Multiple sequence alignment - TraesCS5A01G498800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G498800 chr5A 100.000 5806 0 0 1 5806 665770954 665776759 0.000000e+00 10722.0
1 TraesCS5A01G498800 chr5A 82.069 145 20 6 5219 5360 295076287 295076428 1.020000e-22 119.0
2 TraesCS5A01G498800 chr5A 96.774 62 2 0 3933 3994 665774828 665774889 2.860000e-18 104.0
3 TraesCS5A01G498800 chr5A 96.774 62 2 0 3875 3936 665774886 665774947 2.860000e-18 104.0
4 TraesCS5A01G498800 chr5A 88.235 85 9 1 5480 5563 78965545 78965461 3.700000e-17 100.0
5 TraesCS5A01G498800 chr4D 94.013 1804 53 19 655 2426 484737278 484739058 0.000000e+00 2682.0
6 TraesCS5A01G498800 chr4D 85.924 1229 112 30 3933 5117 484740824 484742035 0.000000e+00 1254.0
7 TraesCS5A01G498800 chr4D 90.700 871 73 5 2429 3293 484739143 484740011 0.000000e+00 1153.0
8 TraesCS5A01G498800 chr4D 85.505 545 34 9 3412 3936 484740374 484740893 1.430000e-145 527.0
9 TraesCS5A01G498800 chr4D 80.923 650 61 37 1 622 484735602 484736216 6.860000e-124 455.0
10 TraesCS5A01G498800 chr4D 97.701 87 2 0 3326 3412 484740202 484740288 3.620000e-32 150.0
11 TraesCS5A01G498800 chr4D 88.421 95 8 3 5473 5566 320593730 320593822 1.710000e-20 111.0
12 TraesCS5A01G498800 chr4D 85.882 85 8 3 5480 5560 503562193 503562109 2.880000e-13 87.9
13 TraesCS5A01G498800 chr4B 94.002 1684 61 21 717 2371 617624074 617625746 0.000000e+00 2514.0
14 TraesCS5A01G498800 chr4B 89.192 1138 87 16 3933 5035 617627273 617628409 0.000000e+00 1387.0
15 TraesCS5A01G498800 chr4B 88.361 610 53 10 5212 5806 617691833 617692439 0.000000e+00 717.0
16 TraesCS5A01G498800 chr4B 84.743 544 33 16 3439 3935 617626801 617627341 3.120000e-137 499.0
17 TraesCS5A01G498800 chr4B 90.490 347 33 0 2896 3242 617626212 617626558 5.300000e-125 459.0
18 TraesCS5A01G498800 chr4B 84.615 234 27 5 353 579 617622407 617622638 2.110000e-54 224.0
19 TraesCS5A01G498800 chr4B 78.491 265 40 12 1334 1597 382687281 382687033 2.170000e-34 158.0
20 TraesCS5A01G498800 chr4B 93.069 101 6 1 5102 5202 617690753 617690852 4.690000e-31 147.0
21 TraesCS5A01G498800 chr4B 81.379 145 23 4 5219 5361 413830865 413830723 1.320000e-21 115.0
22 TraesCS5A01G498800 chr4B 87.500 96 11 1 5475 5569 483511719 483511814 6.150000e-20 110.0
23 TraesCS5A01G498800 chr4B 89.286 84 8 1 5022 5104 617690576 617690659 2.860000e-18 104.0
24 TraesCS5A01G498800 chr3D 84.722 144 19 3 5219 5361 85449380 85449521 2.180000e-29 141.0
25 TraesCS5A01G498800 chr3D 87.059 85 10 1 5480 5563 481970959 481970875 1.720000e-15 95.3
26 TraesCS5A01G498800 chr6A 83.571 140 20 2 5223 5361 263886881 263887018 1.700000e-25 128.0
27 TraesCS5A01G498800 chr3B 82.759 145 21 4 5219 5361 135687316 135687458 6.110000e-25 126.0
28 TraesCS5A01G498800 chr3B 84.884 86 12 1 5480 5564 706771128 706771043 1.040000e-12 86.1
29 TraesCS5A01G498800 chr2D 82.979 141 21 2 5219 5358 471216278 471216416 2.200000e-24 124.0
30 TraesCS5A01G498800 chr2D 84.694 98 15 0 5471 5568 360992077 360992174 1.330000e-16 99.0
31 TraesCS5A01G498800 chr2A 81.690 142 21 4 5219 5358 612845823 612845961 4.760000e-21 113.0
32 TraesCS5A01G498800 chr1A 81.507 146 19 5 5219 5360 117188159 117188300 4.760000e-21 113.0
33 TraesCS5A01G498800 chr7B 88.506 87 9 1 5480 5565 230347533 230347619 2.860000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G498800 chr5A 665770954 665776759 5805 False 3643.333333 10722 97.849333 1 5806 3 chr5A.!!$F2 5805
1 TraesCS5A01G498800 chr4D 484735602 484742035 6433 False 1036.833333 2682 89.127667 1 5117 6 chr4D.!!$F2 5116
2 TraesCS5A01G498800 chr4B 617622407 617628409 6002 False 1016.600000 2514 88.608400 353 5035 5 chr4B.!!$F2 4682
3 TraesCS5A01G498800 chr4B 617690576 617692439 1863 False 322.666667 717 90.238667 5022 5806 3 chr4B.!!$F3 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 3154 0.386476 CCATCCATTTCCGCACATGG 59.614 55.000 0.00 0.00 41.39 3.66 F
1119 3517 1.004918 GGACGTGGTCACCTTCCTG 60.005 63.158 0.00 0.00 33.68 3.86 F
2261 4664 1.076024 AGTTCATGAACCATGTGGCCT 59.924 47.619 30.34 9.78 41.98 5.19 F
3171 5715 0.389817 TGTTCAGAACCGATCGCCTG 60.390 55.000 10.32 15.49 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2437 4978 0.589223 TTTTAGCTTTGACGGTGCCG 59.411 50.0 9.29 9.29 46.03 5.69 R
2635 5177 0.616395 TGCGGTCTGGACTCCCAATA 60.616 55.0 0.67 0.00 42.98 1.90 R
3732 6576 0.250038 GCAGCTGGACAGTGTGAAGA 60.250 55.0 17.12 0.00 0.00 2.87 R
5072 7953 0.387112 GCACTTGCAGCATTTACGCA 60.387 50.0 0.00 0.00 41.59 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.277683 GCAGATATTGCGATTTGTGAGACAT 60.278 40.000 5.81 0.00 44.09 3.06
38 39 6.134061 CAGATATTGCGATTTGTGAGACATG 58.866 40.000 0.00 0.00 0.00 3.21
39 40 5.819379 AGATATTGCGATTTGTGAGACATGT 59.181 36.000 0.00 0.00 0.00 3.21
45 49 3.665409 CGATTTGTGAGACATGTTGCAAC 59.335 43.478 22.83 22.83 0.00 4.17
74 78 6.808829 AGGAATATATGTTGCAAATGGTGTG 58.191 36.000 0.00 0.00 0.00 3.82
82 86 4.331992 TGTTGCAAATGGTGTGACAAAATG 59.668 37.500 0.00 0.00 0.00 2.32
83 87 4.134379 TGCAAATGGTGTGACAAAATGT 57.866 36.364 0.00 0.00 0.00 2.71
84 88 4.511527 TGCAAATGGTGTGACAAAATGTT 58.488 34.783 0.00 0.00 0.00 2.71
85 89 4.331992 TGCAAATGGTGTGACAAAATGTTG 59.668 37.500 0.00 0.00 40.84 3.33
97 101 5.675684 ACAAAATGTTGTGAGGTCCTTTT 57.324 34.783 0.00 0.00 46.40 2.27
98 102 6.048732 ACAAAATGTTGTGAGGTCCTTTTT 57.951 33.333 0.00 0.00 46.40 1.94
99 103 6.106003 ACAAAATGTTGTGAGGTCCTTTTTC 58.894 36.000 0.00 0.00 46.40 2.29
100 104 6.070824 ACAAAATGTTGTGAGGTCCTTTTTCT 60.071 34.615 0.00 0.00 46.40 2.52
101 105 6.544928 AAATGTTGTGAGGTCCTTTTTCTT 57.455 33.333 0.00 0.00 0.00 2.52
102 106 6.544928 AATGTTGTGAGGTCCTTTTTCTTT 57.455 33.333 0.00 0.00 0.00 2.52
103 107 7.654022 AATGTTGTGAGGTCCTTTTTCTTTA 57.346 32.000 0.00 0.00 0.00 1.85
104 108 6.445357 TGTTGTGAGGTCCTTTTTCTTTAC 57.555 37.500 0.00 0.00 0.00 2.01
105 109 6.184789 TGTTGTGAGGTCCTTTTTCTTTACT 58.815 36.000 0.00 0.00 0.00 2.24
106 110 7.340256 TGTTGTGAGGTCCTTTTTCTTTACTA 58.660 34.615 0.00 0.00 0.00 1.82
107 111 7.497909 TGTTGTGAGGTCCTTTTTCTTTACTAG 59.502 37.037 0.00 0.00 0.00 2.57
108 112 7.369551 TGTGAGGTCCTTTTTCTTTACTAGA 57.630 36.000 0.00 0.00 0.00 2.43
109 113 7.442656 TGTGAGGTCCTTTTTCTTTACTAGAG 58.557 38.462 0.00 0.00 33.51 2.43
134 138 3.890674 GTCCATTGGACGGTGCTC 58.109 61.111 19.65 0.00 43.14 4.26
151 155 1.205655 GCTCAGTCCAGCACACATCTA 59.794 52.381 0.00 0.00 39.43 1.98
