309 50.000 0.00 0.00 31.08 2.69
3202 6561 1.860641 TTCGGAGGTGCTCATAAGGA 58.139 50.000 0.00 0.00 31.08 3.36
3204 6563 3.238788 TCGGAGGTGCTCATAAGGATA 57.761 47.619 0.00 0.00 31.08 2.59
3206 6565 3.511540 TCGGAGGTGCTCATAAGGATATG 59.488 47.826 0.00 0.00 40.29 1.78
3207 6566 3.511540 CGGAGGTGCTCATAAGGATATGA 59.488 47.826 0.00 0.00 44.38 2.15
3210 6569 5.046014 GGAGGTGCTCATAAGGATATGATGT 60.046 44.000 0.00 0.00 45.20 3.06
3211 6570 5.802465 AGGTGCTCATAAGGATATGATGTG 58.198 41.667 0.00 0.00 45.20 3.21
3212 6571 4.394300 GGTGCTCATAAGGATATGATGTGC 59.606 45.833 0.00 0.00 45.20 4.57
3213 6572 4.092529 GTGCTCATAAGGATATGATGTGCG 59.907 45.833 0.00 0.00 45.20 5.34
3215 6574 4.092529 GCTCATAAGGATATGATGTGCGTG 59.907 45.833 0.00 0.00 45.20 5.34
3216 6575 5.213891 TCATAAGGATATGATGTGCGTGT 57.786 39.130 0.00 0.00 42.30 4.49
3217 6576 4.990426 TCATAAGGATATGATGTGCGTGTG 59.010 41.667 0.00 0.00 42.30 3.82
3218 6577 2.988010 AGGATATGATGTGCGTGTGT 57.012 45.000 0.00 0.00 0.00 3.72
3219 6578 4.400529 AAGGATATGATGTGCGTGTGTA 57.599 40.909 0.00 0.00 0.00 2.90
3220 6579 3.717707 AGGATATGATGTGCGTGTGTAC 58.282 45.455 0.00 0.00 0.00 2.90
3232 6591 3.431922 CGTGTGTACGTTCATAGGGAT 57.568 47.619 0.00 0.00 44.99 3.85
3234 6593 3.181494 CGTGTGTACGTTCATAGGGATGA 60.181 47.826 0.00 0.00 44.99 2.92
3235 6594 4.360563 GTGTGTACGTTCATAGGGATGAG 58.639 47.826 0.00 0.00 43.03 2.90
3237 6596 4.142249 TGTGTACGTTCATAGGGATGAGTG 60.142 45.833 0.00 0.00 43.03 3.51
3238 6597 4.021229 TGTACGTTCATAGGGATGAGTGT 58.979 43.478 0.00 0.00 43.03 3.55
3239 6598 5.066893 GTGTACGTTCATAGGGATGAGTGTA 59.933 44.000 0.00 0.00 43.03 2.90
3240 6599 5.831525 TGTACGTTCATAGGGATGAGTGTAT 59.168 40.000 0.00 0.00 43.03 2.29
3242 6601 6.328641 ACGTTCATAGGGATGAGTGTATAC 57.671 41.667 0.00 0.00 43.03 1.47
3243 6602 5.048921 ACGTTCATAGGGATGAGTGTATACG 60.049 44.000 0.00 0.00 43.03 3.06
3244 6603 5.162075 GTTCATAGGGATGAGTGTATACGC 58.838 45.833 8.42 8.42 43.03 4.42
3245 6604 3.439129 TCATAGGGATGAGTGTATACGCG 59.561 47.826 3.53 3.53 37.15 6.01
3246 6605 1.688772 AGGGATGAGTGTATACGCGT 58.311 50.000 19.17 19.17 0.00 6.01
3247 6606 1.337071 AGGGATGAGTGTATACGCGTG 59.663 52.381 24.59 0.00 0.00 5.34
3248 6607 1.066605 GGGATGAGTGTATACGCGTGT 59.933 52.381 24.59 19.31 0.00 4.49
3249 6608 2.291465 GGGATGAGTGTATACGCGTGTA 59.709 50.000 24.59 18.01 34.45 2.90
3250 6609 3.057736 GGGATGAGTGTATACGCGTGTAT 60.058 47.826 24.59 23.84 43.62 2.29
3251 6610 4.154737 GGGATGAGTGTATACGCGTGTATA 59.845 45.833 24.59 21.82 41.50 1.47
3252 6611 5.163683 GGGATGAGTGTATACGCGTGTATAT 60.164 44.000 26.67 14.50 43.52 0.86
3253 6612 5.737757 GGATGAGTGTATACGCGTGTATATG 59.262 44.000 26.67 0.00 43.52 1.78
3255 6614 5.923665 TGAGTGTATACGCGTGTATATGAG 58.076 41.667 26.67 0.00 43.52 2.90
3259 6618 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
3260 6619 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
3261 6620 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
3263 6622 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
3265 6624 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
3266 6625 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
3268 6627 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
3270 6629 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
3271 6630 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
3272 6631 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
