Multiple sequence alignment - TraesCS5A01G499700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G499700 chr5A 100.000 3011 0 0 1 3011 666203110 666206120 0.000000e+00 5561.0
1 TraesCS5A01G499700 chr5A 91.837 49 4 0 2160 2208 666205225 666205273 5.390000e-08 69.4
2 TraesCS5A01G499700 chr5A 91.837 49 4 0 2116 2164 666205269 666205317 5.390000e-08 69.4
3 TraesCS5A01G499700 chr4D 92.931 1457 67 12 738 2164 485163283 485164733 0.000000e+00 2087.0
4 TraesCS5A01G499700 chr4D 88.719 523 15 19 44 564 485162754 485163234 1.540000e-167 599.0
5 TraesCS5A01G499700 chr4D 89.535 86 7 2 2160 2244 485164685 485164769 1.140000e-19 108.0
6 TraesCS5A01G499700 chr4B 92.209 1476 83 13 688 2161 618346966 618348411 0.000000e+00 2060.0
7 TraesCS5A01G499700 chr4B 88.515 357 18 8 215 571 618346635 618346968 7.770000e-111 411.0
8 TraesCS5A01G499700 chr4B 89.231 195 11 6 1 189 618346457 618346647 5.020000e-58 235.0
9 TraesCS5A01G499700 chr6B 98.942 756 8 0 2256 3011 507473179 507473934 0.000000e+00 1352.0
10 TraesCS5A01G499700 chr6B 98.309 769 12 1 2244 3011 339386358 339385590 0.000000e+00 1347.0
11 TraesCS5A01G499700 chr6B 98.551 759 10 1 2253 3011 511703444 511704201 0.000000e+00 1339.0
12 TraesCS5A01G499700 chr3B 98.560 764 11 0 2248 3011 695918361 695917598 0.000000e+00 1351.0
13 TraesCS5A01G499700 chr7A 98.681 758 10 0 2254 3011 265437943 265438700 0.000000e+00 1345.0
14 TraesCS5A01G499700 chr7A 100.000 29 0 0 610 638 35765147 35765119 2.000000e-03 54.7
15 TraesCS5A01G499700 chr2A 98.808 755 9 0 2257 3011 642927797 642928551 0.000000e+00 1345.0
16 TraesCS5A01G499700 chr2A 74.247 299 47 21 1232 1524 661585614 661585340 6.870000e-17 99.0
17 TraesCS5A01G499700 chr6A 98.301 765 13 0 2247 3011 485311317 485310553 0.000000e+00 1341.0
18 TraesCS5A01G499700 chr6A 100.000 29 0 0 610 638 91891231 91891203 2.000000e-03 54.7
19 TraesCS5A01G499700 chr1B 98.553 760 10 1 2253 3011 357015879 357015120 0.000000e+00 1341.0
20 TraesCS5A01G499700 chr1B 85.526 152 22 0 1847 1998 394116972 394117123 3.110000e-35 159.0
21 TraesCS5A01G499700 chr1A 98.551 759 10 1 2253 3011 517048473 517047716 0.000000e+00 1339.0
22 TraesCS5A01G499700 chr1D 85.897 156 22 0 1847 2002 293291862 293292017 1.860000e-37 167.0
23 TraesCS5A01G499700 chr2B 74.916 299 45 21 1232 1524 609202090 609201816 3.170000e-20 110.0
24 TraesCS5A01G499700 chr2B 95.455 44 2 0 635 678 579690467 579690424 1.500000e-08 71.3
25 TraesCS5A01G499700 chr2B 100.000 28 0 0 611 638 786169370 786169343 5.000000e-03 52.8
26 TraesCS5A01G499700 chr2D 74.257 303 48 21 1232 1528 517264487 517264209 1.910000e-17 100.0
27 TraesCS5A01G499700 chr2D 100.000 29 0 0 610 638 116214144 116214116 2.000000e-03 54.7
28 TraesCS5A01G499700 chr2D 100.000 28 0 0 611 638 562661656 562661683 5.000000e-03 52.8
29 TraesCS5A01G499700 chrUn 100.000 28 0 0 611 638 38364700 38364673 5.000000e-03 52.8
30 TraesCS5A01G499700 chr7D 100.000 28 0 0 611 638 296866976 296867003 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G499700 chr5A 666203110 666206120 3010 False 1899.933333 5561 94.558 1 3011 3 chr5A.!!$F1 3010
1 TraesCS5A01G499700 chr4D 485162754 485164769 2015 False 931.333333 2087 90.395 44 2244 3 chr4D.!!$F1 2200
2 TraesCS5A01G499700 chr4B 618346457 618348411 1954 False 902.000000 2060 89.985 1 2161 3 chr4B.!!$F1 2160
3 TraesCS5A01G499700 chr6B 507473179 507473934 755 False 1352.000000 1352 98.942 2256 3011 1 chr6B.!!$F1 755
4 TraesCS5A01G499700 chr6B 339385590 339386358 768 True 1347.000000 1347 98.309 2244 3011 1 chr6B.!!$R1 767
5 TraesCS5A01G499700 chr6B 511703444 511704201 757 False 1339.000000 1339 98.551 2253 3011 1 chr6B.!!$F2 758