176 180 2.733858 GCAAAAGTTCAACGGTTGAGCA 60.734 45.455 30.51 14.23 42.51 4.26
177 181 3.506810 CAAAAGTTCAACGGTTGAGCAA 58.493 40.909 30.51 13.59 42.51 3.91
180 184 2.571212 AGTTCAACGGTTGAGCAATCA 58.429 42.857 30.51 12.30 42.51 2.57
181 185 2.549754 AGTTCAACGGTTGAGCAATCAG 59.450 45.455 30.51 2.20 42.51 2.90
182 186 0.874390 TCAACGGTTGAGCAATCAGC 59.126 50.000 19.07 0.00 46.19 4.26
209 213 5.046807 ACACTTAGACTTAACAAGCCCGTAT 60.047 40.000 0.00 0.00 0.00 3.06
247 251 7.040686 ACACTATCAAATATATTTGGTTCCCGC 60.041 37.037 29.22 0.00 45.39 6.13
253 257 7.547370 TCAAATATATTTGGTTCCCGCAAAAAG 59.453 33.333 29.22 6.54 45.39 2.27
264 268 4.376146 TCCCGCAAAAAGAAAATCAAAGG 58.624 39.130 0.00 0.00 0.00 3.11
265 269 4.100189 TCCCGCAAAAAGAAAATCAAAGGA 59.900 37.500 0.00 0.00 0.00 3.36
266 270 4.996758 CCCGCAAAAAGAAAATCAAAGGAT 59.003 37.500 0.00 0.00 34.43 3.24
267 271 5.120674 CCCGCAAAAAGAAAATCAAAGGATC 59.879 40.000 0.00 0.00 31.88 3.36
271 275 7.169645 CGCAAAAAGAAAATCAAAGGATCTTGA 59.830 33.333 0.34 0.34 39.56 3.02
272 276 8.278408 GCAAAAAGAAAATCAAAGGATCTTGAC 58.722 33.333 0.00 0.00 38.12 3.18
284 288 9.159254 TCAAAGGATCTTGACTATGGTATATGT 57.841 33.333 0.00 0.00 30.31 2.29
318 322 7.090953 TCTTTCTTGAAATAAAACCACGTGT 57.909 32.000 15.65 0.00 0.00 4.49
319 323 8.211116 TCTTTCTTGAAATAAAACCACGTGTA 57.789 30.769 15.65 0.00 0.00 2.90
320 324 8.124199 TCTTTCTTGAAATAAAACCACGTGTAC 58.876 33.333 15.65 0.00 0.00 2.90
321 325 7.556733 TTCTTGAAATAAAACCACGTGTACT 57.443 32.000 15.65 0.00 0.00 2.73
322 326 7.181143 TCTTGAAATAAAACCACGTGTACTC 57.819 36.000 15.65 2.02 0.00 2.59
324 328 6.533819 TGAAATAAAACCACGTGTACTCTG 57.466 37.500 15.65 0.00 0.00 3.35
325 329 5.049954 TGAAATAAAACCACGTGTACTCTGC 60.050 40.000 15.65 0.00 0.00 4.26
327 331 2.319136 AAACCACGTGTACTCTGCAA 57.681 45.000 15.65 0.00 0.00 4.08
397 416 6.387465 TCGATAACACTTCTACTTTGTCTGG 58.613 40.000 0.00 0.00 0.00 3.86
413 437 5.910355 TGTCTGGAAATGATATCCATCCA 57.090 39.130 16.13 16.13 45.57 3.41
415 439 5.006386 GTCTGGAAATGATATCCATCCACC 58.994 45.833 14.09 7.14 45.57 4.61
429 453 2.278849 CCACCAAATGGCTGCATCA 58.721 52.632 0.50 0.00 43.24 3.07
436 460 3.181488 CCAAATGGCTGCATCATAACGAA 60.181 43.478 0.50 0.00 0.00 3.85
443 469 4.864247 GGCTGCATCATAACGAAAACAATT 59.136 37.500 0.50 0.00 0.00 2.32
444 470 5.348451 GGCTGCATCATAACGAAAACAATTT 59.652 36.000 0.50 0.00 0.00 1.82
452 478 6.640499 TCATAACGAAAACAATTTGAGCCTTG 59.360 34.615 2.79 0.00 0.00 3.61
453 479 3.123050 ACGAAAACAATTTGAGCCTTGC 58.877 40.909 2.79 0.00 0.00 4.01
463 489 2.982130 AGCCTTGCTCCTACACGG 59.018 61.111 0.00 0.00 30.62 4.94
469 495 1.139058 CTTGCTCCTACACGGCCTTAT 59.861 52.381 0.00 0.00 0.00 1.73
480 506 3.560068 ACACGGCCTTATCAAATCGATTC 59.440 43.478 11.83 0.00 35.39 2.52
495 521 9.102757 TCAAATCGATTCTGATAAAGGAAGAAG 57.897 33.333 11.83 0.00 33.67 2.85
508 534 2.307686 AGGAAGAAGGCCCATTACGAAA 59.692 45.455 0.00 0.00 0.00 3.46
512 538 5.337250 GGAAGAAGGCCCATTACGAAATTTT 60.337 40.000 0.00 0.00 0.00 1.82
513 539 5.324784 AGAAGGCCCATTACGAAATTTTC 57.675 39.130 0.00 0.00 0.00 2.29
527 553 4.379394 CGAAATTTTCGCTCTCCCATTTCA 60.379 41.667 17.61 0.00 46.97 2.69
562 588 6.892658 AAATTATTGGTTTTTGGGGCTTTC 57.107 33.333 0.00 0.00 0.00 2.62
583 1445 8.480066 GCTTTCTTTTCCTTTTTCTCAAATACG 58.520 33.333 0.00 0.00 0.00 3.06
585 1447 8.850454 TTCTTTTCCTTTTTCTCAAATACGTG 57.150 30.769 0.00 0.00 0.00 4.49
589 1451 4.454504 TCCTTTTTCTCAAATACGTGCTCC 59.545 41.667 0.00 0.00 0.00 4.70
624 1886 7.973944 AGATTGCTTACCGGTCAATTAATTTTC 59.026 33.333 12.40 2.15 31.30 2.29
627 2927 7.309920 TGCTTACCGGTCAATTAATTTTCTTC 58.690 34.615 12.40 0.00 0.00 2.87
652 2952 9.298250 TCTTCTTCTGAAATGTACTACTACTGT 57.702 33.333 0.00 0.00 0.00 3.55
662 2962 6.808008 TGTACTACTACTGTACCAGTCAAC 57.192 41.667 0.00 0.00 41.21 3.18
693 2993 1.003331 CACCGTACACATGCACGTTTT 60.003 47.619 12.36 0.00 36.44 2.43
705 3005 2.098298 CGTTTTGCCCGCTGATCG 59.902 61.111 0.00 0.00 38.08 3.69
710 3010 3.604129 TTGCCCGCTGATCGCAGAA 62.604 57.895 9.58 0.00 45.17 3.02
779 3154 0.386476 CCATCCATTTCCGCACATGG 59.614 55.000 0.00 0.00 41.39 3.66
890 3268 3.769844 CAGGGAGAAAGCAGTTACTCCTA 59.230 47.826 0.00 0.00 45.52 2.94
891 3269 3.770388 AGGGAGAAAGCAGTTACTCCTAC 59.230 47.826 0.00 0.00 45.52 3.18
892 3270 3.770388 GGGAGAAAGCAGTTACTCCTACT 59.230 47.826 0.00 0.00 45.52 2.57
893 3271 4.142116 GGGAGAAAGCAGTTACTCCTACTC 60.142 50.000 0.00 3.14 45.52 2.59
894 3272 4.439016 GGAGAAAGCAGTTACTCCTACTCG 60.439 50.000 0.00 0.00 43.64 4.18
895 3273 3.444388 AGAAAGCAGTTACTCCTACTCGG 59.556 47.826 0.00 0.00 0.00 4.63
896 3274 2.803030 AGCAGTTACTCCTACTCGGA 57.197 50.000 0.00 0.00 40.30 4.55
939 3331 4.368808 CACCCGCACGCACGAAAG 62.369 66.667 0.00 0.00 34.06 2.62
1119 3517 1.004918 GGACGTGGTCACCTTCCTG 60.005 63.158 0.00 0.00 33.68 3.86
2261 4664 1.076024 AGTTCATGAACCATGTGGCCT 59.924 47.619 30.34 9.78 41.98 5.19
2310 4729 3.869065 TCCGGCATTTTCTTCGATTAGT 58.131 40.909 0.00 0.00 0.00 2.24
2437 4978 6.263516 TGAACATATATACTACTCCGCACC 57.736 41.667 0.00 0.00 0.00 5.01
2457 4998 1.199097 CGGCACCGTCAAAGCTAAAAT 59.801 47.619 0.00 0.00 34.35 1.82
2497 5039 7.894376 ACGATTCGGTTTGAGTTCTAAATTA 57.106 32.000 11.29 0.00 0.00 1.40
2520 5062 5.226194 TGCTTTCATTTTGTTTAGGGCAT 57.774 34.783 0.00 0.00 0.00 4.40
2531 5073 2.923020 GTTTAGGGCATGCGACATTTTG 59.077 45.455 12.44 0.00 0.00 2.44
2582 5124 8.729805 ATTTAAAATGTCTCTCTGGATCACTC 57.270 34.615 0.00 0.00 0.00 3.51
2650 5192 4.553330 TGTTCTTATTGGGAGTCCAGAC 57.447 45.455 12.30 0.00 45.04 3.51
2652 5194 2.108168 TCTTATTGGGAGTCCAGACCG 58.892 52.381 12.30 0.00 45.04 4.79
2656 5198 2.184020 TTGGGAGTCCAGACCGCATG 62.184 60.000 12.30 0.00 45.04 4.06
2672 5214 3.190327 CCGCATGGTATTTTTGACAGACA 59.810 43.478 0.00 0.00 0.00 3.41
2684 5226 7.537596 TTTTTGACAGACAACATGGGATAAT 57.462 32.000 0.00 0.00 38.29 1.28
2733 5277 4.621510 GCATCATGTGTGAGTAGTTCAGGA 60.622 45.833 5.27 0.00 37.87 3.86
2746 5290 5.707298 AGTAGTTCAGGATGTGTTTGAATGG 59.293 40.000 0.00 0.00 37.40 3.16
2750 5294 1.895131 AGGATGTGTTTGAATGGTGCC 59.105 47.619 0.00 0.00 0.00 5.01
2751 5295 1.617850 GGATGTGTTTGAATGGTGCCA 59.382 47.619 0.00 0.00 0.00 4.92
2752 5296 2.353011 GGATGTGTTTGAATGGTGCCAG 60.353 50.000 0.00 0.00 0.00 4.85
2755 5299 1.069049 GTGTTTGAATGGTGCCAGCTT 59.931 47.619 0.00 0.00 0.00 3.74
2759 5303 0.895100 TGAATGGTGCCAGCTTGACC 60.895 55.000 0.00 0.00 0.00 4.02
2766 5310 2.094545 GGTGCCAGCTTGACCTAATTTG 60.095 50.000 0.00 0.00 0.00 2.32
