Multiple sequence alignment - TraesCS5A01G495400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G495400 chr5A 100.000 2336 0 0 1 2336 663377240 663374905 0.000000e+00 4314.0
1 TraesCS5A01G495400 chr4B 88.554 961 70 21 957 1896 613905634 613906575 0.000000e+00 1129.0
2 TraesCS5A01G495400 chr4B 87.603 484 30 13 1 463 613904904 613905378 3.420000e-148 534.0
3 TraesCS5A01G495400 chr4B 97.468 79 0 1 2136 2214 613906617 613906693 1.460000e-27 134.0
4 TraesCS5A01G495400 chr4B 93.056 72 4 1 2264 2334 613906709 613906780 1.140000e-18 104.0
5 TraesCS5A01G495400 chr4B 95.556 45 2 0 2226 2270 385037013 385037057 3.220000e-09 73.1
6 TraesCS5A01G495400 chr4B 93.617 47 2 1 2226 2271 623124084 623124130 4.170000e-08 69.4
7 TraesCS5A01G495400 chr4D 86.847 996 63 35 837 1782 483180044 483179067 0.000000e+00 1051.0
8 TraesCS5A01G495400 chr4D 93.075 361 19 3 108 466 483180509 483180153 7.400000e-145 523.0
9 TraesCS5A01G495400 chr7B 82.000 150 25 2 1892 2040 740450817 740450965 2.440000e-25 126.0
10 TraesCS5A01G495400 chr7B 81.333 150 26 2 1892 2040 740445411 740445559 1.130000e-23 121.0
11 TraesCS5A01G495400 chr7B 81.333 150 26 2 1892 2040 740447213 740447361 1.130000e-23 121.0
12 TraesCS5A01G495400 chr7B 81.333 150 26 2 1892 2040 740452619 740452767 1.130000e-23 121.0
13 TraesCS5A01G495400 chr7B 81.333 150 26 2 1892 2040 740454421 740454569 1.130000e-23 121.0
14 TraesCS5A01G495400 chr7B 95.455 44 2 0 2226 2269 3887282 3887325 1.160000e-08 71.3
15 TraesCS5A01G495400 chr6D 81.633 147 20 7 1897 2040 455559866 455560008 5.280000e-22 115.0
16 TraesCS5A01G495400 chr6D 95.455 44 0 2 1741 1783 80713707 80713749 4.170000e-08 69.4
17 TraesCS5A01G495400 chr5D 81.944 144 18 7 1901 2040 327731803 327731942 5.280000e-22 115.0
18 TraesCS5A01G495400 chr2D 81.757 148 17 10 1897 2040 564441194 564441053 5.280000e-22 115.0
19 TraesCS5A01G495400 chr2D 95.556 45 1 1 2226 2270 272263103 272263060 1.160000e-08 71.3
20 TraesCS5A01G495400 chr5B 80.667 150 23 5 1895 2040 665186725 665186872 6.820000e-21 111.0
21 TraesCS5A01G495400 chr5B 95.556 45 2 0 2226 2270 228061880 228061836 3.220000e-09 73.1
22 TraesCS5A01G495400 chr3B 95.455 44 2 0 2226 2269 5645734 5645691 1.160000e-08 71.3
23 TraesCS5A01G495400 chr2B 95.556 45 1 1 2226 2269 151465466 151465510 1.160000e-08 71.3
24 TraesCS5A01G495400 chr2B 93.617 47 3 0 2226 2272 161416259 161416213 1.160000e-08 71.3
25 TraesCS5A01G495400 chr1B 93.478 46 3 0 2226 2271 359907279 359907234 4.170000e-08 69.4
26 TraesCS5A01G495400 chr6B 93.023 43 3 0 1740 1782 712617327 712617369 1.940000e-06 63.9
27 TraesCS5A01G495400 chr6B 100.000 30 0 0 1753 1782 500614629 500614600 3.240000e-04 56.5
28 TraesCS5A01G495400 chr1D 100.000 31 0 0 1752 1782 279105998 279106028 9.020000e-05 58.4
29 TraesCS5A01G495400 chr2A 100.000 30 0 0 1753 1782 685753741 685753770 3.240000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G495400 chr5A 663374905 663377240 2335 True 4314.00 4314 100.00000 1 2336 1 chr5A.!!$R1 2335
1 TraesCS5A01G495400 chr4B 613904904 613906780 1876 False 475.25 1129 91.67025 1 2334 4 chr4B.!!$F3 2333
2 TraesCS5A01G495400 chr4D 483179067 483180509 1442 True 787.00 1051 89.96100 108 1782 2 chr4D.!!$R1 1674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 495 0.034896 CACGGGCCAAGTTAGTGAGT 59.965 55.0 4.39 0.0 35.03 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2140 0.107831 GTGGCAAGGTCACAGTGGTA 59.892 55.0 0.0 0.0 38.14 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.575256 TGAAGCTACCAAACGGACTCTTA 59.425 43.478 0.00 0.00 0.00 2.10
44 45 3.181471 ACGGACTCTTAATGCTGATCCAG 60.181 47.826 0.00 0.00 34.12 3.86
87 88 2.750350 CGTCCAGACCCAAAGGCT 59.250 61.111 0.00 0.00 36.11 4.58
88 89 1.672356 CGTCCAGACCCAAAGGCTG 60.672 63.158 0.00 0.00 37.17 4.85
99 100 1.588674 CAAAGGCTGTGGTGTCGTTA 58.411 50.000 0.00 0.00 0.00 3.18
103 104 1.300388 GCTGTGGTGTCGTTACCGT 60.300 57.895 6.41 0.00 43.87 4.83
104 105 1.280206 GCTGTGGTGTCGTTACCGTC 61.280 60.000 6.41 3.72 43.87 4.79
141 148 3.204606 AGTGGCAGAGGTACCTATGACTA 59.795 47.826 35.96 22.76 43.23 2.59
186 193 0.946221 ACCGAGCACGCAGAAAGAAG 60.946 55.000 0.00 0.00 38.29 2.85
213 234 2.360801 TCTAGCACCAAAACCAAACTGC 59.639 45.455 0.00 0.00 0.00 4.40
353 381 2.519302 CACCCGCCCATTCCATCC 60.519 66.667 0.00 0.00 0.00 3.51
459 487 2.113139 CACCTTCACGGGCCAAGT 59.887 61.111 4.39 0.00 36.97 3.16
463 491 0.036306 CCTTCACGGGCCAAGTTAGT 59.964 55.000 4.39 0.00 0.00 2.24
466 494 0.320374 TCACGGGCCAAGTTAGTGAG 59.680 55.000 4.39 0.00 36.98 3.51
467 495 0.034896 CACGGGCCAAGTTAGTGAGT 59.965 55.000 4.39 0.00 35.03 3.41
469 497 0.320374 CGGGCCAAGTTAGTGAGTGA 59.680 55.000 4.39 0.00 0.00 3.41
470 498 1.066143 CGGGCCAAGTTAGTGAGTGAT 60.066 52.381 4.39 0.00 0.00 3.06
471 499 2.615493 CGGGCCAAGTTAGTGAGTGATT 60.615 50.000 4.39 0.00 0.00 2.57
472 500 3.010420 GGGCCAAGTTAGTGAGTGATTC 58.990 50.000 4.39 0.00 0.00 2.52
473 501 3.307762 GGGCCAAGTTAGTGAGTGATTCT 60.308 47.826 4.39 0.00 0.00 2.40
475 503 3.935828 GCCAAGTTAGTGAGTGATTCTCC 59.064 47.826 0.00 0.00 42.12 3.71
476 504 4.563580 GCCAAGTTAGTGAGTGATTCTCCA 60.564 45.833 0.00 0.00 42.12 3.86
478 506 4.442375 AGTTAGTGAGTGATTCTCCACG 57.558 45.455 0.00 0.00 42.12 4.94
481 509 2.796557 AGTGAGTGATTCTCCACGAGA 58.203 47.619 0.00 0.00 42.12 4.04
482 510 3.360867 AGTGAGTGATTCTCCACGAGAT 58.639 45.455 0.00 0.00 42.12 2.75
483 511 4.527944 AGTGAGTGATTCTCCACGAGATA 58.472 43.478 0.00 0.00 42.12 1.98
484 512 4.578516 AGTGAGTGATTCTCCACGAGATAG 59.421 45.833 0.00 0.00 42.12 2.08
485 513 4.576873 GTGAGTGATTCTCCACGAGATAGA 59.423 45.833 0.00 0.00 42.12 1.98
486 514 5.240623 GTGAGTGATTCTCCACGAGATAGAT 59.759 44.000 0.00 0.00 42.12 1.98
487 515 6.428465 GTGAGTGATTCTCCACGAGATAGATA 59.572 42.308 0.00 0.00 42.12 1.98
488 516 6.998673 TGAGTGATTCTCCACGAGATAGATAA 59.001 38.462 0.00 0.00 42.12 1.75
