Multiple sequence alignment - TraesCS5A01G496400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G496400 chr5A 100.000 3752 0 0 1 3752 663840608 663844359 0.000000e+00 6929.0
1 TraesCS5A01G496400 chr5A 82.697 1624 236 27 994 2607 569068239 569066651 0.000000e+00 1400.0
2 TraesCS5A01G496400 chr5A 78.519 1620 285 54 1000 2589 559040332 559038746 0.000000e+00 1005.0
3 TraesCS5A01G496400 chr5A 85.890 163 16 3 3214 3376 574194708 574194553 2.320000e-37 167.0
4 TraesCS5A01G496400 chr5A 85.906 149 10 8 3217 3365 592618797 592618934 8.400000e-32 148.0
5 TraesCS5A01G496400 chr4D 92.970 2916 129 28 264 3143 483950546 483953421 0.000000e+00 4180.0
6 TraesCS5A01G496400 chr4D 93.056 72 5 0 3534 3605 483953754 483953825 5.130000e-19 106.0
7 TraesCS5A01G496400 chr4B 89.763 2706 129 48 481 3143 614719289 614721889 0.000000e+00 3326.0
8 TraesCS5A01G496400 chr4B 91.093 247 21 1 3367 3612 614722167 614722413 2.160000e-87 333.0
9 TraesCS5A01G496400 chr2D 83.171 1646 241 22 1001 2631 643071129 643069505 0.000000e+00 1472.0
10 TraesCS5A01G496400 chr2D 82.803 1634 251 19 1001 2622 642965524 642967139 0.000000e+00 1434.0
11 TraesCS5A01G496400 chr2D 83.544 158 17 5 3214 3365 190024106 190023952 5.050000e-29 139.0
12 TraesCS5A01G496400 chr5D 83.200 1625 243 20 1001 2610 449688790 449687181 0.000000e+00 1461.0
13 TraesCS5A01G496400 chr5D 78.413 1626 290 51 1000 2596 442894533 442892940 0.000000e+00 1002.0
14 TraesCS5A01G496400 chr5D 84.791 263 38 2 5 265 97060891 97060629 2.870000e-66 263.0
15 TraesCS5A01G496400 chr5D 84.270 267 40 2 3 268 462354561 462354296 3.720000e-65 259.0
16 TraesCS5A01G496400 chr5D 94.444 90 5 0 3607 3696 28640866 28640955 5.050000e-29 139.0
17 TraesCS5A01G496400 chr2A 82.773 1637 246 24 1001 2622 767952043 767950428 0.000000e+00 1428.0
18 TraesCS5A01G496400 chr2A 80.000 95 19 0 359 453 540403550 540403644 1.870000e-08 71.3
19 TraesCS5A01G496400 chrUn 82.460 1642 259 16 1001 2631 31607124 31605501 0.000000e+00 1410.0
20 TraesCS5A01G496400 chrUn 86.256 422 58 0 2201 2622 31587366 31587787 3.420000e-125 459.0
21 TraesCS5A01G496400 chrUn 93.478 92 6 0 3605 3696 22530300 22530391 1.820000e-28 137.0
22 TraesCS5A01G496400 chr5B 83.048 1404 219 13 1238 2630 549671417 549670022 0.000000e+00 1256.0
23 TraesCS5A01G496400 chr5B 84.270 267 40 2 3 268 568551438 568551173 3.720000e-65 259.0
24 TraesCS5A01G496400 chr6D 85.171 263 35 4 3 265 72041526 72041268 2.220000e-67 267.0
25 TraesCS5A01G496400 chr6D 85.714 168 19 4 3214 3376 388209772 388209939 4.980000e-39 172.0
26 TraesCS5A01G496400 chr6B 83.650 263 39 3 3 265 146652045 146651787 1.040000e-60 244.0
27 TraesCS5A01G496400 chr7B 82.890 263 40 5 5 264 634161077 634161337 8.100000e-57 231.0
28 TraesCS5A01G496400 chr7B 82.443 262 44 2 5 265 371744761 371745021 1.050000e-55 228.0
29 TraesCS5A01G496400 chr7D 82.443 262 44 2 5 265 376609417 376609677 1.050000e-55 228.0
30 TraesCS5A01G496400 chr7D 83.735 166 19 5 3214 3373 575899018 575899181 2.330000e-32 150.0
31 TraesCS5A01G496400 chr7D 92.473 93 7 0 3602 3694 526495536 526495628 2.350000e-27 134.0
32 TraesCS5A01G496400 chr3D 82.625 259 44 1 10 267 597415925 597416183 1.050000e-55 228.0
33 TraesCS5A01G496400 chr3D 89.423 104 8 3 3595 3698 194928203 194928303 1.090000e-25 128.0
34 TraesCS5A01G496400 chr3B 85.542 166 18 4 3214 3374 107966260 107966096 6.450000e-38 169.0
35 TraesCS5A01G496400 chr3B 93.478 92 6 0 3607 3698 55098859 55098950 1.820000e-28 137.0
36 TraesCS5A01G496400 chr1B 84.375 160 21 4 3214 3369 392530751 392530592 1.800000e-33 154.0
37 TraesCS5A01G496400 chr1B 94.737 95 4 1 3602 3696 44495356 44495449 3.020000e-31 147.0
38 TraesCS5A01G496400 chr2B 84.713 157 19 5 3214 3366 732040990 732041145 6.490000e-33 152.0
39 TraesCS5A01G496400 chr2B 86.087 115 13 1 3586 3697 745781603 745781717 1.830000e-23 121.0
40 TraesCS5A01G496400 chr4A 83.648 159 22 2 3214 3368 152648682 152648524 3.020000e-31 147.0
41 TraesCS5A01G496400 chr4A 92.553 94 6 1 3601 3693 641003404 641003497 2.350000e-27 134.0
42 TraesCS5A01G496400 chr1D 96.471 85 3 0 3609 3693 318090090 318090006 1.410000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G496400 chr5A 663840608 663844359 3751 False 6929.0 6929 100.000 1 3752 1 chr5A.!!$F2 3751
1 TraesCS5A01G496400 chr5A 569066651 569068239 1588 True 1400.0 1400 82.697 994 2607 1 chr5A.!!$R2 1613
2 TraesCS5A01G496400 chr5A 559038746 559040332 1586 True 1005.0 1005 78.519 1000 2589 1 chr5A.!!$R1 1589
3 TraesCS5A01G496400 chr4D 483950546 483953825 3279 False 2143.0 4180 93.013 264 3605 2 chr4D.!!$F1 3341
4 TraesCS5A01G496400 chr4B 614719289 614722413 3124 False 1829.5 3326 90.428 481 3612 2 chr4B.!!$F1 3131
5 TraesCS5A01G496400 chr2D 643069505 643071129 1624 True 1472.0 1472 83.171 1001 2631 1 chr2D.!!$R2 1630
6 TraesCS5A01G496400 chr2D 642965524 642967139 1615 False 1434.0 1434 82.803 1001 2622 1 chr2D.!!$F1 1621
7 TraesCS5A01G496400 chr5D 449687181 449688790 1609 True 1461.0 1461 83.200 1001 2610 1 chr5D.!!$R3 1609
8 TraesCS5A01G496400 chr5D 442892940 442894533 1593 True 1002.0 1002 78.413 1000 2596 1 chr5D.!!$R2 1596
9 TraesCS5A01G496400 chr2A 767950428 767952043 1615 True 1428.0 1428 82.773 1001 2622 1 chr2A.!!$R1 1621
10 TraesCS5A01G496400 chrUn 31605501 31607124 1623 True 1410.0 1410 82.460 1001 2631 1 chrUn.!!$R1 1630
11 TraesCS5A01G496400 chr5B 549670022 549671417 1395 True 1256.0 1256 83.048 1238 2630 1 chr5B.!!$R1 1392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.027716 CGATGGAGGTGACGTAGACG 59.972 60.0 0.00 0.00 46.33 4.18 F
372 373 0.034896 GGATTGATACGGACCCGCAT 59.965 55.0 8.55 0.38 44.19 4.73 F
983 1023 0.106918 TTTCGGGCCACTTTGACACT 60.107 50.0 4.39 0.00 0.00 3.55 F
984 1024 0.534203 TTCGGGCCACTTTGACACTC 60.534 55.0 4.39 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1620 1691 1.136828 AACTGGTGGTGCTGAGGTAA 58.863 50.000 0.0 0.00 0.00 2.85 R
1680 1751 1.745489 GAACATGGGGAGCGTCCAC 60.745 63.158 0.0 3.32 41.45 4.02 R
2655 2747 1.021920 GCTTCCCCTTCGTCTTCTGC 61.022 60.000 0.0 0.00 0.00 4.26 R
2884 2984 1.136828 TGGTGCCAAGTTCCTACTGT 58.863 50.000 0.0 0.00 34.01 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.836821 GTTTGAAAGAAGAAGGGACAACT 57.163 39.130 0.00 0.00 0.00 3.16
23 24 6.208988 GTTTGAAAGAAGAAGGGACAACTT 57.791 37.500 0.00 0.00 0.00 2.66
24 25 6.631016 GTTTGAAAGAAGAAGGGACAACTTT 58.369 36.000 0.00 0.00 0.00 2.66
25 26 6.850752 TTGAAAGAAGAAGGGACAACTTTT 57.149 33.333 0.00 0.00 0.00 2.27
26 27 6.850752 TGAAAGAAGAAGGGACAACTTTTT 57.149 33.333 0.00 0.00 0.00 1.94
44 45 4.370364 TTTTTAGCCTCGGCAAATCATC 57.630 40.909 11.02 0.00 44.88 2.92
45 46 1.581934 TTAGCCTCGGCAAATCATCG 58.418 50.000 11.02 0.00 44.88 3.84
46 47 0.750249 TAGCCTCGGCAAATCATCGA 59.250 50.000 11.02 0.00 44.88 3.59
47 48 0.107703 AGCCTCGGCAAATCATCGAA 60.108 50.000 11.02 0.00 44.88 3.71
48 49 0.028110 GCCTCGGCAAATCATCGAAC 59.972 55.000 2.41 0.00 41.49 3.95
49 50 1.368641 CCTCGGCAAATCATCGAACA 58.631 50.000 0.00 0.00 32.35 3.18
50 51 1.737236 CCTCGGCAAATCATCGAACAA 59.263 47.619 0.00 0.00 32.35 2.83
51 52 2.355756 CCTCGGCAAATCATCGAACAAT 59.644 45.455 0.00 0.00 32.35 2.71
52 53 3.181497 CCTCGGCAAATCATCGAACAATT 60.181 43.478 0.00 0.00 32.35 2.32
53 54 3.757184 TCGGCAAATCATCGAACAATTG 58.243 40.909 3.24 3.24 0.00 2.32
54 55 2.279659 CGGCAAATCATCGAACAATTGC 59.720 45.455 16.37 16.37 41.69 3.56
55 56 3.912708 GCAAATCATCGAACAATTGCC 57.087 42.857 5.05 0.00 37.71 4.52
56 57 2.279659 GCAAATCATCGAACAATTGCCG 59.720 45.455 5.05 9.82 37.71 5.69
57 58 2.849880 AATCATCGAACAATTGCCGG 57.150 45.000 17.19 0.00 0.00 6.13
58 59 1.024271 ATCATCGAACAATTGCCGGG 58.976 50.000 17.19 11.66 0.00 5.73
59 60 1.226660 CATCGAACAATTGCCGGGC 60.227 57.895 13.32 13.32 0.00 6.13
60 61 1.677300 ATCGAACAATTGCCGGGCA 60.677 52.632 19.77 19.77 36.47 5.36
61 62 1.933115 ATCGAACAATTGCCGGGCAC 61.933 55.000 23.78 8.18 38.71 5.01
62 63 2.126502 GAACAATTGCCGGGCACG 60.127 61.111 23.78 15.63 38.71 5.34
63 64 2.596046 AACAATTGCCGGGCACGA 60.596 55.556 23.78 8.85 44.60 4.35
64 65 1.933115 GAACAATTGCCGGGCACGAT 61.933 55.000 23.78 11.17 44.60 3.73
65 66 2.102749 CAATTGCCGGGCACGATG 59.897 61.111 23.78 16.61 44.60 3.84
66 67 2.045438 AATTGCCGGGCACGATGA 60.045 55.556 23.78 7.07 44.60 2.92
67 68 2.114670 AATTGCCGGGCACGATGAG 61.115 57.895 23.78 0.00 44.60 2.90
68 69 2.819984 AATTGCCGGGCACGATGAGT 62.820 55.000 23.78 2.38 44.60 3.41
69 70 3.950794 TTGCCGGGCACGATGAGTC 62.951 63.158 23.78 0.00 44.60 3.36
70 71 4.148825 GCCGGGCACGATGAGTCT 62.149 66.667 11.66 0.00 44.60 3.24
71 72 2.782222 GCCGGGCACGATGAGTCTA 61.782 63.158 11.66 0.00 44.60 2.59
72 73 1.360551 CCGGGCACGATGAGTCTAG 59.639 63.158 11.66 0.00 44.60 2.43
73 74 1.299468 CGGGCACGATGAGTCTAGC 60.299 63.158 0.00 0.00 44.60 3.42
74 75 1.816537 GGGCACGATGAGTCTAGCA 59.183 57.895 0.00 0.00 0.00 3.49