6 TraesCS5A01G499700 chr3B 695917598 695918361 763 True 1351.000000 1351 98.560 2248 3011 1 chr3B.!!$R1 763
7 TraesCS5A01G499700 chr7A 265437943 265438700 757 False 1345.000000 1345 98.681 2254 3011 1 chr7A.!!$F1 757
8 TraesCS5A01G499700 chr2A 642927797 642928551 754 False 1345.000000 1345 98.808 2257 3011 1 chr2A.!!$F1 754
9 TraesCS5A01G499700 chr6A 485310553 485311317 764 True 1341.000000 1341 98.301 2247 3011 1 chr6A.!!$R2 764
10 TraesCS5A01G499700 chr1B 357015120 357015879 759 True 1341.000000 1341 98.553 2253 3011 1 chr1B.!!$R1 758
11 TraesCS5A01G499700 chr1A 517047716 517048473 757 True 1339.000000 1339 98.551 2253 3011 1 chr1A.!!$R1 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
636 651 0.035152 TGGATCACTGACATGTGGGC 60.035 55.0 1.15 0.0 38.4 5.36 F
637 652 0.749454 GGATCACTGACATGTGGGCC 60.749 60.0 1.15 0.0 38.4 5.80 F
1877 1914 0.392729 GACGAGGAGGAGGACGAGAA 60.393 60.0 0.00 0.0 0.0 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 1576 0.832135 AGCAAGAACGGTGGGAGAGA 60.832 55.000 0.00 0.0 0.00 3.10 R
1980 2017 1.285950 CGTGAGGACGTTGAGCAGA 59.714 57.895 0.00 0.0 40.91 4.26 R
2686 2730 0.928922 CTGCTGCATCAACTAGCTCG 59.071 55.000 1.31 0.0 38.25 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
192 199 0.253327 GCCACTCCTACTCTTTGGGG 59.747 60.000 0.00 0.00 0.00 4.96
198 205 4.519350 CACTCCTACTCTTTGGGGTTTTTC 59.481 45.833 0.00 0.00 34.26 2.29
223 235 5.773239 TTTTTGTGCGCATACTACTACTC 57.227 39.130 15.91 0.00 0.00 2.59
224 236 4.713824 TTTGTGCGCATACTACTACTCT 57.286 40.909 15.91 0.00 0.00 3.24
225 237 4.713824 TTGTGCGCATACTACTACTCTT 57.286 40.909 15.91 0.00 0.00 2.85
226 238 4.713824 TGTGCGCATACTACTACTCTTT 57.286 40.909 15.91 0.00 0.00 2.52
227 239 5.068234 TGTGCGCATACTACTACTCTTTT 57.932 39.130 15.91 0.00 0.00 2.27
228 240 5.475719 TGTGCGCATACTACTACTCTTTTT 58.524 37.500 15.91 0.00 0.00 1.94
323 335 2.516888 CCACGGTGGAGGGTCAAGT 61.517 63.158 22.77 0.00 40.96 3.16
334 346 0.951040 GGGTCAAGTTCGTCCTGCTG 60.951 60.000 0.00 0.00 0.00 4.41
335 347 1.569479 GGTCAAGTTCGTCCTGCTGC 61.569 60.000 0.00 0.00 0.00 5.25
336 348 1.301716 TCAAGTTCGTCCTGCTGCC 60.302 57.895 0.00 0.00 0.00 4.85
337 349 2.357517 AAGTTCGTCCTGCTGCCG 60.358 61.111 0.00 0.00 0.00 5.69
338 350 3.883744 AAGTTCGTCCTGCTGCCGG 62.884 63.158 3.41 3.41 0.00 6.13
377 389 1.006086 CAACTGCGTGGCGATCATTA 58.994 50.000 0.00 0.00 0.00 1.90
380 392 0.855349 CTGCGTGGCGATCATTACTC 59.145 55.000 0.00 0.00 0.00 2.59
381 393 0.459899 TGCGTGGCGATCATTACTCT 59.540 50.000 0.00 0.00 0.00 3.24
382 394 1.679153 TGCGTGGCGATCATTACTCTA 59.321 47.619 0.00 0.00 0.00 2.43
383 395 2.287608 TGCGTGGCGATCATTACTCTAG 60.288 50.000 0.00 0.00 0.00 2.43
415 430 1.467734 GTCCAACTTGATCTGCTGCTG 59.532 52.381 0.00 0.00 0.00 4.41
416 431 0.170561 CCAACTTGATCTGCTGCTGC 59.829 55.000 8.89 8.89 40.20 5.25
417 432 1.166129 CAACTTGATCTGCTGCTGCT 58.834 50.000 17.00 0.00 40.48 4.24
418 433 2.353323 CAACTTGATCTGCTGCTGCTA 58.647 47.619 17.00 5.45 40.48 3.49
419 434 2.021355 ACTTGATCTGCTGCTGCTAC 57.979 50.000 17.00 6.12 40.48 3.58
420 435 1.554160 ACTTGATCTGCTGCTGCTACT 59.446 47.619 17.00 0.77 40.48 2.57
427 442 3.357203 TCTGCTGCTGCTACTACTACTT 58.643 45.455 17.00 0.00 40.48 2.24
497 512 1.662517 CCAACCAACCAACAAAAGGC 58.337 50.000 0.00 0.00 0.00 4.35
499 514 2.616510 CCAACCAACCAACAAAAGGCAA 60.617 45.455 0.00 0.00 0.00 4.52
528 543 1.205657 ACAAAGTGCTCGTGTACGTG 58.794 50.000 0.00 3.27 40.80 4.49
594 609 3.267860 CCTCGCCGATGCAGCTTC 61.268 66.667 0.00 0.00 37.32 3.86
595 610 3.624300 CTCGCCGATGCAGCTTCG 61.624 66.667 20.91 20.91 37.32 3.79
605 620 4.389576 CAGCTTCGGTTGCGGCAC 62.390 66.667 0.05 0.00 35.28 5.01
606 621 4.927782 AGCTTCGGTTGCGGCACA 62.928 61.111 0.05 0.00 35.28 4.57