489 517 7.502561 TGAGTGATTCTCCACGAGATAGATAAA 59.497 37.037 0.00 0.00 42.12 1.40
490 518 8.239038 AGTGATTCTCCACGAGATAGATAAAA 57.761 34.615 0.00 0.00 38.56 1.52
491 519 8.696374 AGTGATTCTCCACGAGATAGATAAAAA 58.304 33.333 0.00 0.00 38.56 1.94
492 520 8.756864 GTGATTCTCCACGAGATAGATAAAAAC 58.243 37.037 0.00 0.00 38.56 2.43
493 521 8.474831 TGATTCTCCACGAGATAGATAAAAACA 58.525 33.333 0.00 0.00 38.56 2.83
494 522 9.482627 GATTCTCCACGAGATAGATAAAAACAT 57.517 33.333 0.00 0.00 38.56 2.71
495 523 8.873215 TTCTCCACGAGATAGATAAAAACATC 57.127 34.615 0.00 0.00 38.56 3.06
496 524 7.434492 TCTCCACGAGATAGATAAAAACATCC 58.566 38.462 0.00 0.00 33.35 3.51
497 525 7.069455 TCTCCACGAGATAGATAAAAACATCCA 59.931 37.037 0.00 0.00 33.35 3.41
498 526 7.210174 TCCACGAGATAGATAAAAACATCCAG 58.790 38.462 0.00 0.00 0.00 3.86
499 527 7.069455 TCCACGAGATAGATAAAAACATCCAGA 59.931 37.037 0.00 0.00 0.00 3.86
500 528 7.169982 CCACGAGATAGATAAAAACATCCAGAC 59.830 40.741 0.00 0.00 0.00 3.51
511 539 1.238439 CATCCAGACGTTTTGCACCT 58.762 50.000 0.00 0.00 0.00 4.00
514 542 0.517316 CCAGACGTTTTGCACCTAGC 59.483 55.000 0.00 0.00 45.96 3.42
537 575 3.181967 CGCCTCGCACAGCACTAC 61.182 66.667 0.00 0.00 0.00 2.73
538 576 2.815647 GCCTCGCACAGCACTACC 60.816 66.667 0.00 0.00 0.00 3.18
539 577 2.507102 CCTCGCACAGCACTACCG 60.507 66.667 0.00 0.00 0.00 4.02
540 578 3.181967 CTCGCACAGCACTACCGC 61.182 66.667 0.00 0.00 0.00 5.68
541 579 3.633094 CTCGCACAGCACTACCGCT 62.633 63.158 0.00 0.00 45.21 5.52
547 585 4.941609 AGCACTACCGCTGGATTG 57.058 55.556 1.50 0.00 41.85 2.67
548 586 1.221840 AGCACTACCGCTGGATTGG 59.778 57.895 1.50 0.00 41.85 3.16
549 587 1.819632 GCACTACCGCTGGATTGGG 60.820 63.158 1.50 0.00 0.00 4.12
550 588 1.602237 CACTACCGCTGGATTGGGT 59.398 57.895 1.50 0.00 37.84 4.51
551 589 0.744414 CACTACCGCTGGATTGGGTG 60.744 60.000 1.50 0.00 35.28 4.61
552 590 1.819632 CTACCGCTGGATTGGGTGC 60.820 63.158 1.50 0.00 35.28 5.01
553 591 3.673956 TACCGCTGGATTGGGTGCG 62.674 63.158 0.00 0.00 46.74 5.34
556 594 4.120331 GCTGGATTGGGTGCGCAC 62.120 66.667 32.15 32.15 0.00 5.34
557 595 3.803082 CTGGATTGGGTGCGCACG 61.803 66.667 32.35 13.60 0.00 5.34
588 626 3.607987 CGCGCTCACCGATCGAAC 61.608 66.667 18.66 0.00 40.02 3.95
589 627 3.607987 GCGCTCACCGATCGAACG 61.608 66.667 18.66 8.26 40.02 3.95
590 628 3.607987 CGCTCACCGATCGAACGC 61.608 66.667 18.66 12.10 40.02 4.84
591 629 3.607987 GCTCACCGATCGAACGCG 61.608 66.667 18.66 3.53 39.35 6.01
592 630 2.202440 CTCACCGATCGAACGCGT 60.202 61.111 18.66 5.58 38.98 6.01
593 631 2.202388 TCACCGATCGAACGCGTC 60.202 61.111 18.66 5.31 38.98 5.19
594 632 2.503158 CACCGATCGAACGCGTCA 60.503 61.111 18.66 0.00 38.98 4.35
595 633 1.872234 CACCGATCGAACGCGTCAT 60.872 57.895 18.66 4.90 38.98 3.06
596 634 1.585521 ACCGATCGAACGCGTCATC 60.586 57.895 18.66 13.64 38.98 2.92
597 635 1.585261 CCGATCGAACGCGTCATCA 60.585 57.895 18.66 0.00 38.98 3.07
598 636 0.934901 CCGATCGAACGCGTCATCAT 60.935 55.000 18.66 1.90 38.98 2.45
599 637 0.846401 CGATCGAACGCGTCATCATT 59.154 50.000 14.44 0.00 38.98 2.57
600 638 2.041244 CGATCGAACGCGTCATCATTA 58.959 47.619 14.44 0.00 38.98 1.90
601 639 2.656897 CGATCGAACGCGTCATCATTAT 59.343 45.455 14.44 1.03 38.98 1.28
602 640 3.478756 CGATCGAACGCGTCATCATTATG 60.479 47.826 14.44 0.00 38.98 1.90
603 641 2.124122 TCGAACGCGTCATCATTATGG 58.876 47.619 14.44 0.00 38.98 2.74
604 642 1.858458 CGAACGCGTCATCATTATGGT 59.142 47.619 14.44 0.00 33.61 3.55
605 643 2.284150 CGAACGCGTCATCATTATGGTT 59.716 45.455 14.44 0.00 33.61 3.67
606 644 3.487942 CGAACGCGTCATCATTATGGTTA 59.512 43.478 14.44 0.00 33.61 2.85
607 645 4.149922 CGAACGCGTCATCATTATGGTTAT 59.850 41.667 14.44 0.00 33.61 1.89
608 646 5.591643 AACGCGTCATCATTATGGTTATC 57.408 39.130 14.44 0.00 33.61 1.75
609 647 4.883083 ACGCGTCATCATTATGGTTATCT 58.117 39.130 5.58 0.00 33.61 1.98
610 648 5.297547 ACGCGTCATCATTATGGTTATCTT 58.702 37.500 5.58 0.00 33.61 2.40
611 649 5.758296 ACGCGTCATCATTATGGTTATCTTT 59.242 36.000 5.58 0.00 33.61 2.52
612 650 6.073369 CGCGTCATCATTATGGTTATCTTTG 58.927 40.000 0.00 0.00 33.61 2.77
613 651 6.373779 GCGTCATCATTATGGTTATCTTTGG 58.626 40.000 0.00 0.00 33.61 3.28
614 652 6.017109 GCGTCATCATTATGGTTATCTTTGGT 60.017 38.462 0.00 0.00 33.61 3.67
615 653 7.468631 GCGTCATCATTATGGTTATCTTTGGTT 60.469 37.037 0.00 0.00 33.61 3.67
616 654 8.405531 CGTCATCATTATGGTTATCTTTGGTTT 58.594 33.333 0.00 0.00 33.61 3.27
619 657 8.819974 CATCATTATGGTTATCTTTGGTTTTGC 58.180 33.333 0.00 0.00 0.00 3.68
620 658 7.327214 TCATTATGGTTATCTTTGGTTTTGCC 58.673 34.615 0.00 0.00 37.90 4.52
635 673 3.744559 GCCAAGGCAACAAGACGA 58.255 55.556 6.14 0.00 41.49 4.20
636 674 2.257353 GCCAAGGCAACAAGACGAT 58.743 52.632 6.14 0.00 41.49 3.73
637 675 0.109597 GCCAAGGCAACAAGACGATG 60.110 55.000 6.14 0.00 41.49 3.84
638 676 0.109597 CCAAGGCAACAAGACGATGC 60.110 55.000 0.00 0.00 42.43 3.91
639 677 0.592637 CAAGGCAACAAGACGATGCA 59.407 50.000 0.00 0.00 44.84 3.96
650 688 4.759693 ACAAGACGATGCAACTTAATTCCA 59.240 37.500 0.00 0.00 0.00 3.53
652 690 5.741388 AGACGATGCAACTTAATTCCATC 57.259 39.130 0.00 0.00 0.00 3.51
658 696 3.505680 TGCAACTTAATTCCATCGTGCTT 59.494 39.130 0.00 0.00 0.00 3.91
660 698 5.028375 GCAACTTAATTCCATCGTGCTTAC 58.972 41.667 0.00 0.00 0.00 2.34
675 717 3.690628 GTGCTTACGGCCAAATTAGGTTA 59.309 43.478 2.24 0.00 40.92 2.85
677 719 3.242969 GCTTACGGCCAAATTAGGTTAGC 60.243 47.826 2.24 1.45 34.27 3.09
678 720 1.758936 ACGGCCAAATTAGGTTAGCC 58.241 50.000 2.24 0.00 36.49 3.93
679 721 1.004979 ACGGCCAAATTAGGTTAGCCA 59.995 47.619 2.24 0.00 38.61 4.75
681 723 2.293399 CGGCCAAATTAGGTTAGCCATC 59.707 50.000 2.24 0.00 38.61 3.51
682 724 2.293399 GGCCAAATTAGGTTAGCCATCG 59.707 50.000 0.00 0.00 38.58 3.84
683 725 2.949644 GCCAAATTAGGTTAGCCATCGT 59.050 45.455 0.00 0.00 37.19 3.73
684 726 3.003378 GCCAAATTAGGTTAGCCATCGTC 59.997 47.826 0.00 0.00 37.19 4.20
685 727 4.196193 CCAAATTAGGTTAGCCATCGTCA 58.804 43.478 0.00 0.00 37.19 4.35
