Multiple sequence alignment - TraesCS5A01G496000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G496000 chr5A 100.000 2798 0 0 1 2798 663619208 663616411 0.000000e+00 5168.0
1 TraesCS5A01G496000 chr5A 94.737 38 2 0 1996 2033 378448000 378448037 3.010000e-05 60.2
2 TraesCS5A01G496000 chr5A 96.875 32 1 0 2285 2316 482485992 482486023 1.000000e-03 54.7
3 TraesCS5A01G496000 chr4D 90.385 1040 69 18 1289 2318 483530816 483529798 0.000000e+00 1338.0
4 TraesCS5A01G496000 chr4D 91.300 908 65 10 1289 2188 483560688 483559787 0.000000e+00 1227.0
5 TraesCS5A01G496000 chr4D 90.168 773 33 15 740 1492 483587169 483586420 0.000000e+00 966.0
6 TraesCS5A01G496000 chr4D 87.329 292 29 3 2318 2605 87796258 87795971 7.470000e-86 327.0
7 TraesCS5A01G496000 chr4D 94.241 191 11 0 2606 2796 483559582 483559392 2.730000e-75 292.0
8 TraesCS5A01G496000 chr4D 93.194 191 13 0 2606 2796 483529795 483529605 5.900000e-72 281.0
9 TraesCS5A01G496000 chr1D 91.481 810 66 1 1004 1813 459816558 459817364 0.000000e+00 1110.0
10 TraesCS5A01G496000 chr1D 88.494 591 62 6 11 597 469123128 469122540 0.000000e+00 710.0
11 TraesCS5A01G496000 chr1D 86.644 292 30 3 2318 2604 216847275 216846988 5.820000e-82 315.0
12 TraesCS5A01G496000 chr1D 89.362 47 5 0 1996 2042 7756994 7756948 3.010000e-05 60.2
13 TraesCS5A01G496000 chr1B 90.715 797 74 0 1004 1800 631826931 631826135 0.000000e+00 1062.0
14 TraesCS5A01G496000 chr1B 88.560 778 74 3 1022 1798 641684285 641683522 0.000000e+00 929.0
15 TraesCS5A01G496000 chr3D 87.925 588 68 3 13 597 67532902 67533489 0.000000e+00 689.0
16 TraesCS5A01G496000 chr3D 86.689 293 28 4 2318 2605 338169729 338169443 5.820000e-82 315.0
17 TraesCS5A01G496000 chr3D 86.760 287 30 3 2318 2600 347498377 347498659 2.090000e-81 313.0
18 TraesCS5A01G496000 chr3D 86.348 293 31 5 2318 2605 273862843 273862555 7.530000e-81 311.0
19 TraesCS5A01G496000 chr2D 84.181 708 103 9 3 704 293057683 293056979 0.000000e+00 678.0
20 TraesCS5A01G496000 chr2D 85.624 633 82 9 4 630 317873764 317874393 0.000000e+00 656.0
21 TraesCS5A01G496000 chr6D 88.225 569 62 4 4 569 9021490 9020924 0.000000e+00 675.0
22 TraesCS5A01G496000 chr6D 86.780 295 28 5 2318 2605 285445537 285445827 4.500000e-83 318.0
23 TraesCS5A01G496000 chr6D 100.000 32 0 0 2287 2318 459354063 459354032 3.010000e-05 60.2
24 TraesCS5A01G496000 chr5B 87.394 587 70 4 13 597 321982699 321983283 0.000000e+00 671.0
25 TraesCS5A01G496000 chr5B 86.482 614 76 6 4 610 603414792 603414179 0.000000e+00 667.0
26 TraesCS5A01G496000 chr5B 82.682 179 31 0 2610 2788 56594594 56594772 2.880000e-35 159.0
27 TraesCS5A01G496000 chr5B 80.447 179 35 0 2610 2788 56829543 56829721 1.350000e-28 137.0
28 TraesCS5A01G496000 chr5B 79.348 184 32 5 2610 2788 56596286 56596468 1.050000e-24 124.0
29 TraesCS5A01G496000 chr7D 86.811 599 69 9 4 593 623783591 623782994 0.000000e+00 660.0
30 TraesCS5A01G496000 chr7D 86.942 291 29 6 2319 2605 85937083 85937368 4.500000e-83 318.0
31 TraesCS5A01G496000 chr3B 85.948 612 75 10 4 610 553050061 553049456 0.000000e+00 643.0
32 TraesCS5A01G496000 chr1A 87.031 293 27 5 2319 2605 488068323 488068610 1.250000e-83 320.0
33 TraesCS5A01G496000 chr1A 76.471 102 20 4 2215 2314 120379965 120380064 5.000000e-03 52.8
34 TraesCS5A01G496000 chr7A 86.735 294 30 3 2317 2605 403935182 403935471 4.500000e-83 318.0
35 TraesCS5A01G496000 chr2B 81.443 97 14 4 2224 2318 195678206 195678112 2.990000e-10 76.8
36 TraesCS5A01G496000 chr2A 94.444 36 2 0 2283 2318 473645487 473645522 3.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G496000 chr5A 663616411 663619208 2797 True 5168.0 5168 100.0000 1 2798 1 chr5A.!!$R1 2797
1 TraesCS5A01G496000 chr4D 483586420 483587169 749 True 966.0 966 90.1680 740 1492 1 chr4D.!!$R2 752
2 TraesCS5A01G496000 chr4D 483529605 483530816 1211 True 809.5 1338 91.7895 1289 2796 2 chr4D.!!$R3 1507
3 TraesCS5A01G496000 chr4D 483559392 483560688 1296 True 759.5 1227 92.7705 1289 2796 2 chr4D.!!$R4 1507
4 TraesCS5A01G496000 chr1D 459816558 459817364 806 False 1110.0 1110 91.4810 1004 1813 1 chr1D.!!$F1 809
5 TraesCS5A01G496000 chr1D 469122540 469123128 588 True 710.0 710 88.4940 11 597 1 chr1D.!!$R3 586
6 TraesCS5A01G496000 chr1B 631826135 631826931 796 True 1062.0 1062 90.7150 1004 1800 1 chr1B.!!$R1 796
7 TraesCS5A01G496000 chr1B 641683522 641684285 763 True 929.0 929 88.5600 1022 1798 1 chr1B.!!$R2 776
8 TraesCS5A01G496000 chr3D 67532902 67533489 587 False 689.0 689 87.9250 13 597 1 chr3D.!!$F1 584
9 TraesCS5A01G496000 chr2D 293056979 293057683 704 True 678.0 678 84.1810 3 704 1 chr2D.!!$R1 701
10 TraesCS5A01G496000 chr2D 317873764 317874393 629 False 656.0 656 85.6240 4 630 1 chr2D.!!$F1 626
11 TraesCS5A01G496000 chr6D 9020924 9021490 566 True 675.0 675 88.2250 4 569 1 chr6D.!!$R1 565
12 TraesCS5A01G496000 chr5B 321982699 321983283 584 False 671.0 671 87.3940 13 597 1 chr5B.!!$F2 584
13 TraesCS5A01G496000 chr5B 603414179 603414792 613 True 667.0 667 86.4820 4 610 1 chr5B.!!$R1 606
14 TraesCS5A01G496000 chr7D 623782994 623783591 597 True 660.0 660 86.8110 4 593 1 chr7D.!!$R1 589
15 TraesCS5A01G496000 chr3B 553049456 553050061 605 True 643.0 643 85.9480 4 610 1 chr3B.!!$R1 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 347 0.179062 CCAGCTTCAGAAGGATCCCG 60.179 60.0 8.55 0.0 0.00 5.14 F
840 858 0.249911 ACTGAAGCACGAGTTGGTCC 60.250 55.0 0.00 0.0 33.68 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 1357 0.238289 GACGGGTACTTGTCGTCGAA 59.762 55.0 0.00 0.0 42.60 3.71 R
2524 2648 0.174162 GCATTGGGAAGATGCACACC 59.826 55.0 4.35 0.0 46.96 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.892934 TGAATTTGCAAAGGTACAAGAGGT 59.107 37.500 18.19 0.00 0.00 3.85
96 97 4.280929 AGTCTTTGGGGTTTTGCAATCTAC 59.719 41.667 0.00 0.00 0.00 2.59
102 103 6.865834 TGGGGTTTTGCAATCTACATTTAT 57.134 33.333 0.00 0.00 0.00 1.40
158 160 3.861886 GCAAACCCTGAACAACATCATGG 60.862 47.826 0.00 0.00 39.98 3.66
160 162 0.452987 CCCTGAACAACATCATGGCG 59.547 55.000 0.00 0.00 30.03 5.69
161 163 0.452987 CCTGAACAACATCATGGCGG 59.547 55.000 0.00 0.00 0.00 6.13
172 174 0.959867 TCATGGCGGGTTGTGTGATG 60.960 55.000 0.00 0.00 0.00 3.07
193 195 5.723492 TGCTTCACAACATAATCATCGAG 57.277 39.130 0.00 0.00 0.00 4.04