607 622 3.737172 GCTTCGGTTGCGGCACAT 61.737 61.111 0.05 0.00 0.00 3.21
608 623 2.176546 CTTCGGTTGCGGCACATG 59.823 61.111 0.05 0.00 0.00 3.21
609 624 3.951655 CTTCGGTTGCGGCACATGC 62.952 63.158 0.05 0.00 41.14 4.06
619 634 2.263540 GCACATGCCTGCCTTTGG 59.736 61.111 0.00 0.00 34.31 3.28
620 635 2.277591 GCACATGCCTGCCTTTGGA 61.278 57.895 0.00 0.00 34.31 3.53
621 636 1.610554 GCACATGCCTGCCTTTGGAT 61.611 55.000 0.00 0.00 34.31 3.41
622 637 0.458669 CACATGCCTGCCTTTGGATC 59.541 55.000 0.00 0.00 0.00 3.36
623 638 0.040058 ACATGCCTGCCTTTGGATCA 59.960 50.000 0.00 0.00 0.00 2.92
624 639 0.458669 CATGCCTGCCTTTGGATCAC 59.541 55.000 0.00 0.00 0.00 3.06
625 640 0.333993 ATGCCTGCCTTTGGATCACT 59.666 50.000 0.00 0.00 0.00 3.41
626 641 0.609957 TGCCTGCCTTTGGATCACTG 60.610 55.000 0.00 0.00 0.00 3.66
627 642 0.322816 GCCTGCCTTTGGATCACTGA 60.323 55.000 0.00 0.00 0.00 3.41
628 643 1.457346 CCTGCCTTTGGATCACTGAC 58.543 55.000 0.00 0.00 0.00 3.51
629 644 1.271543 CCTGCCTTTGGATCACTGACA 60.272 52.381 0.00 0.00 0.00 3.58
630 645 2.619849 CCTGCCTTTGGATCACTGACAT 60.620 50.000 0.00 0.00 0.00 3.06
631 646 2.422479 CTGCCTTTGGATCACTGACATG 59.578 50.000 0.00 0.00 0.00 3.21
632 647 2.224843 TGCCTTTGGATCACTGACATGT 60.225 45.455 0.00 0.00 0.00 3.21
633 648 2.163010 GCCTTTGGATCACTGACATGTG 59.837 50.000 1.15 0.00 39.15 3.21
634 649 2.751259 CCTTTGGATCACTGACATGTGG 59.249 50.000 1.15 0.00 38.40 4.17
635 650 2.495155 TTGGATCACTGACATGTGGG 57.505 50.000 1.15 0.00 38.40 4.61
636 651 0.035152 TGGATCACTGACATGTGGGC 60.035 55.000 1.15 0.00 38.40 5.36
637 652 0.749454 GGATCACTGACATGTGGGCC 60.749 60.000 1.15 0.00 38.40 5.80
638 653 0.749454 GATCACTGACATGTGGGCCC 60.749 60.000 17.59 17.59 38.40 5.80
639 654 1.499913 ATCACTGACATGTGGGCCCA 61.500 55.000 24.45 24.45 38.40 5.36
640 655 1.973281 CACTGACATGTGGGCCCAC 60.973 63.158 42.81 42.81 46.33 4.61
654 669 1.473258 GCCCACATGCCAGTAATTCA 58.527 50.000 0.00 0.00 0.00 2.57
655 670 1.824230 GCCCACATGCCAGTAATTCAA 59.176 47.619 0.00 0.00 0.00 2.69
656 671 2.233431 GCCCACATGCCAGTAATTCAAA 59.767 45.455 0.00 0.00 0.00 2.69
657 672 3.676873 GCCCACATGCCAGTAATTCAAAG 60.677 47.826 0.00 0.00 0.00 2.77
658 673 3.119029 CCCACATGCCAGTAATTCAAAGG 60.119 47.826 0.00 0.00 0.00 3.11
659 674 3.514645 CACATGCCAGTAATTCAAAGGC 58.485 45.455 0.00 0.00 45.41 4.35
663 678 3.874392 GCCAGTAATTCAAAGGCATGT 57.126 42.857 0.00 0.00 44.59 3.21
664 679 3.514645 GCCAGTAATTCAAAGGCATGTG 58.485 45.455 0.00 0.00 44.59 3.21
665 680 3.514645 CCAGTAATTCAAAGGCATGTGC 58.485 45.455 0.00 0.00 41.14 4.57
666 681 3.194116 CCAGTAATTCAAAGGCATGTGCT 59.806 43.478 4.84 0.00 41.70 4.40
667 682 4.322198 CCAGTAATTCAAAGGCATGTGCTT 60.322 41.667 4.84 0.00 41.70 3.91
668 683 5.232463 CAGTAATTCAAAGGCATGTGCTTT 58.768 37.500 4.84 0.30 42.37 3.51
669 684 6.389091 CAGTAATTCAAAGGCATGTGCTTTA 58.611 36.000 2.68 0.00 39.53 1.85
670 685 6.867816 CAGTAATTCAAAGGCATGTGCTTTAA 59.132 34.615 2.68 0.00 39.53 1.52
671 686 7.062605 CAGTAATTCAAAGGCATGTGCTTTAAG 59.937 37.037 2.68 0.25 39.53 1.85
672 687 3.940209 TCAAAGGCATGTGCTTTAAGG 57.060 42.857 2.68 0.00 39.53 2.69
673 688 2.029110 TCAAAGGCATGTGCTTTAAGGC 60.029 45.455 1.97 1.97 39.53 4.35
674 689 1.631405 AAGGCATGTGCTTTAAGGCA 58.369 45.000 8.37 8.37 38.63 4.75
681 696 2.253513 TGCTTTAAGGCACCGAAGC 58.746 52.632 8.37 14.53 43.54 3.86
682 697 2.253513 GCTTTAAGGCACCGAAGCA 58.746 52.632 4.44 0.00 42.94 3.91
683 698 0.811281 GCTTTAAGGCACCGAAGCAT 59.189 50.000 4.44 0.00 42.94 3.79
684 699 1.202188 GCTTTAAGGCACCGAAGCATC 60.202 52.381 4.44 0.00 42.94 3.91
694 709 4.162690 GAAGCATCGTCCGGGCCT 62.163 66.667 0.00 0.00 0.00 5.19
695 710 4.162690 AAGCATCGTCCGGGCCTC 62.163 66.667 0.00 0.00 0.00 4.70