686 728 4.821805 CCAAATTAGGTTAGCCATCGTCAT 59.178 41.667 0.00 0.00 37.19 3.06
687 729 5.277974 CCAAATTAGGTTAGCCATCGTCATG 60.278 44.000 0.00 0.00 37.19 3.07
688 730 4.689612 ATTAGGTTAGCCATCGTCATGT 57.310 40.909 0.00 0.00 37.19 3.21
689 731 4.481368 TTAGGTTAGCCATCGTCATGTT 57.519 40.909 0.00 0.00 37.19 2.71
690 732 3.350219 AGGTTAGCCATCGTCATGTTT 57.650 42.857 0.00 0.00 37.19 2.83
691 733 4.481368 AGGTTAGCCATCGTCATGTTTA 57.519 40.909 0.00 0.00 37.19 2.01
692 734 4.442706 AGGTTAGCCATCGTCATGTTTAG 58.557 43.478 0.00 0.00 37.19 1.85
693 735 4.081087 AGGTTAGCCATCGTCATGTTTAGT 60.081 41.667 0.00 0.00 37.19 2.24
694 736 5.128171 AGGTTAGCCATCGTCATGTTTAGTA 59.872 40.000 0.00 0.00 37.19 1.82
695 737 5.989777 GGTTAGCCATCGTCATGTTTAGTAT 59.010 40.000 0.00 0.00 34.09 2.12
696 738 6.145696 GGTTAGCCATCGTCATGTTTAGTATC 59.854 42.308 0.00 0.00 34.09 2.24
697 739 5.537300 AGCCATCGTCATGTTTAGTATCT 57.463 39.130 0.00 0.00 0.00 1.98
698 740 5.533482 AGCCATCGTCATGTTTAGTATCTC 58.467 41.667 0.00 0.00 0.00 2.75
699 741 5.303078 AGCCATCGTCATGTTTAGTATCTCT 59.697 40.000 0.00 0.00 0.00 3.10
700 742 5.986135 GCCATCGTCATGTTTAGTATCTCTT 59.014 40.000 0.00 0.00 0.00 2.85
701 743 6.144724 GCCATCGTCATGTTTAGTATCTCTTC 59.855 42.308 0.00 0.00 0.00 2.87
702 744 6.360947 CCATCGTCATGTTTAGTATCTCTTCG 59.639 42.308 0.00 0.00 0.00 3.79
703 745 6.432607 TCGTCATGTTTAGTATCTCTTCGT 57.567 37.500 0.00 0.00 0.00 3.85
704 746 6.484540 TCGTCATGTTTAGTATCTCTTCGTC 58.515 40.000 0.00 0.00 0.00 4.20
705 747 5.681982 CGTCATGTTTAGTATCTCTTCGTCC 59.318 44.000 0.00 0.00 0.00 4.79
706 748 5.681982 GTCATGTTTAGTATCTCTTCGTCCG 59.318 44.000 0.00 0.00 0.00 4.79
707 749 4.627611 TGTTTAGTATCTCTTCGTCCGG 57.372 45.455 0.00 0.00 0.00 5.14
708 750 4.264253 TGTTTAGTATCTCTTCGTCCGGA 58.736 43.478 0.00 0.00 0.00 5.14
709 751 4.701651 TGTTTAGTATCTCTTCGTCCGGAA 59.298 41.667 5.23 0.00 0.00 4.30
710 752 5.359009 TGTTTAGTATCTCTTCGTCCGGAAT 59.641 40.000 5.23 0.00 33.26 3.01
711 753 6.127535 TGTTTAGTATCTCTTCGTCCGGAATT 60.128 38.462 5.23 0.00 33.26 2.17
712 754 4.308899 AGTATCTCTTCGTCCGGAATTG 57.691 45.455 5.23 0.00 33.26 2.32
713 755 1.941325 ATCTCTTCGTCCGGAATTGC 58.059 50.000 5.23 0.00 33.26 3.56
714 756 0.895530 TCTCTTCGTCCGGAATTGCT 59.104 50.000 5.23 0.00 33.26 3.91
715 757 1.275291 TCTCTTCGTCCGGAATTGCTT 59.725 47.619 5.23 0.00 33.26 3.91
716 758 1.394917 CTCTTCGTCCGGAATTGCTTG 59.605 52.381 5.23 0.00 33.26 4.01
717 759 0.179189 CTTCGTCCGGAATTGCTTGC 60.179 55.000 5.23 0.00 33.26 4.01
718 760 0.886938 TTCGTCCGGAATTGCTTGCA 60.887 50.000 5.23 0.00 0.00 4.08
719 761 0.676466 TCGTCCGGAATTGCTTGCAT 60.676 50.000 5.23 0.00 0.00 3.96
720 762 0.523968 CGTCCGGAATTGCTTGCATG 60.524 55.000 5.23 0.00 0.00 4.06
721 763 0.810648 GTCCGGAATTGCTTGCATGA 59.189 50.000 5.23 0.00 0.00 3.07
722 764 1.202114 GTCCGGAATTGCTTGCATGAA 59.798 47.619 5.23 0.00 0.00 2.57
723 765 2.101783 TCCGGAATTGCTTGCATGAAT 58.898 42.857 0.00 0.00 0.00 2.57
724 766 2.159212 TCCGGAATTGCTTGCATGAATG 60.159 45.455 0.00 0.00 0.00 2.67
725 767 2.159212 CCGGAATTGCTTGCATGAATGA 60.159 45.455 0.00 0.00 0.00 2.57
726 768 3.113322 CGGAATTGCTTGCATGAATGAG 58.887 45.455 3.33 0.00 0.00 2.90
727 769 3.428452 CGGAATTGCTTGCATGAATGAGT 60.428 43.478 3.33 0.00 0.00 3.41
728 770 3.863424 GGAATTGCTTGCATGAATGAGTG 59.137 43.478 3.33 0.00 0.00 3.51
729 771 2.357327 TTGCTTGCATGAATGAGTGC 57.643 45.000 3.33 0.00 41.61 4.40
736 778 3.473625 TGCATGAATGAGTGCATCTAGG 58.526 45.455 0.00 0.00 45.60 3.02
737 779 2.225963 GCATGAATGAGTGCATCTAGGC 59.774 50.000 0.00 0.00 40.94 3.93
738 780 3.473625 CATGAATGAGTGCATCTAGGCA 58.526 45.455 0.00 0.00 42.53 4.75
739 781 3.851458 TGAATGAGTGCATCTAGGCAT 57.149 42.857 0.00 0.00 46.92 4.40
740 782 4.961438 TGAATGAGTGCATCTAGGCATA 57.039 40.909 0.00 0.00 46.92 3.14
741 783 5.494390 TGAATGAGTGCATCTAGGCATAT 57.506 39.130 0.00 0.00 46.92 1.78
742 784 5.872963 TGAATGAGTGCATCTAGGCATATT 58.127 37.500 0.00 0.00 46.92 1.28
743 785 6.301486 TGAATGAGTGCATCTAGGCATATTT 58.699 36.000 0.00 0.00 46.92 1.40
744 786 6.774170 TGAATGAGTGCATCTAGGCATATTTT 59.226 34.615 0.00 0.00 46.92 1.82
745 787 6.814506 ATGAGTGCATCTAGGCATATTTTC 57.185 37.500 0.00 0.00 46.92 2.29
746 788 5.683681 TGAGTGCATCTAGGCATATTTTCA 58.316 37.500 0.00 0.00 46.92 2.69
747 789 5.761726 TGAGTGCATCTAGGCATATTTTCAG 59.238 40.000 0.00 0.00 46.92 3.02
748 790 5.688807 AGTGCATCTAGGCATATTTTCAGT 58.311 37.500 0.00 0.00 46.92 3.41
749 791 6.125029 AGTGCATCTAGGCATATTTTCAGTT 58.875 36.000 0.00 0.00 46.92 3.16
750 792 6.261826 AGTGCATCTAGGCATATTTTCAGTTC 59.738 38.462 0.00 0.00 46.92 3.01
751 793 6.261826 GTGCATCTAGGCATATTTTCAGTTCT 59.738 38.462 0.00 0.00 46.92 3.01
752 794 6.261603 TGCATCTAGGCATATTTTCAGTTCTG 59.738 38.462 0.00 0.00 39.25 3.02
753 795 6.484643 GCATCTAGGCATATTTTCAGTTCTGA 59.515 38.462 0.00 0.00 0.00 3.27
754 796 7.012704 GCATCTAGGCATATTTTCAGTTCTGAA 59.987 37.037 10.67 10.67 0.00 3.02
755 797 9.064706 CATCTAGGCATATTTTCAGTTCTGAAT 57.935 33.333 14.67 5.28 0.00 2.57
757 799 9.547753 TCTAGGCATATTTTCAGTTCTGAATAC 57.452 33.333 14.67 1.07 0.00 1.89
758 800 9.330063 CTAGGCATATTTTCAGTTCTGAATACA 57.670 33.333 14.67 1.92 0.00 2.29
759 801 7.989826 AGGCATATTTTCAGTTCTGAATACAC 58.010 34.615 14.67 4.82 0.00 2.90
760 802 7.067494 AGGCATATTTTCAGTTCTGAATACACC 59.933 37.037 14.67 11.67 0.00 4.16
761 803 7.196331 GCATATTTTCAGTTCTGAATACACCC 58.804 38.462 14.67 2.01 0.00 4.61
762 804 7.148086 GCATATTTTCAGTTCTGAATACACCCA 60.148 37.037 14.67 0.00 0.00 4.51
763 805 8.906867 CATATTTTCAGTTCTGAATACACCCAT 58.093 33.333 14.67 0.00 0.00 4.00
764 806 7.781324 ATTTTCAGTTCTGAATACACCCATT 57.219 32.000 14.67 0.00 0.00 3.16
765 807 7.595819 TTTTCAGTTCTGAATACACCCATTT 57.404 32.000 14.67 0.00 0.00 2.32
766 808 6.817765 TTCAGTTCTGAATACACCCATTTC 57.182 37.500 10.67 0.00 0.00 2.17
767 809 6.126863 TCAGTTCTGAATACACCCATTTCT 57.873 37.500 0.00 0.00 0.00 2.52
768 810 7.252612 TCAGTTCTGAATACACCCATTTCTA 57.747 36.000 0.00 0.00 0.00 2.10