276 279 2.660572 AGAGACTCTGACCGCATACAT 58.339 47.619 3.56 0.00 0.00 2.29
324 328 2.100584 TGAAGATGCAAACACCCACAAC 59.899 45.455 0.00 0.00 0.00 3.32
341 345 2.290577 ACAACCAGCTTCAGAAGGATCC 60.291 50.000 12.30 2.48 0.00 3.36
343 347 0.179062 CCAGCTTCAGAAGGATCCCG 60.179 60.000 8.55 0.00 0.00 5.14
357 361 0.327924 ATCCCGTTGAGCACCATTGA 59.672 50.000 0.00 0.00 0.00 2.57
367 372 2.754552 GAGCACCATTGACAAAGGCATA 59.245 45.455 9.36 0.00 0.00 3.14
368 373 3.368248 AGCACCATTGACAAAGGCATAT 58.632 40.909 9.36 0.00 0.00 1.78
380 385 4.225717 ACAAAGGCATATCCAAAGGCATTT 59.774 37.500 0.00 0.00 40.37 2.32
381 386 5.187687 CAAAGGCATATCCAAAGGCATTTT 58.812 37.500 0.00 0.00 38.06 1.82
450 456 6.612247 AATTCGTGTGTGAACAGTTCATTA 57.388 33.333 19.04 8.93 42.47 1.90
599 609 8.128582 TGTGAGTATGTGTCAAATTCAGAAAAC 58.871 33.333 0.00 0.00 0.00 2.43
600 610 7.591426 GTGAGTATGTGTCAAATTCAGAAAACC 59.409 37.037 0.00 0.00 0.00 3.27
601 611 7.284261 TGAGTATGTGTCAAATTCAGAAAACCA 59.716 33.333 0.00 0.00 0.00 3.67
602 612 8.181904 AGTATGTGTCAAATTCAGAAAACCAT 57.818 30.769 0.00 0.00 0.00 3.55
640 651 2.380081 CGTTATGCGGGACCTGTTC 58.620 57.895 1.33 0.00 36.85 3.18
643 654 2.862674 TTATGCGGGACCTGTTCGGC 62.863 60.000 1.33 1.43 35.61 5.54
667 678 3.283684 CCGTGTGAGCCGGCAAAA 61.284 61.111 31.54 10.86 38.85 2.44
668 679 2.051345 CGTGTGAGCCGGCAAAAC 60.051 61.111 31.54 22.88 0.00 2.43
669 680 2.051345 GTGTGAGCCGGCAAAACG 60.051 61.111 31.54 0.00 0.00 3.60
670 681 3.959975 TGTGAGCCGGCAAAACGC 61.960 61.111 31.54 21.83 41.28 4.84
673 684 4.322385 GAGCCGGCAAAACGCGTT 62.322 61.111 31.54 20.79 43.84 4.84
674 685 3.817274 GAGCCGGCAAAACGCGTTT 62.817 57.895 30.36 30.36 43.84 3.60
675 686 2.957489 GCCGGCAAAACGCGTTTT 60.957 55.556 36.93 36.93 43.84 2.43
676 687 1.657794 GCCGGCAAAACGCGTTTTA 60.658 52.632 40.02 0.00 43.84 1.52
677 688 1.868217 GCCGGCAAAACGCGTTTTAC 61.868 55.000 40.02 35.16 43.84 2.01
678 689 1.590004 CCGGCAAAACGCGTTTTACG 61.590 55.000 38.48 38.48 45.88 3.18
692 703 5.197254 CGTTTTACGCGAACTTTAAACAC 57.803 39.130 15.93 7.15 33.65 3.32
693 704 4.144448 CGTTTTACGCGAACTTTAAACACG 60.144 41.667 15.93 14.17 33.65 4.49
694 705 2.558594 TACGCGAACTTTAAACACGC 57.441 45.000 15.93 14.63 44.64 5.34
696 707 3.713968 GCGAACTTTAAACACGCGA 57.286 47.368 15.93 0.00 39.90 5.87
697 708 2.221799 GCGAACTTTAAACACGCGAT 57.778 45.000 15.93 0.00 39.90 4.58
698 709 3.357770 GCGAACTTTAAACACGCGATA 57.642 42.857 15.93 0.00 39.90 2.92
699 710 3.724277 GCGAACTTTAAACACGCGATAA 58.276 40.909 15.93 3.62 39.90 1.75
700 711 4.143116 GCGAACTTTAAACACGCGATAAA 58.857 39.130 15.93 11.47 39.90 1.40
701 712 4.256766 GCGAACTTTAAACACGCGATAAAG 59.743 41.667 15.93 21.25 40.67 1.85
702 713 4.779523 CGAACTTTAAACACGCGATAAAGG 59.220 41.667 25.85 13.48 39.70 3.11
703 714 5.613142 CGAACTTTAAACACGCGATAAAGGT 60.613 40.000 25.85 23.26 38.81 3.50
704 715 5.025986 ACTTTAAACACGCGATAAAGGTG 57.974 39.130 25.85 13.44 39.70 4.00
705 716 4.512571 ACTTTAAACACGCGATAAAGGTGT 59.487 37.500 25.85 13.94 46.11 4.16
707 718 0.515564 AACACGCGATAAAGGTGTGC 59.484 50.000 15.93 0.00 46.89 4.57
708 719 0.320421 ACACGCGATAAAGGTGTGCT 60.320 50.000 15.93 0.00 46.89 4.40
709 720 1.067425 ACACGCGATAAAGGTGTGCTA 60.067 47.619 15.93 0.00 46.89 3.49
710 721 1.588404 CACGCGATAAAGGTGTGCTAG 59.412 52.381 15.93 0.00 38.83 3.42
711 722 1.475280 ACGCGATAAAGGTGTGCTAGA 59.525 47.619 15.93 0.00 0.00 2.43
712 723 2.120232 CGCGATAAAGGTGTGCTAGAG 58.880 52.381 0.00 0.00 0.00 2.43
713 724 2.223502 CGCGATAAAGGTGTGCTAGAGA 60.224 50.000 0.00 0.00 0.00 3.10
714 725 3.551046 CGCGATAAAGGTGTGCTAGAGAT 60.551 47.826 0.00 0.00 0.00 2.75
715 726 3.738282 GCGATAAAGGTGTGCTAGAGATG 59.262 47.826 0.00 0.00 0.00 2.90
716 727 3.738282 CGATAAAGGTGTGCTAGAGATGC 59.262 47.826 0.00 0.00 0.00 3.91
717 728 4.500545 CGATAAAGGTGTGCTAGAGATGCT 60.501 45.833 0.00 0.00 0.00 3.79
718 729 2.687700 AAGGTGTGCTAGAGATGCTG 57.312 50.000 0.00 0.00 0.00 4.41
719 730 1.566211 AGGTGTGCTAGAGATGCTGT 58.434 50.000 0.00 0.00 0.00 4.40
720 731 2.739943 AGGTGTGCTAGAGATGCTGTA 58.260 47.619 0.00 0.00 0.00 2.74
721 732 3.099905 AGGTGTGCTAGAGATGCTGTAA 58.900 45.455 0.00 0.00 0.00 2.41
722 733 3.131933 AGGTGTGCTAGAGATGCTGTAAG 59.868 47.826 0.00 0.00 0.00 2.34
723 734 3.118956 GGTGTGCTAGAGATGCTGTAAGT 60.119 47.826 0.00 0.00 35.30 2.24
724 735 4.098044 GGTGTGCTAGAGATGCTGTAAGTA 59.902 45.833 0.00 0.00 35.30 2.24
725 736 5.038033 GTGTGCTAGAGATGCTGTAAGTAC 58.962 45.833 0.00 0.00 35.30 2.73
726 737 4.950475 TGTGCTAGAGATGCTGTAAGTACT 59.050 41.667 0.00 0.00 35.30 2.73
727 738 5.163612 TGTGCTAGAGATGCTGTAAGTACTG 60.164 44.000 0.00 0.00 35.30 2.74
728 739 4.202060 TGCTAGAGATGCTGTAAGTACTGC 60.202 45.833 12.03 12.03 46.99 4.40
732 743 2.695646 GCTGTAAGTACTGCGCGC 59.304 61.111 27.26 27.26 40.42 6.86
733 744 2.987593 CTGTAAGTACTGCGCGCG 59.012 61.111 28.44 28.44 0.00 6.86
734 745 3.126722 CTGTAAGTACTGCGCGCGC 62.127 63.158 45.02 45.02 42.35 6.86
759 770 1.331399 GGGAGAGGCAGTGGTAGTCC 61.331 65.000 0.00 0.00 0.00 3.85
775 786 1.812571 AGTCCCACGTGAAAATGATGC 59.187 47.619 19.30 0.00 0.00 3.91
776 787 1.135402 GTCCCACGTGAAAATGATGCC 60.135 52.381 19.30 0.00 0.00 4.40
777 788 1.176527 CCCACGTGAAAATGATGCCT 58.823 50.000 19.30 0.00 0.00 4.75
784 798 4.745125 ACGTGAAAATGATGCCTATACTCG 59.255 41.667 0.00 0.00 0.00 4.18
791 805 5.801531 ATGATGCCTATACTCGGTTGTTA 57.198 39.130 0.00 0.00 0.00 2.41
792 806 5.801531 TGATGCCTATACTCGGTTGTTAT 57.198 39.130 0.00 0.00 0.00 1.89
793 807 5.779922 TGATGCCTATACTCGGTTGTTATC 58.220 41.667 0.00 0.00 0.00 1.75
794 808 5.303333 TGATGCCTATACTCGGTTGTTATCA 59.697 40.000 0.00 0.00 0.00 2.15
797 811 6.220930 TGCCTATACTCGGTTGTTATCATTC 58.779 40.000 0.00 0.00 0.00 2.67
839 857 0.861837 CACTGAAGCACGAGTTGGTC 59.138 55.000 0.00 0.00 33.68 4.02
840 858 0.249911 ACTGAAGCACGAGTTGGTCC 60.250 55.000 0.00 0.00 33.68 4.46
847 865 4.675029 CGAGTTGGTCCGGGCGTT 62.675 66.667 0.00 0.00 0.00 4.84
890 908 3.582647 TGTCCCTGTTGCTTATCTCTTCA 59.417 43.478 0.00 0.00 0.00 3.02
898 916 5.750547 TGTTGCTTATCTCTTCAGCTTATCG 59.249 40.000 0.00 0.00 34.42 2.92
899 917 5.774498 TGCTTATCTCTTCAGCTTATCGA 57.226 39.130 0.00 0.00 34.42 3.59
900 918 5.767269 TGCTTATCTCTTCAGCTTATCGAG 58.233 41.667 0.00 0.00 34.42 4.04
901 919 5.300539 TGCTTATCTCTTCAGCTTATCGAGT 59.699 40.000 0.00 0.00 34.42 4.18