729 744 1.302033 AAGACTGCAAGCTCGGTGG 60.302 57.895 0.00 0.00 37.60 4.61
730 745 2.031163 GACTGCAAGCTCGGTGGT 59.969 61.111 0.00 0.00 37.60 4.16
731 746 2.029844 GACTGCAAGCTCGGTGGTC 61.030 63.158 0.00 0.00 37.60 4.02
734 749 2.281484 GCAAGCTCGGTGGTCCAA 60.281 61.111 0.00 0.00 0.00 3.53
736 751 1.244019 GCAAGCTCGGTGGTCCAATT 61.244 55.000 0.00 0.00 0.00 2.32
753 769 6.597672 GGTCCAATTTCCAAAGTGAAAAAGTT 59.402 34.615 1.12 0.00 37.74 2.66
835 851 2.060567 ATCCACTCATCCCCATGCCG 62.061 60.000 0.00 0.00 0.00 5.69
836 852 2.203252 CACTCATCCCCATGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
837 853 4.195334 ACTCATCCCCATGCCGGC 62.195 66.667 22.73 22.73 0.00 6.13
838 854 4.962836 CTCATCCCCATGCCGGCC 62.963 72.222 26.77 6.44 0.00 6.13
894 910 4.202524 TGACACCACCCTATAAAAACAGCT 60.203 41.667 0.00 0.00 0.00 4.24
984 1015 2.057316 GATCGATCATCTCCAGCAACG 58.943 52.381 20.52 0.00 0.00 4.10
1767 1804 2.603473 TGGGTGTCCGACCTCCTG 60.603 66.667 8.94 0.00 45.33 3.86
1877 1914 0.392729 GACGAGGAGGAGGACGAGAA 60.393 60.000 0.00 0.00 0.00 2.87
1881 1918 1.210967 GAGGAGGAGGACGAGAAGAGA 59.789 57.143 0.00 0.00 0.00 3.10
2019 2063 1.576421 CTGCTTTTGACGGCCTGAC 59.424 57.895 0.00 0.00 0.00 3.51
2026 2070 0.249868 TTGACGGCCTGACAAGACAG 60.250 55.000 0.00 0.00 37.61 3.51
2090 2134 9.884636 TTTGTAGCTTGTGTATACTTGATGTAT 57.115 29.630 4.17 0.00 43.62 2.29
2135 2179 5.815740 ACGAGATTGTAATTAGGCGAAATGT 59.184 36.000 0.00 0.00 0.00 2.71
2136 2180 6.018994 ACGAGATTGTAATTAGGCGAAATGTC 60.019 38.462 0.00 0.00 0.00 3.06
2137 2181 6.019075 CGAGATTGTAATTAGGCGAAATGTCA 60.019 38.462 0.00 0.00 0.00 3.58
2138 2182 7.251704 AGATTGTAATTAGGCGAAATGTCAG 57.748 36.000 0.00 0.00 0.00 3.51
2139 2183 6.823689 AGATTGTAATTAGGCGAAATGTCAGT 59.176 34.615 0.00 0.00 0.00 3.41
2140 2184 5.794687 TGTAATTAGGCGAAATGTCAGTG 57.205 39.130 0.00 0.00 0.00 3.66
2141 2185 4.634004 TGTAATTAGGCGAAATGTCAGTGG 59.366 41.667 0.00 0.00 0.00 4.00
2142 2186 3.627395 ATTAGGCGAAATGTCAGTGGA 57.373 42.857 0.00 0.00 0.00 4.02
2143 2187 3.627395 TTAGGCGAAATGTCAGTGGAT 57.373 42.857 0.00 0.00 0.00 3.41
2144 2188 4.746535 TTAGGCGAAATGTCAGTGGATA 57.253 40.909 0.00 0.00 0.00 2.59
2145 2189 3.845781 AGGCGAAATGTCAGTGGATAT 57.154 42.857 0.00 0.00 0.00 1.63
2146 2190 4.156455 AGGCGAAATGTCAGTGGATATT 57.844 40.909 0.00 0.00 36.54 1.28
2147 2191 4.526970 AGGCGAAATGTCAGTGGATATTT 58.473 39.130 0.00 0.00 44.44 1.40
2148 2192 4.949856 AGGCGAAATGTCAGTGGATATTTT 59.050 37.500 0.00 0.00 42.62 1.82
2149 2193 5.036737 GGCGAAATGTCAGTGGATATTTTG 58.963 41.667 8.81 8.81 42.62 2.44
2151 2195 5.883661 CGAAATGTCAGTGGATATTTTGCT 58.116 37.500 0.00 0.00 42.62 3.91
2152 2196 5.967674 CGAAATGTCAGTGGATATTTTGCTC 59.032 40.000 0.00 0.00 42.62 4.26
2153 2197 6.183360 CGAAATGTCAGTGGATATTTTGCTCT 60.183 38.462 0.00 0.00 42.62 4.09
2154 2198 7.472334 AAATGTCAGTGGATATTTTGCTCTT 57.528 32.000 0.00 0.00 40.59 2.85
2155 2199 5.885230 TGTCAGTGGATATTTTGCTCTTG 57.115 39.130 0.00 0.00 0.00 3.02
2156 2200 5.559770 TGTCAGTGGATATTTTGCTCTTGA 58.440 37.500 0.00 0.00 0.00 3.02
2157 2201 6.182627 TGTCAGTGGATATTTTGCTCTTGAT 58.817 36.000 0.00 0.00 0.00 2.57
2158 2202 6.660521 TGTCAGTGGATATTTTGCTCTTGATT 59.339 34.615 0.00 0.00 0.00 2.57
2159 2203 6.971184 GTCAGTGGATATTTTGCTCTTGATTG 59.029 38.462 0.00 0.00 0.00 2.67
2160 2204 6.885918 TCAGTGGATATTTTGCTCTTGATTGA 59.114 34.615 0.00 0.00 0.00 2.57
2161 2205 6.971184 CAGTGGATATTTTGCTCTTGATTGAC 59.029 38.462 0.00 0.00 0.00 3.18
2162 2206 6.888632 AGTGGATATTTTGCTCTTGATTGACT 59.111 34.615 0.00 0.00 0.00 3.41
2163 2207 6.971184 GTGGATATTTTGCTCTTGATTGACTG 59.029 38.462 0.00 0.00 0.00 3.51
2164 2208 6.660521 TGGATATTTTGCTCTTGATTGACTGT 59.339 34.615 0.00 0.00 0.00 3.55