3273 6632 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
3274 6633 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
3275 6634 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
3276 6635 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
3277 6636 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
3278 6637 3.673323 CGCTTGTGTCTGTACTGATGCTA 60.673 47.826 5.69 0.00 0.00 3.49
3280 6639 4.690748 GCTTGTGTCTGTACTGATGCTAAA 59.309 41.667 5.69 0.00 0.00 1.85
3281 6640 5.179368 GCTTGTGTCTGTACTGATGCTAAAA 59.821 40.000 5.69 0.00 0.00 1.52
3322 7862 2.998949 GATTCTCACCGGCCCCTT 59.001 61.111 0.00 0.00 0.00 3.95
3338 7878 5.109210 GGCCCCTTAAAAGAAAATGATTCG 58.891 41.667 0.00 0.00 0.00 3.34
3350 7890 8.472683 AAGAAAATGATTCGTTTTCAACAACA 57.527 26.923 31.15 0.00 46.00 3.33
3371 7911 6.426646 ACAACCTCTATTGGACATCCTATC 57.573 41.667 0.00 0.00 36.82 2.08
3377 7917 6.317642 CCTCTATTGGACATCCTATCTACGAG 59.682 46.154 0.00 2.83 36.82 4.18
3385 7925 4.278669 ACATCCTATCTACGAGCGAAATGT 59.721 41.667 0.00 0.00 0.00 2.71
3425 7965 1.824852 AGGCCCAAAACGAATGAATCC 59.175 47.619 0.00 0.00 0.00 3.01
3449 7989 2.672478 CGAGAAGGCTCACGTTCATTCT 60.672 50.000 8.32 8.32 41.98 2.40
3534 8074 1.997311 CCCTGACCCAGAGGCATCA 60.997 63.158 0.00 0.00 36.11 3.07
3535 8075 1.525923 CCTGACCCAGAGGCATCAG 59.474 63.158 0.00 0.00 35.50 2.90
3536 8076 0.979709 CCTGACCCAGAGGCATCAGA 60.980 60.000 13.89 0.00 36.88 3.27
3537 8077 0.177604 CTGACCCAGAGGCATCAGAC 59.822 60.000 0.00 0.00 36.88 3.51
3538 8078 1.267574 TGACCCAGAGGCATCAGACC 61.268 60.000 0.00 0.00 36.11 3.85
3539 8079 1.977293 GACCCAGAGGCATCAGACCC 61.977 65.000 0.00 0.00 36.11 4.46
3540 8080 2.503061 CCAGAGGCATCAGACCCG 59.497 66.667 0.00 0.00 0.00 5.28
3581 8121 2.718073 GCCACACCGTCCTATCCGT 61.718 63.158 0.00 0.00 0.00 4.69
3600 8140 4.489771 GCCATCCCCGTCACCCAG 62.490 72.222 0.00 0.00 0.00 4.45
3601 8141 3.009115 CCATCCCCGTCACCCAGT 61.009 66.667 0.00 0.00 0.00 4.00
3602 8142 2.268920 CATCCCCGTCACCCAGTG 59.731 66.667 0.00 0.00 34.45 3.66
3603 8143 3.009115 ATCCCCGTCACCCAGTGG 61.009 66.667 0.63 0.63 33.87 4.00
3609 8149 3.890674 GTCACCCAGTGGCGAATC 58.109 61.111 2.61 0.00 33.87 2.52
3610 8150 1.296715 GTCACCCAGTGGCGAATCT 59.703 57.895 2.61 0.00 33.87 2.40
3611 8151 0.535335 GTCACCCAGTGGCGAATCTA 59.465 55.000 2.61 0.00 33.87 1.98
3612 8152 0.824109 TCACCCAGTGGCGAATCTAG 59.176 55.000 2.61 0.00 33.87 2.43
3613 8153 0.824109 CACCCAGTGGCGAATCTAGA 59.176 55.000 2.61 0.00 33.59 2.43
3614 8154 0.824759 ACCCAGTGGCGAATCTAGAC 59.175 55.000 2.61 0.00 33.59 2.59
3615 8155 0.824109 CCCAGTGGCGAATCTAGACA 59.176 55.000 2.61 0.00 0.00 3.41
3616 8156 1.202463 CCCAGTGGCGAATCTAGACAG 60.202 57.143 2.61 0.00 0.00 3.51
3617 8157 1.751351 CCAGTGGCGAATCTAGACAGA 59.249 52.381 0.00 0.00 34.56 3.41
3618 8158 2.166459 CCAGTGGCGAATCTAGACAGAA 59.834 50.000 0.00 0.00 33.50 3.02
3619 8159 3.368427 CCAGTGGCGAATCTAGACAGAAA 60.368 47.826 0.00 0.00 33.50 2.52
3620 8160 3.614616 CAGTGGCGAATCTAGACAGAAAC 59.385 47.826 0.00 0.00 33.50 2.78
3621 8161 3.511934 AGTGGCGAATCTAGACAGAAACT 59.488 43.478 0.00 0.00 33.50 2.66
3622 8162 3.614616 GTGGCGAATCTAGACAGAAACTG 59.385 47.826 0.00 0.00 37.52 3.16
3623 8163 3.190874 GGCGAATCTAGACAGAAACTGG 58.809 50.000 0.00 0.00 35.51 4.00
3624 8164 3.119101 GGCGAATCTAGACAGAAACTGGA 60.119 47.826 0.00 0.00 35.51 3.86
3625 8165 4.109050 GCGAATCTAGACAGAAACTGGAG 58.891 47.826 0.00 0.00 35.51 3.86