902 920 5.629020 GCTTATCTCTTCAGCTTATCGAGTG 59.371 44.000 0.00 0.00 0.00 3.51
903 921 4.582701 ATCTCTTCAGCTTATCGAGTGG 57.417 45.455 0.00 0.00 0.00 4.00
904 922 2.690497 TCTCTTCAGCTTATCGAGTGGG 59.310 50.000 0.00 0.00 0.00 4.61
905 923 2.690497 CTCTTCAGCTTATCGAGTGGGA 59.310 50.000 0.00 0.00 0.00 4.37
906 924 2.427453 TCTTCAGCTTATCGAGTGGGAC 59.573 50.000 0.00 0.00 0.00 4.46
907 925 2.145397 TCAGCTTATCGAGTGGGACT 57.855 50.000 0.00 0.00 0.00 3.85
908 926 3.292492 TCAGCTTATCGAGTGGGACTA 57.708 47.619 0.00 0.00 0.00 2.59
909 927 3.833732 TCAGCTTATCGAGTGGGACTAT 58.166 45.455 0.00 0.00 0.00 2.12
910 928 3.821600 TCAGCTTATCGAGTGGGACTATC 59.178 47.826 0.00 0.00 0.00 2.08
915 933 2.526888 TCGAGTGGGACTATCCAGTT 57.473 50.000 0.00 0.00 40.33 3.16
916 934 2.100197 TCGAGTGGGACTATCCAGTTG 58.900 52.381 0.00 0.00 40.33 3.16
934 952 5.820423 CCAGTTGGATATAAATTCCGACACA 59.180 40.000 12.04 0.00 46.25 3.72
939 957 6.411376 TGGATATAAATTCCGACACAACACT 58.589 36.000 0.00 0.00 35.94 3.55
941 959 6.018180 GGATATAAATTCCGACACAACACTCC 60.018 42.308 0.00 0.00 0.00 3.85
945 963 0.387929 TCCGACACAACACTCCTCAC 59.612 55.000 0.00 0.00 0.00 3.51
946 964 0.389391 CCGACACAACACTCCTCACT 59.611 55.000 0.00 0.00 0.00 3.41
947 965 1.603172 CCGACACAACACTCCTCACTC 60.603 57.143 0.00 0.00 0.00 3.51
948 966 1.603172 CGACACAACACTCCTCACTCC 60.603 57.143 0.00 0.00 0.00 3.85
949 967 1.689273 GACACAACACTCCTCACTCCT 59.311 52.381 0.00 0.00 0.00 3.69
950 968 1.689273 ACACAACACTCCTCACTCCTC 59.311 52.381 0.00 0.00 0.00 3.71
951 969 1.688735 CACAACACTCCTCACTCCTCA 59.311 52.381 0.00 0.00 0.00 3.86
952 970 1.967066 ACAACACTCCTCACTCCTCAG 59.033 52.381 0.00 0.00 0.00 3.35
1859 1890 9.727627 AAGAAATAAATCTGAGAATTGCGATTC 57.272 29.630 17.64 17.64 41.63 2.52
1924 1956 8.181904 ACAATAATAAATTGGGGCTGTCTATG 57.818 34.615 3.07 0.00 33.56 2.23
1926 1958 8.517878 CAATAATAAATTGGGGCTGTCTATGAG 58.482 37.037 0.00 0.00 0.00 2.90
1953 1986 2.164219 ACTTGCGTGAAATATTGCAGGG 59.836 45.455 16.15 4.50 38.57 4.45
1960 1993 5.510671 CGTGAAATATTGCAGGGTATGTTC 58.489 41.667 8.08 0.00 0.00 3.18
1962 1995 6.511767 CGTGAAATATTGCAGGGTATGTTCTC 60.512 42.308 8.08 0.00 0.00 2.87
1993 2026 9.628500 AACAATATTCCTAAATCTCAGTAACCC 57.372 33.333 0.00 0.00 0.00 4.11
2000 2033 6.731919 TCCTAAATCTCAGTAACCCCTACAAA 59.268 38.462 0.00 0.00 32.37 2.83
2004 2037 7.989947 AATCTCAGTAACCCCTACAAAGATA 57.010 36.000 0.00 0.00 35.00 1.98
2009 2042 9.584008 CTCAGTAACCCCTACAAAGATATACTA 57.416 37.037 0.00 0.00 32.37 1.82
2010 2043 9.940974 TCAGTAACCCCTACAAAGATATACTAA 57.059 33.333 0.00 0.00 32.37 2.24
2065 2105 7.676393 AGAATTTAGATCAACATCGTCGTTTC 58.324 34.615 0.00 0.00 33.75 2.78
2066 2106 7.545965 AGAATTTAGATCAACATCGTCGTTTCT 59.454 33.333 0.00 0.00 33.75 2.52
2067 2107 7.596749 ATTTAGATCAACATCGTCGTTTCTT 57.403 32.000 0.00 0.00 33.75 2.52
2068 2108 7.416154 TTTAGATCAACATCGTCGTTTCTTT 57.584 32.000 0.00 0.00 33.75 2.52
2069 2109 5.269459 AGATCAACATCGTCGTTTCTTTG 57.731 39.130 0.00 0.00 33.75 2.77
2076 2116 7.374754 TCAACATCGTCGTTTCTTTGTTTTATG 59.625 33.333 0.00 0.00 0.00 1.90
2109 2149 7.125659 TCCATATTTCCATCTCAGCCGATATAA 59.874 37.037 0.00 0.00 0.00 0.98
2113 2153 5.808366 TCCATCTCAGCCGATATAAAACT 57.192 39.130 0.00 0.00 0.00 2.66
2125 2165 6.071278 GCCGATATAAAACTCCTCTATGACCT 60.071 42.308 0.00 0.00 0.00 3.85
2149 2189 3.435327 TGGACACATGTACGCAGAATTTC 59.565 43.478 0.00 0.00 0.00 2.17
2254 2378 9.733556 TTATTTCATAGTCACATGGTTACAGTT 57.266 29.630 0.00 0.00 0.00 3.16
2256 2380 8.771920 TTTCATAGTCACATGGTTACAGTTAG 57.228 34.615 0.00 0.00 0.00 2.34
2259 2383 8.251026 TCATAGTCACATGGTTACAGTTAGAAG 58.749 37.037 0.00 0.00 0.00 2.85
2261 2385 4.091509 GTCACATGGTTACAGTTAGAAGCG 59.908 45.833 0.00 0.00 0.00 4.68
2270 2394 7.034397 GGTTACAGTTAGAAGCGATAAGTTCT 58.966 38.462 0.00 0.00 36.90 3.01
2284 2408 0.320771 AGTTCTGCAGCAACGGTAGG 60.321 55.000 9.47 0.00 0.00 3.18
2285 2409 0.320421 GTTCTGCAGCAACGGTAGGA 60.320 55.000 9.47 0.00 0.00 2.94
2319 2443 4.699192 ACGCAGTGCTATCCCCTA 57.301 55.556 14.33 0.00 42.51 3.53
2320 2444 3.149436 ACGCAGTGCTATCCCCTAT 57.851 52.632 14.33 0.00 42.51 2.57
2321 2445 1.424638 ACGCAGTGCTATCCCCTATT 58.575 50.000 14.33 0.00 42.51 1.73
2322 2446 1.344763 ACGCAGTGCTATCCCCTATTC 59.655 52.381 14.33 0.00 42.51 1.75
2323 2447 1.338200 CGCAGTGCTATCCCCTATTCC 60.338 57.143 14.33 0.00 0.00 3.01
2324 2448 1.003696 GCAGTGCTATCCCCTATTCCC 59.996 57.143 8.18 0.00 0.00 3.97
2325 2449 2.625639 CAGTGCTATCCCCTATTCCCT 58.374 52.381 0.00 0.00 0.00 4.20
2326 2450 2.569404 CAGTGCTATCCCCTATTCCCTC 59.431 54.545 0.00 0.00 0.00 4.30
2327 2451 1.909986 GTGCTATCCCCTATTCCCTCC 59.090 57.143 0.00 0.00 0.00 4.30
2328 2452 1.196012 GCTATCCCCTATTCCCTCCG 58.804 60.000 0.00 0.00 0.00 4.63
2329 2453 1.552719 GCTATCCCCTATTCCCTCCGT 60.553 57.143 0.00 0.00 0.00 4.69
2330 2454 2.903926 CTATCCCCTATTCCCTCCGTT 58.096 52.381 0.00 0.00 0.00 4.44
2331 2455 1.730851 ATCCCCTATTCCCTCCGTTC 58.269 55.000 0.00 0.00 0.00 3.95
2332 2456 0.757935 TCCCCTATTCCCTCCGTTCG 60.758 60.000 0.00 0.00 0.00 3.95
2333 2457 1.746517 CCCTATTCCCTCCGTTCGG 59.253 63.158 4.74 4.74 0.00 4.30
2334 2458 1.047034 CCCTATTCCCTCCGTTCGGT 61.047 60.000 11.04 0.00 0.00 4.69
2335 2459 0.104304 CCTATTCCCTCCGTTCGGTG 59.896 60.000 11.04 8.58 0.00 4.94
2336 2460 1.108776 CTATTCCCTCCGTTCGGTGA 58.891 55.000 13.68 5.99 0.00 4.02
2337 2461 1.479323 CTATTCCCTCCGTTCGGTGAA 59.521 52.381 13.68 13.06 0.00 3.18
2338 2462 0.249398 ATTCCCTCCGTTCGGTGAAG 59.751 55.000 13.68 3.63 0.00 3.02
2339 2463 0.828762 TTCCCTCCGTTCGGTGAAGA 60.829 55.000 13.68 7.98 0.00 2.87
2340 2464 1.215647 CCCTCCGTTCGGTGAAGAG 59.784 63.158 13.68 2.97 0.00 2.85
2341 2465 1.533469 CCCTCCGTTCGGTGAAGAGT 61.533 60.000 13.68 0.00 0.00 3.24
2342 2466 0.388649 CCTCCGTTCGGTGAAGAGTG 60.389 60.000 13.68 0.00 0.00 3.51
2343 2467 0.314302 CTCCGTTCGGTGAAGAGTGT 59.686 55.000 11.04 0.00 0.00 3.55
2344 2468 1.538512 CTCCGTTCGGTGAAGAGTGTA 59.461 52.381 11.04 0.00 0.00 2.90
2345 2469 1.267806 TCCGTTCGGTGAAGAGTGTAC 59.732 52.381 11.04 0.00 0.00 2.90
2346 2470 1.324718 CGTTCGGTGAAGAGTGTACG 58.675 55.000 0.00 0.00 0.00 3.67
2347 2471 1.334419 CGTTCGGTGAAGAGTGTACGT 60.334 52.381 0.00 0.00 0.00 3.57
2348 2472 2.735823 GTTCGGTGAAGAGTGTACGTT 58.264 47.619 0.00 0.00 0.00 3.99