2165 2209 7.177216 TGGATATTTTGCTCTTGATTGACTGTT 59.823 33.333 0.00 0.00 0.00 3.16
2166 2210 8.677300 GGATATTTTGCTCTTGATTGACTGTTA 58.323 33.333 0.00 0.00 0.00 2.41
2171 2215 7.615582 TTGCTCTTGATTGACTGTTATTAGG 57.384 36.000 0.00 0.00 0.00 2.69
2172 2216 5.586243 TGCTCTTGATTGACTGTTATTAGGC 59.414 40.000 0.00 0.00 0.00 3.93
2173 2217 5.277058 GCTCTTGATTGACTGTTATTAGGCG 60.277 44.000 0.00 0.00 0.00 5.52
2174 2218 5.972935 TCTTGATTGACTGTTATTAGGCGA 58.027 37.500 0.00 0.00 0.00 5.54
2175 2219 6.403049 TCTTGATTGACTGTTATTAGGCGAA 58.597 36.000 0.00 0.00 0.00 4.70
2176 2220 6.876789 TCTTGATTGACTGTTATTAGGCGAAA 59.123 34.615 0.00 0.00 0.00 3.46
2177 2221 7.552687 TCTTGATTGACTGTTATTAGGCGAAAT 59.447 33.333 0.00 0.00 0.00 2.17
2178 2222 7.015226 TGATTGACTGTTATTAGGCGAAATG 57.985 36.000 0.00 0.00 0.00 2.32
2184 2228 5.351465 ACTGTTATTAGGCGAAATGTCAGTG 59.649 40.000 17.23 0.00 35.20 3.66
2185 2229 4.634004 TGTTATTAGGCGAAATGTCAGTGG 59.366 41.667 0.00 0.00 0.00 4.00
2188 2232 4.746535 TTAGGCGAAATGTCAGTGGATA 57.253 40.909 0.00 0.00 0.00 2.59
2199 2243 9.346725 GAAATGTCAGTGGATATTTTGTTCTTC 57.653 33.333 0.00 0.00 42.62 2.87
2231 2275 1.070175 ACGTCTCGTCCAAATTTTGCG 60.070 47.619 3.50 3.57 33.69 4.85
2236 2280 0.506506 CGTCCAAATTTTGCGGTTGC 59.493 50.000 3.50 0.00 43.20 4.17
2244 2288 2.831685 TTTTGCGGTTGCTCTCTCTA 57.168 45.000 0.00 0.00 43.34 2.43
2245 2289 3.334583 TTTTGCGGTTGCTCTCTCTAT 57.665 42.857 0.00 0.00 43.34 1.98
2294 2338 0.035439 CAACATAGCCGGTCCCAAGT 60.035 55.000 1.90 0.00 0.00 3.16
2295 2339 0.696501 AACATAGCCGGTCCCAAGTT 59.303 50.000 1.90 0.00 0.00 2.66
2299 2343 4.011517 GCCGGTCCCAAGTTCGGA 62.012 66.667 1.90 0.00 44.69 4.55
2354 2398 3.066203 CCAACGTAAAAACTCAGCCACTT 59.934 43.478 0.00 0.00 0.00 3.16
2549 2593 0.810031 CCTTAGTGGCGCGCTACATT 60.810 55.000 41.90 28.23 0.00 2.71
2686 2730 0.739112 CTCTGACAGGGAAGCTTCGC 60.739 60.000 30.44 30.44 40.10 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 250 3.071167 CCAAAGAGTAGTAGTATGCCCCC 59.929 52.174 0.00 0.00 0.00 5.40
239 251 3.710165 ACCAAAGAGTAGTAGTATGCCCC 59.290 47.826 0.00 0.00 0.00 5.80
240 252 5.354842 AACCAAAGAGTAGTAGTATGCCC 57.645 43.478 0.00 0.00 0.00 5.36
241 253 6.535508 CAGAAACCAAAGAGTAGTAGTATGCC 59.464 42.308 0.00 0.00 0.00 4.40
242 254 7.097834 ACAGAAACCAAAGAGTAGTAGTATGC 58.902 38.462 0.00 0.00 0.00 3.14
243 255 7.760340 GGACAGAAACCAAAGAGTAGTAGTATG 59.240 40.741 0.00 0.00 0.00 2.39
244 256 7.362747 CGGACAGAAACCAAAGAGTAGTAGTAT 60.363 40.741 0.00 0.00 0.00 2.12
245 257 6.072286 CGGACAGAAACCAAAGAGTAGTAGTA 60.072 42.308 0.00 0.00 0.00 1.82
246 258 5.278858 CGGACAGAAACCAAAGAGTAGTAGT 60.279 44.000 0.00 0.00 0.00 2.73
247 259 5.162075 CGGACAGAAACCAAAGAGTAGTAG 58.838 45.833 0.00 0.00 0.00 2.57
337 349 4.687215 TGTGTGCGAGCTCAGCCC 62.687 66.667 21.97 14.47 0.00 5.19
338 350 2.666190 TTGTGTGCGAGCTCAGCC 60.666 61.111 21.97 15.54 0.00 4.85
343 355 0.179073 AGTTGACTTGTGTGCGAGCT 60.179 50.000 0.00 0.00 0.00 4.09
377 389 2.093764 GGACAATGTGAGCAGCTAGAGT 60.094 50.000 0.00 0.00 0.00 3.24
380 392 2.391616 TGGACAATGTGAGCAGCTAG 57.608 50.000 0.00 0.00 0.00 3.42
381 393 2.038952 AGTTGGACAATGTGAGCAGCTA 59.961 45.455 0.00 0.00 0.00 3.32
382 394 1.202855 AGTTGGACAATGTGAGCAGCT 60.203 47.619 0.00 0.00 0.00 4.24
383 395 1.242076 AGTTGGACAATGTGAGCAGC 58.758 50.000 0.00 0.00 0.00 5.25
415 430 6.910995 TCAGTCAAACTCAAGTAGTAGTAGC 58.089 40.000 0.00 0.00 37.50 3.58
416 431 7.024768 GCTCAGTCAAACTCAAGTAGTAGTAG 58.975 42.308 0.00 0.00 37.50 2.57
417 432 6.715718 AGCTCAGTCAAACTCAAGTAGTAGTA 59.284 38.462 0.00 0.00 37.50 1.82
418 433 5.536916 AGCTCAGTCAAACTCAAGTAGTAGT 59.463 40.000 0.00 0.00 37.50 2.73