2768 5312 2.224992 TGCCAGCTTGACCTAATTTGGA 60.225 45.455 13.16 0.00 0.00 3.53
2787 5331 4.209538 TGGATGGTGAAAATGCCTGATAG 58.790 43.478 0.00 0.00 0.00 2.08
2808 5352 3.450457 AGCTCCAGTTCTCTCTAATGGTG 59.550 47.826 0.00 0.00 32.68 4.17
2813 5357 4.431809 CAGTTCTCTCTAATGGTGCTCTG 58.568 47.826 0.00 0.00 0.00 3.35
2825 5369 1.271379 GGTGCTCTGTTGTGGTATGGT 60.271 52.381 0.00 0.00 0.00 3.55
2826 5370 2.504367 GTGCTCTGTTGTGGTATGGTT 58.496 47.619 0.00 0.00 0.00 3.67
2849 5393 5.237815 TGTAGTGTCAACATAGAGCCAAAG 58.762 41.667 0.00 0.00 0.00 2.77
2926 5470 0.678684 TGCTGTGGCTGATGATGGTG 60.679 55.000 0.00 0.00 39.59 4.17
2966 5510 9.278734 GTTTTCATACTATTTGAAGCTTAGTGC 57.721 33.333 0.00 0.00 43.29 4.40
3027 5571 2.119484 TAGGAGGCACAACCCAACCG 62.119 60.000 0.00 0.00 40.58 4.44
3059 5603 4.521639 TGAGTCATCTTTGCTGCATCTTTT 59.478 37.500 1.84 0.00 0.00 2.27
3069 5613 2.760092 GCTGCATCTTTTGGTTCCCATA 59.240 45.455 0.00 0.00 31.53 2.74
3102 5646 1.973515 AGTGGTGTCAGCAGATTGAGA 59.026 47.619 4.63 0.00 0.00 3.27
3165 5709 6.817765 ATTATTTGTGTGTTCAGAACCGAT 57.182 33.333 10.93 0.00 0.00 4.18
3170 5714 0.389948 GTGTTCAGAACCGATCGCCT 60.390 55.000 10.32 3.26 0.00 5.52
3171 5715 0.389817 TGTTCAGAACCGATCGCCTG 60.390 55.000 10.32 15.49 0.00 4.85
3186 5730 0.962356 GCCTGTCAGTTGGTGGATGG 60.962 60.000 0.00 0.00 0.00 3.51
3213 5760 3.192103 AACTCCCACCCGCCTTGTC 62.192 63.158 0.00 0.00 0.00 3.18
3225 5772 2.343101 CGCCTTGTCGATACTTTGGAA 58.657 47.619 0.00 0.00 0.00 3.53
3226 5773 2.739913 CGCCTTGTCGATACTTTGGAAA 59.260 45.455 0.00 0.00 0.00 3.13
3232 5779 6.582295 CCTTGTCGATACTTTGGAAAATGTTG 59.418 38.462 0.00 0.00 0.00 3.33
3373 6078 9.465985 GAAGTGCAGAGGATAGTTAGTAAATAC 57.534 37.037 0.00 0.00 0.00 1.89
3426 6217 6.056428 ACGGAGTTAACATTCAGAAACAAC 57.944 37.500 8.61 0.00 37.78 3.32
3577 6392 5.244626 CCACATGGAGAATTTTTCAAGGACT 59.755 40.000 0.00 0.00 37.39 3.85
3578 6393 6.154445 CACATGGAGAATTTTTCAAGGACTG 58.846 40.000 0.00 0.00 0.00 3.51
3579 6394 4.853924 TGGAGAATTTTTCAAGGACTGC 57.146 40.909 0.00 0.00 0.00 4.40
3580 6395 4.214310 TGGAGAATTTTTCAAGGACTGCA 58.786 39.130 0.00 0.00 0.00 4.41
3581 6396 4.279169 TGGAGAATTTTTCAAGGACTGCAG 59.721 41.667 13.48 13.48 0.00 4.41
3582 6397 4.321527 GGAGAATTTTTCAAGGACTGCAGG 60.322 45.833 19.93 0.00 0.00 4.85
3583 6398 4.473444 AGAATTTTTCAAGGACTGCAGGA 58.527 39.130 19.93 1.59 0.00 3.86
3584 6399 5.082425 AGAATTTTTCAAGGACTGCAGGAT 58.918 37.500 19.93 0.00 0.00 3.24
3585 6400 5.184671 AGAATTTTTCAAGGACTGCAGGATC 59.815 40.000 19.93 7.26 0.00 3.36
3586 6401 3.795688 TTTTCAAGGACTGCAGGATCT 57.204 42.857 19.93 9.22 0.00 2.75
3587 6402 3.340814 TTTCAAGGACTGCAGGATCTC 57.659 47.619 19.93 6.06 0.00 2.75
3588 6403 2.244486 TCAAGGACTGCAGGATCTCT 57.756 50.000 19.93 4.77 0.00 3.10
3589 6404 2.544721 TCAAGGACTGCAGGATCTCTT 58.455 47.619 19.93 10.52 0.00 2.85
3590 6405 2.499289 TCAAGGACTGCAGGATCTCTTC 59.501 50.000 19.93 4.06 0.00 2.87
3671 6514 5.625426 CGGCATCATATAAGCATCAGTAGGT 60.625 44.000 0.00 0.00 0.00 3.08
3674 6517 7.148340 GGCATCATATAAGCATCAGTAGGTTTC 60.148 40.741 0.00 0.00 0.00 2.78
3689 6532 1.280421 GGTTTCTGAGGGATGTGCTCT 59.720 52.381 0.00 0.00 0.00 4.09
3699 6542 0.718343 GATGTGCTCTGACAAGCGAC 59.282 55.000 0.00 5.71 45.54 5.19
3703 6546 1.664965 GCTCTGACAAGCGACGGTT 60.665 57.895 6.44 6.44 31.56 4.44
3763 6607 1.066502 TCCAGCTGCTAACGTATTGCA 60.067 47.619 8.66 9.17 35.30 4.08
3776 6620 3.005897 ACGTATTGCAGAACTGAGAGTGT 59.994 43.478 5.97 0.00 0.00 3.55
3777 6621 3.610242 CGTATTGCAGAACTGAGAGTGTC 59.390 47.826 5.97 0.00 0.00 3.67
3808 6652 7.981789 TCAGTAACATTCAGAGTGAATATCCAC 59.018 37.037 0.00 0.00 44.60 4.02
3810 6654 5.698741 ACATTCAGAGTGAATATCCACCA 57.301 39.130 0.00 0.00 44.60 4.17
3818 6662 5.249393 AGAGTGAATATCCACCAGTTCAGTT 59.751 40.000 0.00 0.00 37.76 3.16
3819 6663 5.248640 AGTGAATATCCACCAGTTCAGTTG 58.751 41.667 0.00 0.00 37.76 3.16
3873 6717 7.977853 GCATCCTAAGAAATGATGTGTTTCAAT 59.022 33.333 0.00 0.00 38.47 2.57
3885 6729 5.211266 TGTGTTTCAATAAGTTATCGCCG 57.789 39.130 0.00 0.00 0.00 6.46
3901 6746 0.736636 GCCGTGTTTAATAGCACCCC 59.263 55.000 0.00 0.00 32.40 4.95
3904 6749 1.385528 GTGTTTAATAGCACCCCCGG 58.614 55.000 0.00 0.00 0.00 5.73
3905 6750 0.394625 TGTTTAATAGCACCCCCGGC 60.395 55.000 0.00 0.00 0.00 6.13
3906 6751 0.394625 GTTTAATAGCACCCCCGGCA 60.395 55.000 0.00 0.00 0.00 5.69
3907 6752 0.331954 TTTAATAGCACCCCCGGCAA 59.668 50.000 0.00 0.00 0.00 4.52
3908 6753 0.106918 TTAATAGCACCCCCGGCAAG 60.107 55.000 0.00 0.00 0.00 4.01
3909 6754 1.990160 TAATAGCACCCCCGGCAAGG 61.990 60.000 0.00 0.00 40.63 3.61
3914 6759 3.503839 ACCCCCGGCAAGGTGAAA 61.504 61.111 8.14 0.00 38.74 2.69
3915 6760 2.989253 CCCCCGGCAAGGTGAAAC 60.989 66.667 0.00 0.00 38.74 2.78
3916 6761 2.115266 CCCCGGCAAGGTGAAACT 59.885 61.111 0.00 0.00 38.74 2.66
3917 6762 1.530655 CCCCGGCAAGGTGAAACTT 60.531 57.895 0.00 0.00 38.74 2.66
3924 6769 2.781945 CAAGGTGAAACTTGCAGTCC 57.218 50.000 0.00 0.00 41.09 3.85
3925 6770 2.023673 CAAGGTGAAACTTGCAGTCCA 58.976 47.619 0.00 0.00 41.09 4.02
3926 6771 2.426738 CAAGGTGAAACTTGCAGTCCAA 59.573 45.455 0.00 0.00 41.09 3.53
3927 6772 2.733956 AGGTGAAACTTGCAGTCCAAA 58.266 42.857 0.00 0.00 36.74 3.28
3928 6773 2.689983 AGGTGAAACTTGCAGTCCAAAG 59.310 45.455 0.00 0.00 36.74 2.77
3929 6774 2.427095 GGTGAAACTTGCAGTCCAAAGT 59.573 45.455 0.00 0.00 36.74 2.66
3930 6775 3.630312 GGTGAAACTTGCAGTCCAAAGTA 59.370 43.478 0.00 0.00 36.74 2.24
3931 6776 4.097286 GGTGAAACTTGCAGTCCAAAGTAA 59.903 41.667 0.00 0.00 36.74 2.24
3932 6777 5.393678 GGTGAAACTTGCAGTCCAAAGTAAA 60.394 40.000 0.00 0.00 36.74 2.01
3933 6778 6.096695 GTGAAACTTGCAGTCCAAAGTAAAA 58.903 36.000 0.00 0.00 31.94 1.52
3934 6779 6.253512 GTGAAACTTGCAGTCCAAAGTAAAAG 59.746 38.462 0.00 0.00 31.94 2.27
3935 6780 5.914898 AACTTGCAGTCCAAAGTAAAAGT 57.085 34.783 0.00 0.00 31.94 2.66
3936 6781 5.914898 ACTTGCAGTCCAAAGTAAAAGTT 57.085 34.783 0.00 0.00 31.94 2.66
3937 6782 7.399245 AACTTGCAGTCCAAAGTAAAAGTTA 57.601 32.000 0.00 0.00 35.47 2.24
3938 6783 7.582667 ACTTGCAGTCCAAAGTAAAAGTTAT 57.417 32.000 0.00 0.00 31.94 1.89
3939 6784 7.649057 ACTTGCAGTCCAAAGTAAAAGTTATC 58.351 34.615 0.00 0.00 31.94 1.75
3940 6785 6.236017 TGCAGTCCAAAGTAAAAGTTATCG 57.764 37.500 0.00 0.00 0.00 2.92
3941 6786 5.086727 GCAGTCCAAAGTAAAAGTTATCGC 58.913 41.667 0.00 0.00 0.00 4.58
3942 6787 5.628134 CAGTCCAAAGTAAAAGTTATCGCC 58.372 41.667 0.00 0.00 0.00 5.54
3943 6788 4.390909 AGTCCAAAGTAAAAGTTATCGCCG 59.609 41.667 0.00 0.00 0.00 6.46