75 76 0.249238 GGGCACGATGAGTCTAGCAG 60.249 60.000 0.00 0.00 0.00 4.24
76 77 0.457851 GGCACGATGAGTCTAGCAGT 59.542 55.000 0.00 0.00 0.00 4.40
77 78 1.134965 GGCACGATGAGTCTAGCAGTT 60.135 52.381 0.00 0.00 0.00 3.16
78 79 1.923204 GCACGATGAGTCTAGCAGTTG 59.077 52.381 0.00 0.00 0.00 3.16
79 80 2.672478 GCACGATGAGTCTAGCAGTTGT 60.672 50.000 0.00 0.00 0.00 3.32
80 81 2.919859 CACGATGAGTCTAGCAGTTGTG 59.080 50.000 0.00 0.00 0.00 3.33
81 82 2.094494 ACGATGAGTCTAGCAGTTGTGG 60.094 50.000 0.00 0.00 0.00 4.17
82 83 2.164422 CGATGAGTCTAGCAGTTGTGGA 59.836 50.000 0.00 0.00 0.00 4.02
83 84 3.181482 CGATGAGTCTAGCAGTTGTGGAT 60.181 47.826 0.00 0.00 0.00 3.41
84 85 4.679106 CGATGAGTCTAGCAGTTGTGGATT 60.679 45.833 0.00 0.00 0.00 3.01
85 86 3.930336 TGAGTCTAGCAGTTGTGGATTG 58.070 45.455 0.00 0.00 0.00 2.67
86 87 3.324846 TGAGTCTAGCAGTTGTGGATTGT 59.675 43.478 0.00 0.00 0.00 2.71
87 88 4.526650 TGAGTCTAGCAGTTGTGGATTGTA 59.473 41.667 0.00 0.00 0.00 2.41
88 89 4.822026 AGTCTAGCAGTTGTGGATTGTAC 58.178 43.478 0.00 0.00 0.00 2.90
89 90 3.933332 GTCTAGCAGTTGTGGATTGTACC 59.067 47.826 0.00 0.00 0.00 3.34
90 91 3.838317 TCTAGCAGTTGTGGATTGTACCT 59.162 43.478 0.00 0.00 0.00 3.08
91 92 2.783135 AGCAGTTGTGGATTGTACCTG 58.217 47.619 0.00 0.00 0.00 4.00
92 93 2.371841 AGCAGTTGTGGATTGTACCTGA 59.628 45.455 0.00 0.00 0.00 3.86
93 94 2.484264 GCAGTTGTGGATTGTACCTGAC 59.516 50.000 0.00 0.00 0.00 3.51
94 95 2.736721 CAGTTGTGGATTGTACCTGACG 59.263 50.000 0.00 0.00 0.00 4.35
95 96 2.073816 GTTGTGGATTGTACCTGACGG 58.926 52.381 0.00 0.00 0.00 4.79
96 97 0.611200 TGTGGATTGTACCTGACGGG 59.389 55.000 0.00 0.00 41.89 5.28
97 98 0.107848 GTGGATTGTACCTGACGGGG 60.108 60.000 5.03 0.00 40.03 5.73
98 99 1.153229 GGATTGTACCTGACGGGGC 60.153 63.158 5.03 0.00 40.03 5.80
99 100 1.520787 GATTGTACCTGACGGGGCG 60.521 63.158 5.03 0.00 40.03 6.13
100 101 2.918230 GATTGTACCTGACGGGGCGG 62.918 65.000 5.03 0.00 40.03 6.13
102 103 3.698820 GTACCTGACGGGGCGGTT 61.699 66.667 5.03 0.00 40.03 4.44
103 104 3.697747 TACCTGACGGGGCGGTTG 61.698 66.667 5.03 0.00 40.03 3.77
106 107 4.760047 CTGACGGGGCGGTTGGAG 62.760 72.222 0.00 0.00 0.00 3.86
111 112 3.787001 GGGGCGGTTGGAGGAGAG 61.787 72.222 0.00 0.00 0.00 3.20
112 113 3.787001 GGGCGGTTGGAGGAGAGG 61.787 72.222 0.00 0.00 0.00 3.69
113 114 3.787001 GGCGGTTGGAGGAGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
114 115 3.787001 GCGGTTGGAGGAGAGGGG 61.787 72.222 0.00 0.00 0.00 4.79
115 116 2.284699 CGGTTGGAGGAGAGGGGT 60.285 66.667 0.00 0.00 0.00 4.95
116 117 1.918800 CGGTTGGAGGAGAGGGGTT 60.919 63.158 0.00 0.00 0.00 4.11
117 118 1.685820 GGTTGGAGGAGAGGGGTTG 59.314 63.158 0.00 0.00 0.00 3.77
118 119 0.840722 GGTTGGAGGAGAGGGGTTGA 60.841 60.000 0.00 0.00 0.00 3.18
119 120 1.064825 GTTGGAGGAGAGGGGTTGAA 58.935 55.000 0.00 0.00 0.00 2.69
120 121 1.064825 TTGGAGGAGAGGGGTTGAAC 58.935 55.000 0.00 0.00 0.00 3.18
121 122 1.192146 TGGAGGAGAGGGGTTGAACG 61.192 60.000 0.00 0.00 0.00 3.95
122 123 1.597461 GAGGAGAGGGGTTGAACGG 59.403 63.158 0.00 0.00 0.00 4.44
123 124 2.046217 GGAGAGGGGTTGAACGGC 60.046 66.667 0.00 0.00 0.00 5.68
124 125 2.434359 GAGAGGGGTTGAACGGCG 60.434 66.667 4.80 4.80 0.00 6.46
125 126 3.952628 GAGAGGGGTTGAACGGCGG 62.953 68.421 13.24 0.00 0.00 6.13
143 144 4.148825 CGGAGGAGAAGCGGGGTG 62.149 72.222 0.00 0.00 0.00 4.61
144 145 3.787001 GGAGGAGAAGCGGGGTGG 61.787 72.222 0.00 0.00 0.00 4.61
145 146 2.683933 GAGGAGAAGCGGGGTGGA 60.684 66.667 0.00 0.00 0.00 4.02
146 147 2.685380 AGGAGAAGCGGGGTGGAG 60.685 66.667 0.00 0.00 0.00 3.86
147 148 4.475135 GGAGAAGCGGGGTGGAGC 62.475 72.222 0.00 0.00 0.00 4.70
148 149 3.394836 GAGAAGCGGGGTGGAGCT 61.395 66.667 0.00 0.00 46.97 4.09
149 150 3.378399 GAGAAGCGGGGTGGAGCTC 62.378 68.421 4.71 4.71 43.78 4.09
150 151 3.706373 GAAGCGGGGTGGAGCTCA 61.706 66.667 17.19 0.00 43.78 4.26
151 152 3.672295 GAAGCGGGGTGGAGCTCAG 62.672 68.421 17.19 0.30 43.78 3.35
154 155 4.463879 CGGGGTGGAGCTCAGCTG 62.464 72.222 17.19 7.63 39.88 4.24
155 156 3.005539 GGGGTGGAGCTCAGCTGA 61.006 66.667 17.19 17.19 39.88 4.26
156 157 2.596851 GGGGTGGAGCTCAGCTGAA 61.597 63.158 18.85 0.00 39.88 3.02
157 158 1.376466 GGGTGGAGCTCAGCTGAAA 59.624 57.895 18.85 0.00 39.88 2.69
158 159 0.957888 GGGTGGAGCTCAGCTGAAAC 60.958 60.000 18.85 12.90 39.88 2.78
159 160 1.294659 GGTGGAGCTCAGCTGAAACG 61.295 60.000 18.85 7.51 39.88 3.60
160 161 0.319900 GTGGAGCTCAGCTGAAACGA 60.320 55.000 18.85 6.48 39.88 3.85
161 162 0.610174 TGGAGCTCAGCTGAAACGAT 59.390 50.000 18.85 4.70 39.88 3.73
162 163 1.005340 GGAGCTCAGCTGAAACGATG 58.995 55.000 18.85 5.93 39.88 3.84
163 164 1.005340 GAGCTCAGCTGAAACGATGG 58.995 55.000 18.85 5.15 39.88 3.51
164 165 0.610174 AGCTCAGCTGAAACGATGGA 59.390 50.000 18.85 0.00 37.57 3.41
165 166 1.005340 GCTCAGCTGAAACGATGGAG 58.995 55.000 18.85 3.60 0.00 3.86
166 167 1.649664 CTCAGCTGAAACGATGGAGG 58.350 55.000 18.85 0.00 0.00 4.30
167 168 0.976641 TCAGCTGAAACGATGGAGGT 59.023 50.000 15.67 0.00 0.00 3.85
168 169 1.081892 CAGCTGAAACGATGGAGGTG 58.918 55.000 8.42 0.00 0.00 4.00
169 170 0.976641 AGCTGAAACGATGGAGGTGA 59.023 50.000 0.00 0.00 0.00 4.02
170 171 1.079503 GCTGAAACGATGGAGGTGAC 58.920 55.000 0.00 0.00 0.00 3.67
171 172 1.350193 CTGAAACGATGGAGGTGACG 58.650 55.000 0.00 0.00 0.00 4.35
172 173 0.677288 TGAAACGATGGAGGTGACGT 59.323 50.000 0.00 0.00 40.64 4.34
173 174 1.887854 TGAAACGATGGAGGTGACGTA 59.112 47.619 0.00 0.00 38.00 3.57
174 175 2.094906 TGAAACGATGGAGGTGACGTAG 60.095 50.000 0.00 0.00 38.00 3.51
175 176 1.830279 AACGATGGAGGTGACGTAGA 58.170 50.000 0.00 0.00 38.00 2.59
176 177 1.093159 ACGATGGAGGTGACGTAGAC 58.907 55.000 0.00 0.00 37.22 2.59
177 178 0.027716 CGATGGAGGTGACGTAGACG 59.972 60.000 0.00 0.00 46.33 4.18
190 191 2.937591 CGTAGACGTAGAGTTTTGGCA 58.062 47.619 0.00 0.00 34.11 4.92
191 192 3.508762 CGTAGACGTAGAGTTTTGGCAT 58.491 45.455 0.00 0.00 34.11 4.40
192 193 3.303495 CGTAGACGTAGAGTTTTGGCATG 59.697 47.826 0.00 0.00 34.11 4.06
193 194 2.699954 AGACGTAGAGTTTTGGCATGG 58.300 47.619 0.00 0.00 0.00 3.66
194 195 1.737793 GACGTAGAGTTTTGGCATGGG 59.262 52.381 0.00 0.00 0.00 4.00
195 196 1.073284 ACGTAGAGTTTTGGCATGGGT 59.927 47.619 0.00 0.00 0.00 4.51
196 197 1.468520 CGTAGAGTTTTGGCATGGGTG 59.531 52.381 0.00 0.00 0.00 4.61
197 198 2.514803 GTAGAGTTTTGGCATGGGTGT 58.485 47.619 0.00 0.00 0.00 4.16
198 199 1.331214 AGAGTTTTGGCATGGGTGTG 58.669 50.000 0.00 0.00 0.00 3.82
199 200 0.318120 GAGTTTTGGCATGGGTGTGG 59.682 55.000 0.00 0.00 0.00 4.17
200 201 1.301637 GTTTTGGCATGGGTGTGGC 60.302 57.895 0.00 0.00 44.24 5.01
201 202 2.865598 TTTTGGCATGGGTGTGGCG 61.866 57.895 0.00 0.00 46.68 5.69
202 203 4.594854 TTGGCATGGGTGTGGCGT 62.595 61.111 0.00 0.00 46.68 5.68
205 206 3.737172 GCATGGGTGTGGCGTGAC 61.737 66.667 0.00 0.00 0.00 3.67
206 207 3.422303 CATGGGTGTGGCGTGACG 61.422 66.667 0.00 0.00 0.00 4.35
207 208 3.936203 ATGGGTGTGGCGTGACGT 61.936 61.111 6.91 0.00 0.00 4.34
208 209 3.876589 ATGGGTGTGGCGTGACGTC 62.877 63.158 9.11 9.11 0.00 4.34
210 211 4.595538 GGTGTGGCGTGACGTCCA 62.596 66.667 14.12 15.19 32.67 4.02
211 212 3.036084 GTGTGGCGTGACGTCCAG 61.036 66.667 18.58 8.07 34.85 3.86
212 213 4.293648 TGTGGCGTGACGTCCAGG 62.294 66.667 18.58 8.08 34.85 4.45
213 214 3.986006 GTGGCGTGACGTCCAGGA 61.986 66.667 18.58 0.00 34.85 3.86
214 215 2.994995 TGGCGTGACGTCCAGGAT 60.995 61.111 14.12 0.00 31.80 3.24
215 216 2.509336 GGCGTGACGTCCAGGATG 60.509 66.667 14.12 7.18 32.66 3.51
216 217 2.571757 GCGTGACGTCCAGGATGA 59.428 61.111 16.28 0.00 39.69 2.92
217 218 1.141881 GCGTGACGTCCAGGATGAT 59.858 57.895 16.28 0.00 39.69 2.45
218 219 1.148157 GCGTGACGTCCAGGATGATG 61.148 60.000 16.28 0.49 39.69 3.07
219 220 0.528466 CGTGACGTCCAGGATGATGG 60.528 60.000 16.28 0.00 39.69 3.51
225 226 3.329497 TCCAGGATGATGGAGCAGT 57.671 52.632 0.00 0.00 44.56 4.40
226 227 0.835276 TCCAGGATGATGGAGCAGTG 59.165 55.000 0.00 0.00 44.56 3.66
227 228 0.179026 CCAGGATGATGGAGCAGTGG 60.179 60.000 0.00 0.00 43.57 4.00
228 229 0.818445 CAGGATGATGGAGCAGTGGC 60.818 60.000 0.00 0.00 39.69 5.01
240 241 2.080286 GCAGTGGCGAAAGTAAGAGA 57.920 50.000 0.00 0.00 0.00 3.10
241 242 1.996191 GCAGTGGCGAAAGTAAGAGAG 59.004 52.381 0.00 0.00 0.00 3.20
242 243 2.352814 GCAGTGGCGAAAGTAAGAGAGA 60.353 50.000 0.00 0.00 0.00 3.10
243 244 3.861131 GCAGTGGCGAAAGTAAGAGAGAA 60.861 47.826 0.00 0.00 0.00 2.87
244 245 4.307432 CAGTGGCGAAAGTAAGAGAGAAA 58.693 43.478 0.00 0.00 0.00 2.52
245 246 4.387256 CAGTGGCGAAAGTAAGAGAGAAAG 59.613 45.833 0.00 0.00 0.00 2.62
246 247 4.281182 AGTGGCGAAAGTAAGAGAGAAAGA 59.719 41.667 0.00 0.00 0.00 2.52
247 248 4.989168 GTGGCGAAAGTAAGAGAGAAAGAA 59.011 41.667 0.00 0.00 0.00 2.52
248 249 5.119434 GTGGCGAAAGTAAGAGAGAAAGAAG 59.881 44.000 0.00 0.00 0.00 2.85
249 250 4.627900 GGCGAAAGTAAGAGAGAAAGAAGG 59.372 45.833 0.00 0.00 0.00 3.46
250 251 5.471257 GCGAAAGTAAGAGAGAAAGAAGGA 58.529 41.667 0.00 0.00 0.00 3.36
251 252 5.927115 GCGAAAGTAAGAGAGAAAGAAGGAA 59.073 40.000 0.00 0.00 0.00 3.36