419 434 5.861251 CAGCTCAGTCAAACTCAAGTAGTAG 59.139 44.000 0.00 0.00 37.50 2.57
420 435 5.302059 ACAGCTCAGTCAAACTCAAGTAGTA 59.698 40.000 0.00 0.00 37.50 1.82
427 442 1.269778 CGGACAGCTCAGTCAAACTCA 60.270 52.381 6.54 0.00 40.29 3.41
497 512 4.663140 CGAGCACTTTGTACGTGTACATTG 60.663 45.833 13.18 11.50 44.54 2.82
499 514 2.984471 CGAGCACTTTGTACGTGTACAT 59.016 45.455 13.18 0.00 44.54 2.29
528 543 3.509740 GAAGACTCTGGGTAAAGTACGC 58.490 50.000 0.00 0.00 41.49 4.42
578 593 3.624300 CGAAGCTGCATCGGCGAG 61.624 66.667 18.46 8.85 45.35 5.03
583 598 2.099062 GCAACCGAAGCTGCATCG 59.901 61.111 19.17 19.17 38.48 3.84
584 599 2.099062 CGCAACCGAAGCTGCATC 59.901 61.111 1.02 0.00 38.52 3.91
585 600 3.434319 CCGCAACCGAAGCTGCAT 61.434 61.111 1.02 0.00 38.52 3.96
588 603 4.389576 GTGCCGCAACCGAAGCTG 62.390 66.667 0.00 0.00 36.29 4.24
589 604 4.927782 TGTGCCGCAACCGAAGCT 62.928 61.111 0.00 0.00 36.29 3.74
590 605 3.737172 ATGTGCCGCAACCGAAGC 61.737 61.111 0.00 0.00 36.29 3.86
591 606 2.176546 CATGTGCCGCAACCGAAG 59.823 61.111 0.00 0.00 36.29 3.79
592 607 4.036804 GCATGTGCCGCAACCGAA 62.037 61.111 0.00 0.00 36.29 4.30
602 617 1.610554 ATCCAAAGGCAGGCATGTGC 61.611 55.000 0.00 0.00 43.19 4.57
603 618 0.458669 GATCCAAAGGCAGGCATGTG 59.541 55.000 0.00 0.00 0.00 3.21
604 619 0.040058 TGATCCAAAGGCAGGCATGT 59.960 50.000 0.00 0.00 0.00 3.21
605 620 0.458669 GTGATCCAAAGGCAGGCATG 59.541 55.000 0.00 0.00 0.00 4.06
606 621 0.333993 AGTGATCCAAAGGCAGGCAT 59.666 50.000 0.00 0.00 0.00 4.40
607 622 0.609957 CAGTGATCCAAAGGCAGGCA 60.610 55.000 0.00 0.00 0.00 4.75
608 623 0.322816 TCAGTGATCCAAAGGCAGGC 60.323 55.000 0.00 0.00 0.00 4.85
609 624 1.271543 TGTCAGTGATCCAAAGGCAGG 60.272 52.381 0.00 0.00 0.00 4.85
610 625 2.189594 TGTCAGTGATCCAAAGGCAG 57.810 50.000 0.00 0.00 0.00 4.85
611 626 2.224843 ACATGTCAGTGATCCAAAGGCA 60.225 45.455 0.00 0.00 0.00 4.75
612 627 2.163010 CACATGTCAGTGATCCAAAGGC 59.837 50.000 0.00 0.00 42.05 4.35
613 628 2.751259 CCACATGTCAGTGATCCAAAGG 59.249 50.000 0.00 0.00 42.05 3.11
614 629 2.751259 CCCACATGTCAGTGATCCAAAG 59.249 50.000 0.00 0.00 42.05 2.77
615 630 2.794103 CCCACATGTCAGTGATCCAAA 58.206 47.619 0.00 0.00 42.05 3.28
616 631 1.614051 GCCCACATGTCAGTGATCCAA 60.614 52.381 0.00 0.00 42.05 3.53
617 632 0.035152 GCCCACATGTCAGTGATCCA 60.035 55.000 0.00 0.00 42.05 3.41
618 633 0.749454 GGCCCACATGTCAGTGATCC 60.749 60.000 0.00 0.00 42.05 3.36
619 634 0.749454 GGGCCCACATGTCAGTGATC 60.749 60.000 19.95 0.00 42.05 2.92
620 635 1.304282 GGGCCCACATGTCAGTGAT 59.696 57.895 19.95 0.00 42.05 3.06
621 636 2.152729 TGGGCCCACATGTCAGTGA 61.153 57.895 24.45 0.00 42.05 3.41
622 637 1.973281 GTGGGCCCACATGTCAGTG 60.973 63.158 43.88 0.00 45.53 3.66
623 638 2.436109 GTGGGCCCACATGTCAGT 59.564 61.111 43.88 0.00 45.53 3.41
635 650 1.473258 TGAATTACTGGCATGTGGGC 58.527 50.000 0.00 0.00 43.73 5.36
636 651 3.119029 CCTTTGAATTACTGGCATGTGGG 60.119 47.826 0.00 0.00 0.00 4.61
637 652 3.676873 GCCTTTGAATTACTGGCATGTGG 60.677 47.826 0.00 0.00 42.79 4.17
638 653 3.514645 GCCTTTGAATTACTGGCATGTG 58.485 45.455 0.00 0.00 42.79 3.21
639 654 3.874392 GCCTTTGAATTACTGGCATGT 57.126 42.857 0.00 0.00 42.79 3.21
643 658 3.514645 CACATGCCTTTGAATTACTGGC 58.485 45.455 0.00 0.00 43.49 4.85
644 659 3.194116 AGCACATGCCTTTGAATTACTGG 59.806 43.478 0.00 0.00 43.38 4.00
645 660 4.445452 AGCACATGCCTTTGAATTACTG 57.555 40.909 0.00 0.00 43.38 2.74
646 661 5.473066 AAAGCACATGCCTTTGAATTACT 57.527 34.783 10.22 0.00 43.38 2.24
647 662 6.311200 CCTTAAAGCACATGCCTTTGAATTAC 59.689 38.462 17.53 0.00 43.38 1.89
648 663 6.397272 CCTTAAAGCACATGCCTTTGAATTA 58.603 36.000 17.53 0.44 43.38 1.40
649 664 5.240121 CCTTAAAGCACATGCCTTTGAATT 58.760 37.500 17.53 1.40 43.38 2.17