3944 6789 4.152938 GTCCAAAGTAAAAGTTATCGCCGT 59.847 41.667 0.00 0.00 0.00 5.68
3945 6790 4.152759 TCCAAAGTAAAAGTTATCGCCGTG 59.847 41.667 0.00 0.00 0.00 4.94
3946 6791 4.083696 CCAAAGTAAAAGTTATCGCCGTGT 60.084 41.667 0.00 0.00 0.00 4.49
3947 6792 5.445845 CAAAGTAAAAGTTATCGCCGTGTT 58.554 37.500 0.00 0.00 0.00 3.32
3948 6793 5.678132 AAGTAAAAGTTATCGCCGTGTTT 57.322 34.783 0.00 0.00 0.00 2.83
3949 6794 6.783892 AAGTAAAAGTTATCGCCGTGTTTA 57.216 33.333 0.00 0.00 0.00 2.01
3950 6795 6.783892 AGTAAAAGTTATCGCCGTGTTTAA 57.216 33.333 0.00 0.00 0.00 1.52
3951 6796 7.368480 AGTAAAAGTTATCGCCGTGTTTAAT 57.632 32.000 0.00 0.00 0.00 1.40
3952 6797 8.477984 AGTAAAAGTTATCGCCGTGTTTAATA 57.522 30.769 0.00 0.00 0.00 0.98
3953 6798 8.598075 AGTAAAAGTTATCGCCGTGTTTAATAG 58.402 33.333 0.00 0.00 0.00 1.73
3954 6799 5.399604 AAGTTATCGCCGTGTTTAATAGC 57.600 39.130 0.00 0.00 0.00 2.97
3955 6800 4.435425 AGTTATCGCCGTGTTTAATAGCA 58.565 39.130 0.00 0.00 0.00 3.49
3964 6809 0.935196 GTTTAATAGCACCCTCGGCG 59.065 55.000 0.00 0.00 36.08 6.46
3995 6840 3.708563 TGCAGTCCAAAGTAAAAGTGC 57.291 42.857 0.00 0.00 38.32 4.40
3996 6841 3.287222 TGCAGTCCAAAGTAAAAGTGCT 58.713 40.909 0.00 0.00 38.57 4.40
4002 6847 5.705905 AGTCCAAAGTAAAAGTGCTCATACC 59.294 40.000 0.00 0.00 0.00 2.73
4003 6848 4.693566 TCCAAAGTAAAAGTGCTCATACCG 59.306 41.667 0.00 0.00 0.00 4.02
4019 6864 6.694877 TCATACCGCTCCATAGACATATAC 57.305 41.667 0.00 0.00 0.00 1.47
4020 6865 6.184789 TCATACCGCTCCATAGACATATACA 58.815 40.000 0.00 0.00 0.00 2.29
4021 6866 6.661805 TCATACCGCTCCATAGACATATACAA 59.338 38.462 0.00 0.00 0.00 2.41
4022 6867 7.342026 TCATACCGCTCCATAGACATATACAAT 59.658 37.037 0.00 0.00 0.00 2.71
4023 6868 5.724328 ACCGCTCCATAGACATATACAATG 58.276 41.667 0.00 0.00 0.00 2.82
4024 6869 4.568359 CCGCTCCATAGACATATACAATGC 59.432 45.833 0.00 0.00 0.00 3.56
4025 6870 5.414360 CGCTCCATAGACATATACAATGCT 58.586 41.667 0.00 0.00 0.00 3.79
4026 6871 6.405842 CCGCTCCATAGACATATACAATGCTA 60.406 42.308 0.00 0.00 0.00 3.49
4028 6873 7.708322 CGCTCCATAGACATATACAATGCTAAT 59.292 37.037 0.00 0.00 0.00 1.73
4029 6874 8.824781 GCTCCATAGACATATACAATGCTAATG 58.175 37.037 0.00 0.00 0.00 1.90
4030 6875 9.881649 CTCCATAGACATATACAATGCTAATGT 57.118 33.333 0.00 0.00 33.63 2.71
4054 6905 7.594386 TGTAAATATCGCATGTTGCAATATTGG 59.406 33.333 17.02 1.73 40.81 3.16
4058 6909 3.443329 TCGCATGTTGCAATATTGGTCTT 59.557 39.130 17.02 0.00 45.36 3.01
4065 6916 1.683385 GCAATATTGGTCTTCCCAGGC 59.317 52.381 17.02 0.00 46.31 4.85
4104 6955 0.526739 CAACACAGTCGACGGTGACA 60.527 55.000 41.95 0.00 43.22 3.58
4128 6979 2.990479 GGATGGCTCAAGACCGGT 59.010 61.111 6.92 6.92 0.00 5.28
4131 6982 0.179000 GATGGCTCAAGACCGGTGAT 59.821 55.000 14.63 0.00 0.00 3.06
4137 6988 0.532573 TCAAGACCGGTGATCTCTGC 59.467 55.000 14.63 0.00 0.00 4.26
4155 7006 2.887783 CTGCTACATAGACGAGGATGGT 59.112 50.000 0.00 0.00 0.00 3.55
4251 7104 3.068873 ACAAGCCGATATCTCTCCTGAAC 59.931 47.826 0.34 0.00 0.00 3.18
4252 7105 3.237268 AGCCGATATCTCTCCTGAACT 57.763 47.619 0.34 0.00 0.00 3.01
4253 7106 3.571590 AGCCGATATCTCTCCTGAACTT 58.428 45.455 0.34 0.00 0.00 2.66
4254 7107 4.730966 AGCCGATATCTCTCCTGAACTTA 58.269 43.478 0.34 0.00 0.00 2.24
4255 7108 5.329399 AGCCGATATCTCTCCTGAACTTAT 58.671 41.667 0.34 0.00 0.00 1.73
4257 7110 5.184096 GCCGATATCTCTCCTGAACTTATGA 59.816 44.000 0.34 0.00 0.00 2.15
4258 7111 6.127479 GCCGATATCTCTCCTGAACTTATGAT 60.127 42.308 0.34 0.00 0.00 2.45
4260 7113 7.758980 CCGATATCTCTCCTGAACTTATGATTG 59.241 40.741 0.34 0.00 0.00 2.67
4261 7114 8.303156 CGATATCTCTCCTGAACTTATGATTGT 58.697 37.037 0.34 0.00 0.00 2.71
4262 7115 9.421806 GATATCTCTCCTGAACTTATGATTGTG 57.578 37.037 0.00 0.00 0.00 3.33
4263 7116 6.611613 TCTCTCCTGAACTTATGATTGTGT 57.388 37.500 0.00 0.00 0.00 3.72
4302 7171 4.432980 ACCTGTGTATAAATAGGTGCCC 57.567 45.455 10.43 0.00 41.76 5.36
4305 7174 3.124066 TGTGTATAAATAGGTGCCCCCA 58.876 45.455 0.00 0.00 34.66 4.96
4373 7242 1.326548 CGCTGTTATTCCGTAAGTGCC 59.673 52.381 0.00 0.00 0.00 5.01
4375 7244 2.943033 GCTGTTATTCCGTAAGTGCCAT 59.057 45.455 0.00 0.00 0.00 4.40
4384 7253 3.646162 TCCGTAAGTGCCATCAGGATATT 59.354 43.478 0.00 0.00 36.89 1.28
4385 7254 3.748048 CCGTAAGTGCCATCAGGATATTG 59.252 47.826 0.00 0.00 36.89 1.90
4392 7261 3.074412 GCCATCAGGATATTGGTAACCG 58.926 50.000 0.00 0.00 36.89 4.44
4406 7276 4.571919 TGGTAACCGGTTAATCACTTCTG 58.428 43.478 28.11 0.00 0.00 3.02
4424 7294 7.016563 TCACTTCTGTCCATATAGTTATGCCAT 59.983 37.037 0.00 0.00 34.94 4.40
4425 7295 7.118825 CACTTCTGTCCATATAGTTATGCCATG 59.881 40.741 0.00 0.00 34.94 3.66
4429 7299 7.998383 TCTGTCCATATAGTTATGCCATGTTTT 59.002 33.333 0.00 0.00 34.94 2.43
4469 7339 0.613777 ACAGATTTCCGGACAGGGAC 59.386 55.000 1.83 0.00 41.52 4.46
4493 7363 0.179081 GTCAGTTCCCGATGGCCTAC 60.179 60.000 3.32 0.00 0.00 3.18
4516 7386 1.674221 CGTGAGGAAGAAAGGGAGCAG 60.674 57.143 0.00 0.00 0.00 4.24
4520 7390 0.912486 GGAAGAAAGGGAGCAGCCTA 59.088 55.000 0.00 0.00 36.66 3.93
4526 7396 0.693767 AAGGGAGCAGCCTATCAGCT 60.694 55.000 0.00 0.00 46.45 4.24
4564 7434 1.153066 TGGCGAAACAGGTGAGCAA 60.153 52.632 0.00 0.00 0.00 3.91
4678 7548 2.603021 TCTCTCTGACCTTCTGCTGTT 58.397 47.619 0.00 0.00 0.00 3.16
4732 7603 0.620556 AGGAAGGTGGCATTCGTGAT 59.379 50.000 0.00 0.00 0.00 3.06
4813 7684 3.945285 ACGTCCAAACTCTGAAATGTTGT 59.055 39.130 0.00 0.00 0.00 3.32
4903 7778 8.561738 TGTACAATTATTTCTCTTTCACCCTC 57.438 34.615 0.00 0.00 0.00 4.30
4944 7821 7.836685 TGAGTATCTGTAAACTGAAGGATCTCT 59.163 37.037 0.00 0.00 34.92 3.10
4980 7859 7.324178 AGTACATGAGGTCTCTGTGTAAATTC 58.676 38.462 0.00 6.46 35.17 2.17
4981 7860 6.365970 ACATGAGGTCTCTGTGTAAATTCT 57.634 37.500 0.00 0.00 31.15 2.40
5283 9233 7.858879 ACATACGGACTGAAATTGTAAACAAAC 59.141 33.333 0.00 0.00 39.55 2.93
5288 9238 6.701400 GGACTGAAATTGTAAACAAACATGCT 59.299 34.615 0.00 0.00 39.55 3.79
5360 9315 9.543231 TCTTATATTTATGAACGGAGGGAGTAT 57.457 33.333 0.00 0.00 0.00 2.12
5369 9324 2.445905 ACGGAGGGAGTATCTACCATGA 59.554 50.000 0.00 0.00 36.80 3.07
5445 9400 5.086104 TCTAGAGTGTTAATGGGCTCAAC 57.914 43.478 0.00 0.00 0.00 3.18
5454 9409 1.578215 ATGGGCTCAACTCATGGCCT 61.578 55.000 3.32 0.00 45.25 5.19
5484 9439 9.507329 TTTCAGAAAACTGCTATTCATTACTCT 57.493 29.630 0.00 0.00 0.00 3.24
5494 9449 9.462174 CTGCTATTCATTACTCTCTCTGTAAAG 57.538 37.037 0.00 0.00 34.20 1.85
5507 9462 9.429359 CTCTCTCTGTAAAGAAATAAAAGAGCA 57.571 33.333 0.00 0.00 31.76 4.26