3626 8166 4.677584 CGAATCTAGACAGAAACTGGAGG 58.322 47.826 0.00 0.00 35.51 4.30
3627 8167 4.440802 CGAATCTAGACAGAAACTGGAGGG 60.441 50.000 0.00 0.00 35.51 4.30
3628 8168 3.544698 TCTAGACAGAAACTGGAGGGT 57.455 47.619 0.00 0.00 35.51 4.34
3629 8169 3.165875 TCTAGACAGAAACTGGAGGGTG 58.834 50.000 0.00 0.00 35.51 4.61
3630 8170 1.059913 AGACAGAAACTGGAGGGTGG 58.940 55.000 0.00 0.00 35.51 4.61
3631 8171 0.036875 GACAGAAACTGGAGGGTGGG 59.963 60.000 0.00 0.00 35.51 4.61
3632 8172 1.303643 CAGAAACTGGAGGGTGGGC 60.304 63.158 0.00 0.00 0.00 5.36
3633 8173 1.464198 AGAAACTGGAGGGTGGGCT 60.464 57.895 0.00 0.00 0.00 5.19
3634 8174 1.002011 GAAACTGGAGGGTGGGCTC 60.002 63.158 0.00 0.00 0.00 4.70
3635 8175 1.774217 AAACTGGAGGGTGGGCTCA 60.774 57.895 0.00 0.00 0.00 4.26
3636 8176 1.360393 AAACTGGAGGGTGGGCTCAA 61.360 55.000 0.00 0.00 0.00 3.02
3637 8177 1.360393 AACTGGAGGGTGGGCTCAAA 61.360 55.000 0.00 0.00 0.00 2.69
3638 8178 1.001641 CTGGAGGGTGGGCTCAAAG 60.002 63.158 0.00 0.00 0.00 2.77
3639 8179 2.361737 GGAGGGTGGGCTCAAAGC 60.362 66.667 0.00 0.00 41.46 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.609853 ACATCATTGCGGTCACATAACT 58.390 40.909 0.00 0.00 0.00 2.24
1 2 5.673337 ATACATCATTGCGGTCACATAAC 57.327 39.130 0.00 0.00 0.00 1.89
2 3 6.691754 AAATACATCATTGCGGTCACATAA 57.308 33.333 0.00 0.00 0.00 1.90
3 4 6.691754 AAAATACATCATTGCGGTCACATA 57.308 33.333 0.00 0.00 0.00 2.29
4 5 5.581126 AAAATACATCATTGCGGTCACAT 57.419 34.783 0.00 0.00 0.00 3.21
5 6 5.412904 TGTAAAATACATCATTGCGGTCACA 59.587 36.000 0.00 0.00 32.89 3.58
6 7 5.874831 TGTAAAATACATCATTGCGGTCAC 58.125 37.500 0.00 0.00 32.89 3.67
7 8 6.150307 AGTTGTAAAATACATCATTGCGGTCA 59.850 34.615 2.50 0.00 38.68 4.02
8 9 6.551736 AGTTGTAAAATACATCATTGCGGTC 58.448 36.000 2.50 0.00 38.68 4.79
9 10 6.509418 AGTTGTAAAATACATCATTGCGGT 57.491 33.333 2.50 0.00 38.68 5.68
10 11 7.810766 AAAGTTGTAAAATACATCATTGCGG 57.189 32.000 2.50 0.00 38.68 5.69
15 16 9.855021 GGTGCTAAAAGTTGTAAAATACATCAT 57.145 29.630 2.50 0.00 38.68 2.45
16 17 8.851145 TGGTGCTAAAAGTTGTAAAATACATCA 58.149 29.630 2.50 0.00 38.68 3.07
17 18 9.685828 TTGGTGCTAAAAGTTGTAAAATACATC 57.314 29.630 0.00 0.00 38.68 3.06
19 20 9.303537 GTTTGGTGCTAAAAGTTGTAAAATACA 57.696 29.630 0.00 0.00 36.79 2.29
20 21 9.524106 AGTTTGGTGCTAAAAGTTGTAAAATAC 57.476 29.630 0.00 0.00 0.00 1.89
21 22 9.522804 CAGTTTGGTGCTAAAAGTTGTAAAATA 57.477 29.630 0.00 0.00 0.00 1.40
22 23 8.254508 TCAGTTTGGTGCTAAAAGTTGTAAAAT 58.745 29.630 0.00 0.00 0.00 1.82
23 24 7.603651 TCAGTTTGGTGCTAAAAGTTGTAAAA 58.396 30.769 0.00 0.00 0.00 1.52
24 25 7.159322 TCAGTTTGGTGCTAAAAGTTGTAAA 57.841 32.000 0.00 0.00 0.00 2.01
25 26 6.761099 TCAGTTTGGTGCTAAAAGTTGTAA 57.239 33.333 0.00 0.00 0.00 2.41
26 27 6.151312 TGTTCAGTTTGGTGCTAAAAGTTGTA 59.849 34.615 0.00 0.00 0.00 2.41
27 28 5.047660 TGTTCAGTTTGGTGCTAAAAGTTGT 60.048 36.000 0.00 0.00 0.00 3.32
28 29 5.406649 TGTTCAGTTTGGTGCTAAAAGTTG 58.593 37.500 0.00 0.00 0.00 3.16
29 30 5.652994 TGTTCAGTTTGGTGCTAAAAGTT 57.347 34.783 0.00 0.00 0.00 2.66
30 31 5.359576 TGATGTTCAGTTTGGTGCTAAAAGT 59.640 36.000 0.00 0.00 0.00 2.66
31 32 5.830912 TGATGTTCAGTTTGGTGCTAAAAG 58.169 37.500 0.00 0.00 0.00 2.27
32 33 5.843673 TGATGTTCAGTTTGGTGCTAAAA 57.156 34.783 0.00 0.00 0.00 1.52
33 34 7.537715 CATATGATGTTCAGTTTGGTGCTAAA 58.462 34.615 0.00 0.00 0.00 1.85
34 35 6.404623 GCATATGATGTTCAGTTTGGTGCTAA 60.405 38.462 6.97 0.00 0.00 3.09