769 811 7.103641 TCAGTTCTGAATACACCCATTTCTAC 58.896 38.462 0.00 0.00 0.00 2.59
770 812 6.036083 CAGTTCTGAATACACCCATTTCTACG 59.964 42.308 0.00 0.00 0.00 3.51
771 813 5.925506 TCTGAATACACCCATTTCTACGA 57.074 39.130 0.00 0.00 0.00 3.43
772 814 5.657474 TCTGAATACACCCATTTCTACGAC 58.343 41.667 0.00 0.00 0.00 4.34
773 815 5.186215 TCTGAATACACCCATTTCTACGACA 59.814 40.000 0.00 0.00 0.00 4.35
774 816 5.795972 TGAATACACCCATTTCTACGACAA 58.204 37.500 0.00 0.00 0.00 3.18
775 817 5.872617 TGAATACACCCATTTCTACGACAAG 59.127 40.000 0.00 0.00 0.00 3.16
776 818 3.764237 ACACCCATTTCTACGACAAGT 57.236 42.857 0.00 0.00 0.00 3.16
777 819 4.081322 ACACCCATTTCTACGACAAGTT 57.919 40.909 0.00 0.00 0.00 2.66
778 820 5.217978 ACACCCATTTCTACGACAAGTTA 57.782 39.130 0.00 0.00 0.00 2.24
779 821 5.801380 ACACCCATTTCTACGACAAGTTAT 58.199 37.500 0.00 0.00 0.00 1.89
780 822 6.235664 ACACCCATTTCTACGACAAGTTATT 58.764 36.000 0.00 0.00 0.00 1.40
781 823 6.370718 ACACCCATTTCTACGACAAGTTATTC 59.629 38.462 0.00 0.00 0.00 1.75
782 824 5.579511 ACCCATTTCTACGACAAGTTATTCG 59.420 40.000 4.86 4.86 41.14 3.34
783 825 5.006358 CCCATTTCTACGACAAGTTATTCGG 59.994 44.000 10.02 0.00 39.63 4.30
784 826 5.808540 CCATTTCTACGACAAGTTATTCGGA 59.191 40.000 10.02 1.79 39.63 4.55
785 827 6.311935 CCATTTCTACGACAAGTTATTCGGAA 59.688 38.462 10.02 0.00 39.63 4.30
786 828 6.695292 TTTCTACGACAAGTTATTCGGAAC 57.305 37.500 10.02 0.00 39.63 3.62
787 829 5.375417 TCTACGACAAGTTATTCGGAACA 57.625 39.130 10.02 0.00 39.63 3.18
788 830 5.396484 TCTACGACAAGTTATTCGGAACAG 58.604 41.667 10.02 3.40 39.63 3.16
789 831 4.247267 ACGACAAGTTATTCGGAACAGA 57.753 40.909 10.02 0.00 39.63 3.41
790 832 4.235360 ACGACAAGTTATTCGGAACAGAG 58.765 43.478 10.02 0.00 39.63 3.35
791 833 3.612860 CGACAAGTTATTCGGAACAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
792 834 3.933332 GACAAGTTATTCGGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
793 835 3.581332 ACAAGTTATTCGGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
794 836 4.184629 CAAGTTATTCGGAACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
795 837 3.442076 AGTTATTCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
796 838 4.607239 AGTTATTCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
797 839 4.401837 AGTTATTCGGAACAGAGGGAGTAC 59.598 45.833 0.00 0.00 0.00 2.73
798 840 2.599408 TTCGGAACAGAGGGAGTACT 57.401 50.000 0.00 0.00 0.00 2.73
799 841 2.599408 TCGGAACAGAGGGAGTACTT 57.401 50.000 0.00 0.00 0.00 2.24
800 842 2.885616 TCGGAACAGAGGGAGTACTTT 58.114 47.619 0.00 0.00 0.00 2.66
801 843 4.038271 TCGGAACAGAGGGAGTACTTTA 57.962 45.455 0.00 0.00 0.00 1.85
802 844 3.760684 TCGGAACAGAGGGAGTACTTTAC 59.239 47.826 0.00 0.00 0.00 2.01
803 845 3.762823 CGGAACAGAGGGAGTACTTTACT 59.237 47.826 0.00 0.00 42.86 2.24
804 846 4.220163 CGGAACAGAGGGAGTACTTTACTT 59.780 45.833 0.00 0.00 39.59 2.24
805 847 5.416952 CGGAACAGAGGGAGTACTTTACTTA 59.583 44.000 0.00 0.00 39.59 2.24
806 848 6.404513 CGGAACAGAGGGAGTACTTTACTTAG 60.405 46.154 0.00 0.00 39.59 2.18
807 849 6.436847 GGAACAGAGGGAGTACTTTACTTAGT 59.563 42.308 0.00 0.00 39.59 2.24
808 850 7.039152 GGAACAGAGGGAGTACTTTACTTAGTT 60.039 40.741 0.00 5.27 39.59 2.24
809 851 7.852550 ACAGAGGGAGTACTTTACTTAGTTT 57.147 36.000 0.00 0.00 39.59 2.66
810 852 8.260099 ACAGAGGGAGTACTTTACTTAGTTTT 57.740 34.615 0.00 0.00 39.59 2.43
811 853 8.148999 ACAGAGGGAGTACTTTACTTAGTTTTG 58.851 37.037 0.00 0.00 39.59 2.44
812 854 8.148999 CAGAGGGAGTACTTTACTTAGTTTTGT 58.851 37.037 0.00 0.00 39.59 2.83
813 855 9.372189 AGAGGGAGTACTTTACTTAGTTTTGTA 57.628 33.333 0.00 0.00 39.59 2.41
814 856 9.987272 GAGGGAGTACTTTACTTAGTTTTGTAA 57.013 33.333 0.00 0.00 39.59 2.41
839 881 7.129109 ACCAAAAGATGTTATATATTCGCCG 57.871 36.000 0.00 0.00 0.00 6.46
845 887 4.445452 TGTTATATATTCGCCGAGGACC 57.555 45.455 0.00 0.00 0.00 4.46
848 890 1.246056 TATATTCGCCGAGGACCCCG 61.246 60.000 0.00 0.00 0.00 5.73
853 895 4.754667 GCCGAGGACCCCGTTGTC 62.755 72.222 0.00 0.00 34.42 3.18
860 902 1.650363 GACCCCGTTGTCAAAACCG 59.350 57.895 0.00 0.00 35.29 4.44
865 907 0.917939 CCGTTGTCAAAACCGCAAAC 59.082 50.000 0.00 0.00 0.00 2.93
878 920 4.728058 CAAACTTGCAACACCCGG 57.272 55.556 0.00 0.00 0.00 5.73
880 922 2.055042 AAACTTGCAACACCCGGCA 61.055 52.632 0.00 0.00 38.46 5.69
882 924 4.347453 CTTGCAACACCCGGCAGC 62.347 66.667 0.00 0.00 41.68 5.25
900 942 1.257750 GCCAAAACCTCCCATCACCC 61.258 60.000 0.00 0.00 0.00 4.61
922 972 1.430707 CGGTATAAAACACCCCGCCG 61.431 60.000 0.00 0.00 31.96 6.46
984 1055 2.107141 CCGATCGAGCAACCTCCC 59.893 66.667 18.66 0.00 34.49 4.30
986 1057 1.218047 CGATCGAGCAACCTCCCAA 59.782 57.895 10.26 0.00 34.49 4.12
988 1059 1.587547 GATCGAGCAACCTCCCAATC 58.412 55.000 0.00 0.00 34.49 2.67
996 1069 2.648059 CAACCTCCCAATCAGCTAAGG 58.352 52.381 0.00 0.00 0.00 2.69
1027 1101 2.730672 CGCTCGGTGTGCTACTTGC 61.731 63.158 0.00 0.00 43.25 4.01
1082 1159 4.176851 GGTCCTCCTCGTCGTCGC 62.177 72.222 0.00 0.00 36.96 5.19
1086 1163 3.878519 CTCCTCGTCGTCGCCCTC 61.879 72.222 0.00 0.00 36.96 4.30
1248 1334 2.159310 CCTCTGCTCCTACAAGAACTCG 60.159 54.545 0.00 0.00 0.00 4.18
1341 1427 1.068250 GCCCGACTGCTAGATCCAC 59.932 63.158 0.00 0.00 0.00 4.02
1367 1465 1.484240 CTCCCAACATCTGTCCTCCTC 59.516 57.143 0.00 0.00 0.00 3.71
1372 1470 1.178276 ACATCTGTCCTCCTCGTGTC 58.822 55.000 0.00 0.00 0.00 3.67
1373 1471 0.457851 CATCTGTCCTCCTCGTGTCC 59.542 60.000 0.00 0.00 0.00 4.02
1374 1472 0.684805 ATCTGTCCTCCTCGTGTCCC 60.685 60.000 0.00 0.00 0.00 4.46
1375 1473 2.675423 TGTCCTCCTCGTGTCCCG 60.675 66.667 0.00 0.00 38.13 5.14
1376 1474 3.450115 GTCCTCCTCGTGTCCCGG 61.450 72.222 0.00 0.00 37.11 5.73
1406 1504 0.248743 GGTTGATGATGCATGCGGTG 60.249 55.000 14.09 0.00 0.00 4.94
1512 1610 0.248054 CGGTGTGTGAAAGTGTGTGC 60.248 55.000 0.00 0.00 0.00 4.57
1514 1612 1.202177 GGTGTGTGAAAGTGTGTGCTG 60.202 52.381 0.00 0.00 0.00 4.41