5508 9463 9.209175 TCTCTCTGTAAAGAAATAAAAGAGCAC 57.791 33.333 0.00 0.00 31.76 4.40
5526 9481 9.593134 AAAGAGCACTTAGATCACTAAATAGTG 57.407 33.333 13.24 13.24 43.69 2.74
5545 9500 9.950496 AAATAGTGATCGGAATGCTCTTATATT 57.050 29.630 0.00 0.00 0.00 1.28
5560 9515 8.822805 TGCTCTTATATTTATTTACGGAGGGAT 58.177 33.333 0.00 0.00 0.00 3.85
5561 9516 9.668497 GCTCTTATATTTATTTACGGAGGGATT 57.332 33.333 0.00 0.00 0.00 3.01
5569 9524 9.807921 ATTTATTTACGGAGGGATTACATGATT 57.192 29.630 0.00 0.00 0.00 2.57
5627 9582 7.175347 TGTCTATTCACATGGGAGCTATATC 57.825 40.000 0.00 0.00 0.00 1.63
5634 9589 3.056250 ACATGGGAGCTATATCTCGCTTG 60.056 47.826 23.45 23.45 46.73 4.01
5635 9590 1.895798 TGGGAGCTATATCTCGCTTGG 59.104 52.381 18.11 0.00 43.77 3.61
5653 9608 3.863606 AGCGAGATGGTAGCTCCC 58.136 61.111 0.00 0.00 36.33 4.30
5656 9611 1.811645 GCGAGATGGTAGCTCCCCTC 61.812 65.000 0.00 0.00 34.08 4.30
5663 9618 2.442272 TAGCTCCCCTCGCCTGAC 60.442 66.667 0.00 0.00 0.00 3.51
5705 9660 5.010282 GGTCCATCACTGTAACAATTCCTT 58.990 41.667 0.00 0.00 0.00 3.36
5706 9661 6.177610 GGTCCATCACTGTAACAATTCCTTA 58.822 40.000 0.00 0.00 0.00 2.69
5742 9703 1.770294 TTTCTTTCACCGTTTGGGCT 58.230 45.000 0.00 0.00 40.62 5.19
5749 9710 0.176910 CACCGTTTGGGCTGGTTTTT 59.823 50.000 0.00 0.00 40.62 1.94
5768 9729 7.090808 GGTTTTTCTCTGTTGTTTTCTTGTCT 58.909 34.615 0.00 0.00 0.00 3.41
5769 9730 7.062255 GGTTTTTCTCTGTTGTTTTCTTGTCTG 59.938 37.037 0.00 0.00 0.00 3.51
5770 9731 7.447374 TTTTCTCTGTTGTTTTCTTGTCTGA 57.553 32.000 0.00 0.00 0.00 3.27
5775 9736 8.184192 TCTCTGTTGTTTTCTTGTCTGATTTTC 58.816 33.333 0.00 0.00 0.00 2.29
5776 9737 7.825681 TCTGTTGTTTTCTTGTCTGATTTTCA 58.174 30.769 0.00 0.00 0.00 2.69
5799 9760 4.464069 TGTTTGAGGTTGGGTTTTCTTG 57.536 40.909 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.478699 CAACATGTCTCACAAATCGCAAT 58.521 39.130 0.00 0.00 0.00 3.56
23 24 3.541071 TGCAACATGTCTCACAAATCG 57.459 42.857 0.00 0.00 0.00 3.34
28 29 1.948834 CTGGTTGCAACATGTCTCACA 59.051 47.619 29.55 14.92 0.00 3.58
37 38 6.658849 ACATATATTCCTACTGGTTGCAACA 58.341 36.000 29.55 15.29 34.23 3.33
38 39 7.417612 CAACATATATTCCTACTGGTTGCAAC 58.582 38.462 21.59 21.59 34.23 4.17
39 40 7.566760 CAACATATATTCCTACTGGTTGCAA 57.433 36.000 0.00 0.00 34.23 4.08
45 49 7.231317 ACCATTTGCAACATATATTCCTACTGG 59.769 37.037 0.00 0.00 0.00 4.00
74 78 4.918810 AAGGACCTCACAACATTTTGTC 57.081 40.909 0.00 0.00 44.57 3.18
82 86 6.694877 AGTAAAGAAAAAGGACCTCACAAC 57.305 37.500 0.00 0.00 0.00 3.32
83 87 7.798071 TCTAGTAAAGAAAAAGGACCTCACAA 58.202 34.615 0.00 0.00 0.00 3.33
84 88 7.070821 ACTCTAGTAAAGAAAAAGGACCTCACA 59.929 37.037 0.00 0.00 32.46 3.58
85 89 7.443477 ACTCTAGTAAAGAAAAAGGACCTCAC 58.557 38.462 0.00 0.00 32.46 3.51
86 90 7.613551 ACTCTAGTAAAGAAAAAGGACCTCA 57.386 36.000 0.00 0.00 32.46 3.86
87 91 7.932491 ACAACTCTAGTAAAGAAAAAGGACCTC 59.068 37.037 0.00 0.00 32.46 3.85
88 92 7.715686 CACAACTCTAGTAAAGAAAAAGGACCT 59.284 37.037 0.00 0.00 32.46 3.85
89 93 7.713942 TCACAACTCTAGTAAAGAAAAAGGACC 59.286 37.037 0.00 0.00 32.46 4.46
90 94 8.658499 TCACAACTCTAGTAAAGAAAAAGGAC 57.342 34.615 0.00 0.00 32.46 3.85
91 95 7.931948 CCTCACAACTCTAGTAAAGAAAAAGGA 59.068 37.037 0.00 0.00 32.46 3.36
92 96 7.715686 ACCTCACAACTCTAGTAAAGAAAAAGG 59.284 37.037 0.00 0.00 32.46 3.11
93 97 8.664211 ACCTCACAACTCTAGTAAAGAAAAAG 57.336 34.615 0.00 0.00 32.46 2.27
94 98 7.713942 GGACCTCACAACTCTAGTAAAGAAAAA 59.286 37.037 0.00 0.00 32.46 1.94
95 99 7.147620 TGGACCTCACAACTCTAGTAAAGAAAA 60.148 37.037 0.00 0.00 32.46 2.29
96 100 6.325545 TGGACCTCACAACTCTAGTAAAGAAA 59.674 38.462 0.00 0.00 32.46 2.52
97 101 5.836898 TGGACCTCACAACTCTAGTAAAGAA 59.163 40.000 0.00 0.00 32.46 2.52
98 102 5.391256 TGGACCTCACAACTCTAGTAAAGA 58.609 41.667 0.00 0.00 0.00 2.52
99 103 5.723672 TGGACCTCACAACTCTAGTAAAG 57.276 43.478 0.00 0.00 0.00 1.85
100 104 6.464222 CAATGGACCTCACAACTCTAGTAAA 58.536 40.000 0.00 0.00 0.00 2.01
101 105 5.046591 CCAATGGACCTCACAACTCTAGTAA 60.047 44.000 0.00 0.00 0.00 2.24
102 106 4.466370 CCAATGGACCTCACAACTCTAGTA 59.534 45.833 0.00 0.00 0.00 1.82
103 107 3.261897 CCAATGGACCTCACAACTCTAGT 59.738 47.826 0.00 0.00 0.00 2.57
104 108 3.515502 TCCAATGGACCTCACAACTCTAG 59.484 47.826 0.00 0.00 0.00 2.43
105 109 3.260884 GTCCAATGGACCTCACAACTCTA 59.739 47.826 21.30 0.00 46.19 2.43
106 110 2.039084 GTCCAATGGACCTCACAACTCT 59.961 50.000 21.30 0.00 46.19 3.24
107 111 2.427506 GTCCAATGGACCTCACAACTC 58.572 52.381 21.30 0.00 46.19 3.01
108 112 2.568623 GTCCAATGGACCTCACAACT 57.431 50.000 21.30 0.00 46.19 3.16
134 138 2.749280 TGTAGATGTGTGCTGGACTG 57.251 50.000 0.00 0.00 0.00 3.51
145 149 5.451908 CGTTGAACTTTTGCATGTAGATGT 58.548 37.500 1.37 0.00 31.50 3.06
151 155 3.119316 TCAACCGTTGAACTTTTGCATGT 60.119 39.130 11.63 0.00 36.59 3.21
176 180 6.759272 TGTTAAGTCTAAGTGTCTGCTGATT 58.241 36.000 0.00 0.00 0.00 2.57
177 181 6.346477 TGTTAAGTCTAAGTGTCTGCTGAT 57.654 37.500 0.00 0.00 0.00 2.90
180 184 4.991687 GCTTGTTAAGTCTAAGTGTCTGCT 59.008 41.667 0.00 0.00 0.00 4.24
181 185 4.152580 GGCTTGTTAAGTCTAAGTGTCTGC 59.847 45.833 0.00 0.00 0.00 4.26
182 186 4.691216 GGGCTTGTTAAGTCTAAGTGTCTG 59.309 45.833 0.00 0.00 32.49 3.51
186 190 3.660865 ACGGGCTTGTTAAGTCTAAGTG 58.339 45.455 0.00 0.00 32.49 3.16
191 195 7.933215 AAAATAATACGGGCTTGTTAAGTCT 57.067 32.000 0.00 0.00 32.49 3.24
247 251 9.538508 AGTCAAGATCCTTTGATTTTCTTTTTG 57.461 29.630 1.18 0.00 39.13 2.44
253 257 8.286191 ACCATAGTCAAGATCCTTTGATTTTC 57.714 34.615 1.18 0.00 39.13 2.29
292 296 8.030106 ACACGTGGTTTTATTTCAAGAAAGAAA 58.970 29.630 21.57 10.32 39.01 2.52
293 297 7.540299 ACACGTGGTTTTATTTCAAGAAAGAA 58.460 30.769 21.57 0.19 33.32 2.52
318 322 9.216117 GGAGTAAAGAAAAAGTATTGCAGAGTA 57.784 33.333 0.00 0.00 0.00 2.59
319 323 7.939588 AGGAGTAAAGAAAAAGTATTGCAGAGT 59.060 33.333 0.00 0.00 0.00 3.24
320 324 8.329203 AGGAGTAAAGAAAAAGTATTGCAGAG 57.671 34.615 0.00 0.00 0.00 3.35
321 325 7.390718 GGAGGAGTAAAGAAAAAGTATTGCAGA 59.609 37.037 0.00 0.00 0.00 4.26
322 326 7.174946 TGGAGGAGTAAAGAAAAAGTATTGCAG 59.825 37.037 0.00 0.00 0.00 4.41
324 328 7.448748 TGGAGGAGTAAAGAAAAAGTATTGC 57.551 36.000 0.00 0.00 0.00 3.56
389 408 6.547141 GTGGATGGATATCATTTCCAGACAAA 59.453 38.462 16.52 0.00 46.06 2.83
413 437 2.099592 CGTTATGATGCAGCCATTTGGT 59.900 45.455 0.00 0.00 37.57 3.67
415 439 3.696281 TCGTTATGATGCAGCCATTTG 57.304 42.857 0.00 0.00 0.00 2.32
429 453 5.405269 GCAAGGCTCAAATTGTTTTCGTTAT 59.595 36.000 0.00 0.00 0.00 1.89