35 36 5.066375 GCATATGATGTTCAGTTTGGTGCTA 59.934 40.000 6.97 0.00 0.00 3.49
36 37 4.142315 GCATATGATGTTCAGTTTGGTGCT 60.142 41.667 6.97 0.00 0.00 4.40
37 38 4.107622 GCATATGATGTTCAGTTTGGTGC 58.892 43.478 6.97 0.00 0.00 5.01
38 39 5.313520 TGCATATGATGTTCAGTTTGGTG 57.686 39.130 6.97 0.00 0.00 4.17
39 40 5.477984 AGTTGCATATGATGTTCAGTTTGGT 59.522 36.000 6.97 0.00 0.00 3.67
40 41 5.957798 AGTTGCATATGATGTTCAGTTTGG 58.042 37.500 6.97 0.00 0.00 3.28
41 42 7.878477 AAAGTTGCATATGATGTTCAGTTTG 57.122 32.000 6.97 0.00 0.00 2.93
42 43 9.630098 CTAAAAGTTGCATATGATGTTCAGTTT 57.370 29.630 6.97 0.00 0.00 2.66
43 44 8.796475 ACTAAAAGTTGCATATGATGTTCAGTT 58.204 29.630 6.97 0.00 0.00 3.16
44 45 8.340618 ACTAAAAGTTGCATATGATGTTCAGT 57.659 30.769 6.97 0.00 0.00 3.41
45 46 9.708222 GTACTAAAAGTTGCATATGATGTTCAG 57.292 33.333 6.97 0.00 0.00 3.02
46 47 8.673711 GGTACTAAAAGTTGCATATGATGTTCA 58.326 33.333 6.97 0.00 0.00 3.18
47 48 8.893727 AGGTACTAAAAGTTGCATATGATGTTC 58.106 33.333 6.97 0.00 36.02 3.18
48 49 8.807948 AGGTACTAAAAGTTGCATATGATGTT 57.192 30.769 6.97 0.00 36.02 2.71
49 50 8.267894 AGAGGTACTAAAAGTTGCATATGATGT 58.732 33.333 6.97 0.00 41.55 3.06
50 51 8.668510 AGAGGTACTAAAAGTTGCATATGATG 57.331 34.615 6.97 0.00 41.55 3.07
51 52 9.686683 AAAGAGGTACTAAAAGTTGCATATGAT 57.313 29.630 6.97 0.00 41.55 2.45
52 53 9.515226 AAAAGAGGTACTAAAAGTTGCATATGA 57.485 29.630 6.97 0.00 41.55 2.15
56 57 9.127277 TGTAAAAAGAGGTACTAAAAGTTGCAT 57.873 29.630 0.00 0.00 41.55 3.96
57 58 8.508883 TGTAAAAAGAGGTACTAAAAGTTGCA 57.491 30.769 0.00 0.00 41.55 4.08
58 59 9.229784 GTTGTAAAAAGAGGTACTAAAAGTTGC 57.770 33.333 0.00 0.00 41.55 4.17
96 97 4.326826 TGAAGTGTTCATGCCTTTAGGAG 58.673 43.478 0.00 0.00 33.79 3.69
241 242 7.650104 CCCATGTAAATTTGTTGTCTTTTACGT 59.350 33.333 0.00 0.00 37.36 3.57
253 254 5.029474 ACCTATTGCCCCATGTAAATTTGT 58.971 37.500 0.00 0.00 0.00 2.83
258 259 3.370104 CCAACCTATTGCCCCATGTAAA 58.630 45.455 0.00 0.00 34.17 2.01
269 270 0.381801 GGACATGCGCCAACCTATTG 59.618 55.000 4.18 0.00 35.40 1.90
271 272 0.255890 AAGGACATGCGCCAACCTAT 59.744 50.000 4.18 0.00 0.00 2.57
273 274 1.228552 AAAGGACATGCGCCAACCT 60.229 52.632 4.18 5.78 0.00 3.50
302 303 0.462225 TGAGTTTCGAACCGGCAACA 60.462 50.000 0.00 0.00 0.00 3.33
305 306 1.595929 GGTGAGTTTCGAACCGGCA 60.596 57.895 0.00 0.00 0.00 5.69
346 347 2.253758 CCTGTCAGTGCACAACCGG 61.254 63.158 21.04 17.44 0.00 5.28
348 349 1.447317 CCACCTGTCAGTGCACAACC 61.447 60.000 21.04 6.16 36.38 3.77
402 403 0.171455 GCAGTGTCGGGACAGACTAG 59.829 60.000 0.94 0.00 42.74 2.57
403 404 0.538746 TGCAGTGTCGGGACAGACTA 60.539 55.000 0.94 0.00 42.74 2.59
493 495 4.436242 TCGAACTGCTTCTACTTGGTAG 57.564 45.455 0.00 0.00 37.47 3.18
495 497 3.006967 ACATCGAACTGCTTCTACTTGGT 59.993 43.478 0.00 0.00 0.00 3.67
496 498 3.589988 ACATCGAACTGCTTCTACTTGG 58.410 45.455 0.00 0.00 0.00 3.61
497 499 6.893958 AATACATCGAACTGCTTCTACTTG 57.106 37.500 0.00 0.00 0.00 3.16
499 501 7.602644 TGAAAAATACATCGAACTGCTTCTACT 59.397 33.333 0.00 0.00 0.00 2.57
500 502 7.739295 TGAAAAATACATCGAACTGCTTCTAC 58.261 34.615 0.00 0.00 0.00 2.59
506 522 6.855914 TGAACTTGAAAAATACATCGAACTGC 59.144 34.615 0.00 0.00 0.00 4.40
530 546 3.200483 TCGATGTTCATTCTGATGCCTG 58.800 45.455 0.00 0.00 33.14 4.85
539 555 7.568134 GCATAAATTTGCCATCGATGTTCATTC 60.568 37.037 23.27 6.40 36.60 2.67
541 557 5.693104 GCATAAATTTGCCATCGATGTTCAT 59.307 36.000 23.27 7.58 36.60 2.57
610 626 4.469657 TGATTGTTAGAACCAGGCAAACT 58.530 39.130 0.00 0.00 0.00 2.66