252 253 6.090223 GCGAAAGTAAGAGAGAAAGAAGGAAG 59.910 42.308 0.00 0.00 0.00 3.46
253 254 6.588373 CGAAAGTAAGAGAGAAAGAAGGAAGG 59.412 42.308 0.00 0.00 0.00 3.46
254 255 7.524038 CGAAAGTAAGAGAGAAAGAAGGAAGGA 60.524 40.741 0.00 0.00 0.00 3.36
255 256 6.850752 AGTAAGAGAGAAAGAAGGAAGGAG 57.149 41.667 0.00 0.00 0.00 3.69
256 257 6.557568 AGTAAGAGAGAAAGAAGGAAGGAGA 58.442 40.000 0.00 0.00 0.00 3.71
257 258 6.663523 AGTAAGAGAGAAAGAAGGAAGGAGAG 59.336 42.308 0.00 0.00 0.00 3.20
258 259 5.269554 AGAGAGAAAGAAGGAAGGAGAGA 57.730 43.478 0.00 0.00 0.00 3.10
259 260 5.650283 AGAGAGAAAGAAGGAAGGAGAGAA 58.350 41.667 0.00 0.00 0.00 2.87
260 261 6.081356 AGAGAGAAAGAAGGAAGGAGAGAAA 58.919 40.000 0.00 0.00 0.00 2.52
261 262 6.556874 AGAGAGAAAGAAGGAAGGAGAGAAAA 59.443 38.462 0.00 0.00 0.00 2.29
262 263 7.237471 AGAGAGAAAGAAGGAAGGAGAGAAAAT 59.763 37.037 0.00 0.00 0.00 1.82
269 270 2.649190 GAAGGAGAGAAAATGGAGGCC 58.351 52.381 0.00 0.00 0.00 5.19
277 278 0.696501 AAAATGGAGGCCTACGTGGT 59.303 50.000 11.55 0.00 38.35 4.16
280 281 1.198759 ATGGAGGCCTACGTGGTTGT 61.199 55.000 9.62 0.00 38.35 3.32
289 290 0.680618 TACGTGGTTGTTGTCCGGAT 59.319 50.000 7.81 0.00 0.00 4.18
293 294 0.250989 TGGTTGTTGTCCGGATTCCC 60.251 55.000 7.81 2.92 0.00 3.97
319 320 2.997315 TCCCACGCCTGTCTCCAG 60.997 66.667 0.00 0.00 38.50 3.86
357 358 1.301716 CCGGATTGATCGGCGGATT 60.302 57.895 7.21 0.00 41.07 3.01
369 370 1.663702 GCGGATTGATACGGACCCG 60.664 63.158 6.94 6.94 46.03 5.28
372 373 0.034896 GGATTGATACGGACCCGCAT 59.965 55.000 8.55 0.38 44.19 4.73
375 376 0.462937 TTGATACGGACCCGCATTGG 60.463 55.000 8.55 0.00 44.19 3.16
390 391 0.887933 ATTGGATGGCAAACCGTGTC 59.112 50.000 0.00 0.00 39.70 3.67
404 405 1.474017 CGTGTCCGGACAATACGATC 58.526 55.000 37.75 22.08 43.77 3.69
415 416 4.091509 GGACAATACGATCCGAACATATGC 59.908 45.833 1.58 0.00 0.00 3.14
416 417 3.673338 ACAATACGATCCGAACATATGCG 59.327 43.478 1.58 0.00 0.00 4.73
451 452 2.394604 GCGTTGGAGATGCCCTAAC 58.605 57.895 0.00 0.00 34.03 2.34
452 453 1.095807 GCGTTGGAGATGCCCTAACC 61.096 60.000 0.00 0.00 34.03 2.85
455 456 1.004277 GTTGGAGATGCCCTAACCACA 59.996 52.381 0.00 0.00 34.97 4.17
456 457 1.595311 TGGAGATGCCCTAACCACAT 58.405 50.000 0.00 0.00 34.97 3.21
457 458 2.770447 TGGAGATGCCCTAACCACATA 58.230 47.619 0.00 0.00 34.97 2.29
458 459 3.326521 TGGAGATGCCCTAACCACATAT 58.673 45.455 0.00 0.00 34.97 1.78
467 468 3.008049 CCCTAACCACATATAGGAGTGCC 59.992 52.174 0.45 0.00 41.03 5.01
534 535 2.880879 CGCATCGACCGGTCACTG 60.881 66.667 32.80 27.24 0.00 3.66
538 539 1.977009 ATCGACCGGTCACTGCTCA 60.977 57.895 32.80 8.50 0.00 4.26
540 541 2.048127 GACCGGTCACTGCTCACC 60.048 66.667 29.75 0.00 0.00 4.02
541 542 2.842462 ACCGGTCACTGCTCACCA 60.842 61.111 0.00 0.00 32.33 4.17
550 551 0.178932 ACTGCTCACCACCCACTAGA 60.179 55.000 0.00 0.00 0.00 2.43
551 552 0.534412 CTGCTCACCACCCACTAGAG 59.466 60.000 0.00 0.00 0.00 2.43
553 554 2.671145 CTCACCACCCACTAGAGCA 58.329 57.895 0.00 0.00 0.00 4.26
568 569 2.430921 GCACACAGTCCGGTCTCG 60.431 66.667 0.00 0.00 0.00 4.04
635 661 1.652124 ACGTGCGTGTGAAATATCGTC 59.348 47.619 0.00 0.00 0.00 4.20
652 678 3.843240 CGCTCGCTCGTCAAAGCC 61.843 66.667 0.00 0.00 39.17 4.35
803 829 3.663995 CAAATCACATTTGCTCCCACA 57.336 42.857 0.00 0.00 42.57 4.17
940 980 3.699894 AGCAGCCCGACACTCCTG 61.700 66.667 0.00 0.00 0.00 3.86
980 1020 0.317519 CGTTTTCGGGCCACTTTGAC 60.318 55.000 4.39 0.00 39.94 3.18
983 1023 0.106918 TTTCGGGCCACTTTGACACT 60.107 50.000 4.39 0.00 0.00 3.55
984 1024 0.534203 TTCGGGCCACTTTGACACTC 60.534 55.000 4.39 0.00 0.00 3.51
985 1025 2.317609 CGGGCCACTTTGACACTCG 61.318 63.158 4.39 0.00 0.00 4.18
1362 1424 5.590530 AGCTCTTCTTCGTTGACTATGAT 57.409 39.130 0.00 0.00 0.00 2.45
1965 2042 3.105149 GAGAAAATCGGCTTCAACGTC 57.895 47.619 0.00 0.00 0.00 4.34
2166 2246 2.499685 GACGGGAAGACGATGGGG 59.500 66.667 0.00 0.00 37.61 4.96
2791 2883 2.723618 GCCAACAACAAGCATACGTACG 60.724 50.000 15.01 15.01 0.00 3.67
2792 2884 2.477375 CCAACAACAAGCATACGTACGT 59.523 45.455 25.98 25.98 0.00 3.57
2793 2885 3.465907 CAACAACAAGCATACGTACGTG 58.534 45.455 30.25 15.95 0.00 4.49
2815 2907 3.732943 CGTTCCTACGTGCATTTTCTTC 58.267 45.455 0.00 0.00 42.72 2.87
2833 2927 1.688793 TCGTGATGTCGTACGGTTTG 58.311 50.000 16.52 0.00 40.48 2.93
2855 2954 3.179925 CCATGGTGGTCAGGTCATG 57.820 57.895 2.57 0.00 37.37 3.07
2879 2979 3.255149 AGAGGTCTACGTGTGTTGGTAAG 59.745 47.826 0.00 0.00 0.00 2.34
2884 2984 5.278463 GGTCTACGTGTGTTGGTAAGAAGTA 60.278 44.000 0.00 0.00 0.00 2.24
2885 2985 5.626955 GTCTACGTGTGTTGGTAAGAAGTAC 59.373 44.000 0.00 0.00 0.00 2.73
2886 2986 4.389890 ACGTGTGTTGGTAAGAAGTACA 57.610 40.909 0.00 0.00 34.01 2.90
2957 3057 1.822990 CAGGGAGTGCGGTTAAGACTA 59.177 52.381 0.00 0.00 0.00 2.59
2967 3067 4.703575 TGCGGTTAAGACTAAAGAGAGCTA 59.296 41.667 0.00 0.00 0.00 3.32
2968 3068 5.163642 TGCGGTTAAGACTAAAGAGAGCTAG 60.164 44.000 0.00 0.00 0.00 3.42
2969 3069 5.275494 CGGTTAAGACTAAAGAGAGCTAGC 58.725 45.833 6.62 6.62 0.00 3.42
2970 3070 5.066764 CGGTTAAGACTAAAGAGAGCTAGCT 59.933 44.000 19.45 19.45 0.00 3.32
2971 3071 6.270064 GGTTAAGACTAAAGAGAGCTAGCTG 58.730 44.000 24.99 8.30 0.00 4.24
2972 3072 6.127563 GGTTAAGACTAAAGAGAGCTAGCTGT 60.128 42.308 24.99 20.08 0.00 4.40
2973 3073 4.981806 AGACTAAAGAGAGCTAGCTGTG 57.018 45.455 24.99 8.36 0.00 3.66
2974 3074 4.594970 AGACTAAAGAGAGCTAGCTGTGA 58.405 43.478 24.99 2.07 0.00 3.58
3011 3113 2.751166 AGGATGAAACGAGGTCTGTG 57.249 50.000 0.00 0.00 0.00 3.66
3135 3237 4.897140 TGGAAATGCCAAGGAAATTCTTG 58.103 39.130 0.88 0.88 45.87 3.02
3189 3291 8.372459 TCAAATCCTTCTGTAAGCACTTAACTA 58.628 33.333 0.00 0.00 0.00 2.24
3194 3296 6.371825 CCTTCTGTAAGCACTTAACTAAAGGG 59.628 42.308 11.00 0.00 41.98 3.95
3195 3297 5.801380 TCTGTAAGCACTTAACTAAAGGGG 58.199 41.667 0.00 0.00 39.20 4.79
3196 3298 4.913784 TGTAAGCACTTAACTAAAGGGGG 58.086 43.478 0.00 0.00 39.20 5.40
3197 3299 4.351704 TGTAAGCACTTAACTAAAGGGGGT 59.648 41.667 0.00 0.00 39.20 4.95
3199 3301 2.983898 AGCACTTAACTAAAGGGGGTGA 59.016 45.455 0.00 0.00 39.20 4.02
3200 3302 3.079578 GCACTTAACTAAAGGGGGTGAC 58.920 50.000 0.00 0.00 39.20 3.67
3201 3303 3.244805 GCACTTAACTAAAGGGGGTGACT 60.245 47.826 0.00 0.00 39.20 3.41
3202 3304 4.019950 GCACTTAACTAAAGGGGGTGACTA 60.020 45.833 0.00 0.00 39.20 2.59
3203 3305 5.731591 CACTTAACTAAAGGGGGTGACTAG 58.268 45.833 0.00 0.00 39.73 2.57
3205 3307 6.156429 CACTTAACTAAAGGGGGTGACTAGAT 59.844 42.308 0.00 0.00 39.73 1.98
3206 3308 6.383436 ACTTAACTAAAGGGGGTGACTAGATC 59.617 42.308 0.00 0.00 39.73 2.75
3207 3309 4.628661 ACTAAAGGGGGTGACTAGATCT 57.371 45.455 0.00 0.00 0.00 2.75
3208 3310 4.548669 ACTAAAGGGGGTGACTAGATCTC 58.451 47.826 0.00 0.00 0.00 2.75
3209 3311 3.491766 AAAGGGGGTGACTAGATCTCA 57.508 47.619 0.00 0.00 0.00 3.27
3210 3312 2.765689 AGGGGGTGACTAGATCTCAG 57.234 55.000 0.00 0.00 0.00 3.35
3211 3313 1.933765 AGGGGGTGACTAGATCTCAGT 59.066 52.381 0.00 1.27 0.00 3.41
3212 3314 2.091555 AGGGGGTGACTAGATCTCAGTC 60.092 54.545 18.14 18.14 42.31 3.51
3213 3315 1.950909 GGGGTGACTAGATCTCAGTCG 59.049 57.143 18.98 2.68 44.44 4.18
3214 3316 2.421670 GGGGTGACTAGATCTCAGTCGA 60.422 54.545 18.98 10.93 44.44 4.20
3215 3317 3.482436 GGGTGACTAGATCTCAGTCGAT 58.518 50.000 18.98 0.00 44.44 3.59
3216 3318 3.886505 GGGTGACTAGATCTCAGTCGATT 59.113 47.826 18.98 0.00 44.44 3.34
3217 3319 4.339814 GGGTGACTAGATCTCAGTCGATTT 59.660 45.833 18.98 0.00 44.44 2.17
3218 3320 5.531659 GGGTGACTAGATCTCAGTCGATTTA 59.468 44.000 18.98 6.56 44.44 1.40
3219 3321 6.039493 GGGTGACTAGATCTCAGTCGATTTAA 59.961 42.308 18.98 6.09 44.44 1.52
3220 3322 6.913673 GGTGACTAGATCTCAGTCGATTTAAC 59.086 42.308 18.98 13.44 44.44 2.01
3221 3323 6.913673 GTGACTAGATCTCAGTCGATTTAACC 59.086 42.308 18.98 3.36 44.44 2.85
3222 3324 6.602009 TGACTAGATCTCAGTCGATTTAACCA 59.398 38.462 18.98 5.10 44.44 3.67
3223 3325 7.122204 TGACTAGATCTCAGTCGATTTAACCAA 59.878 37.037 18.98 4.20 44.44 3.67
3224 3326 7.484975 ACTAGATCTCAGTCGATTTAACCAAG 58.515 38.462 0.00 0.00 0.00 3.61
3225 3327 6.287589 AGATCTCAGTCGATTTAACCAAGT 57.712 37.500 0.00 0.00 0.00 3.16
3226 3328 6.334202 AGATCTCAGTCGATTTAACCAAGTC 58.666 40.000 0.00 0.00 0.00 3.01
3227 3329 4.817517 TCTCAGTCGATTTAACCAAGTCC 58.182 43.478 0.00 0.00 0.00 3.85
3228 3330 3.933332 CTCAGTCGATTTAACCAAGTCCC 59.067 47.826 0.00 0.00 0.00 4.46
3229 3331 3.325425 TCAGTCGATTTAACCAAGTCCCA 59.675 43.478 0.00 0.00 0.00 4.37
3230 3332 3.684788 CAGTCGATTTAACCAAGTCCCAG 59.315 47.826 0.00 0.00 0.00 4.45
3231 3333 3.326880 AGTCGATTTAACCAAGTCCCAGT 59.673 43.478 0.00 0.00 0.00 4.00
3232 3334 3.683340 GTCGATTTAACCAAGTCCCAGTC 59.317 47.826 0.00 0.00 0.00 3.51
3233 3335 3.325425 TCGATTTAACCAAGTCCCAGTCA 59.675 43.478 0.00 0.00 0.00 3.41
3234 3336 4.069304 CGATTTAACCAAGTCCCAGTCAA 58.931 43.478 0.00 0.00 0.00 3.18
3235 3337 4.154195 CGATTTAACCAAGTCCCAGTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