2349 2473 3.118542 GTTCGGTGAAGAGTGTACGTTT 58.881 45.455 0.00 0.00 0.00 3.60
2350 2474 2.734670 TCGGTGAAGAGTGTACGTTTG 58.265 47.619 0.00 0.00 0.00 2.93
2351 2475 1.790623 CGGTGAAGAGTGTACGTTTGG 59.209 52.381 0.00 0.00 0.00 3.28
2352 2476 2.140717 GGTGAAGAGTGTACGTTTGGG 58.859 52.381 0.00 0.00 0.00 4.12
2353 2477 2.484241 GGTGAAGAGTGTACGTTTGGGT 60.484 50.000 0.00 0.00 0.00 4.51
2354 2478 3.200483 GTGAAGAGTGTACGTTTGGGTT 58.800 45.455 0.00 0.00 0.00 4.11
2355 2479 3.624410 GTGAAGAGTGTACGTTTGGGTTT 59.376 43.478 0.00 0.00 0.00 3.27
2356 2480 4.810491 GTGAAGAGTGTACGTTTGGGTTTA 59.190 41.667 0.00 0.00 0.00 2.01
2357 2481 5.294060 GTGAAGAGTGTACGTTTGGGTTTAA 59.706 40.000 0.00 0.00 0.00 1.52
2358 2482 5.879223 TGAAGAGTGTACGTTTGGGTTTAAA 59.121 36.000 0.00 0.00 0.00 1.52
2359 2483 6.373774 TGAAGAGTGTACGTTTGGGTTTAAAA 59.626 34.615 0.00 0.00 0.00 1.52
2360 2484 6.947644 AGAGTGTACGTTTGGGTTTAAAAT 57.052 33.333 0.00 0.00 0.00 1.82
2361 2485 7.337480 AGAGTGTACGTTTGGGTTTAAAATT 57.663 32.000 0.00 0.00 0.00 1.82
2362 2486 7.774134 AGAGTGTACGTTTGGGTTTAAAATTT 58.226 30.769 0.00 0.00 0.00 1.82
2363 2487 7.703197 AGAGTGTACGTTTGGGTTTAAAATTTG 59.297 33.333 0.00 0.00 0.00 2.32
2364 2488 7.321908 AGTGTACGTTTGGGTTTAAAATTTGT 58.678 30.769 0.00 0.00 0.00 2.83
2365 2489 7.488792 AGTGTACGTTTGGGTTTAAAATTTGTC 59.511 33.333 0.00 0.00 0.00 3.18
2366 2490 6.755607 TGTACGTTTGGGTTTAAAATTTGTCC 59.244 34.615 0.00 0.00 0.00 4.02
2367 2491 5.731591 ACGTTTGGGTTTAAAATTTGTCCA 58.268 33.333 0.00 0.00 0.00 4.02
2368 2492 6.350103 ACGTTTGGGTTTAAAATTTGTCCAT 58.650 32.000 0.00 0.00 0.00 3.41
2369 2493 7.498443 ACGTTTGGGTTTAAAATTTGTCCATA 58.502 30.769 0.00 0.00 0.00 2.74
2370 2494 7.985752 ACGTTTGGGTTTAAAATTTGTCCATAA 59.014 29.630 0.00 0.00 0.00 1.90
2371 2495 8.827677 CGTTTGGGTTTAAAATTTGTCCATAAA 58.172 29.630 0.00 0.00 0.00 1.40
2397 2521 9.860898 AAAAGTGTATTTCTATCTTTCCAATGC 57.139 29.630 0.00 0.00 0.00 3.56
2398 2522 8.579850 AAGTGTATTTCTATCTTTCCAATGCA 57.420 30.769 0.00 0.00 0.00 3.96
2399 2523 8.757982 AGTGTATTTCTATCTTTCCAATGCAT 57.242 30.769 0.00 0.00 0.00 3.96
2400 2524 9.193806 AGTGTATTTCTATCTTTCCAATGCATT 57.806 29.630 5.99 5.99 0.00 3.56
2401 2525 9.807649 GTGTATTTCTATCTTTCCAATGCATTT 57.192 29.630 9.83 0.00 0.00 2.32
2412 2536 9.612066 TCTTTCCAATGCATTTTAAAGTTTTCT 57.388 25.926 26.96 0.00 0.00 2.52
2413 2537 9.868389 CTTTCCAATGCATTTTAAAGTTTTCTC 57.132 29.630 23.33 0.00 0.00 2.87
2414 2538 9.612066 TTTCCAATGCATTTTAAAGTTTTCTCT 57.388 25.926 9.83 0.00 0.00 3.10
2415 2539 8.816640 TCCAATGCATTTTAAAGTTTTCTCTC 57.183 30.769 9.83 0.00 0.00 3.20
2416 2540 8.420222 TCCAATGCATTTTAAAGTTTTCTCTCA 58.580 29.630 9.83 0.00 0.00 3.27
2417 2541 9.211485 CCAATGCATTTTAAAGTTTTCTCTCAT 57.789 29.630 9.83 0.00 0.00 2.90
2419 2543 9.985730 AATGCATTTTAAAGTTTTCTCTCATCA 57.014 25.926 5.99 0.00 0.00 3.07
2420 2544 8.801715 TGCATTTTAAAGTTTTCTCTCATCAC 57.198 30.769 0.00 0.00 0.00 3.06
2421 2545 8.412456 TGCATTTTAAAGTTTTCTCTCATCACA 58.588 29.630 0.00 0.00 0.00 3.58
2422 2546 8.694394 GCATTTTAAAGTTTTCTCTCATCACAC 58.306 33.333 0.00 0.00 0.00 3.82
2423 2547 8.895845 CATTTTAAAGTTTTCTCTCATCACACG 58.104 33.333 0.00 0.00 0.00 4.49
2424 2548 6.539649 TTAAAGTTTTCTCTCATCACACGG 57.460 37.500 0.00 0.00 0.00 4.94
2425 2549 3.753294 AGTTTTCTCTCATCACACGGT 57.247 42.857 0.00 0.00 0.00 4.83
2426 2550 4.866508 AGTTTTCTCTCATCACACGGTA 57.133 40.909 0.00 0.00 0.00 4.02
2427 2551 5.209818 AGTTTTCTCTCATCACACGGTAA 57.790 39.130 0.00 0.00 0.00 2.85
2428 2552 5.794894 AGTTTTCTCTCATCACACGGTAAT 58.205 37.500 0.00 0.00 0.00 1.89
2429 2553 5.869888 AGTTTTCTCTCATCACACGGTAATC 59.130 40.000 0.00 0.00 0.00 1.75
2430 2554 5.400066 TTTCTCTCATCACACGGTAATCA 57.600 39.130 0.00 0.00 0.00 2.57
2431 2555 5.400066 TTCTCTCATCACACGGTAATCAA 57.600 39.130 0.00 0.00 0.00 2.57
2432 2556 4.998788 TCTCTCATCACACGGTAATCAAG 58.001 43.478 0.00 0.00 0.00 3.02
2433 2557 4.705023 TCTCTCATCACACGGTAATCAAGA 59.295 41.667 0.00 0.00 0.00 3.02
2434 2558 4.744570 TCTCATCACACGGTAATCAAGAC 58.255 43.478 0.00 0.00 0.00 3.01
2435 2559 3.857052 TCATCACACGGTAATCAAGACC 58.143 45.455 0.00 0.00 0.00 3.85
2436 2560 3.259625 TCATCACACGGTAATCAAGACCA 59.740 43.478 0.00 0.00 36.72 4.02
2437 2561 3.755112 TCACACGGTAATCAAGACCAA 57.245 42.857 0.00 0.00 36.72 3.67
2438 2562 4.280436 TCACACGGTAATCAAGACCAAT 57.720 40.909 0.00 0.00 36.72 3.16
2439 2563 5.408880 TCACACGGTAATCAAGACCAATA 57.591 39.130 0.00 0.00 36.72 1.90
2440 2564 5.795972 TCACACGGTAATCAAGACCAATAA 58.204 37.500 0.00 0.00 36.72 1.40
2441 2565 6.411376 TCACACGGTAATCAAGACCAATAAT 58.589 36.000 0.00 0.00 36.72 1.28
2442 2566 7.557724 TCACACGGTAATCAAGACCAATAATA 58.442 34.615 0.00 0.00 36.72 0.98
2443 2567 8.208224 TCACACGGTAATCAAGACCAATAATAT 58.792 33.333 0.00 0.00 36.72 1.28
2444 2568 8.836413 CACACGGTAATCAAGACCAATAATATT 58.164 33.333 0.00 0.00 36.72 1.28
2445 2569 9.403583 ACACGGTAATCAAGACCAATAATATTT 57.596 29.630 0.00 0.00 36.72 1.40
2492 2616 8.668510 ATTTCTACATGTACTTAGCTCATTGG 57.331 34.615 0.08 0.00 0.00 3.16
2493 2617 7.418337 TTCTACATGTACTTAGCTCATTGGA 57.582 36.000 0.08 0.00 0.00 3.53
2494 2618 7.043961 TCTACATGTACTTAGCTCATTGGAG 57.956 40.000 0.08 0.00 44.33 3.86
2495 2619 5.028549 ACATGTACTTAGCTCATTGGAGG 57.971 43.478 0.00 0.00 41.67 4.30
2528 2652 8.706322 ATTAAAAAGGACAAAGATAGTGGTGT 57.294 30.769 0.00 0.00 0.00 4.16
2529 2653 6.391227 AAAAAGGACAAAGATAGTGGTGTG 57.609 37.500 0.00 0.00 0.00 3.82
2530 2654 3.059352 AGGACAAAGATAGTGGTGTGC 57.941 47.619 0.00 0.00 33.01 4.57
2531 2655 2.371841 AGGACAAAGATAGTGGTGTGCA 59.628 45.455 0.00 0.00 35.05 4.57
2532 2656 3.009473 AGGACAAAGATAGTGGTGTGCAT 59.991 43.478 0.00 0.00 35.05 3.96
2533 2657 3.375299 GGACAAAGATAGTGGTGTGCATC 59.625 47.826 0.00 0.00 33.08 3.91
2534 2658 4.256920 GACAAAGATAGTGGTGTGCATCT 58.743 43.478 0.00 0.00 0.00 2.90
2535 2659 4.655963 ACAAAGATAGTGGTGTGCATCTT 58.344 39.130 0.00 0.00 38.95 2.40
2536 2660 4.697352 ACAAAGATAGTGGTGTGCATCTTC 59.303 41.667 0.00 0.00 36.87 2.87
2537 2661 3.550437 AGATAGTGGTGTGCATCTTCC 57.450 47.619 0.00 0.00 0.00 3.46
2538 2662 2.171448 AGATAGTGGTGTGCATCTTCCC 59.829 50.000 0.00 0.00 0.00 3.97
2539 2663 1.357137 TAGTGGTGTGCATCTTCCCA 58.643 50.000 0.00 0.00 0.00 4.37
2540 2664 0.478072 AGTGGTGTGCATCTTCCCAA 59.522 50.000 0.00 0.00 0.00 4.12