612 628 4.280677 CCTTGATTGTTAGAACCAGGCAAA 59.719 41.667 0.00 0.00 0.00 3.68
761 960 2.991076 GCAGCTGGCTCTGGCTTTG 61.991 63.158 17.12 0.00 40.25 2.77
792 991 7.401955 AATGGAATCTCCTTTTCAGATGAAC 57.598 36.000 0.00 0.00 37.46 3.18
801 1000 6.350780 GCATCAGACAAATGGAATCTCCTTTT 60.351 38.462 1.73 1.73 42.47 2.27
815 1014 2.965147 GCACGCGGCATCAGACAAA 61.965 57.895 12.47 0.00 43.97 2.83
861 1060 6.020599 GGTATTAGTGATATGATAGCGTTGCG 60.021 42.308 0.00 0.00 0.00 4.85
877 1076 6.602179 CATGTGTGTTCACTTGGTATTAGTG 58.398 40.000 4.59 0.00 44.14 2.74
936 1135 0.446222 GTACGGTTGATGCAATGCGT 59.554 50.000 0.00 0.00 0.00 5.24
975 1181 0.469917 TGCCTTCGAGAATGGGATCC 59.530 55.000 1.92 1.92 0.00 3.36
1101 1308 1.677052 GAGTACTCCTTCTCGCCGAAT 59.323 52.381 12.13 0.00 0.00 3.34
1409 1625 4.527583 CGAGGAGAGGCAGGCTGC 62.528 72.222 30.93 30.93 44.08 5.25
1675 1927 3.747976 GTGGAACATGGGCACGGC 61.748 66.667 0.00 0.00 44.52 5.68
1770 2022 1.807573 CTGCTCGAAGACGGCCTTC 60.808 63.158 0.00 0.00 46.05 3.46
1788 2040 2.845752 TAACCCTGTGCCGCACGATC 62.846 60.000 18.41 0.00 37.14 3.69
1806 2058 2.202960 GCGCCGCCCATGTTAGTA 60.203 61.111 0.00 0.00 0.00 1.82
1929 2187 0.106819 GCTCATCCATCTTGGCCAGT 60.107 55.000 5.11 0.00 37.47 4.00
1944 2202 1.006571 GACGTTGAACCCGAGCTCA 60.007 57.895 15.40 0.00 0.00 4.26
2163 2424 1.078848 GTTCCCTCGCAGCATGACT 60.079 57.895 0.00 0.00 39.69 3.41
2172 2433 2.100631 CATCACCGTGTTCCCTCGC 61.101 63.158 0.00 0.00 0.00 5.03
2175 2436 1.296715 GCTCATCACCGTGTTCCCT 59.703 57.895 0.00 0.00 0.00 4.20
2603 2870 1.309013 AGGATTCCCATGGCCCTGA 60.309 57.895 9.96 0.00 33.88 3.86
2618 2885 0.835971 TGTGGTCAGCTTAGGCAGGA 60.836 55.000 0.00 0.00 41.70 3.86
2633 2906 3.648339 AATGCTACAGTTTGCTTGTGG 57.352 42.857 0.00 0.00 0.00 4.17
2793 4486 2.064581 GGATCAGTGTACGGGGCCT 61.065 63.158 0.84 0.00 0.00 5.19
2864 4560 0.459585 AGTATGCCCGCTTGTACACG 60.460 55.000 0.00 0.00 0.00 4.49
2947 4647 4.270008 CCGATTTCCTCCCACTGTATTTT 58.730 43.478 0.00 0.00 0.00 1.82
2971 4671 0.110509 GAACACACAGACGCATGCTG 60.111 55.000 17.13 10.08 39.26 4.41
3020 4720 6.528423 CGTGATTCTTTAGAGTCGAGTCAAAT 59.472 38.462 21.89 12.22 34.02 2.32
3036 4736 1.358152 TTCCCCAGACCGTGATTCTT 58.642 50.000 0.00 0.00 0.00 2.52
3048 4748 0.965439 TTGCGGTTTTGATTCCCCAG 59.035 50.000 0.00 0.00 0.00 4.45
3049 4749 1.414158 TTTGCGGTTTTGATTCCCCA 58.586 45.000 0.00 0.00 0.00 4.96
3050 4750 2.036604 TCTTTTGCGGTTTTGATTCCCC 59.963 45.455 0.00 0.00 0.00 4.81
3051 4751 3.378911 TCTTTTGCGGTTTTGATTCCC 57.621 42.857 0.00 0.00 0.00 3.97
3052 4752 4.368315 ACTTCTTTTGCGGTTTTGATTCC 58.632 39.130 0.00 0.00 0.00 3.01
3065 4779 6.267817 TCTTGCACAGAAATGACTTCTTTTG 58.732 36.000 0.00 0.00 41.97 2.44
3067 4781 6.455360 TTCTTGCACAGAAATGACTTCTTT 57.545 33.333 8.34 0.00 41.97 2.52
3079 4793 2.233676 TCTAGCCGATTTCTTGCACAGA 59.766 45.455 0.00 0.00 0.00 3.41
3080 4794 2.621338 TCTAGCCGATTTCTTGCACAG 58.379 47.619 0.00 0.00 0.00 3.66
3083 4797 3.872696 TGATTCTAGCCGATTTCTTGCA 58.127 40.909 0.00 0.00 0.00 4.08
3085 4799 6.609237 TGAATGATTCTAGCCGATTTCTTG 57.391 37.500 6.73 0.00 0.00 3.02
3086 4800 7.050377 TCTTGAATGATTCTAGCCGATTTCTT 58.950 34.615 11.02 0.00 33.43 2.52
3087 4801 6.586344 TCTTGAATGATTCTAGCCGATTTCT 58.414 36.000 11.02 0.00 33.43 2.52
3088 4802 6.851222 TCTTGAATGATTCTAGCCGATTTC 57.149 37.500 11.02 0.00 33.43 2.17
3089 4803 7.814264 ATTCTTGAATGATTCTAGCCGATTT 57.186 32.000 11.02 0.00 33.43 2.17