3236 3338 4.513406 TTTAACCAAGTCCCAGTCAAGT 57.487 40.909 0.00 0.00 0.00 3.16
3237 3339 2.348411 AACCAAGTCCCAGTCAAGTG 57.652 50.000 0.00 0.00 0.00 3.16
3238 3340 1.507140 ACCAAGTCCCAGTCAAGTGA 58.493 50.000 0.00 0.00 0.00 3.41
3239 3341 1.141053 ACCAAGTCCCAGTCAAGTGAC 59.859 52.381 3.12 3.12 45.08 3.67
3260 3362 9.107177 AGTGACATAATATGCAAGAGAGAAAAG 57.893 33.333 0.00 0.00 0.00 2.27
3261 3363 9.102757 GTGACATAATATGCAAGAGAGAAAAGA 57.897 33.333 0.00 0.00 0.00 2.52
3305 3407 9.745880 TTTACGAATCTTAATGTAGGATCTCAC 57.254 33.333 0.00 0.00 0.00 3.51
3306 3408 6.439599 ACGAATCTTAATGTAGGATCTCACG 58.560 40.000 0.00 0.00 0.00 4.35
3309 3411 7.546250 AATCTTAATGTAGGATCTCACGGAT 57.454 36.000 0.00 0.00 37.37 4.18
3310 3412 8.651589 AATCTTAATGTAGGATCTCACGGATA 57.348 34.615 0.00 0.00 34.33 2.59
3313 3415 9.397280 TCTTAATGTAGGATCTCACGGATATAG 57.603 37.037 0.00 0.00 34.33 1.31
3315 3417 4.918588 TGTAGGATCTCACGGATATAGCA 58.081 43.478 0.00 0.00 34.33 3.49
3316 3418 5.510430 TGTAGGATCTCACGGATATAGCAT 58.490 41.667 0.00 0.00 34.33 3.79
3318 3420 3.629855 AGGATCTCACGGATATAGCATCG 59.370 47.826 0.00 0.00 34.33 3.84
3319 3421 3.628032 GGATCTCACGGATATAGCATCGA 59.372 47.826 0.00 0.00 34.33 3.59
3320 3422 4.496673 GGATCTCACGGATATAGCATCGAC 60.497 50.000 0.00 0.00 34.33 4.20
3321 3423 3.676093 TCTCACGGATATAGCATCGACT 58.324 45.455 0.00 0.00 0.00 4.18
3322 3424 3.437049 TCTCACGGATATAGCATCGACTG 59.563 47.826 0.00 0.00 0.00 3.51
3323 3425 3.408634 TCACGGATATAGCATCGACTGA 58.591 45.455 0.00 0.00 0.00 3.41
3324 3426 3.437049 TCACGGATATAGCATCGACTGAG 59.563 47.826 0.00 0.00 0.00 3.35
3325 3427 3.437049 CACGGATATAGCATCGACTGAGA 59.563 47.826 0.00 0.00 0.00 3.27
3326 3428 3.437395 ACGGATATAGCATCGACTGAGAC 59.563 47.826 0.00 0.00 0.00 3.36
3328 3430 4.155099 CGGATATAGCATCGACTGAGACTT 59.845 45.833 0.00 0.00 0.00 3.01
3329 3431 5.351740 CGGATATAGCATCGACTGAGACTTA 59.648 44.000 0.00 0.00 0.00 2.24
3330 3432 6.128254 CGGATATAGCATCGACTGAGACTTAA 60.128 42.308 0.00 0.00 0.00 1.85
3331 3433 7.024768 GGATATAGCATCGACTGAGACTTAAC 58.975 42.308 0.00 0.00 0.00 2.01
3332 3434 5.836821 ATAGCATCGACTGAGACTTAACA 57.163 39.130 0.00 0.00 0.00 2.41
3333 3435 4.521130 AGCATCGACTGAGACTTAACAA 57.479 40.909 0.00 0.00 0.00 2.83
3334 3436 4.883083 AGCATCGACTGAGACTTAACAAA 58.117 39.130 0.00 0.00 0.00 2.83
3335 3437 4.926238 AGCATCGACTGAGACTTAACAAAG 59.074 41.667 0.00 0.00 0.00 2.77
3336 3438 4.686554 GCATCGACTGAGACTTAACAAAGT 59.313 41.667 0.00 0.00 35.34 2.66
3337 3439 5.177696 GCATCGACTGAGACTTAACAAAGTT 59.822 40.000 0.00 0.00 32.22 2.66
3338 3440 6.292919 GCATCGACTGAGACTTAACAAAGTTT 60.293 38.462 0.00 0.00 32.22 2.66
3339 3441 6.823678 TCGACTGAGACTTAACAAAGTTTC 57.176 37.500 2.73 2.73 35.26 2.78
3340 3442 5.457799 TCGACTGAGACTTAACAAAGTTTCG 59.542 40.000 4.87 0.00 36.88 3.46
3341 3443 5.332355 CGACTGAGACTTAACAAAGTTTCGG 60.332 44.000 13.26 13.26 42.63 4.30
3342 3444 5.425630 ACTGAGACTTAACAAAGTTTCGGT 58.574 37.500 14.26 14.26 44.08 4.69
3343 3445 5.522824 ACTGAGACTTAACAAAGTTTCGGTC 59.477 40.000 14.26 0.00 45.04 4.79
3344 3446 4.505191 TGAGACTTAACAAAGTTTCGGTCG 59.495 41.667 4.87 0.00 36.88 4.79
3345 3447 4.685924 AGACTTAACAAAGTTTCGGTCGA 58.314 39.130 0.00 0.00 32.22 4.20
3346 3448 4.505556 AGACTTAACAAAGTTTCGGTCGAC 59.494 41.667 7.13 7.13 32.22 4.20
3348 3450 5.591099 ACTTAACAAAGTTTCGGTCGACTA 58.409 37.500 16.46 0.83 0.00 2.59
3350 3452 6.199719 ACTTAACAAAGTTTCGGTCGACTAAG 59.800 38.462 16.46 12.34 0.00 2.18
3352 3454 4.047142 ACAAAGTTTCGGTCGACTAAGAC 58.953 43.478 16.46 9.11 40.25 3.01
3353 3455 4.202090 ACAAAGTTTCGGTCGACTAAGACT 60.202 41.667 16.46 11.18 40.76 3.24
3354 3456 4.581077 AAGTTTCGGTCGACTAAGACTT 57.419 40.909 16.46 15.98 40.76 3.01
3356 3458 5.294050 AGTTTCGGTCGACTAAGACTTAG 57.706 43.478 18.80 18.80 40.76 2.18
3357 3459 3.754188 TTCGGTCGACTAAGACTTAGC 57.246 47.619 20.05 12.60 40.76 3.09
3358 3460 2.703416 TCGGTCGACTAAGACTTAGCA 58.297 47.619 20.05 3.98 40.76 3.49
3360 3462 3.126514 TCGGTCGACTAAGACTTAGCAAG 59.873 47.826 20.05 12.35 40.76 4.01
3361 3463 3.126514 CGGTCGACTAAGACTTAGCAAGA 59.873 47.826 20.05 14.15 40.76 3.02
3363 3465 4.156373 GGTCGACTAAGACTTAGCAAGACT 59.844 45.833 26.61 10.87 40.76 3.24
3364 3466 5.090083 GTCGACTAAGACTTAGCAAGACTG 58.910 45.833 23.70 10.11 38.09 3.51
3365 3467 4.760715 TCGACTAAGACTTAGCAAGACTGT 59.239 41.667 20.05 1.17 36.71 3.55
3370 3592 7.953752 ACTAAGACTTAGCAAGACTGTTAACT 58.046 34.615 20.05 0.00 36.71 2.24
3412 3634 1.230635 CCTCTGCAGTTGGAACCACG 61.231 60.000 14.67 0.00 0.00 4.94
3433 3655 1.439644 CTCCCTCGCTAACCTCAGC 59.560 63.158 0.00 0.00 38.23 4.26
3469 3799 4.295051 GTTCCATTTGCGTGTAAACATGT 58.705 39.130 0.00 0.00 35.38 3.21
3496 3826 7.338449 ACGGCCATACAAGTCTTATTAAAATGT 59.662 33.333 2.24 0.00 0.00 2.71
3497 3827 8.188139 CGGCCATACAAGTCTTATTAAAATGTT 58.812 33.333 2.24 0.00 0.00 2.71
3574 3940 4.517075 GCTTGCCAGAAATTACTATCTCCC 59.483 45.833 0.00 0.00 0.00 4.30
3612 3978 3.003897 ACGCTAGCTGCAAGATACTACTC 59.996 47.826 13.93 0.00 43.06 2.59
3613 3979 3.610585 CGCTAGCTGCAAGATACTACTCC 60.611 52.174 13.93 0.00 43.06 3.85
3614 3980 3.305744 GCTAGCTGCAAGATACTACTCCC 60.306 52.174 7.70 0.00 42.31 4.30
3615 3981 3.039252 AGCTGCAAGATACTACTCCCT 57.961 47.619 1.02 0.00 34.07 4.20
3616 3982 2.962421 AGCTGCAAGATACTACTCCCTC 59.038 50.000 1.02 0.00 34.07 4.30
3617 3983 2.036604 GCTGCAAGATACTACTCCCTCC 59.963 54.545 0.00 0.00 34.07 4.30
3618 3984 2.294791 CTGCAAGATACTACTCCCTCCG 59.705 54.545 0.00 0.00 34.07 4.63
3619 3985 2.308690 GCAAGATACTACTCCCTCCGT 58.691 52.381 0.00 0.00 0.00 4.69
3620 3986 3.117776 TGCAAGATACTACTCCCTCCGTA 60.118 47.826 0.00 0.00 0.00 4.02
3621 3987 3.887716 GCAAGATACTACTCCCTCCGTAA 59.112 47.826 0.00 0.00 0.00 3.18
3622 3988 4.340381 GCAAGATACTACTCCCTCCGTAAA 59.660 45.833 0.00 0.00 0.00 2.01
3623 3989 5.735638 GCAAGATACTACTCCCTCCGTAAAC 60.736 48.000 0.00 0.00 0.00 2.01
3624 3990 5.385628 AGATACTACTCCCTCCGTAAACT 57.614 43.478 0.00 0.00 0.00 2.66
3625 3991 6.506538 AGATACTACTCCCTCCGTAAACTA 57.493 41.667 0.00 0.00 0.00 2.24
3626 3992 6.904626 AGATACTACTCCCTCCGTAAACTAA 58.095 40.000 0.00 0.00 0.00 2.24
3627 3993 7.525165 AGATACTACTCCCTCCGTAAACTAAT 58.475 38.462 0.00 0.00 0.00 1.73
3628 3994 8.664079 AGATACTACTCCCTCCGTAAACTAATA 58.336 37.037 0.00 0.00 0.00 0.98
3629 3995 9.460019 GATACTACTCCCTCCGTAAACTAATAT 57.540 37.037 0.00 0.00 0.00 1.28
3632 3998 9.646522 ACTACTCCCTCCGTAAACTAATATAAA 57.353 33.333 0.00 0.00 0.00 1.40
3635 4001 9.605275 ACTCCCTCCGTAAACTAATATAAAAAC 57.395 33.333 0.00 0.00 0.00 2.43
3636 4002 9.603921 CTCCCTCCGTAAACTAATATAAAAACA 57.396 33.333 0.00 0.00 0.00 2.83
3699 4065 9.765295 ATTAGTTTACAGAGGGAGTACTAGAAA 57.235 33.333 0.00 0.00 0.00 2.52
3700 4066 7.706100 AGTTTACAGAGGGAGTACTAGAAAG 57.294 40.000 0.00 0.00 0.00 2.62
3701 4067 6.664384 AGTTTACAGAGGGAGTACTAGAAAGG 59.336 42.308 0.00 0.00 0.00 3.11
3702 4068 4.949966 ACAGAGGGAGTACTAGAAAGGA 57.050 45.455 0.00 0.00 0.00 3.36
3703 4069 4.602107 ACAGAGGGAGTACTAGAAAGGAC 58.398 47.826 0.00 0.00 36.74 3.85
3704 4070 4.044317 ACAGAGGGAGTACTAGAAAGGACA 59.956 45.833 0.00 0.00 39.27 4.02
3705 4071 4.399934 CAGAGGGAGTACTAGAAAGGACAC 59.600 50.000 0.00 0.00 39.27 3.67
3706 4072 3.354467 AGGGAGTACTAGAAAGGACACG 58.646 50.000 0.00 0.00 39.27 4.49
3707 4073 3.009916 AGGGAGTACTAGAAAGGACACGA 59.990 47.826 0.00 0.00 39.27 4.35
3708 4074 3.377798 GGGAGTACTAGAAAGGACACGAG 59.622 52.174 0.00 0.00 39.27 4.18
3709 4075 3.377798 GGAGTACTAGAAAGGACACGAGG 59.622 52.174 0.00 0.00 39.27 4.63
3710 4076 4.260170 GAGTACTAGAAAGGACACGAGGA 58.740 47.826 0.00 0.00 39.27 3.71
3711 4077 4.857679 AGTACTAGAAAGGACACGAGGAT 58.142 43.478 0.00 0.00 39.27 3.24
3712 4078 5.999044 AGTACTAGAAAGGACACGAGGATA 58.001 41.667 0.00 0.00 39.27 2.59
3713 4079 6.603224 AGTACTAGAAAGGACACGAGGATAT 58.397 40.000 0.00 0.00 39.27 1.63
3714 4080 7.061688 AGTACTAGAAAGGACACGAGGATATT 58.938 38.462 0.00 0.00 39.27 1.28
3715 4081 6.394025 ACTAGAAAGGACACGAGGATATTC 57.606 41.667 0.00 0.00 0.00 1.75
3716 4082 4.308899 AGAAAGGACACGAGGATATTCG 57.691 45.455 0.00 0.00 45.70 3.34
3726 4092 4.153958 CGAGGATATTCGTGGAGAAGAG 57.846 50.000 0.00 0.00 42.92 2.85
3727 4093 3.566322 CGAGGATATTCGTGGAGAAGAGT 59.434 47.826 0.00 0.00 42.92 3.24
3728 4094 4.555708 CGAGGATATTCGTGGAGAAGAGTG 60.556 50.000 0.00 0.00 42.92 3.51
3729 4095 4.537751 AGGATATTCGTGGAGAAGAGTGA 58.462 43.478 0.00 0.00 42.92 3.41
3730 4096 4.339814 AGGATATTCGTGGAGAAGAGTGAC 59.660 45.833 0.00 0.00 42.92 3.67
3731 4097 4.098044 GGATATTCGTGGAGAAGAGTGACA 59.902 45.833 0.00 0.00 42.92 3.58
3732 4098 5.394224 GGATATTCGTGGAGAAGAGTGACAA 60.394 44.000 0.00 0.00 42.92 3.18
3733 4099 3.371102 TTCGTGGAGAAGAGTGACAAG 57.629 47.619 0.00 0.00 34.26 3.16
3734 4100 2.583143 TCGTGGAGAAGAGTGACAAGA 58.417 47.619 0.00 0.00 0.00 3.02
3735 4101 2.554462 TCGTGGAGAAGAGTGACAAGAG 59.446 50.000 0.00 0.00 0.00 2.85
3736 4102 2.682836 GTGGAGAAGAGTGACAAGAGC 58.317 52.381 0.00 0.00 0.00 4.09