2541 2665 1.076024 AGTGGTGTGCATCTTCCCAAT 59.924 47.619 0.00 0.00 0.00 3.16
2542 2666 1.203052 GTGGTGTGCATCTTCCCAATG 59.797 52.381 0.00 0.00 0.00 2.82
2550 2674 4.133013 GCATCTTCCCAATGCATTTTCT 57.867 40.909 9.83 0.00 46.93 2.52
2551 2675 5.266733 GCATCTTCCCAATGCATTTTCTA 57.733 39.130 9.83 0.00 46.93 2.10
2552 2676 5.045872 GCATCTTCCCAATGCATTTTCTAC 58.954 41.667 9.83 0.00 46.93 2.59
2553 2677 5.394443 GCATCTTCCCAATGCATTTTCTACA 60.394 40.000 9.83 0.00 46.93 2.74
2554 2678 5.643379 TCTTCCCAATGCATTTTCTACAC 57.357 39.130 9.83 0.00 0.00 2.90
2555 2679 5.324409 TCTTCCCAATGCATTTTCTACACT 58.676 37.500 9.83 0.00 0.00 3.55
2556 2680 5.415701 TCTTCCCAATGCATTTTCTACACTC 59.584 40.000 9.83 0.00 0.00 3.51
2557 2681 4.016444 TCCCAATGCATTTTCTACACTCC 58.984 43.478 9.83 0.00 0.00 3.85
2558 2682 3.763360 CCCAATGCATTTTCTACACTCCA 59.237 43.478 9.83 0.00 0.00 3.86
2559 2683 4.403432 CCCAATGCATTTTCTACACTCCAT 59.597 41.667 9.83 0.00 0.00 3.41
2560 2684 5.593909 CCCAATGCATTTTCTACACTCCATA 59.406 40.000 9.83 0.00 0.00 2.74
2561 2685 6.096705 CCCAATGCATTTTCTACACTCCATAA 59.903 38.462 9.83 0.00 0.00 1.90
2562 2686 7.201938 CCCAATGCATTTTCTACACTCCATAAT 60.202 37.037 9.83 0.00 0.00 1.28
2563 2687 8.199449 CCAATGCATTTTCTACACTCCATAATT 58.801 33.333 9.83 0.00 0.00 1.40
2564 2688 9.590451 CAATGCATTTTCTACACTCCATAATTT 57.410 29.630 9.83 0.00 0.00 1.82
2565 2689 9.590451 AATGCATTTTCTACACTCCATAATTTG 57.410 29.630 5.99 0.00 0.00 2.32
2566 2690 8.121305 TGCATTTTCTACACTCCATAATTTGT 57.879 30.769 0.00 0.00 0.00 2.83
2567 2691 9.237187 TGCATTTTCTACACTCCATAATTTGTA 57.763 29.630 0.00 0.00 0.00 2.41
2568 2692 9.503427 GCATTTTCTACACTCCATAATTTGTAC 57.497 33.333 0.00 0.00 0.00 2.90
2597 2721 7.596749 ATTCTTAGATGTACACTTTTCACCG 57.403 36.000 0.00 0.00 0.00 4.94
2598 2722 5.475719 TCTTAGATGTACACTTTTCACCGG 58.524 41.667 0.00 0.00 0.00 5.28
2599 2723 5.244402 TCTTAGATGTACACTTTTCACCGGA 59.756 40.000 9.46 0.00 0.00 5.14
2600 2724 3.926616 AGATGTACACTTTTCACCGGAG 58.073 45.455 9.46 0.00 0.00 4.63
2632 2756 5.151389 CCCAAAGTTCGCTAAACAATACAC 58.849 41.667 2.25 0.00 40.56 2.90
2637 2761 4.817464 AGTTCGCTAAACAATACACAACCA 59.183 37.500 2.25 0.00 40.56 3.67
2641 2765 7.241663 TCGCTAAACAATACACAACCATATC 57.758 36.000 0.00 0.00 0.00 1.63
2657 2781 8.429641 ACAACCATATCCTATTCACGAGTAATT 58.570 33.333 0.00 0.00 0.00 1.40
2734 2858 2.485479 GGCCATACGATGACTTGTCCAT 60.485 50.000 0.00 0.00 0.00 3.41
2742 2866 1.933021 TGACTTGTCCATAGACCCGT 58.067 50.000 0.00 0.00 42.81 5.28
2796 2920 7.283354 AGTTAGACTAGATTAAAATTGGCAGGC 59.717 37.037 0.00 0.00 0.00 4.85
2797 2921 4.576463 AGACTAGATTAAAATTGGCAGGCG 59.424 41.667 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.643693 CAAATTCAATATGCTTTCTAGTTTGGT 57.356 29.630 0.00 0.00 0.00 3.67
51 52 5.710099 ACTCTTTCAATATCTTTTCGGGCAA 59.290 36.000 0.00 0.00 0.00 4.52
96 97 7.605449 AGAAGGACCACAAACAATGATAAATG 58.395 34.615 0.00 0.00 0.00 2.32
102 103 3.138304 CGAGAAGGACCACAAACAATGA 58.862 45.455 0.00 0.00 0.00 2.57
110 111 2.294074 CCAAAAACGAGAAGGACCACA 58.706 47.619 0.00 0.00 0.00 4.17
158 160 1.210155 GAAGCATCACACAACCCGC 59.790 57.895 0.00 0.00 0.00 6.13
172 174 4.811024 TCCTCGATGATTATGTTGTGAAGC 59.189 41.667 0.00 0.00 0.00 3.86
184 186 4.483950 TGTCCCTCTTATCCTCGATGATT 58.516 43.478 8.55 0.00 0.00 2.57
193 195 4.164221 TCCAAGTTCATGTCCCTCTTATCC 59.836 45.833 0.00 0.00 0.00 2.59
276 279 2.419990 CCGGTATGTCTGAAGGAATGCA 60.420 50.000 0.00 0.00 0.00 3.96
324 328 0.179062 CGGGATCCTTCTGAAGCTGG 60.179 60.000 12.58 0.00 0.00 4.85
341 345 0.950836 TTGTCAATGGTGCTCAACGG 59.049 50.000 0.00 0.00 0.00 4.44
343 347 2.863704 GCCTTTGTCAATGGTGCTCAAC 60.864 50.000 16.59 0.00 0.00 3.18
357 361 2.818921 TGCCTTTGGATATGCCTTTGT 58.181 42.857 0.00 0.00 37.63 2.83
367 372 1.698532 TGGTGCAAAATGCCTTTGGAT 59.301 42.857 9.64 0.00 45.71 3.41
368 373 1.126488 TGGTGCAAAATGCCTTTGGA 58.874 45.000 9.64 4.85 44.23 3.53
380 385 1.071128 GCCTTTGCCAATGGTGCAA 59.929 52.632 10.69 0.00 46.30 4.08
381 386 2.138831 TGCCTTTGCCAATGGTGCA 61.139 52.632 10.69 0.00 36.33 4.57
432 437 9.677567 AAATACAATAATGAACTGTTCACACAC 57.322 29.630 24.17 0.00 43.48 3.82
564 571 9.890629 ATTTGACACATACTCACATATTACACT 57.109 29.630 0.00 0.00 0.00 3.55
651 662 2.051345 GTTTTGCCGGCTCACACG 60.051 61.111 29.70 0.00 0.00 4.49
652 663 2.051345 CGTTTTGCCGGCTCACAC 60.051 61.111 29.70 17.23 0.00 3.82
653 664 3.959975 GCGTTTTGCCGGCTCACA 61.960 61.111 29.70 3.37 37.76 3.58
656 667 3.817274 AAACGCGTTTTGCCGGCTC 62.817 57.895 30.36 14.07 42.08 4.70
657 668 2.061182 TAAAACGCGTTTTGCCGGCT 62.061 50.000 43.89 27.46 42.18 5.52
658 669 1.657794 TAAAACGCGTTTTGCCGGC 60.658 52.632 43.89 22.73 42.18 6.13
659 670 1.590004 CGTAAAACGCGTTTTGCCGG 61.590 55.000 43.89 31.43 42.18 6.13
660 671 1.755995 CGTAAAACGCGTTTTGCCG 59.244 52.632 43.89 38.83 42.18 5.69
670 681 4.144448 CGTGTTTAAAGTTCGCGTAAAACG 60.144 41.667 5.77 11.35 45.88 3.60
671 682 4.371961 GCGTGTTTAAAGTTCGCGTAAAAC 60.372 41.667 5.77 3.08 37.74 2.43
672 683 3.718377 GCGTGTTTAAAGTTCGCGTAAAA 59.282 39.130 5.77 0.00 37.74 1.52
673 684 3.279126 GCGTGTTTAAAGTTCGCGTAAA 58.721 40.909 5.77 0.00 37.74 2.01
674 685 2.890171 GCGTGTTTAAAGTTCGCGTAA 58.110 42.857 5.77 0.00 37.74 3.18
675 686 2.558594 GCGTGTTTAAAGTTCGCGTA 57.441 45.000 5.77 0.00 37.74 4.42
676 687 3.426008 GCGTGTTTAAAGTTCGCGT 57.574 47.368 5.77 0.00 37.74 6.01
678 689 2.221799 ATCGCGTGTTTAAAGTTCGC 57.778 45.000 5.77 16.37 42.78 4.70
679 690 4.779523 CCTTTATCGCGTGTTTAAAGTTCG 59.220 41.667 21.39 10.82 33.21 3.95
680 691 5.562623 CACCTTTATCGCGTGTTTAAAGTTC 59.437 40.000 21.39 0.00 33.21 3.01
681 692 5.007921 ACACCTTTATCGCGTGTTTAAAGTT 59.992 36.000 21.39 12.35 37.45 2.66
682 693 4.512571 ACACCTTTATCGCGTGTTTAAAGT 59.487 37.500 21.39 13.08 37.45 2.66
683 694 4.843984 CACACCTTTATCGCGTGTTTAAAG 59.156 41.667 18.69 18.69 38.65 1.85
684 695 4.774586 CACACCTTTATCGCGTGTTTAAA 58.225 39.130 5.77 6.13 38.65 1.52
685 696 3.364167 GCACACCTTTATCGCGTGTTTAA 60.364 43.478 5.77 0.00 38.65 1.52
686 697 2.158058 GCACACCTTTATCGCGTGTTTA 59.842 45.455 5.77 0.00 38.65 2.01
687 698 1.069500 GCACACCTTTATCGCGTGTTT 60.069 47.619 5.77 0.00 38.65 2.83
688 699 0.515564 GCACACCTTTATCGCGTGTT 59.484 50.000 5.77 0.00 38.65 3.32