3090 4804 7.118971 GCTATTCTTGAATGATTCTAGCCGATT 59.881 37.037 11.02 0.00 33.43 3.34
3091 4805 6.593382 GCTATTCTTGAATGATTCTAGCCGAT 59.407 38.462 11.02 7.94 33.43 4.18
3092 4806 5.928839 GCTATTCTTGAATGATTCTAGCCGA 59.071 40.000 11.02 1.96 33.43 5.54
3093 4807 5.698089 TGCTATTCTTGAATGATTCTAGCCG 59.302 40.000 16.06 5.83 33.43 5.52
3096 4810 7.226128 TGCACTGCTATTCTTGAATGATTCTAG 59.774 37.037 9.83 9.83 34.47 2.43
3114 6473 5.359756 TCGATGATACTAAAATGCACTGCT 58.640 37.500 1.98 0.00 0.00 4.24
3115 6474 5.657470 TCGATGATACTAAAATGCACTGC 57.343 39.130 0.00 0.00 0.00 4.40
3136 6495 9.185192 CTTGAGATTTAAGAAACACCAACATTC 57.815 33.333 0.00 0.00 0.00 2.67
3138 6497 8.463930 TCTTGAGATTTAAGAAACACCAACAT 57.536 30.769 0.00 0.00 31.62 2.71
3150 6509 7.335422 AGCCGGCATATTATCTTGAGATTTAAG 59.665 37.037 31.54 0.00 36.05 1.85
3151 6510 7.168219 AGCCGGCATATTATCTTGAGATTTAA 58.832 34.615 31.54 0.00 36.05 1.52
3152 6511 6.711277 AGCCGGCATATTATCTTGAGATTTA 58.289 36.000 31.54 0.00 36.05 1.40
3156 6515 3.578282 TGAGCCGGCATATTATCTTGAGA 59.422 43.478 31.54 0.00 0.00 3.27
3157 6516 3.930336 TGAGCCGGCATATTATCTTGAG 58.070 45.455 31.54 0.00 0.00 3.02
3158 6517 4.350368 TTGAGCCGGCATATTATCTTGA 57.650 40.909 31.54 3.91 0.00 3.02
3159 6518 5.633830 AATTGAGCCGGCATATTATCTTG 57.366 39.130 31.54 0.00 0.00 3.02
3160 6519 6.655078 AAAATTGAGCCGGCATATTATCTT 57.345 33.333 31.54 12.45 0.00 2.40
3161 6520 6.568462 CGAAAAATTGAGCCGGCATATTATCT 60.568 38.462 31.54 4.27 0.00 1.98
3162 6521 5.569059 CGAAAAATTGAGCCGGCATATTATC 59.431 40.000 31.54 16.99 0.00 1.75
3163 6522 5.460646 CGAAAAATTGAGCCGGCATATTAT 58.539 37.500 31.54 15.72 0.00 1.28
3164 6523 4.261405 CCGAAAAATTGAGCCGGCATATTA 60.261 41.667 31.54 9.33 33.47 0.98
3166 6525 2.034558 CCGAAAAATTGAGCCGGCATAT 59.965 45.455 31.54 15.68 33.47 1.78
3167 6526 1.403679 CCGAAAAATTGAGCCGGCATA 59.596 47.619 31.54 14.63 33.47 3.14
3168 6527 0.173255 CCGAAAAATTGAGCCGGCAT 59.827 50.000 31.54 14.28 33.47 4.40
3169 6528 0.891449 TCCGAAAAATTGAGCCGGCA 60.891 50.000 31.54 8.70 39.96 5.69
3170 6529 0.179163 CTCCGAAAAATTGAGCCGGC 60.179 55.000 21.89 21.89 39.96 6.13
3171 6530 0.451783 CCTCCGAAAAATTGAGCCGG 59.548 55.000 0.00 0.00 41.36 6.13
3172 6531 1.135689 CACCTCCGAAAAATTGAGCCG 60.136 52.381 0.00 0.00 0.00 5.52
3173 6532 1.402852 GCACCTCCGAAAAATTGAGCC 60.403 52.381 0.00 0.00 0.00 4.70
3174 6533 1.541588 AGCACCTCCGAAAAATTGAGC 59.458 47.619 0.00 0.00 0.00 4.26
3175 6534 2.813754 TGAGCACCTCCGAAAAATTGAG 59.186 45.455 0.00 0.00 0.00 3.02
3176 6535 2.857483 TGAGCACCTCCGAAAAATTGA 58.143 42.857 0.00 0.00 0.00 2.57
3177 6536 3.855689 ATGAGCACCTCCGAAAAATTG 57.144 42.857 0.00 0.00 0.00 2.32
3178 6537 4.399303 CCTTATGAGCACCTCCGAAAAATT 59.601 41.667 0.00 0.00 0.00 1.82
3179 6538 3.947834 CCTTATGAGCACCTCCGAAAAAT 59.052 43.478 0.00 0.00 0.00 1.82
3180 6539 3.008594 TCCTTATGAGCACCTCCGAAAAA 59.991 43.478 0.00 0.00 0.00 1.94
3182 6541 2.184533 TCCTTATGAGCACCTCCGAAA 58.815 47.619 0.00 0.00 0.00 3.46
3184 6543 2.088104 ATCCTTATGAGCACCTCCGA 57.912 50.000 0.00 0.00 0.00 4.55
3185 6544 3.511540 TCATATCCTTATGAGCACCTCCG 59.488 47.826 0.00 0.00 39.40 4.63
3187 6546 5.873712 CACATCATATCCTTATGAGCACCTC 59.126 44.000 2.54 0.00 45.59 3.85
3188 6547 5.802465 CACATCATATCCTTATGAGCACCT 58.198 41.667 2.54 0.00 45.59 4.00
3189 6548 4.394300 GCACATCATATCCTTATGAGCACC 59.606 45.833 0.00 0.00 45.59 5.01