3737 4103 2.298729 GTGGAGAAGAGTGACAAGAGCT 59.701 50.000 0.00 0.00 0.00 4.09
3738 4104 2.560542 TGGAGAAGAGTGACAAGAGCTC 59.439 50.000 5.27 5.27 0.00 4.09
3739 4105 2.825532 GGAGAAGAGTGACAAGAGCTCT 59.174 50.000 11.45 11.45 40.89 4.09
3740 4106 3.119495 GGAGAAGAGTGACAAGAGCTCTC 60.119 52.174 18.55 5.52 38.50 3.20
3741 4107 2.487762 AGAAGAGTGACAAGAGCTCTCG 59.512 50.000 18.55 8.81 38.50 4.04
3742 4108 1.904287 AGAGTGACAAGAGCTCTCGT 58.096 50.000 18.55 13.00 34.86 4.18
3743 4109 1.539388 AGAGTGACAAGAGCTCTCGTG 59.461 52.381 18.55 15.28 43.20 4.35
3744 4110 1.537638 GAGTGACAAGAGCTCTCGTGA 59.462 52.381 18.55 2.39 40.69 4.35
3745 4111 2.163412 GAGTGACAAGAGCTCTCGTGAT 59.837 50.000 18.55 0.00 40.69 3.06
3746 4112 2.560542 AGTGACAAGAGCTCTCGTGATT 59.439 45.455 18.55 0.00 40.69 2.57
3747 4113 2.920490 GTGACAAGAGCTCTCGTGATTC 59.080 50.000 18.55 7.78 40.69 2.52
3748 4114 2.822561 TGACAAGAGCTCTCGTGATTCT 59.177 45.455 18.55 0.00 40.69 2.40
3749 4115 3.119673 TGACAAGAGCTCTCGTGATTCTC 60.120 47.826 18.55 6.74 40.69 2.87
3750 4116 2.159448 ACAAGAGCTCTCGTGATTCTCG 60.159 50.000 18.55 1.81 40.69 4.04
3751 4117 1.745232 AGAGCTCTCGTGATTCTCGT 58.255 50.000 11.45 0.00 34.09 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.836821 AGTTGTCCCTTCTTCTTTCAAAC 57.163 39.130 0.00 0.00 0.00 2.93
1 2 6.850752 AAAGTTGTCCCTTCTTCTTTCAAA 57.149 33.333 0.00 0.00 0.00 2.69
2 3 6.850752 AAAAGTTGTCCCTTCTTCTTTCAA 57.149 33.333 0.00 0.00 0.00 2.69
3 4 6.850752 AAAAAGTTGTCCCTTCTTCTTTCA 57.149 33.333 0.00 0.00 0.00 2.69
23 24 3.181501 CGATGATTTGCCGAGGCTAAAAA 60.182 43.478 15.75 8.00 39.04 1.94
24 25 2.354510 CGATGATTTGCCGAGGCTAAAA 59.645 45.455 15.75 8.71 39.04 1.52
25 26 1.939934 CGATGATTTGCCGAGGCTAAA 59.060 47.619 15.75 13.43 39.04 1.85
26 27 1.138069 TCGATGATTTGCCGAGGCTAA 59.862 47.619 15.75 14.22 42.51 3.09
27 28 0.750249 TCGATGATTTGCCGAGGCTA 59.250 50.000 15.75 4.76 42.51 3.93
28 29 0.107703 TTCGATGATTTGCCGAGGCT 60.108 50.000 15.75 0.00 42.51 4.58
29 30 0.028110 GTTCGATGATTTGCCGAGGC 59.972 55.000 7.26 7.26 42.35 4.70
30 31 1.368641 TGTTCGATGATTTGCCGAGG 58.631 50.000 0.00 0.00 33.66 4.63
31 32 3.680642 ATTGTTCGATGATTTGCCGAG 57.319 42.857 0.00 0.00 33.66 4.63
32 33 3.757184 CAATTGTTCGATGATTTGCCGA 58.243 40.909 0.00 0.00 0.00 5.54
33 34 2.279659 GCAATTGTTCGATGATTTGCCG 59.720 45.455 7.40 0.00 0.00 5.69
34 35 2.604462 GGCAATTGTTCGATGATTTGCC 59.396 45.455 20.03 20.03 0.00 4.52
35 36 2.279659 CGGCAATTGTTCGATGATTTGC 59.720 45.455 14.98 12.54 0.00 3.68
36 37 2.853594 CCGGCAATTGTTCGATGATTTG 59.146 45.455 19.61 0.00 0.00 2.32
37 38 2.159254 CCCGGCAATTGTTCGATGATTT 60.159 45.455 19.61 0.00 0.00 2.17
38 39 1.405105 CCCGGCAATTGTTCGATGATT 59.595 47.619 19.61 0.00 0.00 2.57
39 40 1.024271 CCCGGCAATTGTTCGATGAT 58.976 50.000 19.61 0.00 0.00 2.45
40 41 1.653094 GCCCGGCAATTGTTCGATGA 61.653 55.000 19.61 0.00 0.00 2.92
41 42 1.226660 GCCCGGCAATTGTTCGATG 60.227 57.895 19.61 13.15 0.00 3.84
42 43 1.677300 TGCCCGGCAATTGTTCGAT 60.677 52.632 10.50 0.00 34.76 3.59
43 44 2.281831 TGCCCGGCAATTGTTCGA 60.282 55.556 10.50 0.00 34.76 3.71
44 45 2.126502 GTGCCCGGCAATTGTTCG 60.127 61.111 15.39 11.23 41.47 3.95
45 46 1.933115 ATCGTGCCCGGCAATTGTTC 61.933 55.000 15.39 0.00 41.47 3.18
46 47 1.976474 ATCGTGCCCGGCAATTGTT 60.976 52.632 15.39 0.00 41.47 2.83
47 48 2.361104 ATCGTGCCCGGCAATTGT 60.361 55.556 15.39 0.00 41.47 2.71
48 49 2.102749 CATCGTGCCCGGCAATTG 59.897 61.111 15.39 8.35 41.47 2.32
49 50 2.045438 TCATCGTGCCCGGCAATT 60.045 55.556 15.39 0.00 41.47 2.32
50 51 2.514592 CTCATCGTGCCCGGCAAT 60.515 61.111 15.39 1.50 41.47 3.56
51 52 3.950794 GACTCATCGTGCCCGGCAA 62.951 63.158 15.39 0.00 41.47 4.52
52 53 4.451150 GACTCATCGTGCCCGGCA 62.451 66.667 8.43 8.43 35.60 5.69
53 54 2.685387 CTAGACTCATCGTGCCCGGC 62.685 65.000 1.04 1.04 33.95 6.13
54 55 1.360551 CTAGACTCATCGTGCCCGG 59.639 63.158 0.00 0.00 33.95 5.73
55 56 1.299468 GCTAGACTCATCGTGCCCG 60.299 63.158 0.00 0.00 0.00 6.13
56 57 0.249238 CTGCTAGACTCATCGTGCCC 60.249 60.000 0.00 0.00 0.00 5.36
57 58 0.457851 ACTGCTAGACTCATCGTGCC 59.542 55.000 0.00 0.00 0.00 5.01
58 59 1.923204 CAACTGCTAGACTCATCGTGC 59.077 52.381 0.00 0.00 0.00 5.34
59 60 2.919859 CACAACTGCTAGACTCATCGTG 59.080 50.000 0.00 0.00 0.00 4.35
60 61 2.094494 CCACAACTGCTAGACTCATCGT 60.094 50.000 0.00 0.00 0.00 3.73
61 62 2.164422 TCCACAACTGCTAGACTCATCG 59.836 50.000 0.00 0.00 0.00 3.84
62 63 3.876274 TCCACAACTGCTAGACTCATC 57.124 47.619 0.00 0.00 0.00 2.92
63 64 4.019860 ACAATCCACAACTGCTAGACTCAT 60.020 41.667 0.00 0.00 0.00 2.90
64 65 3.324846 ACAATCCACAACTGCTAGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
65 66 3.931578 ACAATCCACAACTGCTAGACTC 58.068 45.455 0.00 0.00 0.00 3.36
66 67 4.322801 GGTACAATCCACAACTGCTAGACT 60.323 45.833 0.00 0.00 0.00 3.24
67 68 3.933332 GGTACAATCCACAACTGCTAGAC 59.067 47.826 0.00 0.00 0.00 2.59
68 69 3.838317 AGGTACAATCCACAACTGCTAGA 59.162 43.478 0.00 0.00 0.00 2.43
69 70 3.935203 CAGGTACAATCCACAACTGCTAG 59.065 47.826 0.00 0.00 0.00 3.42
70 71 3.580895 TCAGGTACAATCCACAACTGCTA 59.419 43.478 0.00 0.00 0.00 3.49
71 72 2.371841 TCAGGTACAATCCACAACTGCT 59.628 45.455 0.00 0.00 0.00 4.24
72 73 2.484264 GTCAGGTACAATCCACAACTGC 59.516 50.000 0.00 0.00 0.00 4.40
73 74 2.736721 CGTCAGGTACAATCCACAACTG 59.263 50.000 0.00 0.00 0.00 3.16
74 75 2.289444 CCGTCAGGTACAATCCACAACT 60.289 50.000 0.00 0.00 0.00 3.16
75 76 2.073816 CCGTCAGGTACAATCCACAAC 58.926 52.381 0.00 0.00 0.00 3.32
76 77 1.002659 CCCGTCAGGTACAATCCACAA 59.997 52.381 0.00 0.00 35.12 3.33
77 78 0.611200 CCCGTCAGGTACAATCCACA 59.389 55.000 0.00 0.00 35.12 4.17
78 79 0.107848 CCCCGTCAGGTACAATCCAC 60.108 60.000 0.00 0.00 35.12 4.02
79 80 1.906105 GCCCCGTCAGGTACAATCCA 61.906 60.000 0.00 0.00 35.12 3.41
80 81 1.153229 GCCCCGTCAGGTACAATCC 60.153 63.158 0.00 0.00 35.12 3.01
81 82 1.520787 CGCCCCGTCAGGTACAATC 60.521 63.158 0.00 0.00 35.12 2.67
82 83 2.582436 CGCCCCGTCAGGTACAAT 59.418 61.111 0.00 0.00 35.12 2.71
83 84 3.697747 CCGCCCCGTCAGGTACAA 61.698 66.667 0.00 0.00 35.12 2.41
85 86 3.698820 AACCGCCCCGTCAGGTAC 61.699 66.667 0.00 0.00 37.26 3.34
86 87 3.697747 CAACCGCCCCGTCAGGTA 61.698 66.667 0.00 0.00 37.26 3.08
89 90 4.760047 CTCCAACCGCCCCGTCAG 62.760 72.222 0.00 0.00 0.00 3.51
94 95 3.787001 CTCTCCTCCAACCGCCCC 61.787 72.222 0.00 0.00 0.00 5.80
95 96 3.787001 CCTCTCCTCCAACCGCCC 61.787 72.222 0.00 0.00 0.00 6.13
96 97 3.787001 CCCTCTCCTCCAACCGCC 61.787 72.222 0.00 0.00 0.00 6.13
97 98 3.787001 CCCCTCTCCTCCAACCGC 61.787 72.222 0.00 0.00 0.00 5.68
98 99 1.918800 AACCCCTCTCCTCCAACCG 60.919 63.158 0.00 0.00 0.00 4.44
99 100 0.840722 TCAACCCCTCTCCTCCAACC 60.841 60.000 0.00 0.00 0.00 3.77
100 101 1.064825 TTCAACCCCTCTCCTCCAAC 58.935 55.000 0.00 0.00 0.00 3.77
101 102 1.064825 GTTCAACCCCTCTCCTCCAA 58.935 55.000 0.00 0.00 0.00 3.53
102 103 1.192146 CGTTCAACCCCTCTCCTCCA 61.192 60.000 0.00 0.00 0.00 3.86
103 104 1.597461 CGTTCAACCCCTCTCCTCC 59.403 63.158 0.00 0.00 0.00 4.30
104 105 1.597461 CCGTTCAACCCCTCTCCTC 59.403 63.158 0.00 0.00 0.00 3.71
105 106 2.593956 GCCGTTCAACCCCTCTCCT 61.594 63.158 0.00 0.00 0.00 3.69
106 107 2.046217 GCCGTTCAACCCCTCTCC 60.046 66.667 0.00 0.00 0.00 3.71
107 108 2.434359 CGCCGTTCAACCCCTCTC 60.434 66.667 0.00 0.00 0.00 3.20
108 109 4.016706 CCGCCGTTCAACCCCTCT 62.017 66.667 0.00 0.00 0.00 3.69
126 127 4.148825 CACCCCGCTTCTCCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
127 128 3.787001 CCACCCCGCTTCTCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
128 129 2.683933 TCCACCCCGCTTCTCCTC 60.684 66.667 0.00 0.00 0.00 3.71
129 130 2.685380 CTCCACCCCGCTTCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
130 131 4.475135 GCTCCACCCCGCTTCTCC 62.475 72.222 0.00 0.00 0.00 3.71
131 132 3.378399 GAGCTCCACCCCGCTTCTC 62.378 68.421 0.87 0.00 36.45 2.87
132 133 3.394836 GAGCTCCACCCCGCTTCT 61.395 66.667 0.87 0.00 36.45 2.85
133 134 3.672295 CTGAGCTCCACCCCGCTTC 62.672 68.421 12.15 0.00 36.45 3.86
134 135 3.710722 CTGAGCTCCACCCCGCTT 61.711 66.667 12.15 0.00 36.45 4.68
137 138 4.463879 CAGCTGAGCTCCACCCCG 62.464 72.222 8.42 0.00 36.40 5.73
138 139 2.129555 TTTCAGCTGAGCTCCACCCC 62.130 60.000 17.43 0.00 36.40 4.95
139 140 0.957888 GTTTCAGCTGAGCTCCACCC 60.958 60.000 17.43 0.00 36.40 4.61
140 141 1.294659 CGTTTCAGCTGAGCTCCACC 61.295 60.000 17.43 0.00 36.40 4.61
141 142 0.319900 TCGTTTCAGCTGAGCTCCAC 60.320 55.000 17.43 8.90 36.40 4.02
142 143 0.610174 ATCGTTTCAGCTGAGCTCCA 59.390 50.000 17.43 0.00 36.40 3.86
143 144 1.005340 CATCGTTTCAGCTGAGCTCC 58.995 55.000 17.43 5.32 36.40 4.70
144 145 1.005340 CCATCGTTTCAGCTGAGCTC 58.995 55.000 17.43 6.82 36.40 4.09
145 146 0.610174 TCCATCGTTTCAGCTGAGCT 59.390 50.000 17.43 0.00 40.77 4.09
146 147 1.005340 CTCCATCGTTTCAGCTGAGC 58.995 55.000 17.43 12.82 0.00 4.26
147 148 1.066573 ACCTCCATCGTTTCAGCTGAG 60.067 52.381 17.43 5.77 0.00 3.35