689 700 0.320421 AGCACACCTTTATCGCGTGT 60.320 50.000 5.77 0.00 41.30 4.49
690 701 1.588404 CTAGCACACCTTTATCGCGTG 59.412 52.381 5.77 0.00 0.00 5.34
691 702 1.475280 TCTAGCACACCTTTATCGCGT 59.525 47.619 5.77 0.00 0.00 6.01
692 703 2.120232 CTCTAGCACACCTTTATCGCG 58.880 52.381 0.00 0.00 0.00 5.87
693 704 3.438297 TCTCTAGCACACCTTTATCGC 57.562 47.619 0.00 0.00 0.00 4.58
694 705 3.738282 GCATCTCTAGCACACCTTTATCG 59.262 47.826 0.00 0.00 0.00 2.92
695 706 4.749099 CAGCATCTCTAGCACACCTTTATC 59.251 45.833 0.00 0.00 0.00 1.75
696 707 4.163078 ACAGCATCTCTAGCACACCTTTAT 59.837 41.667 0.00 0.00 0.00 1.40
697 708 3.515502 ACAGCATCTCTAGCACACCTTTA 59.484 43.478 0.00 0.00 0.00 1.85
698 709 2.304180 ACAGCATCTCTAGCACACCTTT 59.696 45.455 0.00 0.00 0.00 3.11
699 710 1.905215 ACAGCATCTCTAGCACACCTT 59.095 47.619 0.00 0.00 0.00 3.50
700 711 1.566211 ACAGCATCTCTAGCACACCT 58.434 50.000 0.00 0.00 0.00 4.00
701 712 3.118956 ACTTACAGCATCTCTAGCACACC 60.119 47.826 0.00 0.00 0.00 4.16
702 713 4.116747 ACTTACAGCATCTCTAGCACAC 57.883 45.455 0.00 0.00 0.00 3.82
703 714 4.950475 AGTACTTACAGCATCTCTAGCACA 59.050 41.667 0.00 0.00 0.00 4.57
704 715 5.277825 CAGTACTTACAGCATCTCTAGCAC 58.722 45.833 0.00 0.00 0.00 4.40
705 716 4.202060 GCAGTACTTACAGCATCTCTAGCA 60.202 45.833 0.00 0.00 38.41 3.49
706 717 4.295051 GCAGTACTTACAGCATCTCTAGC 58.705 47.826 0.00 0.00 38.41 3.42
707 718 4.532276 CGCAGTACTTACAGCATCTCTAG 58.468 47.826 0.00 0.00 38.44 2.43
708 719 3.243101 GCGCAGTACTTACAGCATCTCTA 60.243 47.826 0.30 0.00 38.44 2.43
709 720 2.480416 GCGCAGTACTTACAGCATCTCT 60.480 50.000 0.30 0.00 38.44 3.10
710 721 1.855360 GCGCAGTACTTACAGCATCTC 59.145 52.381 0.30 0.00 38.44 2.75
711 722 1.799181 CGCGCAGTACTTACAGCATCT 60.799 52.381 8.75 0.00 38.44 2.90
712 723 0.572590 CGCGCAGTACTTACAGCATC 59.427 55.000 8.75 0.00 38.44 3.91
713 724 1.421410 GCGCGCAGTACTTACAGCAT 61.421 55.000 29.10 0.00 38.44 3.79
714 725 2.092291 GCGCGCAGTACTTACAGCA 61.092 57.895 29.10 0.00 38.44 4.41
715 726 2.695646 GCGCGCAGTACTTACAGC 59.304 61.111 29.10 0.00 35.65 4.40
716 727 2.987593 CGCGCGCAGTACTTACAG 59.012 61.111 32.61 6.38 0.00 2.74
717 728 3.176578 GCGCGCGCAGTACTTACA 61.177 61.111 46.11 0.00 41.49 2.41
734 745 3.710722 ACTGCCTCTCCCCGCAAG 61.711 66.667 0.00 0.00 33.87 4.01
735 746 4.020617 CACTGCCTCTCCCCGCAA 62.021 66.667 0.00 0.00 33.87 4.85
738 749 2.363795 TACCACTGCCTCTCCCCG 60.364 66.667 0.00 0.00 0.00 5.73
759 770 4.816385 AGTATAGGCATCATTTTCACGTGG 59.184 41.667 17.00 0.00 0.00 4.94
768 779 4.689612 ACAACCGAGTATAGGCATCATT 57.310 40.909 0.00 0.00 32.08 2.57
775 786 5.862323 CCGAATGATAACAACCGAGTATAGG 59.138 44.000 0.00 0.00 36.68 2.57
776 787 5.345202 GCCGAATGATAACAACCGAGTATAG 59.655 44.000 0.00 0.00 0.00 1.31
777 788 5.224888 GCCGAATGATAACAACCGAGTATA 58.775 41.667 0.00 0.00 0.00 1.47
784 798 1.014352 AGCGCCGAATGATAACAACC 58.986 50.000 2.29 0.00 0.00 3.77
791 805 2.434658 TATCGCCAGCGCCGAATGAT 62.435 55.000 11.13 7.95 38.31 2.45
792 806 3.145422 TATCGCCAGCGCCGAATGA 62.145 57.895 11.13 0.45 38.31 2.57
793 807 2.661537 TATCGCCAGCGCCGAATG 60.662 61.111 11.13 0.00 38.31 2.67
794 808 2.356313 CTATCGCCAGCGCCGAAT 60.356 61.111 11.13 0.00 38.31 3.34
810 824 1.131638 TGCTTCAGTGTTCAGTCCCT 58.868 50.000 0.00 0.00 0.00 4.20
858 876 3.314331 CAGGGACAGCTCACGGGT 61.314 66.667 0.00 0.00 0.00 5.28
890 908 3.158676 GGATAGTCCCACTCGATAAGCT 58.841 50.000 0.00 0.00 0.00 3.74
898 916 2.467880 TCCAACTGGATAGTCCCACTC 58.532 52.381 0.00 0.00 39.78 3.51
899 917 2.642171 TCCAACTGGATAGTCCCACT 57.358 50.000 0.00 0.00 39.78 4.00
910 928 5.820423 TGTGTCGGAATTTATATCCAACTGG 59.180 40.000 0.00 0.00 36.74 4.00
915 933 6.411376 AGTGTTGTGTCGGAATTTATATCCA 58.589 36.000 0.00 0.00 36.74 3.41
916 934 6.018180 GGAGTGTTGTGTCGGAATTTATATCC 60.018 42.308 0.00 0.00 0.00 2.59
926 944 0.387929 GTGAGGAGTGTTGTGTCGGA 59.612 55.000 0.00 0.00 0.00 4.55
934 952 2.390225 ACTGAGGAGTGAGGAGTGTT 57.610 50.000 0.00 0.00 0.00 3.32
945 963 1.134580 ACGATGGATTGCACTGAGGAG 60.135 52.381 0.00 0.00 0.00 3.69
946 964 0.904649 ACGATGGATTGCACTGAGGA 59.095 50.000 0.00 0.00 0.00 3.71
947 965 2.477825 CTACGATGGATTGCACTGAGG 58.522 52.381 0.00 0.00 0.00 3.86
948 966 1.863454 GCTACGATGGATTGCACTGAG 59.137 52.381 0.00 0.00 0.00 3.35
949 967 1.482182 AGCTACGATGGATTGCACTGA 59.518 47.619 0.00 0.00 0.00 3.41
950 968 1.945387 AGCTACGATGGATTGCACTG 58.055 50.000 0.00 0.00 0.00 3.66
951 969 2.959030 TCTAGCTACGATGGATTGCACT 59.041 45.455 0.00 0.00 0.00 4.40
952 970 3.053455 GTCTAGCTACGATGGATTGCAC 58.947 50.000 0.00 0.00 0.00 4.57
1327 1357 0.238289 GACGGGTACTTGTCGTCGAA 59.762 55.000 0.00 0.00 42.60 3.71
1381 1411 2.660552 CGTGTTCACGGCGAAGGT 60.661 61.111 16.62 0.00 33.09 3.50
1671 1702 1.141881 CTCCATCGGGTTGGTCTCG 59.858 63.158 0.00 0.00 42.07 4.04
1705 1736 3.853330 CACCGGCGCGATGTCTTG 61.853 66.667 12.10 0.00 0.00 3.02
1858 1889 5.438821 CGTTTATACGGAACAAATCACGA 57.561 39.130 0.00 0.00 43.94 4.35
1883 1914 6.851222 ATTATTGTCATCAATCGGTCTGAC 57.149 37.500 0.00 0.00 42.45 3.51
1890 1921 7.329226 GCCCCAATTTATTATTGTCATCAATCG 59.671 37.037 0.00 0.00 42.45 3.34
1953 1986 8.738645 AGGAATATTGTTTGAGGAGAACATAC 57.261 34.615 0.00 0.00 36.92 2.39
1960 1993 9.618890 TGAGATTTAGGAATATTGTTTGAGGAG 57.381 33.333 0.00 0.00 0.00 3.69
1962 1995 9.401058 ACTGAGATTTAGGAATATTGTTTGAGG 57.599 33.333 0.00 0.00 0.00 3.86
2033 2073 8.253810 ACGATGTTGATCTAAATTCTCTCTTCA 58.746 33.333 0.00 0.00 0.00 3.02
2035 2075 7.433719 CGACGATGTTGATCTAAATTCTCTCTT 59.566 37.037 0.00 0.00 0.00 2.85
2042 2082 7.596749 AGAAACGACGATGTTGATCTAAATT 57.403 32.000 0.00 0.00 31.10 1.82
2082 2122 3.584406 TCGGCTGAGATGGAAATATGGAT 59.416 43.478 0.00 0.00 0.00 3.41
2086 2126 9.167311 GTTTTATATCGGCTGAGATGGAAATAT 57.833 33.333 12.99 0.00 32.39 1.28
2087 2127 8.375506 AGTTTTATATCGGCTGAGATGGAAATA 58.624 33.333 12.99 0.00 32.39 1.40
2109 2149 4.597507 TGTCCAAAGGTCATAGAGGAGTTT 59.402 41.667 0.00 0.00 0.00 2.66
2113 2153 3.516586 TGTGTCCAAAGGTCATAGAGGA 58.483 45.455 0.00 0.00 0.00 3.71
2125 2165 2.535012 TCTGCGTACATGTGTCCAAA 57.465 45.000 9.11 0.00 0.00 3.28
2249 2373 4.865365 GCAGAACTTATCGCTTCTAACTGT 59.135 41.667 0.00 0.00 0.00 3.55
2252 2376 4.260011 GCTGCAGAACTTATCGCTTCTAAC 60.260 45.833 20.43 0.00 0.00 2.34
2254 2378 3.119137 TGCTGCAGAACTTATCGCTTCTA 60.119 43.478 20.43 0.00 0.00 2.10