1517 1615 0.679321 TGTGAAAGTGTGTGCTGCCA 60.679 50.000 0.00 0.00 0.00 4.92
1518 1616 0.248621 GTGAAAGTGTGTGCTGCCAC 60.249 55.000 12.44 12.44 42.40 5.01
1519 1617 1.009675 GAAAGTGTGTGCTGCCACG 60.010 57.895 13.83 0.00 45.04 4.94
1548 1646 0.106708 TCTTGGCAGTGACTGTGTCC 59.893 55.000 14.82 7.59 33.43 4.02
1588 1691 6.852853 CACTACTTCAAATGTGTGCACTTTAG 59.147 38.462 19.41 8.11 0.00 1.85
1637 1741 7.854557 ACAATCTACTTCGGGGTTAATTAAC 57.145 36.000 18.30 18.30 35.50 2.01
1684 1788 1.082496 GCTCACAACAGTGCTTCGC 60.082 57.895 0.00 0.00 33.28 4.70
1709 1813 2.804647 TCGTGTCATGTTAGCGGTATG 58.195 47.619 0.00 0.00 0.00 2.39
1738 1853 2.171448 CCACCCCGAGAAAGATCAGATT 59.829 50.000 0.00 0.00 0.00 2.40
1739 1854 3.388024 CCACCCCGAGAAAGATCAGATTA 59.612 47.826 0.00 0.00 0.00 1.75
1743 1858 6.543831 CACCCCGAGAAAGATCAGATTAAAAT 59.456 38.462 0.00 0.00 0.00 1.82
1805 1931 1.525923 CAGCATCTGTCCTCCTGGG 59.474 63.158 0.00 0.00 0.00 4.45
1817 1943 1.002888 CCTCCTGGGATCGATTGATGG 59.997 57.143 0.00 0.71 34.09 3.51
1818 1944 1.002888 CTCCTGGGATCGATTGATGGG 59.997 57.143 0.00 0.00 34.09 4.00
1828 1954 5.590259 GGATCGATTGATGGGGTATAAATGG 59.410 44.000 0.00 0.00 34.09 3.16
1832 1958 4.534647 TTGATGGGGTATAAATGGCTGT 57.465 40.909 0.00 0.00 0.00 4.40
1861 1987 4.323945 GGAGGTACAATGTACATCCACCAA 60.324 45.833 37.25 0.00 44.95 3.67
1868 1994 1.834896 TGTACATCCACCAAGCCGTAT 59.165 47.619 0.00 0.00 0.00 3.06
1875 2001 1.472728 CCACCAAGCCGTATACCTGTC 60.473 57.143 0.00 0.00 0.00 3.51
1890 2016 1.202533 CCTGTCGGTGTGTGAAAGAGT 60.203 52.381 0.00 0.00 0.00 3.24
1891 2017 1.860950 CTGTCGGTGTGTGAAAGAGTG 59.139 52.381 0.00 0.00 0.00 3.51
1892 2018 1.206132 TGTCGGTGTGTGAAAGAGTGT 59.794 47.619 0.00 0.00 0.00 3.55
1893 2019 1.593006 GTCGGTGTGTGAAAGAGTGTG 59.407 52.381 0.00 0.00 0.00 3.82
1894 2020 1.206132 TCGGTGTGTGAAAGAGTGTGT 59.794 47.619 0.00 0.00 0.00 3.72
1895 2021 2.006888 CGGTGTGTGAAAGAGTGTGTT 58.993 47.619 0.00 0.00 0.00 3.32
1896 2022 3.119065 TCGGTGTGTGAAAGAGTGTGTTA 60.119 43.478 0.00 0.00 0.00 2.41
1897 2023 3.619483 CGGTGTGTGAAAGAGTGTGTTAA 59.381 43.478 0.00 0.00 0.00 2.01
1898 2024 4.093703 CGGTGTGTGAAAGAGTGTGTTAAA 59.906 41.667 0.00 0.00 0.00 1.52
1899 2025 5.391097 CGGTGTGTGAAAGAGTGTGTTAAAA 60.391 40.000 0.00 0.00 0.00 1.52
1900 2026 6.383415 GGTGTGTGAAAGAGTGTGTTAAAAA 58.617 36.000 0.00 0.00 0.00 1.94
1923 2049 6.798427 AAATGAGATCCTTAGACACTAGCA 57.202 37.500 0.00 0.00 0.00 3.49
1924 2050 6.992664 AATGAGATCCTTAGACACTAGCAT 57.007 37.500 0.00 0.00 0.00 3.79
1925 2051 6.588719 ATGAGATCCTTAGACACTAGCATC 57.411 41.667 0.00 0.00 0.00 3.91
1926 2052 4.830046 TGAGATCCTTAGACACTAGCATCC 59.170 45.833 0.00 0.00 0.00 3.51
1927 2053 4.809193 AGATCCTTAGACACTAGCATCCA 58.191 43.478 0.00 0.00 0.00 3.41
1928 2054 4.832266 AGATCCTTAGACACTAGCATCCAG 59.168 45.833 0.00 0.00 0.00 3.86
1929 2055 3.300388 TCCTTAGACACTAGCATCCAGG 58.700 50.000 0.00 0.00 0.00 4.45
1930 2056 3.052869 TCCTTAGACACTAGCATCCAGGA 60.053 47.826 0.00 0.00 0.00 3.86
1931 2057 3.068873 CCTTAGACACTAGCATCCAGGAC 59.931 52.174 0.00 0.00 0.00 3.85
1932 2058 2.238084 AGACACTAGCATCCAGGACA 57.762 50.000 0.00 0.00 0.00 4.02
1933 2059 2.756907 AGACACTAGCATCCAGGACAT 58.243 47.619 0.00 0.00 0.00 3.06
1934 2060 3.916035 AGACACTAGCATCCAGGACATA 58.084 45.455 0.00 0.00 0.00 2.29
1935 2061 4.487804 AGACACTAGCATCCAGGACATAT 58.512 43.478 0.00 0.00 0.00 1.78
1936 2062 4.904251 AGACACTAGCATCCAGGACATATT 59.096 41.667 0.00 0.00 0.00 1.28
1937 2063 5.367937 AGACACTAGCATCCAGGACATATTT 59.632 40.000 0.00 0.00 0.00 1.40
1938 2064 6.006275 ACACTAGCATCCAGGACATATTTT 57.994 37.500 0.00 0.00 0.00 1.82
1939 2065 6.426587 ACACTAGCATCCAGGACATATTTTT 58.573 36.000 0.00 0.00 0.00 1.94
1940 2066 7.573710 ACACTAGCATCCAGGACATATTTTTA 58.426 34.615 0.00 0.00 0.00 1.52
1941 2067 8.220559 ACACTAGCATCCAGGACATATTTTTAT 58.779 33.333 0.00 0.00 0.00 1.40
1942 2068 9.725019 CACTAGCATCCAGGACATATTTTTATA 57.275 33.333 0.00 0.00 0.00 0.98
1943 2069 9.950496 ACTAGCATCCAGGACATATTTTTATAG 57.050 33.333 0.00 0.00 0.00 1.31
1946 2072 9.512588 AGCATCCAGGACATATTTTTATAGAAG 57.487 33.333 0.00 0.00 0.00 2.85
1947 2073 9.507329 GCATCCAGGACATATTTTTATAGAAGA 57.493 33.333 0.00 0.00 0.00 2.87
1950 2076 9.561069 TCCAGGACATATTTTTATAGAAGAAGC 57.439 33.333 0.00 0.00 0.00 3.86
1951 2077 8.787852 CCAGGACATATTTTTATAGAAGAAGCC 58.212 37.037 0.00 0.00 0.00 4.35
1952 2078 8.787852 CAGGACATATTTTTATAGAAGAAGCCC 58.212 37.037 0.00 0.00 0.00 5.19
1953 2079 8.502738 AGGACATATTTTTATAGAAGAAGCCCA 58.497 33.333 0.00 0.00 0.00 5.36
1954 2080 8.568794 GGACATATTTTTATAGAAGAAGCCCAC 58.431 37.037 0.00 0.00 0.00 4.61
1955 2081 8.465273 ACATATTTTTATAGAAGAAGCCCACC 57.535 34.615 0.00 0.00 0.00 4.61
1956 2082 7.505923 ACATATTTTTATAGAAGAAGCCCACCC 59.494 37.037 0.00 0.00 0.00 4.61
1957 2083 3.945640 TTTATAGAAGAAGCCCACCCC 57.054 47.619 0.00 0.00 0.00 4.95
1958 2084 1.420430 TATAGAAGAAGCCCACCCCG 58.580 55.000 0.00 0.00 0.00 5.73
1959 2085 0.326238 ATAGAAGAAGCCCACCCCGA 60.326 55.000 0.00 0.00 0.00 5.14
1960 2086 0.326238 TAGAAGAAGCCCACCCCGAT 60.326 55.000 0.00 0.00 0.00 4.18
1961 2087 1.452108 GAAGAAGCCCACCCCGATG 60.452 63.158 0.00 0.00 0.00 3.84
1962 2088 1.910580 GAAGAAGCCCACCCCGATGA 61.911 60.000 0.00 0.00 0.00 2.92
1963 2089 1.915078 AAGAAGCCCACCCCGATGAG 61.915 60.000 0.00 0.00 0.00 2.90
1964 2090 2.285368 AAGCCCACCCCGATGAGA 60.285 61.111 0.00 0.00 0.00 3.27
1965 2091 1.694169 AAGCCCACCCCGATGAGAT 60.694 57.895 0.00 0.00 0.00 2.75
1966 2092 1.700042 AAGCCCACCCCGATGAGATC 61.700 60.000 0.00 0.00 0.00 2.75
1982 2108 5.961395 TGAGATCGTAAAAATTCGCTACC 57.039 39.130 0.00 0.00 0.00 3.18
1983 2109 4.501559 TGAGATCGTAAAAATTCGCTACCG 59.498 41.667 0.00 0.00 0.00 4.02
1984 2110 4.675510 AGATCGTAAAAATTCGCTACCGA 58.324 39.130 0.00 0.00 42.66 4.69
1985 2111 4.501921 AGATCGTAAAAATTCGCTACCGAC 59.498 41.667 0.00 0.00 44.30 4.79
1986 2112 2.593775 TCGTAAAAATTCGCTACCGACG 59.406 45.455 0.00 0.00 44.30 5.12