452 478 0.750850 TGATAAGGCCGTGTAGGAGC 59.249 55.000 0.00 0.00 45.00 4.70
453 479 3.536956 TTTGATAAGGCCGTGTAGGAG 57.463 47.619 0.00 0.00 45.00 3.69
463 489 8.233190 CCTTTATCAGAATCGATTTGATAAGGC 58.767 37.037 29.80 14.99 41.88 4.35
469 495 9.102757 CTTCTTCCTTTATCAGAATCGATTTGA 57.897 33.333 12.81 16.56 0.00 2.69
480 506 3.652057 TGGGCCTTCTTCCTTTATCAG 57.348 47.619 4.53 0.00 0.00 2.90
508 534 4.766891 TCTTTGAAATGGGAGAGCGAAAAT 59.233 37.500 0.00 0.00 0.00 1.82
512 538 3.634397 ATCTTTGAAATGGGAGAGCGA 57.366 42.857 0.00 0.00 0.00 4.93
513 539 4.708726 AAATCTTTGAAATGGGAGAGCG 57.291 40.909 0.00 0.00 0.00 5.03
514 540 6.924111 TGTAAAATCTTTGAAATGGGAGAGC 58.076 36.000 0.00 0.00 0.00 4.09
515 541 9.762933 TTTTGTAAAATCTTTGAAATGGGAGAG 57.237 29.630 0.00 0.00 0.00 3.20
548 574 4.150897 AGGAAAAGAAAGCCCCAAAAAC 57.849 40.909 0.00 0.00 0.00 2.43
556 582 7.792374 ATTTGAGAAAAAGGAAAAGAAAGCC 57.208 32.000 0.00 0.00 0.00 4.35
562 588 6.918022 AGCACGTATTTGAGAAAAAGGAAAAG 59.082 34.615 0.00 0.00 0.00 2.27
583 1445 2.094417 GCAATCTGAAACTACGGAGCAC 59.906 50.000 0.00 0.00 0.00 4.40
585 1447 2.622436 AGCAATCTGAAACTACGGAGC 58.378 47.619 0.00 0.00 0.00 4.70
589 1451 3.306166 CCGGTAAGCAATCTGAAACTACG 59.694 47.826 0.00 0.00 0.00 3.51
592 1454 3.244422 TGACCGGTAAGCAATCTGAAACT 60.244 43.478 7.34 0.00 0.00 2.66
593 1455 3.071479 TGACCGGTAAGCAATCTGAAAC 58.929 45.455 7.34 0.00 0.00 2.78
594 1456 3.410631 TGACCGGTAAGCAATCTGAAA 57.589 42.857 7.34 0.00 0.00 2.69
595 1457 3.410631 TTGACCGGTAAGCAATCTGAA 57.589 42.857 7.34 0.00 0.00 3.02
596 1458 3.627395 ATTGACCGGTAAGCAATCTGA 57.373 42.857 7.34 0.00 0.00 3.27
597 1459 5.811399 TTAATTGACCGGTAAGCAATCTG 57.189 39.130 17.53 0.00 31.52 2.90
598 1460 7.404671 AAATTAATTGACCGGTAAGCAATCT 57.595 32.000 17.53 11.58 31.52 2.40
650 2950 0.107081 CAACCCCGTTGACTGGTACA 59.893 55.000 0.00 0.00 45.28 2.90
651 2951 0.604511 CCAACCCCGTTGACTGGTAC 60.605 60.000 6.09 0.00 45.28 3.34
652 2952 1.756024 CCAACCCCGTTGACTGGTA 59.244 57.895 6.09 0.00 45.28 3.25
653 2953 2.513895 CCAACCCCGTTGACTGGT 59.486 61.111 6.09 0.00 45.28 4.00
705 3005 4.319177 ACAGGAGTATTTGACTGTTCTGC 58.681 43.478 0.00 0.00 41.03 4.26
710 3010 4.384208 GCCCATACAGGAGTATTTGACTGT 60.384 45.833 0.00 0.00 45.32 3.55
713 3013 3.477530 GGCCCATACAGGAGTATTTGAC 58.522 50.000 0.00 0.00 38.88 3.18
720 3095 2.001269 GGTGGGCCCATACAGGAGT 61.001 63.158 31.45 0.00 41.22 3.85
860 3235 4.697756 TTTCTCCCTGCGGTGGCG 62.698 66.667 0.00 0.00 44.10 5.69
861 3236 2.747855 CTTTCTCCCTGCGGTGGC 60.748 66.667 0.00 0.00 40.52 5.01
862 3237 2.747855 GCTTTCTCCCTGCGGTGG 60.748 66.667 0.00 0.00 0.00 4.61
863 3238 2.032528 TGCTTTCTCCCTGCGGTG 59.967 61.111 0.00 0.00 0.00 4.94
864 3239 2.056906 AACTGCTTTCTCCCTGCGGT 62.057 55.000 0.00 0.00 46.74 5.68
890 3268 1.613785 GGTCTGACCAGTAGTCCGAGT 60.614 57.143 21.70 0.00 45.68 4.18
891 3269 1.096416 GGTCTGACCAGTAGTCCGAG 58.904 60.000 21.70 0.00 45.68 4.63
892 3270 0.323178 GGGTCTGACCAGTAGTCCGA 60.323 60.000 26.94 0.00 45.68 4.55
893 3271 0.611062 TGGGTCTGACCAGTAGTCCG 60.611 60.000 26.94 0.00 45.68 4.79
894 3272 3.376082 TGGGTCTGACCAGTAGTCC 57.624 57.895 26.94 9.33 45.68 3.85
933 3325 0.179121 TGTCGCTGTGTGTCTTTCGT 60.179 50.000 0.00 0.00 0.00 3.85
939 3331 1.887242 TTGGCTGTCGCTGTGTGTC 60.887 57.895 0.00 0.00 36.09 3.67
988 3380 0.602638 GTGGCCATCGCAATCGGATA 60.603 55.000 9.72 0.00 36.38 2.59
1533 3931 1.101635 TGGCGGAGATCTCGTCGATT 61.102 55.000 21.08 0.00 34.67 3.34
1939 4337 3.604667 CTTGCGCAGGTTGCCCAA 61.605 61.111 11.31 1.74 41.12 4.12
2261 4664 5.354513 TGAAAACGGCGGAATAATAATGTGA 59.645 36.000 13.24 0.00 0.00 3.58
2271 4674 1.201414 GGAACATGAAAACGGCGGAAT 59.799 47.619 13.24 0.00 0.00 3.01
2272 4675 0.594110 GGAACATGAAAACGGCGGAA 59.406 50.000 13.24 0.00 0.00 4.30
2273 4676 1.570347 CGGAACATGAAAACGGCGGA 61.570 55.000 13.24 0.00 0.00 5.54
2437 4978 0.589223 TTTTAGCTTTGACGGTGCCG 59.411 50.000 9.29 9.29 46.03 5.69
2457 4998 6.087522 CCGAATCGTTTTGTTAATTTAGGCA 58.912 36.000 0.82 0.00 0.00 4.75
2474 5016 7.373441 GCATAATTTAGAACTCAAACCGAATCG 59.627 37.037 0.00 0.00 0.00 3.34
2497 5039 5.226194 TGCCCTAAACAAAATGAAAGCAT 57.774 34.783 0.00 0.00 35.92 3.79
2516 5058 0.984109 CGAACAAAATGTCGCATGCC 59.016 50.000 13.15 0.00 0.00 4.40
2517 5059 1.962412 TCGAACAAAATGTCGCATGC 58.038 45.000 7.91 7.91 0.00 4.06
2520 5062 3.723542 CGCTAATCGAACAAAATGTCGCA 60.724 43.478 0.00 0.00 41.67 5.10
2550 5092 6.151648 CCAGAGAGACATTTTAAATTCCAGCA 59.848 38.462 0.00 0.00 0.00 4.41
2582 5124 6.538742 ACATGTTTAGTACATTGAGGATTCGG 59.461 38.462 0.00 0.00 45.19 4.30
2635 5177 0.616395 TGCGGTCTGGACTCCCAATA 60.616 55.000 0.67 0.00 42.98 1.90
2636 5178 1.274703 ATGCGGTCTGGACTCCCAAT 61.275 55.000 0.67 0.00 42.98 3.16
2650 5192 3.190327 TGTCTGTCAAAAATACCATGCGG 59.810 43.478 0.00 0.00 38.77 5.69
2652 5194 5.527951 TGTTGTCTGTCAAAAATACCATGC 58.472 37.500 0.00 0.00 37.81 4.06
2656 5198 5.242838 TCCCATGTTGTCTGTCAAAAATACC 59.757 40.000 0.00 0.00 37.81 2.73
2658 5200 8.642935 TTATCCCATGTTGTCTGTCAAAAATA 57.357 30.769 0.00 0.00 37.81 1.40
2667 5209 7.630242 ACTACAAATTATCCCATGTTGTCTG 57.370 36.000 0.00 0.00 34.43 3.51
2672 5214 8.113462 ACCAACTACTACAAATTATCCCATGTT 58.887 33.333 0.00 0.00 0.00 2.71
2684 5226 8.779303 CACATGATTGTTACCAACTACTACAAA 58.221 33.333 0.00 0.00 32.34 2.83
2707 5249 3.683365 ACTACTCACACATGATGCACA 57.317 42.857 0.00 0.00 33.22 4.57
2733 5277 1.001181 GCTGGCACCATTCAAACACAT 59.999 47.619 0.00 0.00 0.00 3.21
2746 5290 2.094545 CCAAATTAGGTCAAGCTGGCAC 60.095 50.000 0.00 0.00 0.00 5.01
2750 5294 4.019174 ACCATCCAAATTAGGTCAAGCTG 58.981 43.478 0.00 0.00 0.00 4.24
2751 5295 4.019174 CACCATCCAAATTAGGTCAAGCT 58.981 43.478 0.00 0.00 30.44 3.74
2752 5296 4.016444 TCACCATCCAAATTAGGTCAAGC 58.984 43.478 0.00 0.00 30.44 4.01
2755 5299 6.574073 GCATTTTCACCATCCAAATTAGGTCA 60.574 38.462 0.00 0.00 30.44 4.02
2759 5303 5.813672 CAGGCATTTTCACCATCCAAATTAG 59.186 40.000 0.00 0.00 0.00 1.73
2766 5310 3.005155 GCTATCAGGCATTTTCACCATCC 59.995 47.826 0.00 0.00 0.00 3.51
2768 5312 3.887716 GAGCTATCAGGCATTTTCACCAT 59.112 43.478 0.00 0.00 34.17 3.55
2787 5331 3.791245 CACCATTAGAGAGAACTGGAGC 58.209 50.000 0.00 0.00 0.00 4.70
2808 5352 2.504367 ACAACCATACCACAACAGAGC 58.496 47.619 0.00 0.00 0.00 4.09
2813 5357 4.382291 TGACACTACAACCATACCACAAC 58.618 43.478 0.00 0.00 0.00 3.32
2825 5369 4.882842 TGGCTCTATGTTGACACTACAA 57.117 40.909 0.00 0.00 0.00 2.41
2826 5370 4.882842 TTGGCTCTATGTTGACACTACA 57.117 40.909 0.00 0.00 0.00 2.74