2256 2380 2.002586 TGCTGCAGAACTTATCGCTTC 58.997 47.619 20.43 0.00 0.00 3.86
2259 2383 1.527793 CGTTGCTGCAGAACTTATCGC 60.528 52.381 20.43 0.00 0.00 4.58
2261 2385 2.076863 ACCGTTGCTGCAGAACTTATC 58.923 47.619 20.43 0.00 0.00 1.75
2270 2394 1.764571 AACCTCCTACCGTTGCTGCA 61.765 55.000 0.00 0.00 0.00 4.41
2300 2424 0.686441 TAGGGGATAGCACTGCGTGT 60.686 55.000 9.76 0.00 35.75 4.49
2318 2442 1.479323 CTTCACCGAACGGAGGGAATA 59.521 52.381 20.14 0.71 38.96 1.75
2319 2443 0.249398 CTTCACCGAACGGAGGGAAT 59.751 55.000 20.14 0.00 38.96 3.01
2320 2444 0.828762 TCTTCACCGAACGGAGGGAA 60.829 55.000 20.14 16.58 38.96 3.97
2321 2445 1.228644 TCTTCACCGAACGGAGGGA 60.229 57.895 20.14 10.82 38.96 4.20
2322 2446 1.215647 CTCTTCACCGAACGGAGGG 59.784 63.158 20.14 3.15 38.96 4.30
2323 2447 0.388649 CACTCTTCACCGAACGGAGG 60.389 60.000 20.14 11.11 38.96 4.30
2324 2448 0.314302 ACACTCTTCACCGAACGGAG 59.686 55.000 20.14 12.14 38.96 4.63
2325 2449 1.267806 GTACACTCTTCACCGAACGGA 59.732 52.381 20.14 0.00 38.96 4.69
2326 2450 1.694639 GTACACTCTTCACCGAACGG 58.305 55.000 11.83 11.83 42.03 4.44
2327 2451 1.324718 CGTACACTCTTCACCGAACG 58.675 55.000 0.00 0.00 0.00 3.95
2328 2452 2.412421 ACGTACACTCTTCACCGAAC 57.588 50.000 0.00 0.00 0.00 3.95
2329 2453 3.117794 CAAACGTACACTCTTCACCGAA 58.882 45.455 0.00 0.00 0.00 4.30
2330 2454 2.544277 CCAAACGTACACTCTTCACCGA 60.544 50.000 0.00 0.00 0.00 4.69
2331 2455 1.790623 CCAAACGTACACTCTTCACCG 59.209 52.381 0.00 0.00 0.00 4.94
2332 2456 2.140717 CCCAAACGTACACTCTTCACC 58.859 52.381 0.00 0.00 0.00 4.02
2333 2457 2.830104 ACCCAAACGTACACTCTTCAC 58.170 47.619 0.00 0.00 0.00 3.18
2334 2458 3.547054 AACCCAAACGTACACTCTTCA 57.453 42.857 0.00 0.00 0.00 3.02
2335 2459 5.989551 TTAAACCCAAACGTACACTCTTC 57.010 39.130 0.00 0.00 0.00 2.87
2336 2460 6.756299 TTTTAAACCCAAACGTACACTCTT 57.244 33.333 0.00 0.00 0.00 2.85
2337 2461 6.947644 ATTTTAAACCCAAACGTACACTCT 57.052 33.333 0.00 0.00 0.00 3.24
2338 2462 7.488792 ACAAATTTTAAACCCAAACGTACACTC 59.511 33.333 0.00 0.00 0.00 3.51
2339 2463 7.321908 ACAAATTTTAAACCCAAACGTACACT 58.678 30.769 0.00 0.00 0.00 3.55
2340 2464 7.254050 GGACAAATTTTAAACCCAAACGTACAC 60.254 37.037 0.00 0.00 0.00 2.90
2341 2465 6.755607 GGACAAATTTTAAACCCAAACGTACA 59.244 34.615 0.00 0.00 0.00 2.90
2342 2466 6.755607 TGGACAAATTTTAAACCCAAACGTAC 59.244 34.615 0.00 0.00 0.00 3.67
2343 2467 6.870769 TGGACAAATTTTAAACCCAAACGTA 58.129 32.000 0.00 0.00 0.00 3.57
2344 2468 5.731591 TGGACAAATTTTAAACCCAAACGT 58.268 33.333 0.00 0.00 0.00 3.99
2345 2469 6.852858 ATGGACAAATTTTAAACCCAAACG 57.147 33.333 0.00 0.00 0.00 3.60
2371 2495 9.860898 GCATTGGAAAGATAGAAATACACTTTT 57.139 29.630 0.00 0.00 32.20 2.27
2372 2496 9.023962 TGCATTGGAAAGATAGAAATACACTTT 57.976 29.630 0.00 0.00 34.24 2.66
2373 2497 8.579850 TGCATTGGAAAGATAGAAATACACTT 57.420 30.769 0.00 0.00 0.00 3.16
2374 2498 8.757982 ATGCATTGGAAAGATAGAAATACACT 57.242 30.769 0.00 0.00 0.00 3.55
2375 2499 9.807649 AAATGCATTGGAAAGATAGAAATACAC 57.192 29.630 13.82 0.00 0.00 2.90
2386 2510 9.612066 AGAAAACTTTAAAATGCATTGGAAAGA 57.388 25.926 32.62 13.44 31.70 2.52
2387 2511 9.868389 GAGAAAACTTTAAAATGCATTGGAAAG 57.132 29.630 28.26 28.26 32.66 2.62
2388 2512 9.612066 AGAGAAAACTTTAAAATGCATTGGAAA 57.388 25.926 13.82 14.47 0.00 3.13
2389 2513 9.260002 GAGAGAAAACTTTAAAATGCATTGGAA 57.740 29.630 13.82 7.42 0.00 3.53
2390 2514 8.420222 TGAGAGAAAACTTTAAAATGCATTGGA 58.580 29.630 13.82 0.56 0.00 3.53
2391 2515 8.592105 TGAGAGAAAACTTTAAAATGCATTGG 57.408 30.769 13.82 4.14 0.00 3.16
2393 2517 9.985730 TGATGAGAGAAAACTTTAAAATGCATT 57.014 25.926 5.99 5.99 0.00 3.56
2394 2518 9.415544 GTGATGAGAGAAAACTTTAAAATGCAT 57.584 29.630 0.00 0.00 0.00 3.96
2395 2519 8.412456 TGTGATGAGAGAAAACTTTAAAATGCA 58.588 29.630 0.00 0.00 0.00 3.96
2396 2520 8.694394 GTGTGATGAGAGAAAACTTTAAAATGC 58.306 33.333 0.00 0.00 0.00 3.56
2397 2521 8.895845 CGTGTGATGAGAGAAAACTTTAAAATG 58.104 33.333 0.00 0.00 0.00 2.32
2398 2522 8.076178 CCGTGTGATGAGAGAAAACTTTAAAAT 58.924 33.333 0.00 0.00 0.00 1.82
2399 2523 7.066525 ACCGTGTGATGAGAGAAAACTTTAAAA 59.933 33.333 0.00 0.00 0.00 1.52
2400 2524 6.540914 ACCGTGTGATGAGAGAAAACTTTAAA 59.459 34.615 0.00 0.00 0.00 1.52
2401 2525 6.053005 ACCGTGTGATGAGAGAAAACTTTAA 58.947 36.000 0.00 0.00 0.00 1.52
2402 2526 5.607477 ACCGTGTGATGAGAGAAAACTTTA 58.393 37.500 0.00 0.00 0.00 1.85
2403 2527 4.451900 ACCGTGTGATGAGAGAAAACTTT 58.548 39.130 0.00 0.00 0.00 2.66
2404 2528 4.073293 ACCGTGTGATGAGAGAAAACTT 57.927 40.909 0.00 0.00 0.00 2.66
2405 2529 3.753294 ACCGTGTGATGAGAGAAAACT 57.247 42.857 0.00 0.00 0.00 2.66
2406 2530 5.637810 TGATTACCGTGTGATGAGAGAAAAC 59.362 40.000 0.00 0.00 0.00 2.43
2407 2531 5.789521 TGATTACCGTGTGATGAGAGAAAA 58.210 37.500 0.00 0.00 0.00 2.29
2408 2532 5.400066 TGATTACCGTGTGATGAGAGAAA 57.600 39.130 0.00 0.00 0.00 2.52
2409 2533 5.185056 TCTTGATTACCGTGTGATGAGAGAA 59.815 40.000 0.00 0.00 0.00 2.87
2410 2534 4.705023 TCTTGATTACCGTGTGATGAGAGA 59.295 41.667 0.00 0.00 0.00 3.10
2411 2535 4.800993 GTCTTGATTACCGTGTGATGAGAG 59.199 45.833 0.00 0.00 0.00 3.20
2412 2536 4.381612 GGTCTTGATTACCGTGTGATGAGA 60.382 45.833 0.00 0.00 0.00 3.27
2413 2537 3.865745 GGTCTTGATTACCGTGTGATGAG 59.134 47.826 0.00 0.00 0.00 2.90
2414 2538 3.259625 TGGTCTTGATTACCGTGTGATGA 59.740 43.478 0.00 0.00 40.08 2.92
2415 2539 3.595173 TGGTCTTGATTACCGTGTGATG 58.405 45.455 0.00 0.00 40.08 3.07
2416 2540 3.973206 TGGTCTTGATTACCGTGTGAT 57.027 42.857 0.00 0.00 40.08 3.06
2417 2541 3.755112 TTGGTCTTGATTACCGTGTGA 57.245 42.857 0.00 0.00 40.08 3.58
2418 2542 6.677781 ATTATTGGTCTTGATTACCGTGTG 57.322 37.500 0.00 0.00 40.08 3.82
2419 2543 8.974060 AATATTATTGGTCTTGATTACCGTGT 57.026 30.769 0.00 0.00 40.08 4.49
2466 2590 9.113838 CCAATGAGCTAAGTACATGTAGAAATT 57.886 33.333 5.62 2.16 0.00 1.82
2467 2591 8.486210 TCCAATGAGCTAAGTACATGTAGAAAT 58.514 33.333 5.62 0.00 0.00 2.17
2468 2592 7.847096 TCCAATGAGCTAAGTACATGTAGAAA 58.153 34.615 5.62 0.00 0.00 2.52
2469 2593 7.417911 CCTCCAATGAGCTAAGTACATGTAGAA 60.418 40.741 5.62 0.00 37.29 2.10
2470 2594 6.040955 CCTCCAATGAGCTAAGTACATGTAGA 59.959 42.308 5.62 0.00 37.29 2.59
2471 2595 6.183360 ACCTCCAATGAGCTAAGTACATGTAG 60.183 42.308 5.62 0.00 37.29 2.74
2472 2596 5.661312 ACCTCCAATGAGCTAAGTACATGTA 59.339 40.000 0.08 0.08 37.29 2.29