1987 2113 2.284627 CGTAAAAATTCGCTACCGACGG 60.285 50.000 13.61 13.61 44.30 4.79
1988 2114 1.081094 AAAAATTCGCTACCGACGGG 58.919 50.000 20.00 1.81 44.30 5.28
1989 2115 0.247185 AAAATTCGCTACCGACGGGA 59.753 50.000 20.00 9.25 44.30 5.14
1990 2116 0.462789 AAATTCGCTACCGACGGGAT 59.537 50.000 20.00 0.00 44.30 3.85
1991 2117 0.462789 AATTCGCTACCGACGGGATT 59.537 50.000 20.00 0.00 44.30 3.01
1992 2118 0.462789 ATTCGCTACCGACGGGATTT 59.537 50.000 20.00 0.00 44.30 2.17
1993 2119 1.102154 TTCGCTACCGACGGGATTTA 58.898 50.000 20.00 0.00 44.30 1.40
1994 2120 1.102154 TCGCTACCGACGGGATTTAA 58.898 50.000 20.00 0.00 38.82 1.52
1995 2121 1.476085 TCGCTACCGACGGGATTTAAA 59.524 47.619 20.00 0.00 38.82 1.52
1996 2122 1.589779 CGCTACCGACGGGATTTAAAC 59.410 52.381 20.00 0.00 36.97 2.01
1997 2123 2.736400 CGCTACCGACGGGATTTAAACT 60.736 50.000 20.00 0.00 36.97 2.66
1998 2124 2.862536 GCTACCGACGGGATTTAAACTC 59.137 50.000 20.00 0.00 36.97 3.01
1999 2125 2.391616 ACCGACGGGATTTAAACTCC 57.608 50.000 20.00 0.00 36.97 3.85
2000 2126 1.283736 CCGACGGGATTTAAACTCCG 58.716 55.000 22.04 22.04 46.95 4.63
2001 2127 1.283736 CGACGGGATTTAAACTCCGG 58.716 55.000 25.23 20.38 45.97 5.14
2002 2128 1.404583 CGACGGGATTTAAACTCCGGT 60.405 52.381 25.23 22.44 45.74 5.28
2003 2129 2.391616 ACGGGATTTAAACTCCGGTC 57.608 50.000 25.23 6.00 45.97 4.79
2004 2130 1.904537 ACGGGATTTAAACTCCGGTCT 59.095 47.619 25.23 9.94 45.97 3.85
2005 2131 3.099141 ACGGGATTTAAACTCCGGTCTA 58.901 45.455 25.23 0.00 45.97 2.59
2006 2132 3.118992 ACGGGATTTAAACTCCGGTCTAC 60.119 47.826 25.23 6.96 45.97 2.59
2007 2133 3.119029 CGGGATTTAAACTCCGGTCTACA 60.119 47.826 18.15 0.00 38.93 2.74
2008 2134 4.621274 CGGGATTTAAACTCCGGTCTACAA 60.621 45.833 18.15 0.00 38.93 2.41
2009 2135 4.874396 GGGATTTAAACTCCGGTCTACAAG 59.126 45.833 0.00 0.00 33.29 3.16
2010 2136 4.874396 GGATTTAAACTCCGGTCTACAAGG 59.126 45.833 0.00 0.00 0.00 3.61
2011 2137 5.337813 GGATTTAAACTCCGGTCTACAAGGA 60.338 44.000 0.00 0.00 0.00 3.36
2012 2138 5.549742 TTTAAACTCCGGTCTACAAGGAA 57.450 39.130 0.00 0.00 33.10 3.36
2013 2139 5.549742 TTAAACTCCGGTCTACAAGGAAA 57.450 39.130 0.00 0.00 33.10 3.13
2014 2140 4.635699 AAACTCCGGTCTACAAGGAAAT 57.364 40.909 0.00 0.00 33.10 2.17
2015 2141 5.750352 AAACTCCGGTCTACAAGGAAATA 57.250 39.130 0.00 0.00 33.10 1.40
2016 2142 4.732672 ACTCCGGTCTACAAGGAAATAC 57.267 45.455 0.00 0.00 33.10 1.89
2017 2143 3.450096 ACTCCGGTCTACAAGGAAATACC 59.550 47.826 0.00 0.00 39.35 2.73
2018 2144 3.443052 TCCGGTCTACAAGGAAATACCA 58.557 45.455 0.00 0.00 42.04 3.25
2019 2145 3.196254 TCCGGTCTACAAGGAAATACCAC 59.804 47.826 0.00 0.00 42.04 4.16
2020 2146 3.197116 CCGGTCTACAAGGAAATACCACT 59.803 47.826 0.00 0.00 42.04 4.00
2021 2147 4.181578 CGGTCTACAAGGAAATACCACTG 58.818 47.826 0.00 0.00 42.04 3.66
2022 2148 4.322499 CGGTCTACAAGGAAATACCACTGT 60.322 45.833 0.00 0.00 42.04 3.55
2023 2149 4.935808 GGTCTACAAGGAAATACCACTGTG 59.064 45.833 0.00 0.00 42.04 3.66
2024 2150 5.279809 GGTCTACAAGGAAATACCACTGTGA 60.280 44.000 9.86 0.00 42.04 3.58
2025 2151 5.638234 GTCTACAAGGAAATACCACTGTGAC 59.362 44.000 9.86 0.00 42.04 3.67
2026 2152 3.751518 ACAAGGAAATACCACTGTGACC 58.248 45.455 9.86 3.18 42.04 4.02
2027 2153 3.394606 ACAAGGAAATACCACTGTGACCT 59.605 43.478 9.86 5.30 42.04 3.85
2028 2154 4.141251 ACAAGGAAATACCACTGTGACCTT 60.141 41.667 9.86 10.44 42.04 3.50
2029 2155 4.021102 AGGAAATACCACTGTGACCTTG 57.979 45.455 9.86 0.00 42.04 3.61
2030 2156 2.488153 GGAAATACCACTGTGACCTTGC 59.512 50.000 9.86 0.00 38.79 4.01
2031 2157 2.200373 AATACCACTGTGACCTTGCC 57.800 50.000 9.86 0.00 0.00 4.52
2032 2158 1.064003 ATACCACTGTGACCTTGCCA 58.936 50.000 9.86 0.00 0.00 4.92
2033 2159 0.107831 TACCACTGTGACCTTGCCAC 59.892 55.000 9.86 0.00 35.23 5.01
2034 2160 1.149174 CCACTGTGACCTTGCCACT 59.851 57.895 9.86 0.00 35.66 4.00
2035 2161 1.168407 CCACTGTGACCTTGCCACTG 61.168 60.000 9.86 0.00 38.76 3.66
2036 2162 1.149174 ACTGTGACCTTGCCACTGG 59.851 57.895 0.00 0.00 37.66 4.00
2037 2163 1.601759 CTGTGACCTTGCCACTGGG 60.602 63.158 0.00 0.00 35.66 4.45
2047 2173 3.066190 CCACTGGGCTGCCATGTG 61.066 66.667 26.03 26.03 0.00 3.21
2048 2174 2.034532 CACTGGGCTGCCATGTGA 59.965 61.111 27.79 5.65 0.00 3.58
2049 2175 1.604308 CACTGGGCTGCCATGTGAA 60.604 57.895 27.79 5.60 0.00 3.18
2050 2176 1.153524 ACTGGGCTGCCATGTGAAA 59.846 52.632 22.05 0.00 0.00 2.69
2051 2177 0.896940 ACTGGGCTGCCATGTGAAAG 60.897 55.000 22.05 8.00 0.00 2.62
2052 2178 0.609957 CTGGGCTGCCATGTGAAAGA 60.610 55.000 22.05 0.00 0.00 2.52
2053 2179 0.609957 TGGGCTGCCATGTGAAAGAG 60.610 55.000 22.05 0.00 0.00 2.85
2054 2180 0.610232 GGGCTGCCATGTGAAAGAGT 60.610 55.000 22.05 0.00 0.00 3.24
2061 2187 2.618241 GCCATGTGAAAGAGTGTGTTGA 59.382 45.455 0.00 0.00 0.00 3.18
2111 2239 4.383850 TGTGTAACATTGCTGTTGCTTT 57.616 36.364 8.08 0.00 45.67 3.51
2112 2240 4.753233 TGTGTAACATTGCTGTTGCTTTT 58.247 34.783 8.08 0.00 45.67 2.27
2113 2241 5.174395 TGTGTAACATTGCTGTTGCTTTTT 58.826 33.333 8.08 0.00 45.67 1.94
2135 2263 5.720371 TTTTGCAGGTATAACATTGCTGT 57.280 34.783 3.92 0.00 37.45 4.40
2137 2265 4.700268 TGCAGGTATAACATTGCTGTTG 57.300 40.909 3.92 0.00 45.16 3.33
2138 2266 3.119531 TGCAGGTATAACATTGCTGTTGC 60.120 43.478 3.92 0.00 45.16 4.17
2139 2267 3.129287 GCAGGTATAACATTGCTGTTGCT 59.871 43.478 1.78 0.00 45.16 3.91
2140 2268 4.665212 CAGGTATAACATTGCTGTTGCTG 58.335 43.478 1.78 0.00 45.16 4.41
2190 2318 6.472016 TGTATACATGTGTGTGGTTTCTGAT 58.528 36.000 9.11 0.00 39.39 2.90
2191 2319 6.593770 TGTATACATGTGTGTGGTTTCTGATC 59.406 38.462 9.11 0.00 39.39 2.92
2214 2342 1.088306 CTACGAGGACGAGAGCTTGT 58.912 55.000 0.00 0.00 42.66 3.16
2215 2343 2.093816 TCTACGAGGACGAGAGCTTGTA 60.094 50.000 0.00 0.00 42.66 2.41
2217 2345 0.099082 CGAGGACGAGAGCTTGTACC 59.901 60.000 0.00 0.00 42.66 3.34
2218 2346 1.465794 GAGGACGAGAGCTTGTACCT 58.534 55.000 0.00 7.95 31.56 3.08
2219 2347 1.133407 GAGGACGAGAGCTTGTACCTG 59.867 57.143 11.28 0.00 30.12 4.00