3190 6549 4.092529 CGCACATCATATCCTTATGAGCAC 59.907 45.833 0.00 0.00 45.59 4.40
3191 6550 4.248058 CGCACATCATATCCTTATGAGCA 58.752 43.478 0.00 0.00 45.59 4.26
3192 6551 4.092529 CACGCACATCATATCCTTATGAGC 59.907 45.833 2.54 0.00 45.59 4.26
3193 6552 5.119743 CACACGCACATCATATCCTTATGAG 59.880 44.000 2.54 0.00 45.59 2.90
3195 6554 4.751600 ACACACGCACATCATATCCTTATG 59.248 41.667 0.00 0.00 37.19 1.90
3196 6555 4.960938 ACACACGCACATCATATCCTTAT 58.039 39.130 0.00 0.00 0.00 1.73
3197 6556 4.400529 ACACACGCACATCATATCCTTA 57.599 40.909 0.00 0.00 0.00 2.69
3198 6557 3.266510 ACACACGCACATCATATCCTT 57.733 42.857 0.00 0.00 0.00 3.36
3199 6558 2.988010 ACACACGCACATCATATCCT 57.012 45.000 0.00 0.00 0.00 3.24
3200 6559 2.471370 CGTACACACGCACATCATATCC 59.529 50.000 0.00 0.00 42.05 2.59
3201 6560 3.753305 CGTACACACGCACATCATATC 57.247 47.619 0.00 0.00 42.05 1.63
3210 6569 6.973372 CATCCCTATGAACGTACACACGCA 62.973 50.000 0.00 0.00 42.81 5.24
3211 6570 4.578504 CATCCCTATGAACGTACACACGC 61.579 52.174 0.00 0.00 42.81 5.34
3212 6571 3.113322 CATCCCTATGAACGTACACACG 58.887 50.000 0.00 0.00 43.81 4.49
3213 6572 4.142227 ACTCATCCCTATGAACGTACACAC 60.142 45.833 0.00 0.00 41.57 3.82
3215 6574 4.142227 ACACTCATCCCTATGAACGTACAC 60.142 45.833 0.00 0.00 41.57 2.90
3216 6575 4.021229 ACACTCATCCCTATGAACGTACA 58.979 43.478 0.00 0.00 41.57 2.90
3217 6576 4.650754 ACACTCATCCCTATGAACGTAC 57.349 45.455 0.00 0.00 41.57 3.67
3218 6577 6.148315 CGTATACACTCATCCCTATGAACGTA 59.852 42.308 3.32 0.00 41.57 3.57
3219 6578 5.048921 CGTATACACTCATCCCTATGAACGT 60.049 44.000 3.32 0.00 41.57 3.99
3220 6579 5.391449 CGTATACACTCATCCCTATGAACG 58.609 45.833 3.32 0.00 41.57 3.95
3222 6581 4.082949 CGCGTATACACTCATCCCTATGAA 60.083 45.833 0.00 0.00 41.57 2.57
3223 6582 3.439129 CGCGTATACACTCATCCCTATGA 59.561 47.826 0.00 0.00 39.87 2.15
3225 6584 3.190744 CACGCGTATACACTCATCCCTAT 59.809 47.826 13.44 0.00 0.00 2.57
3227 6586 1.337071 CACGCGTATACACTCATCCCT 59.663 52.381 13.44 0.00 0.00 4.20
3228 6587 1.066605 ACACGCGTATACACTCATCCC 59.933 52.381 13.44 0.00 0.00 3.85
3229 6588 2.486951 ACACGCGTATACACTCATCC 57.513 50.000 13.44 0.00 0.00 3.51
3230 6589 6.540205 TCATATACACGCGTATACACTCATC 58.460 40.000 13.44 0.00 42.10 2.92
3232 6591 5.616204 GCTCATATACACGCGTATACACTCA 60.616 44.000 13.44 0.00 42.10 3.41
3234 6593 4.668431 CGCTCATATACACGCGTATACACT 60.668 45.833 13.44 0.00 42.10 3.55
3235 6594 3.537225 CGCTCATATACACGCGTATACAC 59.463 47.826 13.44 0.00 42.10 2.90
3237 6596 2.525096 GCGCTCATATACACGCGTATAC 59.475 50.000 13.44 0.00 46.56 1.47
3238 6597 2.777494 GCGCTCATATACACGCGTATA 58.223 47.619 13.44 5.15 46.56 1.47
3239 6598 1.614385 GCGCTCATATACACGCGTAT 58.386 50.000 13.44 1.77 46.56 3.06
3240 6599 3.081741 GCGCTCATATACACGCGTA 57.918 52.632 13.44 0.00 46.56 4.42
3244 6603 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
3245 6604 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
3246 6605 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
3247 6606 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
3248 6607 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
3249 6608 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
3250 6609 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
3251 6610 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
3252 6611 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
3253 6612 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