2473 2597 4.471386 ACCTCCAATGAGCTAAGTACATGT 59.529 41.667 2.69 2.69 37.29 3.21
2474 2598 5.028549 ACCTCCAATGAGCTAAGTACATG 57.971 43.478 0.00 0.00 37.29 3.21
2475 2599 5.700402 AACCTCCAATGAGCTAAGTACAT 57.300 39.130 0.00 0.00 37.29 2.29
2476 2600 5.955959 TCTAACCTCCAATGAGCTAAGTACA 59.044 40.000 0.00 0.00 37.29 2.90
2477 2601 6.466885 TCTAACCTCCAATGAGCTAAGTAC 57.533 41.667 0.00 0.00 37.29 2.73
2478 2602 8.777578 TTATCTAACCTCCAATGAGCTAAGTA 57.222 34.615 0.00 0.00 37.29 2.24
2479 2603 7.676683 TTATCTAACCTCCAATGAGCTAAGT 57.323 36.000 0.00 0.00 37.29 2.24
2483 2607 9.920946 TTTTAATTATCTAACCTCCAATGAGCT 57.079 29.630 0.00 0.00 37.29 4.09
2502 2626 9.143155 ACACCACTATCTTTGTCCTTTTTAATT 57.857 29.630 0.00 0.00 0.00 1.40
2503 2627 8.576442 CACACCACTATCTTTGTCCTTTTTAAT 58.424 33.333 0.00 0.00 0.00 1.40
2504 2628 7.469456 GCACACCACTATCTTTGTCCTTTTTAA 60.469 37.037 0.00 0.00 0.00 1.52
2505 2629 6.016610 GCACACCACTATCTTTGTCCTTTTTA 60.017 38.462 0.00 0.00 0.00 1.52
2506 2630 5.221244 GCACACCACTATCTTTGTCCTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
2507 2631 4.278419 GCACACCACTATCTTTGTCCTTTT 59.722 41.667 0.00 0.00 0.00 2.27
2508 2632 3.821033 GCACACCACTATCTTTGTCCTTT 59.179 43.478 0.00 0.00 0.00 3.11
2509 2633 3.181445 TGCACACCACTATCTTTGTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
2510 2634 2.371841 TGCACACCACTATCTTTGTCCT 59.628 45.455 0.00 0.00 0.00 3.85
2511 2635 2.778299 TGCACACCACTATCTTTGTCC 58.222 47.619 0.00 0.00 0.00 4.02
2512 2636 4.256920 AGATGCACACCACTATCTTTGTC 58.743 43.478 0.00 0.00 0.00 3.18
2513 2637 4.292186 AGATGCACACCACTATCTTTGT 57.708 40.909 0.00 0.00 0.00 2.83
2514 2638 4.095483 GGAAGATGCACACCACTATCTTTG 59.905 45.833 0.00 0.00 39.31 2.77
2515 2639 4.265073 GGAAGATGCACACCACTATCTTT 58.735 43.478 0.00 0.00 39.31 2.52
2516 2640 3.370953 GGGAAGATGCACACCACTATCTT 60.371 47.826 0.00 0.00 41.24 2.40
2517 2641 2.171448 GGGAAGATGCACACCACTATCT 59.829 50.000 0.00 0.00 0.00 1.98
2518 2642 2.092968 TGGGAAGATGCACACCACTATC 60.093 50.000 0.00 0.00 0.00 2.08
2519 2643 1.915489 TGGGAAGATGCACACCACTAT 59.085 47.619 0.00 0.00 0.00 2.12
2520 2644 1.357137 TGGGAAGATGCACACCACTA 58.643 50.000 0.00 0.00 0.00 2.74
2521 2645 0.478072 TTGGGAAGATGCACACCACT 59.522 50.000 0.00 0.00 0.00 4.00
2522 2646 1.203052 CATTGGGAAGATGCACACCAC 59.797 52.381 0.00 0.00 0.00 4.16
2523 2647 1.548081 CATTGGGAAGATGCACACCA 58.452 50.000 0.00 0.00 0.00 4.17
2524 2648 0.174162 GCATTGGGAAGATGCACACC 59.826 55.000 4.35 0.00 46.96 4.16
2525 2649 3.727419 GCATTGGGAAGATGCACAC 57.273 52.632 4.35 0.00 46.96 3.82
2530 2654 6.038356 GTGTAGAAAATGCATTGGGAAGATG 58.962 40.000 13.82 0.00 0.00 2.90
2531 2655 5.954150 AGTGTAGAAAATGCATTGGGAAGAT 59.046 36.000 13.82 0.00 0.00 2.40
2532 2656 5.324409 AGTGTAGAAAATGCATTGGGAAGA 58.676 37.500 13.82 0.00 0.00 2.87
2533 2657 5.393461 GGAGTGTAGAAAATGCATTGGGAAG 60.393 44.000 13.82 0.00 0.00 3.46
2534 2658 4.462483 GGAGTGTAGAAAATGCATTGGGAA 59.538 41.667 13.82 0.00 0.00 3.97
2535 2659 4.016444 GGAGTGTAGAAAATGCATTGGGA 58.984 43.478 13.82 0.00 0.00 4.37
2536 2660 3.763360 TGGAGTGTAGAAAATGCATTGGG 59.237 43.478 13.82 0.00 0.00 4.12
2537 2661 5.587388 ATGGAGTGTAGAAAATGCATTGG 57.413 39.130 13.82 0.00 0.00 3.16
2538 2662 9.590451 AAATTATGGAGTGTAGAAAATGCATTG 57.410 29.630 13.82 0.00 0.00 2.82
2539 2663 9.590451 CAAATTATGGAGTGTAGAAAATGCATT 57.410 29.630 5.99 5.99 0.00 3.56
2540 2664 8.752187 ACAAATTATGGAGTGTAGAAAATGCAT 58.248 29.630 0.00 0.00 0.00 3.96
2541 2665 8.121305 ACAAATTATGGAGTGTAGAAAATGCA 57.879 30.769 0.00 0.00 0.00 3.96
2542 2666 9.503427 GTACAAATTATGGAGTGTAGAAAATGC 57.497 33.333 0.00 0.00 0.00 3.56
2571 2695 8.504005 CGGTGAAAAGTGTACATCTAAGAATTT 58.496 33.333 0.00 0.00 0.00 1.82
2572 2696 7.119262 CCGGTGAAAAGTGTACATCTAAGAATT 59.881 37.037 0.00 0.00 0.00 2.17
2573 2697 6.594159 CCGGTGAAAAGTGTACATCTAAGAAT 59.406 38.462 0.00 0.00 0.00 2.40
2574 2698 5.929992 CCGGTGAAAAGTGTACATCTAAGAA 59.070 40.000 0.00 0.00 0.00 2.52
2575 2699 5.244402 TCCGGTGAAAAGTGTACATCTAAGA 59.756 40.000 0.00 0.00 0.00 2.10
2576 2700 5.475719 TCCGGTGAAAAGTGTACATCTAAG 58.524 41.667 0.00 0.00 0.00 2.18
2577 2701 5.471556 TCCGGTGAAAAGTGTACATCTAA 57.528 39.130 0.00 0.00 0.00 2.10
2578 2702 4.081862 CCTCCGGTGAAAAGTGTACATCTA 60.082 45.833 4.76 0.00 0.00 1.98
2579 2703 3.306780 CCTCCGGTGAAAAGTGTACATCT 60.307 47.826 4.76 0.00 0.00 2.90
2580 2704 3.000727 CCTCCGGTGAAAAGTGTACATC 58.999 50.000 4.76 0.00 0.00 3.06
2581 2705 2.290071 CCCTCCGGTGAAAAGTGTACAT 60.290 50.000 4.76 0.00 0.00 2.29
2582 2706 1.071071 CCCTCCGGTGAAAAGTGTACA 59.929 52.381 4.76 0.00 0.00 2.90
2583 2707 1.345415 TCCCTCCGGTGAAAAGTGTAC 59.655 52.381 4.76 0.00 0.00 2.90
2584 2708 1.621814 CTCCCTCCGGTGAAAAGTGTA 59.378 52.381 4.76 0.00 0.00 2.90
2585 2709 0.396811 CTCCCTCCGGTGAAAAGTGT 59.603 55.000 4.76 0.00 0.00 3.55
2586 2710 0.396811 ACTCCCTCCGGTGAAAAGTG 59.603 55.000 4.76 0.00 0.00 3.16
2587 2711 1.622312 GTACTCCCTCCGGTGAAAAGT 59.378 52.381 4.76 7.71 0.00 2.66
2588 2712 1.621814 TGTACTCCCTCCGGTGAAAAG 59.378 52.381 4.76 1.95 0.00 2.27
2589 2713 1.345415 GTGTACTCCCTCCGGTGAAAA 59.655 52.381 4.76 0.00 0.00 2.29
2590 2714 0.971386 GTGTACTCCCTCCGGTGAAA 59.029 55.000 4.76 0.00 0.00 2.69
2591 2715 0.901580 GGTGTACTCCCTCCGGTGAA 60.902 60.000 4.76 0.00 0.00 3.18
2592 2716 1.304713 GGTGTACTCCCTCCGGTGA 60.305 63.158 4.76 0.00 0.00 4.02
2593 2717 2.356780 GGGTGTACTCCCTCCGGTG 61.357 68.421 23.22 0.00 43.85 4.94
2594 2718 2.038490 GGGTGTACTCCCTCCGGT 59.962 66.667 23.22 0.00 43.85 5.28
2601 2725 1.154197 GCGAACTTTGGGTGTACTCC 58.846 55.000 5.35 5.35 0.00 3.85
2602 2726 2.165319 AGCGAACTTTGGGTGTACTC 57.835 50.000 0.00 0.00 0.00 2.59
2603 2727 3.756933 TTAGCGAACTTTGGGTGTACT 57.243 42.857 0.00 0.00 0.00 2.73
2604 2728 3.560896 TGTTTAGCGAACTTTGGGTGTAC 59.439 43.478 7.38 0.00 39.08 2.90
2611 2735 6.141685 GGTTGTGTATTGTTTAGCGAACTTTG 59.858 38.462 7.38 0.00 39.08 2.77
2632 2756 8.833231 AATTACTCGTGAATAGGATATGGTTG 57.167 34.615 0.00 0.00 0.00 3.77
2734 2858 1.611977 CAGCGATTATGGACGGGTCTA 59.388 52.381 0.00 0.00 0.00 2.59
2769 2893 9.832445 CCTGCCAATTTTAATCTAGTCTAACTA 57.168 33.333 0.00 0.00 0.00 2.24
2773 2897 5.758296 CGCCTGCCAATTTTAATCTAGTCTA 59.242 40.000 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.