2220 2348 0.173708 GGACGAGAGCTTGTACCTGG 59.826 60.000 0.00 0.00 0.00 4.45
2221 2349 0.889306 GACGAGAGCTTGTACCTGGT 59.111 55.000 4.05 4.05 0.00 4.00
2222 2350 1.272769 GACGAGAGCTTGTACCTGGTT 59.727 52.381 3.84 0.00 0.00 3.67
2223 2351 2.490903 GACGAGAGCTTGTACCTGGTTA 59.509 50.000 3.84 0.00 0.00 2.85
2224 2352 3.097614 ACGAGAGCTTGTACCTGGTTAT 58.902 45.455 3.84 0.00 0.00 1.89
2225 2353 3.130693 ACGAGAGCTTGTACCTGGTTATC 59.869 47.826 3.84 0.00 0.00 1.75
2229 2357 4.101741 AGAGCTTGTACCTGGTTATCATCC 59.898 45.833 3.84 0.00 0.00 3.51
2230 2358 3.780294 AGCTTGTACCTGGTTATCATCCA 59.220 43.478 3.84 0.00 0.00 3.41
2231 2359 4.413520 AGCTTGTACCTGGTTATCATCCAT 59.586 41.667 3.84 0.00 34.26 3.41
2232 2360 5.606749 AGCTTGTACCTGGTTATCATCCATA 59.393 40.000 3.84 0.00 34.26 2.74
2233 2361 5.701290 GCTTGTACCTGGTTATCATCCATAC 59.299 44.000 3.84 0.00 34.26 2.39
2234 2362 5.462530 TGTACCTGGTTATCATCCATACG 57.537 43.478 3.84 0.00 34.26 3.06
2235 2363 4.897076 TGTACCTGGTTATCATCCATACGT 59.103 41.667 3.84 0.00 34.26 3.57
2236 2364 4.336889 ACCTGGTTATCATCCATACGTG 57.663 45.455 0.00 0.00 34.26 4.49
2237 2365 3.067106 CCTGGTTATCATCCATACGTGC 58.933 50.000 0.00 0.00 34.26 5.34
2238 2366 2.731451 CTGGTTATCATCCATACGTGCG 59.269 50.000 0.00 0.00 34.26 5.34
2239 2367 2.362717 TGGTTATCATCCATACGTGCGA 59.637 45.455 0.00 0.00 0.00 5.10
2240 2368 2.729882 GGTTATCATCCATACGTGCGAC 59.270 50.000 0.00 0.00 0.00 5.19
2241 2369 3.377439 GTTATCATCCATACGTGCGACA 58.623 45.455 0.00 0.00 0.00 4.35
2242 2370 2.595124 ATCATCCATACGTGCGACAA 57.405 45.000 0.00 0.00 0.00 3.18
2243 2371 1.921243 TCATCCATACGTGCGACAAG 58.079 50.000 0.00 0.00 0.00 3.16
2244 2372 1.203758 TCATCCATACGTGCGACAAGT 59.796 47.619 0.00 0.00 0.00 3.16
2245 2373 2.424246 TCATCCATACGTGCGACAAGTA 59.576 45.455 0.00 7.72 33.49 2.24
2246 2374 3.119424 TCATCCATACGTGCGACAAGTAA 60.119 43.478 0.00 0.00 32.82 2.24
2247 2375 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
2248 2376 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
2249 2377 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
2250 2378 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
2251 2379 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
2252 2380 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
2253 2381 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
2254 2382 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
2291 2419 1.228459 GGGCCGGGTTAATCCATCC 60.228 63.158 2.18 4.68 38.11 3.51
2298 2426 2.943033 CGGGTTAATCCATCCACAGAAC 59.057 50.000 5.41 0.00 38.11 3.01
2306 2434 1.833630 CCATCCACAGAACTCCAGCTA 59.166 52.381 0.00 0.00 0.00 3.32
2326 2455 4.509600 GCTATCTTATCCTCACAACAGTGC 59.490 45.833 0.00 0.00 33.28 4.40
2334 2463 0.176910 TCACAACAGTGCTCCGTTCA 59.823 50.000 0.00 0.00 33.28 3.18
2335 2464 0.583438 CACAACAGTGCTCCGTTCAG 59.417 55.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.154197 GTTTGGTAGCTTCACCGACC 58.846 55.000 0.00 0.00 41.88 4.79
44 45 6.143496 GCTTTAGTTTTACCAGTTTCTGAGC 58.857 40.000 0.00 0.00 32.44 4.26
55 56 2.745821 CTGGACGGGCTTTAGTTTTACC 59.254 50.000 0.00 0.00 0.00 2.85
57 58 3.557686 GGTCTGGACGGGCTTTAGTTTTA 60.558 47.826 0.00 0.00 0.00 1.52
99 100 3.311110 ATGCCAGTGACCGACGGT 61.311 61.111 21.93 21.93 39.44 4.83
103 104 2.046988 CTGCATGCCAGTGACCGA 60.047 61.111 16.68 0.00 36.79 4.69
126 133 5.632118 TGTCCTCATAGTCATAGGTACCTC 58.368 45.833 20.32 3.58 0.00 3.85
186 193 0.110192 GTTTTGGTGCTAGACTGCGC 60.110 55.000 0.00 0.00 42.15 6.09
353 381 4.171103 GGGATCGGGTTCACGGGG 62.171 72.222 0.00 0.00 0.00 5.73
428 456 0.175531 AAGGTGTGTTGTTGGCTTGC 59.824 50.000 0.00 0.00 0.00 4.01
459 487 4.332828 TCTCGTGGAGAATCACTCACTAA 58.667 43.478 0.00 0.00 46.54 2.24
463 491 4.781934 TCTATCTCGTGGAGAATCACTCA 58.218 43.478 0.00 0.00 46.54 3.41
466 494 8.756864 GTTTTTATCTATCTCGTGGAGAATCAC 58.243 37.037 0.00 0.00 42.27 3.06
467 495 8.474831 TGTTTTTATCTATCTCGTGGAGAATCA 58.525 33.333 0.00 0.00 42.27 2.57
469 497 9.482627 GATGTTTTTATCTATCTCGTGGAGAAT 57.517 33.333 0.00 0.00 42.27 2.40
470 498 7.926555 GGATGTTTTTATCTATCTCGTGGAGAA 59.073 37.037 0.00 0.00 42.27 2.87
471 499 7.069455 TGGATGTTTTTATCTATCTCGTGGAGA 59.931 37.037 0.00 0.00 43.20 3.71
472 500 7.210174 TGGATGTTTTTATCTATCTCGTGGAG 58.790 38.462 0.00 0.00 0.00 3.86
473 501 7.069455 TCTGGATGTTTTTATCTATCTCGTGGA 59.931 37.037 0.00 0.00 0.00 4.02
475 503 7.096436 CGTCTGGATGTTTTTATCTATCTCGTG 60.096 40.741 0.00 0.00 0.00 4.35
476 504 6.918569 CGTCTGGATGTTTTTATCTATCTCGT 59.081 38.462 0.00 0.00 0.00 4.18
478 506 8.649973 AACGTCTGGATGTTTTTATCTATCTC 57.350 34.615 2.71 0.00 37.24 2.75
490 518 1.336755 GGTGCAAAACGTCTGGATGTT 59.663 47.619 2.71 2.71 41.91 2.71
491 519 0.951558 GGTGCAAAACGTCTGGATGT 59.048 50.000 0.00 0.00 0.00 3.06
492 520 1.238439 AGGTGCAAAACGTCTGGATG 58.762 50.000 0.00 0.00 0.00 3.51
493 521 2.699954 CTAGGTGCAAAACGTCTGGAT 58.300 47.619 0.00 0.00 0.00 3.41
494 522 1.876416 GCTAGGTGCAAAACGTCTGGA 60.876 52.381 0.00 0.00 42.31 3.86
495 523 0.517316 GCTAGGTGCAAAACGTCTGG 59.483 55.000 0.00 0.00 42.31 3.86
521 549 2.815647 GGTAGTGCTGTGCGAGGC 60.816 66.667 0.00 0.00 0.00 4.70
522 550 2.507102 CGGTAGTGCTGTGCGAGG 60.507 66.667 0.00 0.00 0.00 4.63
533 571 1.602237 CACCCAATCCAGCGGTAGT 59.398 57.895 0.00 0.00 0.00 2.73
534 572 1.819632 GCACCCAATCCAGCGGTAG 60.820 63.158 0.00 0.00 0.00 3.18
535 573 2.270850 GCACCCAATCCAGCGGTA 59.729 61.111 0.00 0.00 0.00 4.02
539 577 4.120331 GTGCGCACCCAATCCAGC 62.120 66.667 30.12 0.00 0.00 4.85
540 578 3.803082 CGTGCGCACCCAATCCAG 61.803 66.667 33.23 13.90 0.00 3.86
571 609 3.607987 GTTCGATCGGTGAGCGCG 61.608 66.667 16.41 0.00 41.41 6.86
572 610 3.607987 CGTTCGATCGGTGAGCGC 61.608 66.667 16.41 0.00 41.41 5.92
573 611 3.607987 GCGTTCGATCGGTGAGCG 61.608 66.667 16.41 11.07 43.08 5.03
574 612 3.607987 CGCGTTCGATCGGTGAGC 61.608 66.667 16.41 14.33 38.10 4.26