650 665 4.824289 CCTTAAAGCACATGCCTTTGAAT 58.176 39.130 17.53 0.04 43.38 2.57
651 666 3.554752 GCCTTAAAGCACATGCCTTTGAA 60.555 43.478 17.53 9.73 43.38 2.69
652 667 2.029110 GCCTTAAAGCACATGCCTTTGA 60.029 45.455 17.53 11.11 43.38 2.69
653 668 2.288948 TGCCTTAAAGCACATGCCTTTG 60.289 45.455 17.53 6.57 43.38 2.77
654 669 1.969923 TGCCTTAAAGCACATGCCTTT 59.030 42.857 14.18 14.18 43.38 3.11
655 670 1.631405 TGCCTTAAAGCACATGCCTT 58.369 45.000 0.00 0.00 43.38 4.35
656 671 3.362040 TGCCTTAAAGCACATGCCT 57.638 47.368 0.00 0.00 43.38 4.75
663 678 2.253513 GCTTCGGTGCCTTAAAGCA 58.746 52.632 0.00 0.00 42.80 3.91
664 679 0.811281 ATGCTTCGGTGCCTTAAAGC 59.189 50.000 10.77 10.77 43.41 3.51
665 680 1.062587 CGATGCTTCGGTGCCTTAAAG 59.937 52.381 13.82 0.00 41.74 1.85
666 681 1.083489 CGATGCTTCGGTGCCTTAAA 58.917 50.000 13.82 0.00 41.74 1.52
667 682 2.762360 CGATGCTTCGGTGCCTTAA 58.238 52.632 13.82 0.00 41.74 1.85
668 683 4.513519 CGATGCTTCGGTGCCTTA 57.486 55.556 13.82 0.00 41.74 2.69
677 692 4.162690 AGGCCCGGACGATGCTTC 62.163 66.667 0.73 0.00 0.00 3.86
678 693 4.162690 GAGGCCCGGACGATGCTT 62.163 66.667 0.73 0.00 0.00 3.91
691 706 3.780173 AGAGCAAGGAGGCGAGGC 61.780 66.667 0.00 0.00 39.27 4.70
692 707 2.186384 CAGAGCAAGGAGGCGAGG 59.814 66.667 0.00 0.00 39.27 4.63
693 708 2.511145 GCAGAGCAAGGAGGCGAG 60.511 66.667 0.00 0.00 39.27 5.03
694 709 2.882677 TTGCAGAGCAAGGAGGCGA 61.883 57.895 0.00 0.00 43.99 5.54
695 710 2.359107 TTGCAGAGCAAGGAGGCG 60.359 61.111 0.00 0.00 43.99 5.52
725 740 2.962421 TCACTTTGGAAATTGGACCACC 59.038 45.455 0.00 0.00 35.81 4.61
729 744 7.609760 AACTTTTTCACTTTGGAAATTGGAC 57.390 32.000 0.00 0.00 36.71 4.02
730 745 9.541143 GATAACTTTTTCACTTTGGAAATTGGA 57.459 29.630 0.00 0.00 36.71 3.53
731 746 8.773645 GGATAACTTTTTCACTTTGGAAATTGG 58.226 33.333 0.00 0.00 36.71 3.16
734 749 9.325198 GTTGGATAACTTTTTCACTTTGGAAAT 57.675 29.630 0.00 0.00 34.21 2.17
736 751 6.975772 CGTTGGATAACTTTTTCACTTTGGAA 59.024 34.615 0.00 0.00 34.60 3.53
753 769 1.134521 GCTCCATGGACACGTTGGATA 60.135 52.381 11.44 0.00 0.00 2.59
855 871 2.513204 CATGTGGCTCGGCAGAGG 60.513 66.667 15.89 0.00 44.51 3.69
952 968 3.190323 ATCGATCCCGGCGTACGTG 62.190 63.158 17.90 9.81 42.24 4.49
1156 1187 4.681978 GAGCACCTCGTTGGCCGT 62.682 66.667 0.00 0.00 40.22 5.68
1539 1576 0.832135 AGCAAGAACGGTGGGAGAGA 60.832 55.000 0.00 0.00 0.00 3.10
1641 1678 3.567797 GCGAAGATGGCTGCGGAC 61.568 66.667 0.00 0.00 43.65 4.79
1713 1750 4.516195 GCGGGAGAAGAGGCCGAC 62.516 72.222 0.00 0.00 0.00 4.79
1843 1880 2.802667 CGTCGCAGCATTCTTCCGG 61.803 63.158 0.00 0.00 0.00 5.14
1877 1914 2.586792 GTTCCATGGCCGCTCTCT 59.413 61.111 6.96 0.00 0.00 3.10
1980 2017 1.285950 CGTGAGGACGTTGAGCAGA 59.714 57.895 0.00 0.00 40.91 4.26
2019 2063 7.327761 GGAATCAAATCAATCAACACTGTCTTG 59.672 37.037 0.00 0.00 0.00 3.02
2026 2070 8.712285 ATCAATGGAATCAAATCAATCAACAC 57.288 30.769 0.00 0.00 0.00 3.32
2082 2126 9.045223 CATTTTGGAACGATCTCTATACATCAA 57.955 33.333 0.00 0.00 0.00 2.57
2090 2134 6.160684 TCGTTTCATTTTGGAACGATCTCTA 58.839 36.000 17.35 0.00 30.89 2.43
2101 2145 9.289303 CCTAATTACAATCTCGTTTCATTTTGG 57.711 33.333 0.00 0.00 0.00 3.28
2135 2179 6.885918 TCAATCAAGAGCAAAATATCCACTGA 59.114 34.615 0.00 0.00 0.00 3.41
2136 2180 6.971184 GTCAATCAAGAGCAAAATATCCACTG 59.029 38.462 0.00 0.00 0.00 3.66
2137 2181 6.888632 AGTCAATCAAGAGCAAAATATCCACT 59.111 34.615 0.00 0.00 0.00 4.00
2138 2182 6.971184 CAGTCAATCAAGAGCAAAATATCCAC 59.029 38.462 0.00 0.00 0.00 4.02
2139 2183 6.660521 ACAGTCAATCAAGAGCAAAATATCCA 59.339 34.615 0.00 0.00 0.00 3.41
2140 2184 7.093322 ACAGTCAATCAAGAGCAAAATATCC 57.907 36.000 0.00 0.00 0.00 2.59
2145 2189 8.514594 CCTAATAACAGTCAATCAAGAGCAAAA 58.485 33.333 0.00 0.00 0.00 2.44