2849 5393 3.726235 GCAAAAGAAAAGACGAACAGAGC 59.274 43.478 0.00 0.00 0.00 4.09
2926 5470 7.924103 AGTATGAAAACGGAAAACAAATGAC 57.076 32.000 0.00 0.00 0.00 3.06
2939 5483 9.478019 CACTAAGCTTCAAATAGTATGAAAACG 57.522 33.333 0.00 0.00 36.43 3.60
3027 5571 0.908198 AAGATGACTCAGACCTGGGC 59.092 55.000 0.00 0.00 33.38 5.36
3036 5580 3.345508 AGATGCAGCAAAGATGACTCA 57.654 42.857 4.07 0.00 0.00 3.41
3069 5613 6.156256 TGCTGACACCACTATTATTTAGAGGT 59.844 38.462 0.00 0.00 38.71 3.85
3102 5646 4.989279 ATTCTGGAATTTAAGCATGCGT 57.011 36.364 13.01 12.35 0.00 5.24
3165 5709 1.480212 ATCCACCAACTGACAGGCGA 61.480 55.000 7.51 0.00 0.00 5.54
3170 5714 0.850100 AACCCATCCACCAACTGACA 59.150 50.000 0.00 0.00 0.00 3.58
3171 5715 1.202879 TGAACCCATCCACCAACTGAC 60.203 52.381 0.00 0.00 0.00 3.51
3186 5730 0.250770 GGGTGGGAGTTCAGTGAACC 60.251 60.000 28.29 20.08 42.85 3.62
3213 5760 6.585702 TGCAATCAACATTTTCCAAAGTATCG 59.414 34.615 0.00 0.00 0.00 2.92
3257 5804 5.512942 TTCATGTAGTGAATTCCAGGGAA 57.487 39.130 2.75 2.75 41.79 3.97
3373 6078 7.772332 AATATAAGACGTTTTGAGGCAGTAG 57.228 36.000 0.83 0.00 0.00 2.57
3378 6083 6.033966 CCCAAAATATAAGACGTTTTGAGGC 58.966 40.000 0.83 0.00 42.47 4.70
3491 6282 7.713764 AATTTCTTCTGAAACCGAATTTTGG 57.286 32.000 0.75 0.75 43.90 3.28
3671 6514 2.027745 GTCAGAGCACATCCCTCAGAAA 60.028 50.000 0.00 0.00 0.00 2.52
3674 6517 0.900421 TGTCAGAGCACATCCCTCAG 59.100 55.000 0.00 0.00 0.00 3.35
3689 6532 2.029739 TCTATTGAACCGTCGCTTGTCA 60.030 45.455 0.00 0.00 0.00 3.58
3732 6576 0.250038 GCAGCTGGACAGTGTGAAGA 60.250 55.000 17.12 0.00 0.00 2.87
3763 6607 3.763360 CTGATCCTGACACTCTCAGTTCT 59.237 47.826 0.00 0.00 44.69 3.01
3776 6620 5.716703 TCACTCTGAATGTTACTGATCCTGA 59.283 40.000 0.00 0.00 0.00 3.86
3777 6621 5.970592 TCACTCTGAATGTTACTGATCCTG 58.029 41.667 0.00 0.00 0.00 3.86
3785 6629 7.047891 TGGTGGATATTCACTCTGAATGTTAC 58.952 38.462 13.92 5.19 45.77 2.50
3786 6630 7.092891 ACTGGTGGATATTCACTCTGAATGTTA 60.093 37.037 13.92 0.00 45.77 2.41
3808 6652 5.431765 ACCATATTCTAGCAACTGAACTGG 58.568 41.667 0.00 0.00 35.85 4.00
3810 6654 6.098982 AGCTACCATATTCTAGCAACTGAACT 59.901 38.462 9.93 0.00 38.29 3.01
3818 6662 4.344968 TGCAAGAGCTACCATATTCTAGCA 59.655 41.667 9.93 0.00 42.74 3.49
3819 6663 4.887748 TGCAAGAGCTACCATATTCTAGC 58.112 43.478 0.00 1.50 42.74 3.42
3873 6717 6.019640 GTGCTATTAAACACGGCGATAACTTA 60.020 38.462 16.62 0.68 0.00 2.24
3885 6729 1.385528 CCGGGGGTGCTATTAAACAC 58.614 55.000 0.00 0.00 36.03 3.32
3915 6760 6.797033 CGATAACTTTTACTTTGGACTGCAAG 59.203 38.462 0.00 0.00 42.29 4.01
3916 6761 6.664515 CGATAACTTTTACTTTGGACTGCAA 58.335 36.000 0.00 0.00 0.00 4.08
3917 6762 5.334569 GCGATAACTTTTACTTTGGACTGCA 60.335 40.000 0.00 0.00 0.00 4.41
3918 6763 5.086727 GCGATAACTTTTACTTTGGACTGC 58.913 41.667 0.00 0.00 0.00 4.40
3919 6764 5.628134 GGCGATAACTTTTACTTTGGACTG 58.372 41.667 0.00 0.00 0.00 3.51
3920 6765 4.390909 CGGCGATAACTTTTACTTTGGACT 59.609 41.667 0.00 0.00 0.00 3.85
3921 6766 4.152938 ACGGCGATAACTTTTACTTTGGAC 59.847 41.667 16.62 0.00 0.00 4.02
3922 6767 4.152759 CACGGCGATAACTTTTACTTTGGA 59.847 41.667 16.62 0.00 0.00 3.53
3923 6768 4.083696 ACACGGCGATAACTTTTACTTTGG 60.084 41.667 16.62 0.00 0.00 3.28
3924 6769 5.025986 ACACGGCGATAACTTTTACTTTG 57.974 39.130 16.62 0.00 0.00 2.77
3925 6770 5.678132 AACACGGCGATAACTTTTACTTT 57.322 34.783 16.62 0.00 0.00 2.66
3926 6771 5.678132 AAACACGGCGATAACTTTTACTT 57.322 34.783 16.62 0.00 0.00 2.24
3927 6772 6.783892 TTAAACACGGCGATAACTTTTACT 57.216 33.333 16.62 0.00 0.00 2.24
3928 6773 7.371615 GCTATTAAACACGGCGATAACTTTTAC 59.628 37.037 16.62 0.00 0.00 2.01
3929 6774 7.064371 TGCTATTAAACACGGCGATAACTTTTA 59.936 33.333 16.62 4.74 0.00 1.52
3930 6775 6.128227 TGCTATTAAACACGGCGATAACTTTT 60.128 34.615 16.62 5.71 0.00 2.27
3931 6776 5.352016 TGCTATTAAACACGGCGATAACTTT 59.648 36.000 16.62 5.64 0.00 2.66
3932 6777 4.871557 TGCTATTAAACACGGCGATAACTT 59.128 37.500 16.62 1.70 0.00 2.66
3933 6778 4.269363 GTGCTATTAAACACGGCGATAACT 59.731 41.667 16.62 0.00 0.00 2.24
3934 6779 4.511734 GTGCTATTAAACACGGCGATAAC 58.488 43.478 16.62 0.00 0.00 1.89
3935 6780 3.556775 GGTGCTATTAAACACGGCGATAA 59.443 43.478 16.62 7.75 37.68 1.75
3936 6781 3.125316 GGTGCTATTAAACACGGCGATA 58.875 45.455 16.62 0.00 37.68 2.92
3937 6782 1.937899 GGTGCTATTAAACACGGCGAT 59.062 47.619 16.62 0.00 37.68 4.58
3938 6783 1.361793 GGTGCTATTAAACACGGCGA 58.638 50.000 16.62 0.00 37.68 5.54
3939 6784 0.375803 GGGTGCTATTAAACACGGCG 59.624 55.000 4.80 4.80 37.68 6.46
3940 6785 1.669265 GAGGGTGCTATTAAACACGGC 59.331 52.381 0.00 0.00 37.68 5.68
3941 6786 1.931172 CGAGGGTGCTATTAAACACGG 59.069 52.381 0.00 0.00 37.68 4.94
3942 6787 1.931172 CCGAGGGTGCTATTAAACACG 59.069 52.381 0.00 0.00 37.68 4.49
3943 6788 1.669265 GCCGAGGGTGCTATTAAACAC 59.331 52.381 0.00 0.00 36.03 3.32
3944 6789 1.741055 CGCCGAGGGTGCTATTAAACA 60.741 52.381 0.00 0.00 0.00 2.83
3945 6790 0.935196 CGCCGAGGGTGCTATTAAAC 59.065 55.000 0.00 0.00 0.00 2.01
3946 6791 0.825410 TCGCCGAGGGTGCTATTAAA 59.175 50.000 0.00 0.00 32.51 1.52
3947 6792 0.387929 CTCGCCGAGGGTGCTATTAA 59.612 55.000 6.13 0.00 32.51 1.40
3948 6793 1.461091 CCTCGCCGAGGGTGCTATTA 61.461 60.000 25.49 0.00 45.43 0.98
3949 6794 2.797278 CCTCGCCGAGGGTGCTATT 61.797 63.158 25.49 0.00 45.43 1.73
3950 6795 3.227276 CCTCGCCGAGGGTGCTAT 61.227 66.667 25.49 0.00 45.43 2.97
3995 6840 5.843673 ATATGTCTATGGAGCGGTATGAG 57.156 43.478 0.00 0.00 0.00 2.90
3996 6841 6.184789 TGTATATGTCTATGGAGCGGTATGA 58.815 40.000 0.00 0.00 0.00 2.15
4002 6847 5.414360 AGCATTGTATATGTCTATGGAGCG 58.586 41.667 0.00 0.00 0.00 5.03
4003 6848 8.824781 CATTAGCATTGTATATGTCTATGGAGC 58.175 37.037 0.00 0.00 0.00 4.70
4019 6864 8.632551 CAACATGCGATATTTACATTAGCATTG 58.367 33.333 0.00 0.00 41.21 2.82
4020 6865 7.326789 GCAACATGCGATATTTACATTAGCATT 59.673 33.333 0.00 0.00 41.21 3.56
4021 6866 6.803320 GCAACATGCGATATTTACATTAGCAT 59.197 34.615 0.00 0.00 43.52 3.79
4022 6867 6.142139 GCAACATGCGATATTTACATTAGCA 58.858 36.000 0.00 0.00 37.54 3.49
4023 6868 6.602564 GCAACATGCGATATTTACATTAGC 57.397 37.500 0.00 0.00 31.71 3.09
4038 6889 4.114794 GGAAGACCAATATTGCAACATGC 58.885 43.478 10.11 0.00 38.95 4.06
4054 6905 2.038557 TGTTGAAGTAGCCTGGGAAGAC 59.961 50.000 0.00 0.00 0.00 3.01
4058 6909 1.771854 TGTTGTTGAAGTAGCCTGGGA 59.228 47.619 0.00 0.00 0.00 4.37
4065 6916 3.466836 TGCCTCTGTGTTGTTGAAGTAG 58.533 45.455 0.00 0.00 0.00 2.57
4104 6955 3.000819 TTGAGCCATCCGTCGGGT 61.001 61.111 12.29 0.00 36.82 5.28