3255 6614 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
3257 6616 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
3258 6617 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
3281 6640 7.093992 TCGTCAGAAACACCAAAATTCTTTTT 58.906 30.769 0.00 0.00 35.41 1.94
3283 6642 6.202516 TCGTCAGAAACACCAAAATTCTTT 57.797 33.333 0.00 0.00 31.26 2.52
3284 6643 5.828299 TCGTCAGAAACACCAAAATTCTT 57.172 34.783 0.00 0.00 31.26 2.52
3285 6644 6.263168 AGAATCGTCAGAAACACCAAAATTCT 59.737 34.615 0.00 0.00 33.83 2.40
3286 6645 6.438763 AGAATCGTCAGAAACACCAAAATTC 58.561 36.000 0.00 0.00 0.00 2.17
3287 6646 6.039270 TGAGAATCGTCAGAAACACCAAAATT 59.961 34.615 0.00 0.00 38.61 1.82
3290 6649 4.272504 GTGAGAATCGTCAGAAACACCAAA 59.727 41.667 0.00 0.00 38.61 3.28
3347 7887 6.617371 AGATAGGATGTCCAATAGAGGTTGTT 59.383 38.462 1.30 0.00 38.89 2.83
3350 7890 6.434652 CGTAGATAGGATGTCCAATAGAGGTT 59.565 42.308 1.30 0.00 38.89 3.50
3371 7911 2.782192 CCGAGTAACATTTCGCTCGTAG 59.218 50.000 11.05 0.00 46.30 3.51
3377 7917 1.022451 TGGCCCGAGTAACATTTCGC 61.022 55.000 0.00 0.00 35.58 4.70
3385 7925 2.577059 CTCGCTTGGCCCGAGTAA 59.423 61.111 18.50 0.00 45.17 2.24
3425 7965 1.347817 GAACGTGAGCCTTCTCGCTG 61.348 60.000 0.00 1.72 45.28 5.18
3449 7989 2.567497 GGGGACGAACGAGTGTGGA 61.567 63.158 0.14 0.00 0.00 4.02
3519 8059 1.267574 GGTCTGATGCCTCTGGGTCA 61.268 60.000 0.00 0.00 34.45 4.02
3562 8102 2.717044 CGGATAGGACGGTGTGGCA 61.717 63.158 0.00 0.00 0.00 4.92
3598 8138 3.510388 TTCTGTCTAGATTCGCCACTG 57.490 47.619 0.00 0.00 31.81 3.66
3599 8139 3.511934 AGTTTCTGTCTAGATTCGCCACT 59.488 43.478 0.00 0.00 31.81 4.00
3600 8140 3.614616 CAGTTTCTGTCTAGATTCGCCAC 59.385 47.826 0.00 0.00 31.81 5.01
3601 8141 3.368427 CCAGTTTCTGTCTAGATTCGCCA 60.368 47.826 0.00 0.00 31.81 5.69
3602 8142 3.119101 TCCAGTTTCTGTCTAGATTCGCC 60.119 47.826 0.00 0.00 31.81 5.54
3603 8143 4.109050 CTCCAGTTTCTGTCTAGATTCGC 58.891 47.826 0.00 0.00 31.81 4.70
3604 8144 4.440802 CCCTCCAGTTTCTGTCTAGATTCG 60.441 50.000 0.00 0.00 31.81 3.34
3605 8145 4.468153 ACCCTCCAGTTTCTGTCTAGATTC 59.532 45.833 0.00 0.00 31.81 2.52
3606 8146 4.223923 CACCCTCCAGTTTCTGTCTAGATT 59.776 45.833 0.00 0.00 31.81 2.40
3607 8147 3.772025 CACCCTCCAGTTTCTGTCTAGAT 59.228 47.826 0.00 0.00 31.81 1.98
3608 8148 3.165875 CACCCTCCAGTTTCTGTCTAGA 58.834 50.000 0.00 0.00 0.00 2.43
3609 8149 2.234908 CCACCCTCCAGTTTCTGTCTAG 59.765 54.545 0.00 0.00 0.00 2.43
3610 8150 2.257207 CCACCCTCCAGTTTCTGTCTA 58.743 52.381 0.00 0.00 0.00 2.59
3611 8151 1.059913 CCACCCTCCAGTTTCTGTCT 58.940 55.000 0.00 0.00 0.00 3.41
3612 8152 0.036875 CCCACCCTCCAGTTTCTGTC 59.963 60.000 0.00 0.00 0.00 3.51
3613 8153 2.069165 GCCCACCCTCCAGTTTCTGT 62.069 60.000 0.00 0.00 0.00 3.41
3614 8154 1.303643 GCCCACCCTCCAGTTTCTG 60.304 63.158 0.00 0.00 0.00 3.02
3615 8155 1.464198 AGCCCACCCTCCAGTTTCT 60.464 57.895 0.00 0.00 0.00 2.52
3616 8156 1.002011 GAGCCCACCCTCCAGTTTC 60.002 63.158 0.00 0.00 0.00 2.78
3617 8157 1.360393 TTGAGCCCACCCTCCAGTTT 61.360 55.000 0.00 0.00 0.00 2.66
3618 8158 1.360393 TTTGAGCCCACCCTCCAGTT 61.360 55.000 0.00 0.00 0.00 3.16
3619 8159 1.774217 TTTGAGCCCACCCTCCAGT 60.774 57.895 0.00 0.00 0.00 4.00
3620 8160 1.001641 CTTTGAGCCCACCCTCCAG 60.002 63.158 0.00 0.00 0.00 3.86
3621 8161 3.170362 CTTTGAGCCCACCCTCCA 58.830 61.111 0.00 0.00 0.00 3.86
3622 8162 2.361737 GCTTTGAGCCCACCCTCC 60.362 66.667 0.00 0.00 34.48 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.