2146 2190 7.362056 GCCTAATAACAGTCAATCAAGAGCAAA 60.362 37.037 0.00 0.00 0.00 3.68
2147 2191 6.094048 GCCTAATAACAGTCAATCAAGAGCAA 59.906 38.462 0.00 0.00 0.00 3.91
2148 2192 5.586243 GCCTAATAACAGTCAATCAAGAGCA 59.414 40.000 0.00 0.00 0.00 4.26
2149 2193 5.277058 CGCCTAATAACAGTCAATCAAGAGC 60.277 44.000 0.00 0.00 0.00 4.09
2150 2194 6.042777 TCGCCTAATAACAGTCAATCAAGAG 58.957 40.000 0.00 0.00 0.00 2.85
2151 2195 5.972935 TCGCCTAATAACAGTCAATCAAGA 58.027 37.500 0.00 0.00 0.00 3.02
2152 2196 6.662414 TTCGCCTAATAACAGTCAATCAAG 57.338 37.500 0.00 0.00 0.00 3.02
2153 2197 7.120579 ACATTTCGCCTAATAACAGTCAATCAA 59.879 33.333 0.00 0.00 0.00 2.57
2154 2198 6.597672 ACATTTCGCCTAATAACAGTCAATCA 59.402 34.615 0.00 0.00 0.00 2.57
2155 2199 7.016361 ACATTTCGCCTAATAACAGTCAATC 57.984 36.000 0.00 0.00 0.00 2.67
2156 2200 6.597672 TGACATTTCGCCTAATAACAGTCAAT 59.402 34.615 0.00 0.00 30.32 2.57
2157 2201 5.935206 TGACATTTCGCCTAATAACAGTCAA 59.065 36.000 0.00 0.00 30.32 3.18
2158 2202 5.483811 TGACATTTCGCCTAATAACAGTCA 58.516 37.500 0.00 0.00 0.00 3.41
2159 2203 5.581085 ACTGACATTTCGCCTAATAACAGTC 59.419 40.000 0.00 0.00 32.71 3.51
2160 2204 5.351465 CACTGACATTTCGCCTAATAACAGT 59.649 40.000 0.00 0.00 35.50 3.55
2161 2205 5.220662 CCACTGACATTTCGCCTAATAACAG 60.221 44.000 0.00 0.00 0.00 3.16
2162 2206 4.634004 CCACTGACATTTCGCCTAATAACA 59.366 41.667 0.00 0.00 0.00 2.41
2163 2207 4.873827 TCCACTGACATTTCGCCTAATAAC 59.126 41.667 0.00 0.00 0.00 1.89
2164 2208 5.092554 TCCACTGACATTTCGCCTAATAA 57.907 39.130 0.00 0.00 0.00 1.40
2165 2209 4.746535 TCCACTGACATTTCGCCTAATA 57.253 40.909 0.00 0.00 0.00 0.98
2166 2210 3.627395 TCCACTGACATTTCGCCTAAT 57.373 42.857 0.00 0.00 0.00 1.73
2167 2211 3.627395 ATCCACTGACATTTCGCCTAA 57.373 42.857 0.00 0.00 0.00 2.69
2168 2212 4.955811 ATATCCACTGACATTTCGCCTA 57.044 40.909 0.00 0.00 0.00 3.93
2169 2213 3.845781 ATATCCACTGACATTTCGCCT 57.154 42.857 0.00 0.00 0.00 5.52
2170 2214 4.900635 AAATATCCACTGACATTTCGCC 57.099 40.909 0.00 0.00 0.00 5.54
2171 2215 5.640732 ACAAAATATCCACTGACATTTCGC 58.359 37.500 0.00 0.00 0.00 4.70
2172 2216 7.530010 AGAACAAAATATCCACTGACATTTCG 58.470 34.615 0.00 0.00 0.00 3.46
2173 2217 9.346725 GAAGAACAAAATATCCACTGACATTTC 57.653 33.333 0.00 0.00 0.00 2.17
2174 2218 8.859090 TGAAGAACAAAATATCCACTGACATTT 58.141 29.630 0.00 0.00 0.00 2.32
2175 2219 8.408043 TGAAGAACAAAATATCCACTGACATT 57.592 30.769 0.00 0.00 0.00 2.71
2176 2220 8.585471 ATGAAGAACAAAATATCCACTGACAT 57.415 30.769 0.00 0.00 0.00 3.06
2177 2221 8.298854 CAATGAAGAACAAAATATCCACTGACA 58.701 33.333 0.00 0.00 0.00 3.58
2178 2222 8.514594 TCAATGAAGAACAAAATATCCACTGAC 58.485 33.333 0.00 0.00 0.00 3.51
2199 2243 3.120991 GGACGAGACGTTTTCAGTCAATG 60.121 47.826 17.98 0.00 41.37 2.82
2231 2275 9.601217 TTAAAATGACTTATAGAGAGAGCAACC 57.399 33.333 0.00 0.00 0.00 3.77
2236 2280 9.672086 CGGAGTTAAAATGACTTATAGAGAGAG 57.328 37.037 0.00 0.00 0.00 3.20
2244 2288 7.280356 ACATAGGCGGAGTTAAAATGACTTAT 58.720 34.615 0.00 0.00 0.00 1.73
2245 2289 6.646267 ACATAGGCGGAGTTAAAATGACTTA 58.354 36.000 0.00 0.00 0.00 2.24
2294 2338 2.504175 CAACCCTCCTCCTTTATCCGAA 59.496 50.000 0.00 0.00 0.00 4.30
2295 2339 2.116238 CAACCCTCCTCCTTTATCCGA 58.884 52.381 0.00 0.00 0.00 4.55
2299 2343 4.660771 CCTATCACAACCCTCCTCCTTTAT 59.339 45.833 0.00 0.00 0.00 1.40
2354 2398 8.434589 AATCTTTTGGGTTTCATCTCCATAAA 57.565 30.769 0.00 0.00 0.00 1.40
2478 2522 4.157840 CCATCGTATCCGGATCAAGATACA 59.842 45.833 23.08 15.56 43.27 2.29
2549 2593 4.155733 CACTACATCCGGGCGCCA 62.156 66.667 30.85 8.42 0.00 5.69
2686 2730 0.928922 CTGCTGCATCAACTAGCTCG 59.071 55.000 1.31 0.00 38.25 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.