148 149 0.976641 ACCTCCATCGTTTCAGCTGA 59.023 50.000 13.74 13.74 0.00 4.26
149 150 1.081892 CACCTCCATCGTTTCAGCTG 58.918 55.000 7.63 7.63 0.00 4.24
150 151 0.976641 TCACCTCCATCGTTTCAGCT 59.023 50.000 0.00 0.00 0.00 4.24
151 152 1.079503 GTCACCTCCATCGTTTCAGC 58.920 55.000 0.00 0.00 0.00 4.26
152 153 1.336887 ACGTCACCTCCATCGTTTCAG 60.337 52.381 0.00 0.00 32.62 3.02
153 154 0.677288 ACGTCACCTCCATCGTTTCA 59.323 50.000 0.00 0.00 32.62 2.69
154 155 2.163010 TCTACGTCACCTCCATCGTTTC 59.837 50.000 0.00 0.00 37.66 2.78
155 156 2.094854 GTCTACGTCACCTCCATCGTTT 60.095 50.000 0.00 0.00 37.66 3.60
156 157 1.471684 GTCTACGTCACCTCCATCGTT 59.528 52.381 0.00 0.00 37.66 3.85
157 158 1.093159 GTCTACGTCACCTCCATCGT 58.907 55.000 0.00 0.00 39.74 3.73
158 159 0.027716 CGTCTACGTCACCTCCATCG 59.972 60.000 0.00 0.00 34.11 3.84
159 160 3.920144 CGTCTACGTCACCTCCATC 57.080 57.895 0.00 0.00 34.11 3.51
170 171 2.937591 TGCCAAAACTCTACGTCTACG 58.062 47.619 0.00 0.04 46.33 3.51
171 172 3.617263 CCATGCCAAAACTCTACGTCTAC 59.383 47.826 0.00 0.00 0.00 2.59
172 173 3.369052 CCCATGCCAAAACTCTACGTCTA 60.369 47.826 0.00 0.00 0.00 2.59
173 174 2.615493 CCCATGCCAAAACTCTACGTCT 60.615 50.000 0.00 0.00 0.00 4.18
174 175 1.737793 CCCATGCCAAAACTCTACGTC 59.262 52.381 0.00 0.00 0.00 4.34
175 176 1.073284 ACCCATGCCAAAACTCTACGT 59.927 47.619 0.00 0.00 0.00 3.57
176 177 1.468520 CACCCATGCCAAAACTCTACG 59.531 52.381 0.00 0.00 0.00 3.51
177 178 2.228822 CACACCCATGCCAAAACTCTAC 59.771 50.000 0.00 0.00 0.00 2.59
178 179 2.513753 CACACCCATGCCAAAACTCTA 58.486 47.619 0.00 0.00 0.00 2.43
179 180 1.331214 CACACCCATGCCAAAACTCT 58.669 50.000 0.00 0.00 0.00 3.24
180 181 0.318120 CCACACCCATGCCAAAACTC 59.682 55.000 0.00 0.00 0.00 3.01
181 182 1.757423 GCCACACCCATGCCAAAACT 61.757 55.000 0.00 0.00 0.00 2.66
182 183 1.301637 GCCACACCCATGCCAAAAC 60.302 57.895 0.00 0.00 0.00 2.43
183 184 2.865598 CGCCACACCCATGCCAAAA 61.866 57.895 0.00 0.00 0.00 2.44
184 185 3.301554 CGCCACACCCATGCCAAA 61.302 61.111 0.00 0.00 0.00 3.28
185 186 4.594854 ACGCCACACCCATGCCAA 62.595 61.111 0.00 0.00 0.00 4.52
188 189 3.737172 GTCACGCCACACCCATGC 61.737 66.667 0.00 0.00 0.00 4.06
189 190 3.422303 CGTCACGCCACACCCATG 61.422 66.667 0.00 0.00 0.00 3.66
190 191 3.876589 GACGTCACGCCACACCCAT 62.877 63.158 11.55 0.00 0.00 4.00
191 192 4.595538 GACGTCACGCCACACCCA 62.596 66.667 11.55 0.00 0.00 4.51
193 194 4.595538 TGGACGTCACGCCACACC 62.596 66.667 18.91 0.00 30.88 4.16
194 195 3.036084 CTGGACGTCACGCCACAC 61.036 66.667 18.91 0.00 32.04 3.82
195 196 4.293648 CCTGGACGTCACGCCACA 62.294 66.667 18.91 3.76 32.04 4.17
196 197 3.296709 ATCCTGGACGTCACGCCAC 62.297 63.158 18.91 0.00 32.04 5.01
197 198 2.994995 ATCCTGGACGTCACGCCA 60.995 61.111 18.91 12.00 33.65 5.69
198 199 2.298158 ATCATCCTGGACGTCACGCC 62.298 60.000 18.91 0.00 0.00 5.68
199 200 1.141881 ATCATCCTGGACGTCACGC 59.858 57.895 18.91 0.00 0.00 5.34
200 201 0.528466 CCATCATCCTGGACGTCACG 60.528 60.000 18.91 7.12 38.69 4.35
201 202 0.824109 TCCATCATCCTGGACGTCAC 59.176 55.000 18.91 7.49 40.43 3.67
202 203 1.114627 CTCCATCATCCTGGACGTCA 58.885 55.000 18.91 2.63 40.43 4.35
203 204 0.249657 GCTCCATCATCCTGGACGTC 60.250 60.000 7.13 7.13 40.43 4.34
204 205 0.977627 TGCTCCATCATCCTGGACGT 60.978 55.000 0.00 0.00 40.43 4.34
205 206 0.249784 CTGCTCCATCATCCTGGACG 60.250 60.000 0.00 0.00 40.43 4.79
206 207 0.835941 ACTGCTCCATCATCCTGGAC 59.164 55.000 0.00 0.00 40.43 4.02
207 208 0.835276 CACTGCTCCATCATCCTGGA 59.165 55.000 0.00 0.00 43.09 3.86
208 209 0.179026 CCACTGCTCCATCATCCTGG 60.179 60.000 0.00 0.00 37.66 4.45
209 210 0.818445 GCCACTGCTCCATCATCCTG 60.818 60.000 0.00 0.00 33.53 3.86
210 211 1.530771 GCCACTGCTCCATCATCCT 59.469 57.895 0.00 0.00 33.53 3.24
211 212 1.890979 CGCCACTGCTCCATCATCC 60.891 63.158 0.00 0.00 34.43 3.51
212 213 0.462581 TTCGCCACTGCTCCATCATC 60.463 55.000 0.00 0.00 34.43 2.92
213 214 0.035152 TTTCGCCACTGCTCCATCAT 60.035 50.000 0.00 0.00 34.43 2.45
214 215 0.674581 CTTTCGCCACTGCTCCATCA 60.675 55.000 0.00 0.00 34.43 3.07
215 216 0.674895 ACTTTCGCCACTGCTCCATC 60.675 55.000 0.00 0.00 34.43 3.51
216 217 0.613260 TACTTTCGCCACTGCTCCAT 59.387 50.000 0.00 0.00 34.43 3.41
217 218 0.394938 TTACTTTCGCCACTGCTCCA 59.605 50.000 0.00 0.00 34.43 3.86
218 219 1.079503 CTTACTTTCGCCACTGCTCC 58.920 55.000 0.00 0.00 34.43 4.70
219 220 1.996191 CTCTTACTTTCGCCACTGCTC 59.004 52.381 0.00 0.00 34.43 4.26
220 221 1.618837 TCTCTTACTTTCGCCACTGCT 59.381 47.619 0.00 0.00 34.43 4.24
221 222 1.996191 CTCTCTTACTTTCGCCACTGC 59.004 52.381 0.00 0.00 0.00 4.40
222 223 3.577649 TCTCTCTTACTTTCGCCACTG 57.422 47.619 0.00 0.00 0.00 3.66
223 224 4.281182 TCTTTCTCTCTTACTTTCGCCACT 59.719 41.667 0.00 0.00 0.00 4.00
224 225 4.557205 TCTTTCTCTCTTACTTTCGCCAC 58.443 43.478 0.00 0.00 0.00 5.01
225 226 4.866508 TCTTTCTCTCTTACTTTCGCCA 57.133 40.909 0.00 0.00 0.00 5.69
226 227 4.627900 CCTTCTTTCTCTCTTACTTTCGCC 59.372 45.833 0.00 0.00 0.00 5.54
227 228 5.471257 TCCTTCTTTCTCTCTTACTTTCGC 58.529 41.667 0.00 0.00 0.00 4.70
228 229 6.588373 CCTTCCTTCTTTCTCTCTTACTTTCG 59.412 42.308 0.00 0.00 0.00 3.46
229 230 7.672240 TCCTTCCTTCTTTCTCTCTTACTTTC 58.328 38.462 0.00 0.00 0.00 2.62
230 231 7.511028 TCTCCTTCCTTCTTTCTCTCTTACTTT 59.489 37.037 0.00 0.00 0.00 2.66
231 232 7.013834 TCTCCTTCCTTCTTTCTCTCTTACTT 58.986 38.462 0.00 0.00 0.00 2.24
232 233 6.557568 TCTCCTTCCTTCTTTCTCTCTTACT 58.442 40.000 0.00 0.00 0.00 2.24
233 234 6.661805 TCTCTCCTTCCTTCTTTCTCTCTTAC 59.338 42.308 0.00 0.00 0.00 2.34
234 235 6.795590 TCTCTCCTTCCTTCTTTCTCTCTTA 58.204 40.000 0.00 0.00 0.00 2.10
235 236 5.650283 TCTCTCCTTCCTTCTTTCTCTCTT 58.350 41.667 0.00 0.00 0.00 2.85
236 237 5.269554 TCTCTCCTTCCTTCTTTCTCTCT 57.730 43.478 0.00 0.00 0.00 3.10
237 238 5.993748 TTCTCTCCTTCCTTCTTTCTCTC 57.006 43.478 0.00 0.00 0.00 3.20
238 239 6.755542 TTTTCTCTCCTTCCTTCTTTCTCT 57.244 37.500 0.00 0.00 0.00 3.10
239 240 6.374053 CCATTTTCTCTCCTTCCTTCTTTCTC 59.626 42.308 0.00 0.00 0.00 2.87
240 241 6.044871 TCCATTTTCTCTCCTTCCTTCTTTCT 59.955 38.462 0.00 0.00 0.00 2.52
241 242 6.241645 TCCATTTTCTCTCCTTCCTTCTTTC 58.758 40.000 0.00 0.00 0.00 2.62
242 243 6.206180 TCCATTTTCTCTCCTTCCTTCTTT 57.794 37.500 0.00 0.00 0.00 2.52
243 244 5.280934 CCTCCATTTTCTCTCCTTCCTTCTT 60.281 44.000 0.00 0.00 0.00 2.52
244 245 4.227073 CCTCCATTTTCTCTCCTTCCTTCT 59.773 45.833 0.00 0.00 0.00 2.85
245 246 4.522114 CCTCCATTTTCTCTCCTTCCTTC 58.478 47.826 0.00 0.00 0.00 3.46
246 247 3.308760 GCCTCCATTTTCTCTCCTTCCTT 60.309 47.826 0.00 0.00 0.00 3.36
247 248 2.240921 GCCTCCATTTTCTCTCCTTCCT 59.759 50.000 0.00 0.00 0.00 3.36
248 249 2.649190 GCCTCCATTTTCTCTCCTTCC 58.351 52.381 0.00 0.00 0.00 3.46
249 250 2.240921 AGGCCTCCATTTTCTCTCCTTC 59.759 50.000 0.00 0.00 0.00 3.46
250 251 2.282900 AGGCCTCCATTTTCTCTCCTT 58.717 47.619 0.00 0.00 0.00 3.36
251 252 1.978361 AGGCCTCCATTTTCTCTCCT 58.022 50.000 0.00 0.00 0.00 3.69
252 253 2.483889 CGTAGGCCTCCATTTTCTCTCC 60.484 54.545 9.68 0.00 0.00 3.71
253 254 2.168728 ACGTAGGCCTCCATTTTCTCTC 59.831 50.000 9.68 0.00 0.00 3.20
254 255 2.093447 CACGTAGGCCTCCATTTTCTCT 60.093 50.000 9.68 0.00 0.00 3.10
255 256 2.280628 CACGTAGGCCTCCATTTTCTC 58.719 52.381 9.68 0.00 0.00 2.87
256 257 1.065418 CCACGTAGGCCTCCATTTTCT 60.065 52.381 9.68 0.00 0.00 2.52
257 258 1.339727 ACCACGTAGGCCTCCATTTTC 60.340 52.381 9.68 0.00 43.14 2.29
258 259 0.696501 ACCACGTAGGCCTCCATTTT 59.303 50.000 9.68 0.00 43.14 1.82
259 260 0.696501 AACCACGTAGGCCTCCATTT 59.303 50.000 9.68 0.00 43.14 2.32
260 261 0.035439 CAACCACGTAGGCCTCCATT 60.035 55.000 9.68 0.00 43.14 3.16
261 262 1.198759 ACAACCACGTAGGCCTCCAT 61.199 55.000 9.68 0.00 43.14 3.41
262 263 1.412453 AACAACCACGTAGGCCTCCA 61.412 55.000 9.68 0.00 43.14 3.86
269 270 0.032403 TCCGGACAACAACCACGTAG 59.968 55.000 0.00 0.00 0.00 3.51
340 341 0.599991 TCAATCCGCCGATCAATCCG 60.600 55.000 0.00 0.00 0.00 4.18
341 342 1.813513 ATCAATCCGCCGATCAATCC 58.186 50.000 0.00 0.00 0.00 3.01
344 345 1.604438 CCGTATCAATCCGCCGATCAA 60.604 52.381 0.00 0.00 0.00 2.57
347 348 0.038526 GTCCGTATCAATCCGCCGAT 60.039 55.000 0.00 0.00 0.00 4.18
357 358 1.145156 CCAATGCGGGTCCGTATCA 59.855 57.895 12.95 2.37 43.41 2.15
369 370 0.737019 CACGGTTTGCCATCCAATGC 60.737 55.000 0.00 0.00 32.49 3.56
372 373 1.175983 GGACACGGTTTGCCATCCAA 61.176 55.000 0.00 0.00 33.43 3.53
375 376 2.867472 CGGACACGGTTTGCCATC 59.133 61.111 0.00 0.00 36.18 3.51
394 395 3.673338 CGCATATGTTCGGATCGTATTGT 59.327 43.478 4.29 0.00 0.00 2.71
404 405 0.105224 TACCACCCGCATATGTTCGG 59.895 55.000 13.16 13.16 44.89 4.30
410 411 1.469335 CCCTCGTACCACCCGCATAT 61.469 60.000 0.00 0.00 0.00 1.78
415 416 3.818787 CGACCCTCGTACCACCCG 61.819 72.222 0.00 0.00 34.72 5.28
416 417 3.455469 CCGACCCTCGTACCACCC 61.455 72.222 0.00 0.00 38.40 4.61
451 452 1.412710 ACGTGGCACTCCTATATGTGG 59.587 52.381 16.72 0.00 34.99 4.17
452 453 2.100749 TGACGTGGCACTCCTATATGTG 59.899 50.000 16.72 0.00 37.26 3.21