4110 6961 2.202932 CCGGTCTTGAGCCATCCG 60.203 66.667 0.00 0.00 40.72 4.18
4128 6979 4.068599 CCTCGTCTATGTAGCAGAGATCA 58.931 47.826 0.00 0.00 34.20 2.92
4131 6982 3.840124 TCCTCGTCTATGTAGCAGAGA 57.160 47.619 10.85 0.00 32.31 3.10
4137 6988 6.882140 AGAGATAACCATCCTCGTCTATGTAG 59.118 42.308 0.00 0.00 0.00 2.74
4155 7006 1.475280 CGGTCCACCACGAAGAGATAA 59.525 52.381 0.00 0.00 35.14 1.75
4232 7085 3.237268 AGTTCAGGAGAGATATCGGCT 57.763 47.619 0.00 0.00 0.00 5.52
4245 7098 5.392380 GCCAAGACACAATCATAAGTTCAGG 60.392 44.000 0.00 0.00 0.00 3.86
4251 7104 5.587443 TCAGATGCCAAGACACAATCATAAG 59.413 40.000 0.00 0.00 0.00 1.73
4252 7105 5.499313 TCAGATGCCAAGACACAATCATAA 58.501 37.500 0.00 0.00 0.00 1.90
4253 7106 5.101648 TCAGATGCCAAGACACAATCATA 57.898 39.130 0.00 0.00 0.00 2.15
4254 7107 3.959293 TCAGATGCCAAGACACAATCAT 58.041 40.909 0.00 0.00 0.00 2.45
4255 7108 3.421919 TCAGATGCCAAGACACAATCA 57.578 42.857 0.00 0.00 0.00 2.57
4257 7110 4.084287 ACATTCAGATGCCAAGACACAAT 58.916 39.130 0.00 0.00 36.72 2.71
4258 7111 3.489355 ACATTCAGATGCCAAGACACAA 58.511 40.909 0.00 0.00 36.72 3.33
4260 7113 4.142600 GGTTACATTCAGATGCCAAGACAC 60.143 45.833 0.00 0.00 36.72 3.67
4261 7114 4.009675 GGTTACATTCAGATGCCAAGACA 58.990 43.478 0.00 0.00 36.72 3.41
4262 7115 4.095483 CAGGTTACATTCAGATGCCAAGAC 59.905 45.833 0.00 0.00 36.72 3.01
4263 7116 4.263462 ACAGGTTACATTCAGATGCCAAGA 60.263 41.667 0.00 0.00 36.72 3.02
4302 7171 0.676151 GAGCTTCCAACTCTGCTGGG 60.676 60.000 0.00 0.00 35.76 4.45
4305 7174 1.977129 AGAAGAGCTTCCAACTCTGCT 59.023 47.619 6.61 0.00 44.07 4.24
4373 7242 4.351874 ACCGGTTACCAATATCCTGATG 57.648 45.455 0.00 0.00 0.00 3.07
4375 7244 5.954153 TTAACCGGTTACCAATATCCTGA 57.046 39.130 26.53 4.70 0.00 3.86
4384 7253 4.040706 ACAGAAGTGATTAACCGGTTACCA 59.959 41.667 26.53 22.26 0.00 3.25
4385 7254 4.572909 ACAGAAGTGATTAACCGGTTACC 58.427 43.478 26.53 20.10 0.00 2.85
4429 7299 6.271391 TCTGTAGAAAGGACCAGACCATTAAA 59.729 38.462 0.00 0.00 0.00 1.52
4434 7304 3.254093 TCTGTAGAAAGGACCAGACCA 57.746 47.619 0.00 0.00 0.00 4.02
4435 7305 4.828072 AATCTGTAGAAAGGACCAGACC 57.172 45.455 0.00 0.00 36.82 3.85
4437 7307 4.081642 CGGAAATCTGTAGAAAGGACCAGA 60.082 45.833 0.00 0.00 38.24 3.86
4438 7308 4.184629 CGGAAATCTGTAGAAAGGACCAG 58.815 47.826 0.00 0.00 0.00 4.00
4440 7310 3.197116 TCCGGAAATCTGTAGAAAGGACC 59.803 47.826 0.00 0.00 0.00 4.46
4442 7312 3.835978 TGTCCGGAAATCTGTAGAAAGGA 59.164 43.478 5.23 0.00 0.00 3.36
4443 7313 4.184629 CTGTCCGGAAATCTGTAGAAAGG 58.815 47.826 5.23 0.00 0.00 3.11
4450 7320 0.613777 GTCCCTGTCCGGAAATCTGT 59.386 55.000 5.23 0.00 32.34 3.41
4493 7363 0.601558 TCCCTTTCTTCCTCACGACG 59.398 55.000 0.00 0.00 0.00 5.12
4516 7386 0.392336 CACCTCCTGAGCTGATAGGC 59.608 60.000 0.00 0.00 34.00 3.93
4520 7390 1.129917 CCATCACCTCCTGAGCTGAT 58.870 55.000 0.00 0.14 34.89 2.90
4526 7396 2.038952 CACAAACTCCATCACCTCCTGA 59.961 50.000 0.00 0.00 0.00 3.86
4577 7447 7.411804 GGTTCATTTTGTTGGATTTTATCTGCG 60.412 37.037 0.00 0.00 0.00 5.18
4579 7449 8.830201 TGGTTCATTTTGTTGGATTTTATCTG 57.170 30.769 0.00 0.00 0.00 2.90
4647 7517 4.706035 AGGTCAGAGAGATTGCATGAATC 58.294 43.478 0.00 3.39 40.92 2.52
4732 7603 0.394216 CGCATTCTTGGGGATGTCCA 60.394 55.000 0.86 0.00 37.91 4.02
4813 7684 1.883678 TGCAGAGGAGGATGGATCAA 58.116 50.000 0.00 0.00 0.00 2.57
4944 7821 5.656859 AGACCTCATGTACTACATAACTGCA 59.343 40.000 1.19 0.00 36.53 4.41
4980 7859 4.980434 CGTTCCCGTATGTGGTATAGAAAG 59.020 45.833 0.00 0.00 0.00 2.62
4981 7860 4.202141 CCGTTCCCGTATGTGGTATAGAAA 60.202 45.833 0.00 0.00 0.00 2.52
4989 7868 1.143183 CTCCCGTTCCCGTATGTGG 59.857 63.158 0.00 0.00 0.00 4.17
5072 7953 0.387112 GCACTTGCAGCATTTACGCA 60.387 50.000 0.00 0.00 41.59 5.24
5100 7981 6.040247 CGTCCAAATATGTACTCTGCTGTAA 58.960 40.000 0.00 0.00 0.00 2.41
5213 9161 9.284594 CGAAAACGTTTTATATTTGTGATCCAT 57.715 29.630 25.26 0.00 0.00 3.41
5258 9207 7.858382 TGTTTGTTTACAATTTCAGTCCGTATG 59.142 33.333 0.00 0.00 35.55 2.39
5262 9211 6.345723 GCATGTTTGTTTACAATTTCAGTCCG 60.346 38.462 0.00 0.00 35.55 4.79
5279 9229 5.267009 TGTACACACGTTTAAGCATGTTTG 58.733 37.500 4.89 0.00 0.00 2.93
5283 9233 6.159419 TGTATGTACACACGTTTAAGCATG 57.841 37.500 0.00 0.00 0.00 4.06
5343 9298 4.105217 TGGTAGATACTCCCTCCGTTCATA 59.895 45.833 0.00 0.00 0.00 2.15
5360 9315 8.087750 GGATTTGAATTTTTGTGTCATGGTAGA 58.912 33.333 0.00 0.00 0.00 2.59
5369 9324 7.555087 TCAAGTCTGGATTTGAATTTTTGTGT 58.445 30.769 6.15 0.00 34.72 3.72
5445 9400 6.928520 AGTTTTCTGAAAATTAGGCCATGAG 58.071 36.000 17.63 0.00 32.22 2.90
5484 9439 9.561069 AAGTGCTCTTTTATTTCTTTACAGAGA 57.439 29.630 0.00 0.00 0.00 3.10
5523 9478 9.950496 AATAAATATAAGAGCATTCCGATCACT 57.050 29.630 0.00 0.00 30.15 3.41
5528 9483 9.146984 CCGTAAATAAATATAAGAGCATTCCGA 57.853 33.333 0.00 0.00 0.00 4.55
5545 9500 9.635404 AAAATCATGTAATCCCTCCGTAAATAA 57.365 29.630 0.00 0.00 0.00 1.40
5547 9502 9.284968 CTAAAATCATGTAATCCCTCCGTAAAT 57.715 33.333 0.00 0.00 0.00 1.40
5552 9507 6.055588 ACACTAAAATCATGTAATCCCTCCG 58.944 40.000 0.00 0.00 0.00 4.63
5569 9524 7.086230 TGGAGCGTTAAAGAAAAACACTAAA 57.914 32.000 0.00 0.00 0.00 1.85
5580 9535 0.319083 TTCGGCTGGAGCGTTAAAGA 59.681 50.000 0.00 0.00 43.26 2.52
5587 9542 2.587194 CATCCTTCGGCTGGAGCG 60.587 66.667 0.00 0.00 43.26 5.03
5607 9562 5.163509 GCGAGATATAGCTCCCATGTGAATA 60.164 44.000 12.27 0.00 0.00 1.75
5614 9569 2.499289 CCAAGCGAGATATAGCTCCCAT 59.501 50.000 12.27 0.00 43.78 4.00
5676 9631 0.546507 TACAGTGATGGACCAGCCCA 60.547 55.000 7.40 0.00 41.05 5.36
5678 9633 1.003118 TGTTACAGTGATGGACCAGCC 59.997 52.381 7.40 0.00 37.10 4.85
5681 9636 4.042809 AGGAATTGTTACAGTGATGGACCA 59.957 41.667 0.00 0.00 0.00 4.02
5722 9680 2.035832 CAGCCCAAACGGTGAAAGAAAT 59.964 45.455 0.00 0.00 0.00 2.17
5733 9694 1.681264 AGAGAAAAACCAGCCCAAACG 59.319 47.619 0.00 0.00 0.00 3.60
5742 9703 6.754193 ACAAGAAAACAACAGAGAAAAACCA 58.246 32.000 0.00 0.00 0.00 3.67
5749 9710 7.630242 AAATCAGACAAGAAAACAACAGAGA 57.370 32.000 0.00 0.00 0.00 3.10
5768 9729 5.130145 ACCCAACCTCAAACAATGAAAATCA 59.870 36.000 0.00 0.00 37.67 2.57
5769 9730 5.610398 ACCCAACCTCAAACAATGAAAATC 58.390 37.500 0.00 0.00 37.67 2.17
5770 9731 5.628797 ACCCAACCTCAAACAATGAAAAT 57.371 34.783 0.00 0.00 37.67 1.82
5775 9736 5.022282 AGAAAACCCAACCTCAAACAATG 57.978 39.130 0.00 0.00 0.00 2.82
5776 9737 5.045942 ACAAGAAAACCCAACCTCAAACAAT 60.046 36.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.