455 456 1.687123 GGTGACGTGGCACTCCTATAT 59.313 52.381 16.72 0.00 38.78 0.86
456 457 1.108776 GGTGACGTGGCACTCCTATA 58.891 55.000 16.72 0.00 38.78 1.31
457 458 0.614979 AGGTGACGTGGCACTCCTAT 60.615 55.000 16.72 0.00 38.78 2.57
458 459 1.228769 AGGTGACGTGGCACTCCTA 60.229 57.895 16.72 0.00 38.78 2.94
467 468 0.173481 ACGATGGATCAGGTGACGTG 59.827 55.000 0.00 0.00 0.00 4.49
534 535 1.219393 GCTCTAGTGGGTGGTGAGC 59.781 63.158 0.00 0.00 42.31 4.26
538 539 0.762842 TGTGTGCTCTAGTGGGTGGT 60.763 55.000 0.00 0.00 0.00 4.16
540 541 0.681733 ACTGTGTGCTCTAGTGGGTG 59.318 55.000 0.00 0.00 0.00 4.61
541 542 0.969894 GACTGTGTGCTCTAGTGGGT 59.030 55.000 1.90 0.00 0.00 4.51
550 551 2.920645 CGAGACCGGACTGTGTGCT 61.921 63.158 12.23 0.00 0.00 4.40
551 552 2.430921 CGAGACCGGACTGTGTGC 60.431 66.667 12.23 0.00 0.00 4.57
604 605 2.876645 CGCACGTCTCGCTCTTCC 60.877 66.667 0.00 0.00 0.00 3.46
635 661 3.843240 GGCTTTGACGAGCGAGCG 61.843 66.667 0.00 0.00 43.62 5.03
667 693 3.758554 CGGGGAAAATGAAGTGAAGACAT 59.241 43.478 0.00 0.00 0.00 3.06
800 826 3.130633 TGGCGCTGTTTATATAGCTGTG 58.869 45.455 7.64 0.02 36.45 3.66
803 829 2.417719 GCTGGCGCTGTTTATATAGCT 58.582 47.619 7.64 0.00 36.45 3.32
886 926 1.449246 GCTAGTGGCAGCAGACAGG 60.449 63.158 0.00 0.00 41.40 4.00
940 980 1.507141 CTGTGTGTCCTGAAACGGGC 61.507 60.000 0.00 0.00 0.00 6.13
985 1025 3.554692 CATGTCTTCCGCGGCGAC 61.555 66.667 29.10 29.10 0.00 5.19
1162 1224 2.284995 GAGGGTGAGGAGCAGGGT 60.285 66.667 0.00 0.00 0.00 4.34
1620 1691 1.136828 AACTGGTGGTGCTGAGGTAA 58.863 50.000 0.00 0.00 0.00 2.85
1680 1751 1.745489 GAACATGGGGAGCGTCCAC 60.745 63.158 0.00 3.32 41.45 4.02
1779 1850 2.758327 ATGGCGCGGTAGACCTCA 60.758 61.111 8.83 0.00 0.00 3.86
2655 2747 1.021920 GCTTCCCCTTCGTCTTCTGC 61.022 60.000 0.00 0.00 0.00 4.26
2815 2907 1.688793 TCAAACCGTACGACATCACG 58.311 50.000 18.76 0.00 37.89 4.35
2852 2951 3.577649 ACACACGTAGACCTCTTCATG 57.422 47.619 0.00 0.00 0.00 3.07
2855 2954 2.035576 ACCAACACACGTAGACCTCTTC 59.964 50.000 0.00 0.00 0.00 2.87
2879 2979 3.995048 GTGCCAAGTTCCTACTGTACTTC 59.005 47.826 0.00 0.00 34.01 3.01
2884 2984 1.136828 TGGTGCCAAGTTCCTACTGT 58.863 50.000 0.00 0.00 34.01 3.55
2885 2985 2.086869 CATGGTGCCAAGTTCCTACTG 58.913 52.381 0.00 0.00 34.01 2.74
2886 2986 1.614317 GCATGGTGCCAAGTTCCTACT 60.614 52.381 0.00 0.00 37.42 2.57
2957 3057 3.750652 GCTTTTCACAGCTAGCTCTCTTT 59.249 43.478 16.15 0.00 36.79 2.52
2968 3068 6.917217 ATACAGAATAGAGCTTTTCACAGC 57.083 37.500 0.00 0.00 40.44 4.40
2969 3069 8.417106 TCCTATACAGAATAGAGCTTTTCACAG 58.583 37.037 0.00 0.00 40.16 3.66
2970 3070 8.306313 TCCTATACAGAATAGAGCTTTTCACA 57.694 34.615 0.00 0.00 40.16 3.58
2971 3071 9.202273 CATCCTATACAGAATAGAGCTTTTCAC 57.798 37.037 0.00 0.00 40.16 3.18
2972 3072 9.147732 TCATCCTATACAGAATAGAGCTTTTCA 57.852 33.333 0.00 0.00 40.16 2.69
2973 3073 9.988815 TTCATCCTATACAGAATAGAGCTTTTC 57.011 33.333 0.00 0.00 40.16 2.29
3056 3158 9.485206 AAAGTTCCAATTGATCATCAGAAAAAG 57.515 29.630 7.12 0.00 0.00 2.27
3148 3250 6.790232 AGGATTTGAAACCTGTCTCAAAAA 57.210 33.333 3.15 0.00 42.96 1.94
3149 3251 6.607198 AGAAGGATTTGAAACCTGTCTCAAAA 59.393 34.615 3.15 0.00 42.96 2.44
3150 3252 6.039717 CAGAAGGATTTGAAACCTGTCTCAAA 59.960 38.462 1.61 1.61 43.63 2.69
3151 3253 5.532406 CAGAAGGATTTGAAACCTGTCTCAA 59.468 40.000 0.00 0.00 36.56 3.02
3152 3254 5.065914 CAGAAGGATTTGAAACCTGTCTCA 58.934 41.667 0.00 0.00 36.56 3.27
3153 3255 5.066593 ACAGAAGGATTTGAAACCTGTCTC 58.933 41.667 0.00 0.00 36.56 3.36
3154 3256 5.053978 ACAGAAGGATTTGAAACCTGTCT 57.946 39.130 0.00 0.00 36.56 3.41
3155 3257 6.568653 GCTTACAGAAGGATTTGAAACCTGTC 60.569 42.308 0.00 0.00 36.56 3.51
3156 3258 5.241728 GCTTACAGAAGGATTTGAAACCTGT 59.758 40.000 0.00 0.00 36.56 4.00
3157 3259 5.241506 TGCTTACAGAAGGATTTGAAACCTG 59.758 40.000 0.00 0.00 36.56 4.00
3158 3260 5.241728 GTGCTTACAGAAGGATTTGAAACCT 59.758 40.000 0.00 0.00 35.24 3.50
3159 3261 5.241728 AGTGCTTACAGAAGGATTTGAAACC 59.758 40.000 0.00 0.00 35.24 3.27
3162 3264 7.719633 AGTTAAGTGCTTACAGAAGGATTTGAA 59.280 33.333 0.00 0.00 34.52 2.69
3169 3271 6.371825 CCCTTTAGTTAAGTGCTTACAGAAGG 59.628 42.308 0.00 11.54 30.83 3.46
3189 3291 3.246167 ACTGAGATCTAGTCACCCCCTTT 60.246 47.826 0.00 0.00 0.00 3.11
3194 3296 2.920524 TCGACTGAGATCTAGTCACCC 58.079 52.381 21.75 2.05 43.65 4.61
3195 3297 5.508200 AAATCGACTGAGATCTAGTCACC 57.492 43.478 21.75 2.63 43.65 4.02
3196 3298 6.913673 GGTTAAATCGACTGAGATCTAGTCAC 59.086 42.308 21.75 14.85 43.65 3.67
3197 3299 6.602009 TGGTTAAATCGACTGAGATCTAGTCA 59.398 38.462 21.75 14.12 43.65 3.41
3199 3301 7.122948 ACTTGGTTAAATCGACTGAGATCTAGT 59.877 37.037 0.00 0.00 0.00 2.57
3200 3302 7.484975 ACTTGGTTAAATCGACTGAGATCTAG 58.515 38.462 0.00 0.00 0.00 2.43
3201 3303 7.406031 ACTTGGTTAAATCGACTGAGATCTA 57.594 36.000 0.00 0.00 0.00 1.98
3202 3304 6.287589 ACTTGGTTAAATCGACTGAGATCT 57.712 37.500 0.00 0.00 0.00 2.75
3203 3305 5.520649 GGACTTGGTTAAATCGACTGAGATC 59.479 44.000 0.00 0.00 0.00 2.75
3205 3307 4.322499 GGGACTTGGTTAAATCGACTGAGA 60.322 45.833 0.00 0.00 0.00 3.27
3206 3308 3.933332 GGGACTTGGTTAAATCGACTGAG 59.067 47.826 0.00 0.00 0.00 3.35
3207 3309 3.325425 TGGGACTTGGTTAAATCGACTGA 59.675 43.478 0.00 0.00 0.00 3.41
3208 3310 3.670625 TGGGACTTGGTTAAATCGACTG 58.329 45.455 0.00 0.00 0.00 3.51
3209 3311 3.326880 ACTGGGACTTGGTTAAATCGACT 59.673 43.478 0.00 0.00 0.00 4.18
3210 3312 3.671716 ACTGGGACTTGGTTAAATCGAC 58.328 45.455 0.00 0.00 0.00 4.20
3211 3313 3.325425 TGACTGGGACTTGGTTAAATCGA 59.675 43.478 0.00 0.00 0.00 3.59
3212 3314 3.670625 TGACTGGGACTTGGTTAAATCG 58.329 45.455 0.00 0.00 0.00 3.34
3213 3315 5.048713 CACTTGACTGGGACTTGGTTAAATC 60.049 44.000 0.00 0.00 0.00 2.17
3214 3316 4.827284 CACTTGACTGGGACTTGGTTAAAT 59.173 41.667 0.00 0.00 0.00 1.40
3215 3317 4.080243 TCACTTGACTGGGACTTGGTTAAA 60.080 41.667 0.00 0.00 0.00 1.52
3216 3318 3.456644 TCACTTGACTGGGACTTGGTTAA 59.543 43.478 0.00 0.00 0.00 2.01
3217 3319 3.042682 TCACTTGACTGGGACTTGGTTA 58.957 45.455 0.00 0.00 0.00 2.85
3218 3320 1.843851 TCACTTGACTGGGACTTGGTT 59.156 47.619 0.00 0.00 0.00 3.67
3219 3321 1.141053 GTCACTTGACTGGGACTTGGT 59.859 52.381 1.92 0.00 41.65 3.67
3220 3322 1.140852 TGTCACTTGACTGGGACTTGG 59.859 52.381 10.63 0.00 44.99 3.61
3221 3323 2.620251 TGTCACTTGACTGGGACTTG 57.380 50.000 10.63 0.00 44.99 3.16
3222 3324 4.974645 TTATGTCACTTGACTGGGACTT 57.025 40.909 10.63 0.00 44.99 3.01
3223 3325 6.586344 CATATTATGTCACTTGACTGGGACT 58.414 40.000 10.63 0.00 44.99 3.85
3224 3326 5.237344 GCATATTATGTCACTTGACTGGGAC 59.763 44.000 10.63 0.00 44.99 4.46
3225 3327 5.104569 TGCATATTATGTCACTTGACTGGGA 60.105 40.000 10.63 0.00 44.99 4.37
3226 3328 5.125356 TGCATATTATGTCACTTGACTGGG 58.875 41.667 10.63 0.00 44.99 4.45
3227 3329 6.539826 TCTTGCATATTATGTCACTTGACTGG 59.460 38.462 10.63 0.00 44.99 4.00
3228 3330 7.493645 TCTCTTGCATATTATGTCACTTGACTG 59.506 37.037 10.63 1.04 44.99 3.51
3229 3331 7.559486 TCTCTTGCATATTATGTCACTTGACT 58.441 34.615 10.63 0.00 44.99 3.41
3230 3332 7.708322 TCTCTCTTGCATATTATGTCACTTGAC 59.292 37.037 2.19 2.19 44.97 3.18
3231 3333 7.785033 TCTCTCTTGCATATTATGTCACTTGA 58.215 34.615 5.60 3.13 0.00 3.02
3232 3334 8.429493 TTCTCTCTTGCATATTATGTCACTTG 57.571 34.615 5.60 0.00 0.00 3.16
3233 3335 9.453572 TTTTCTCTCTTGCATATTATGTCACTT 57.546 29.630 5.60 0.00 0.00 3.16
3234 3336 9.107177 CTTTTCTCTCTTGCATATTATGTCACT 57.893 33.333 5.60 0.00 0.00 3.41
3235 3337 9.102757 TCTTTTCTCTCTTGCATATTATGTCAC 57.897 33.333 5.60 0.00 0.00 3.67
3236 3338 9.671279 TTCTTTTCTCTCTTGCATATTATGTCA 57.329 29.630 5.60 1.95 0.00 3.58
3282 3384 6.439599 CGTGAGATCCTACATTAAGATTCGT 58.560 40.000 0.00 0.00 0.00 3.85
3284 3386 6.982852 TCCGTGAGATCCTACATTAAGATTC 58.017 40.000 0.00 0.00 0.00 2.52
3288 3390 8.132362 GCTATATCCGTGAGATCCTACATTAAG 58.868 40.741 0.00 0.00 36.33 1.85
3289 3391 7.614192 TGCTATATCCGTGAGATCCTACATTAA 59.386 37.037 0.00 0.00 36.33 1.40
3290 3392 7.116736 TGCTATATCCGTGAGATCCTACATTA 58.883 38.462 0.00 0.00 36.33 1.90
3291 3393 5.952347 TGCTATATCCGTGAGATCCTACATT 59.048 40.000 0.00 0.00 36.33 2.71
3293 3395 4.918588 TGCTATATCCGTGAGATCCTACA 58.081 43.478 0.00 0.00 36.33 2.74
3294 3396 5.277586 CGATGCTATATCCGTGAGATCCTAC 60.278 48.000 0.00 0.00 36.33 3.18
3295 3397 4.816925 CGATGCTATATCCGTGAGATCCTA 59.183 45.833 0.00 0.00 36.33 2.94
3296 3398 3.629855 CGATGCTATATCCGTGAGATCCT 59.370 47.826 0.00 0.00 36.33 3.24
3297 3399 3.628032 TCGATGCTATATCCGTGAGATCC 59.372 47.826 0.00 0.00 36.33 3.36
3299 3401 4.095632 CAGTCGATGCTATATCCGTGAGAT 59.904 45.833 0.00 0.00 39.15 2.75
3300 3402 3.437049 CAGTCGATGCTATATCCGTGAGA 59.563 47.826 0.00 0.00 0.00 3.27
3301 3403 3.437049 TCAGTCGATGCTATATCCGTGAG 59.563 47.826 0.00 0.00 0.00 3.51
3302 3404 3.408634 TCAGTCGATGCTATATCCGTGA 58.591 45.455 0.00 0.00 0.00 4.35
3305 3407 3.687212 AGTCTCAGTCGATGCTATATCCG 59.313 47.826 0.00 0.00 0.00 4.18
3306 3408 5.637006 AAGTCTCAGTCGATGCTATATCC 57.363 43.478 0.00 0.00 0.00 2.59
3309 3411 6.937436 TGTTAAGTCTCAGTCGATGCTATA 57.063 37.500 0.00 0.00 0.00 1.31
3310 3412 5.836821 TGTTAAGTCTCAGTCGATGCTAT 57.163 39.130 0.00 0.00 0.00 2.97
3313 3415 4.686554 ACTTTGTTAAGTCTCAGTCGATGC 59.313 41.667 0.00 0.00 40.60 3.91
3315 3417 6.144080 CGAAACTTTGTTAAGTCTCAGTCGAT 59.856 38.462 0.00 0.00 43.74 3.59
3316 3418 5.457799 CGAAACTTTGTTAAGTCTCAGTCGA 59.542 40.000 0.00 0.00 43.74 4.20
3318 3420 5.522824 ACCGAAACTTTGTTAAGTCTCAGTC 59.477 40.000 0.00 0.00 43.74 3.51
3319 3421 5.425630 ACCGAAACTTTGTTAAGTCTCAGT 58.574 37.500 0.00 0.00 43.74 3.41
3320 3422 5.332355 CGACCGAAACTTTGTTAAGTCTCAG 60.332 44.000 0.00 0.00 43.74 3.35
3321 3423 4.505191 CGACCGAAACTTTGTTAAGTCTCA 59.495 41.667 0.00 0.00 43.74 3.27
3322 3424 4.741676 TCGACCGAAACTTTGTTAAGTCTC 59.258 41.667 0.00 0.00 43.74 3.36
3323 3425 4.505556 GTCGACCGAAACTTTGTTAAGTCT 59.494 41.667 3.51 0.00 43.74 3.24
3324 3426 4.505556 AGTCGACCGAAACTTTGTTAAGTC 59.494 41.667 13.01 0.00 43.74 3.01
3325 3427 4.436332 AGTCGACCGAAACTTTGTTAAGT 58.564 39.130 13.01 0.00 46.44 2.24
3326 3428 6.418819 TCTTAGTCGACCGAAACTTTGTTAAG 59.581 38.462 13.01 8.92 37.40 1.85
3328 3430 5.687285 GTCTTAGTCGACCGAAACTTTGTTA 59.313 40.000 13.01 0.00 0.00 2.41
3329 3431 4.505556 GTCTTAGTCGACCGAAACTTTGTT 59.494 41.667 13.01 0.00 0.00 2.83
3330 3432 4.047142 GTCTTAGTCGACCGAAACTTTGT 58.953 43.478 13.01 0.00 0.00 2.83
3331 3433 4.296690 AGTCTTAGTCGACCGAAACTTTG 58.703 43.478 13.01 0.00 34.46 2.77
3332 3434 4.581077 AGTCTTAGTCGACCGAAACTTT 57.419 40.909 13.01 0.00 34.46 2.66
3333 3435 4.581077 AAGTCTTAGTCGACCGAAACTT 57.419 40.909 13.01 14.03 34.46 2.66
3334 3436 4.379290 GCTAAGTCTTAGTCGACCGAAACT 60.379 45.833 18.72 8.61 35.66 2.66
3335 3437 3.850837 GCTAAGTCTTAGTCGACCGAAAC 59.149 47.826 18.72 6.30 35.66 2.78
3336 3438 3.503363 TGCTAAGTCTTAGTCGACCGAAA 59.497 43.478 18.72 3.66 35.66 3.46
3337 3439 3.076621 TGCTAAGTCTTAGTCGACCGAA 58.923 45.455 18.72 6.12 35.66 4.30
3338 3440 2.703416 TGCTAAGTCTTAGTCGACCGA 58.297 47.619 18.72 3.70 35.66 4.69
3339 3441 3.126514 TCTTGCTAAGTCTTAGTCGACCG 59.873 47.826 18.72 0.99 35.66 4.79
3340 3442 4.156373 AGTCTTGCTAAGTCTTAGTCGACC 59.844 45.833 18.72 4.76 35.66 4.79
3341 3443 5.090083 CAGTCTTGCTAAGTCTTAGTCGAC 58.910 45.833 18.72 19.15 35.66 4.20
3342 3444 4.760715 ACAGTCTTGCTAAGTCTTAGTCGA 59.239 41.667 18.72 10.96 35.66 4.20
3343 3445 5.049398 ACAGTCTTGCTAAGTCTTAGTCG 57.951 43.478 18.72 9.18 35.66 4.18
3344 3446 8.083462 AGTTAACAGTCTTGCTAAGTCTTAGTC 58.917 37.037 18.72 12.37 35.66 2.59
3345 3447 7.868415 CAGTTAACAGTCTTGCTAAGTCTTAGT 59.132 37.037 18.72 1.22 35.66 2.24
3346 3448 8.082852 TCAGTTAACAGTCTTGCTAAGTCTTAG 58.917 37.037 14.35 14.35 36.32 2.18
3348 3450 6.817184 TCAGTTAACAGTCTTGCTAAGTCTT 58.183 36.000 8.61 0.00 0.00 3.01
3350 3452 7.224949 ACTTTCAGTTAACAGTCTTGCTAAGTC 59.775 37.037 8.61 0.00 0.00 3.01
3352 3454 7.439655 AGACTTTCAGTTAACAGTCTTGCTAAG 59.560 37.037 16.59 10.55 42.79 2.18
3353 3455 7.224753 CAGACTTTCAGTTAACAGTCTTGCTAA 59.775 37.037 18.72 2.86 42.79 3.09
3354 3456 6.701841 CAGACTTTCAGTTAACAGTCTTGCTA 59.298 38.462 18.72 0.00 42.79 3.49
3356 3458 5.742446 CAGACTTTCAGTTAACAGTCTTGC 58.258 41.667 18.72 1.06 42.79 4.01
3357 3459 5.525378 AGCAGACTTTCAGTTAACAGTCTTG 59.475 40.000 18.72 15.54 42.79 3.02
3358 3460 5.675538 AGCAGACTTTCAGTTAACAGTCTT 58.324 37.500 18.72 7.54 42.79 3.01
3360 3462 6.868864 TCATAGCAGACTTTCAGTTAACAGTC 59.131 38.462 13.34 13.34 36.66 3.51
3361 3463 6.759272 TCATAGCAGACTTTCAGTTAACAGT 58.241 36.000 8.61 2.00 0.00 3.55
3363 3465 7.547019 CAGATCATAGCAGACTTTCAGTTAACA 59.453 37.037 8.61 0.00 0.00 2.41
3364 3466 7.465245 GCAGATCATAGCAGACTTTCAGTTAAC 60.465 40.741 0.00 0.00 0.00 2.01
3365 3467 6.536582 GCAGATCATAGCAGACTTTCAGTTAA 59.463 38.462 0.00 0.00 0.00 2.01
3370 3592 3.432749 GGGCAGATCATAGCAGACTTTCA 60.433 47.826 0.00 0.00 0.00 2.69
3380 3602 0.324285 GCAGAGGGGGCAGATCATAG 59.676 60.000 0.00 0.00 0.00 2.23
3433 3655 5.339990 CAAATGGAACCTAACGGCTTAATG 58.660 41.667 0.00 0.00 0.00 1.90
3447 3777 4.295051 ACATGTTTACACGCAAATGGAAC 58.705 39.130 0.00 0.00 0.00 3.62
3469 3799 8.832521 CATTTTAATAAGACTTGTATGGCCGTA 58.167 33.333 0.00 0.00 0.00 4.02
3496 3826 3.009695 CAGTGGGGGTGGTTACTTGATAA 59.990 47.826 0.00 0.00 0.00 1.75
3497 3827 2.574369 CAGTGGGGGTGGTTACTTGATA 59.426 50.000 0.00 0.00 0.00 2.15
3503 3833 0.604511 CGTTCAGTGGGGGTGGTTAC 60.605 60.000 0.00 0.00 0.00 2.50
3509 3839 2.366153 AAATGGCGTTCAGTGGGGGT 62.366 55.000 0.00 0.00 0.00 4.95
3511 3841 0.243636 GAAAATGGCGTTCAGTGGGG 59.756 55.000 0.00 0.00 0.00 4.96
3551 3917 4.517075 GGGAGATAGTAATTTCTGGCAAGC 59.483 45.833 0.00 0.00 0.00 4.01
3574 3940 0.782384 GCGTAAACCGTGTGAGAGTG 59.218 55.000 0.00 0.00 39.32 3.51
3673 4039 9.765295 TTTCTAGTACTCCCTCTGTAAACTAAT 57.235 33.333 0.00 0.00 0.00 1.73
3674 4040 9.240734 CTTTCTAGTACTCCCTCTGTAAACTAA 57.759 37.037 0.00 0.00 0.00 2.24
3675 4041 7.833183 CCTTTCTAGTACTCCCTCTGTAAACTA 59.167 40.741 0.00 0.00 0.00 2.24
3676 4042 6.664384 CCTTTCTAGTACTCCCTCTGTAAACT 59.336 42.308 0.00 0.00 0.00 2.66
3677 4043 6.662663 TCCTTTCTAGTACTCCCTCTGTAAAC 59.337 42.308 0.00 0.00 0.00 2.01
3678 4044 6.662663 GTCCTTTCTAGTACTCCCTCTGTAAA 59.337 42.308 0.00 0.00 0.00 2.01
3679 4045 6.186234 GTCCTTTCTAGTACTCCCTCTGTAA 58.814 44.000 0.00 0.00 0.00 2.41
3680 4046 5.252397 TGTCCTTTCTAGTACTCCCTCTGTA 59.748 44.000 0.00 0.00 0.00 2.74
3681 4047 4.044317 TGTCCTTTCTAGTACTCCCTCTGT 59.956 45.833 0.00 0.00 0.00 3.41
3682 4048 4.399934 GTGTCCTTTCTAGTACTCCCTCTG 59.600 50.000 0.00 0.00 0.00 3.35
3683 4049 4.602107 GTGTCCTTTCTAGTACTCCCTCT 58.398 47.826 0.00 0.00 0.00 3.69
3684 4050 3.377798 CGTGTCCTTTCTAGTACTCCCTC 59.622 52.174 0.00 0.00 0.00 4.30
3685 4051 3.009916 TCGTGTCCTTTCTAGTACTCCCT 59.990 47.826 0.00 0.00 0.00 4.20
3686 4052 3.350833 TCGTGTCCTTTCTAGTACTCCC 58.649 50.000 0.00 0.00 0.00 4.30
3687 4053 3.377798 CCTCGTGTCCTTTCTAGTACTCC 59.622 52.174 0.00 0.00 0.00 3.85
3688 4054 4.260170 TCCTCGTGTCCTTTCTAGTACTC 58.740 47.826 0.00 0.00 0.00 2.59
3689 4055 4.298103 TCCTCGTGTCCTTTCTAGTACT 57.702 45.455 0.00 0.00 0.00 2.73
3690 4056 6.880942 ATATCCTCGTGTCCTTTCTAGTAC 57.119 41.667 0.00 0.00 0.00 2.73
3691 4057 6.204301 CGAATATCCTCGTGTCCTTTCTAGTA 59.796 42.308 0.00 0.00 34.08 1.82
3692 4058 5.008811 CGAATATCCTCGTGTCCTTTCTAGT 59.991 44.000 0.00 0.00 34.08 2.57
3693 4059 5.453648 CGAATATCCTCGTGTCCTTTCTAG 58.546 45.833 0.00 0.00 34.08 2.43
3694 4060 5.434352 CGAATATCCTCGTGTCCTTTCTA 57.566 43.478 0.00 0.00 34.08 2.10
3695 4061 4.308899 CGAATATCCTCGTGTCCTTTCT 57.691 45.455 0.00 0.00 34.08 2.52
3705 4071 3.566322 ACTCTTCTCCACGAATATCCTCG 59.434 47.826 0.00 0.00 44.50 4.63
3706 4072 4.580995 TCACTCTTCTCCACGAATATCCTC 59.419 45.833 0.00 0.00 0.00 3.71
3707 4073 4.339814 GTCACTCTTCTCCACGAATATCCT 59.660 45.833 0.00 0.00 0.00 3.24
3708 4074 4.098044 TGTCACTCTTCTCCACGAATATCC 59.902 45.833 0.00 0.00 0.00 2.59
3709 4075 5.250235 TGTCACTCTTCTCCACGAATATC 57.750 43.478 0.00 0.00 0.00 1.63
3710 4076 5.419155 TCTTGTCACTCTTCTCCACGAATAT 59.581 40.000 0.00 0.00 0.00 1.28
3711 4077 4.765339 TCTTGTCACTCTTCTCCACGAATA 59.235 41.667 0.00 0.00 0.00 1.75
3712 4078 3.574396 TCTTGTCACTCTTCTCCACGAAT 59.426 43.478 0.00 0.00 0.00 3.34
3713 4079 2.956333 TCTTGTCACTCTTCTCCACGAA 59.044 45.455 0.00 0.00 0.00 3.85
3714 4080 2.554462 CTCTTGTCACTCTTCTCCACGA 59.446 50.000 0.00 0.00 0.00 4.35
3715 4081 2.924454 GCTCTTGTCACTCTTCTCCACG 60.924 54.545 0.00 0.00 0.00 4.94
3716 4082 2.298729 AGCTCTTGTCACTCTTCTCCAC 59.701 50.000 0.00 0.00 0.00 4.02
3717 4083 2.560542 GAGCTCTTGTCACTCTTCTCCA 59.439 50.000 6.43 0.00 0.00 3.86
3718 4084 2.825532 AGAGCTCTTGTCACTCTTCTCC 59.174 50.000 11.45 0.00 37.50 3.71
3719 4085 3.426159 CGAGAGCTCTTGTCACTCTTCTC 60.426 52.174 19.36 0.00 40.80 2.87
3720 4086 2.487762 CGAGAGCTCTTGTCACTCTTCT 59.512 50.000 19.36 0.00 40.80 2.85
3721 4087 2.227865 ACGAGAGCTCTTGTCACTCTTC 59.772 50.000 27.99 6.51 40.80 2.87
3722 4088 2.030363 CACGAGAGCTCTTGTCACTCTT 60.030 50.000 30.28 7.83 40.80 2.85
3723 4089 1.539388 CACGAGAGCTCTTGTCACTCT 59.461 52.381 30.28 8.55 43.35 3.24
3724 4090 1.537638 TCACGAGAGCTCTTGTCACTC 59.462 52.381 30.28 9.98 38.50 3.51
3725 4091 1.610363 TCACGAGAGCTCTTGTCACT 58.390 50.000 30.28 9.65 38.50 3.41
3726 4092 2.645730 ATCACGAGAGCTCTTGTCAC 57.354 50.000 30.28 11.19 38.50 3.67
3727 4093 2.822561 AGAATCACGAGAGCTCTTGTCA 59.177 45.455 30.28 21.41 38.50 3.58
3728 4094 3.434637 GAGAATCACGAGAGCTCTTGTC 58.565 50.000 30.28 20.01 38.50 3.18
3729 4095 2.159448 CGAGAATCACGAGAGCTCTTGT 60.159 50.000 27.99 27.99 41.13 3.16
3730 4096 2.159448 ACGAGAATCACGAGAGCTCTTG 60.159 50.000 26.64 26.64 33.17 3.02
3731 4097 2.088423 ACGAGAATCACGAGAGCTCTT 58.912 47.619 19.36 0.00 33.17 2.85
3732 4098 1.745232 ACGAGAATCACGAGAGCTCT 58.255 50.000 18.28 18.28 33.17 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.