575 613 2.202440 ACGCGTTCGATCGGTGAG 60.202 61.111 16.41 9.54 39.41 3.51
576 614 2.202388 GACGCGTTCGATCGGTGA 60.202 61.111 15.53 0.00 39.41 4.02
577 615 1.798368 GATGACGCGTTCGATCGGTG 61.798 60.000 15.53 8.54 39.41 4.94
578 616 1.585521 GATGACGCGTTCGATCGGT 60.586 57.895 15.53 12.57 39.41 4.69
579 617 0.934901 ATGATGACGCGTTCGATCGG 60.935 55.000 15.53 9.75 39.41 4.18
580 618 0.846401 AATGATGACGCGTTCGATCG 59.154 50.000 15.53 9.36 39.41 3.69
581 619 3.181540 CCATAATGATGACGCGTTCGATC 60.182 47.826 15.53 15.77 39.41 3.69
582 620 2.731451 CCATAATGATGACGCGTTCGAT 59.269 45.455 15.53 6.09 39.41 3.59
583 621 2.124122 CCATAATGATGACGCGTTCGA 58.876 47.619 15.53 0.09 39.41 3.71
584 622 1.858458 ACCATAATGATGACGCGTTCG 59.142 47.619 15.53 0.00 42.43 3.95
585 623 3.944422 AACCATAATGATGACGCGTTC 57.056 42.857 15.53 8.90 34.73 3.95
586 624 5.297547 AGATAACCATAATGATGACGCGTT 58.702 37.500 15.53 0.00 34.73 4.84
587 625 4.883083 AGATAACCATAATGATGACGCGT 58.117 39.130 13.85 13.85 34.73 6.01
588 626 5.845985 AAGATAACCATAATGATGACGCG 57.154 39.130 3.53 3.53 34.73 6.01
589 627 6.017109 ACCAAAGATAACCATAATGATGACGC 60.017 38.462 0.00 0.00 34.73 5.19
590 628 7.496529 ACCAAAGATAACCATAATGATGACG 57.503 36.000 0.00 0.00 34.73 4.35
593 631 8.819974 GCAAAACCAAAGATAACCATAATGATG 58.180 33.333 0.00 0.00 0.00 3.07
594 632 7.986889 GGCAAAACCAAAGATAACCATAATGAT 59.013 33.333 0.00 0.00 38.86 2.45
595 633 7.327214 GGCAAAACCAAAGATAACCATAATGA 58.673 34.615 0.00 0.00 38.86 2.57
596 634 7.538303 GGCAAAACCAAAGATAACCATAATG 57.462 36.000 0.00 0.00 38.86 1.90
612 650 1.134551 TCTTGTTGCCTTGGCAAAACC 60.135 47.619 26.12 15.64 39.84 3.27
613 651 1.933181 GTCTTGTTGCCTTGGCAAAAC 59.067 47.619 26.12 17.15 0.00 2.43
614 652 1.470632 CGTCTTGTTGCCTTGGCAAAA 60.471 47.619 26.12 19.69 0.00 2.44
615 653 0.102120 CGTCTTGTTGCCTTGGCAAA 59.898 50.000 26.12 12.70 0.00 3.68
616 654 0.749818 TCGTCTTGTTGCCTTGGCAA 60.750 50.000 21.59 21.59 0.00 4.52
617 655 0.537143 ATCGTCTTGTTGCCTTGGCA 60.537 50.000 10.65 10.65 0.00 4.92
618 656 0.109597 CATCGTCTTGTTGCCTTGGC 60.110 55.000 4.43 4.43 0.00 4.52
619 657 0.109597 GCATCGTCTTGTTGCCTTGG 60.110 55.000 0.00 0.00 37.33 3.61
620 658 0.592637 TGCATCGTCTTGTTGCCTTG 59.407 50.000 0.00 0.00 41.64 3.61
621 659 1.001378 GTTGCATCGTCTTGTTGCCTT 60.001 47.619 0.00 0.00 41.64 4.35
622 660 0.593128 GTTGCATCGTCTTGTTGCCT 59.407 50.000 0.00 0.00 41.64 4.75
623 661 0.593128 AGTTGCATCGTCTTGTTGCC 59.407 50.000 0.00 0.00 41.64 4.52
624 662 2.405892 AAGTTGCATCGTCTTGTTGC 57.594 45.000 0.00 0.00 42.47 4.17
625 663 5.569059 GGAATTAAGTTGCATCGTCTTGTTG 59.431 40.000 0.00 0.00 0.00 3.33
626 664 5.240623 TGGAATTAAGTTGCATCGTCTTGTT 59.759 36.000 0.00 0.00 32.79 2.83
627 665 4.759693 TGGAATTAAGTTGCATCGTCTTGT 59.240 37.500 0.00 0.00 32.79 3.16
628 666 5.295431 TGGAATTAAGTTGCATCGTCTTG 57.705 39.130 0.00 0.00 32.79 3.02
636 674 3.081061 AGCACGATGGAATTAAGTTGCA 58.919 40.909 0.00 0.00 42.62 4.08
637 675 3.764885 AGCACGATGGAATTAAGTTGC 57.235 42.857 0.00 0.00 0.00 4.17
652 690 1.063469 CCTAATTTGGCCGTAAGCACG 59.937 52.381 0.00 0.00 46.50 5.34
658 696 2.239150 TGGCTAACCTAATTTGGCCGTA 59.761 45.455 5.79 0.00 39.45 4.02
660 698 1.757682 TGGCTAACCTAATTTGGCCG 58.242 50.000 5.79 0.00 39.45 6.13
675 717 5.303078 AGAGATACTAAACATGACGATGGCT 59.697 40.000 0.00 0.00 33.39 4.75
677 719 6.360947 CGAAGAGATACTAAACATGACGATGG 59.639 42.308 0.00 0.00 33.39 3.51
678 720 6.913132 ACGAAGAGATACTAAACATGACGATG 59.087 38.462 0.00 0.00 35.49 3.84
679 721 7.028926 ACGAAGAGATACTAAACATGACGAT 57.971 36.000 0.00 0.00 0.00 3.73
681 723 5.681982 GGACGAAGAGATACTAAACATGACG 59.318 44.000 0.00 0.00 0.00 4.35
682 724 5.681982 CGGACGAAGAGATACTAAACATGAC 59.318 44.000 0.00 0.00 0.00 3.06
683 725 5.220989 CCGGACGAAGAGATACTAAACATGA 60.221 44.000 0.00 0.00 0.00 3.07
684 726 4.976731 CCGGACGAAGAGATACTAAACATG 59.023 45.833 0.00 0.00 0.00 3.21
685 727 4.885907 TCCGGACGAAGAGATACTAAACAT 59.114 41.667 0.00 0.00 0.00 2.71
686 728 4.264253 TCCGGACGAAGAGATACTAAACA 58.736 43.478 0.00 0.00 0.00 2.83
687 729 4.889832 TCCGGACGAAGAGATACTAAAC 57.110 45.455 0.00 0.00 0.00 2.01
688 730 6.270815 CAATTCCGGACGAAGAGATACTAAA 58.729 40.000 1.83 0.00 32.78 1.85
689 731 5.735354 GCAATTCCGGACGAAGAGATACTAA 60.735 44.000 1.83 0.00 32.78 2.24
690 732 4.261489 GCAATTCCGGACGAAGAGATACTA 60.261 45.833 1.83 0.00 32.78 1.82
691 733 3.491104 GCAATTCCGGACGAAGAGATACT 60.491 47.826 1.83 0.00 32.78 2.12
692 734 2.795470 GCAATTCCGGACGAAGAGATAC 59.205 50.000 1.83 0.00 32.78 2.24
693 735 2.693591 AGCAATTCCGGACGAAGAGATA 59.306 45.455 1.83 0.00 32.78 1.98
694 736 1.482593 AGCAATTCCGGACGAAGAGAT 59.517 47.619 1.83 0.00 32.78 2.75
695 737 0.895530 AGCAATTCCGGACGAAGAGA 59.104 50.000 1.83 0.00 32.78 3.10
696 738 1.394917 CAAGCAATTCCGGACGAAGAG 59.605 52.381 1.83 0.00 32.78 2.85
697 739 1.438651 CAAGCAATTCCGGACGAAGA 58.561 50.000 1.83 0.00 32.78 2.87
698 740 0.179189 GCAAGCAATTCCGGACGAAG 60.179 55.000 1.83 0.00 32.78 3.79
699 741 0.886938 TGCAAGCAATTCCGGACGAA 60.887 50.000 1.83 0.00 34.14 3.85
700 742 0.676466 ATGCAAGCAATTCCGGACGA 60.676 50.000 1.83 0.00 0.00 4.20
701 743 0.523968 CATGCAAGCAATTCCGGACG 60.524 55.000 1.83 0.00 0.00 4.79
702 744 0.810648 TCATGCAAGCAATTCCGGAC 59.189 50.000 1.83 0.00 0.00 4.79
703 745 1.543607 TTCATGCAAGCAATTCCGGA 58.456 45.000 0.00 0.00 0.00 5.14
704 746 2.159212 TCATTCATGCAAGCAATTCCGG 60.159 45.455 0.00 0.00 0.00 5.14
705 747 3.113322 CTCATTCATGCAAGCAATTCCG 58.887 45.455 0.00 0.00 0.00 4.30
706 748 3.863424 CACTCATTCATGCAAGCAATTCC 59.137 43.478 0.00 0.00 0.00 3.01
707 749 3.306166 GCACTCATTCATGCAAGCAATTC 59.694 43.478 0.00 0.00 41.65 2.17
708 750 3.259064 GCACTCATTCATGCAAGCAATT 58.741 40.909 0.00 0.00 41.65 2.32
709 751 2.888594 GCACTCATTCATGCAAGCAAT 58.111 42.857 0.00 0.00 41.65 3.56
710 752 2.357327 GCACTCATTCATGCAAGCAA 57.643 45.000 0.00 0.00 41.65 3.91
716 758 2.225963 GCCTAGATGCACTCATTCATGC 59.774 50.000 0.00 0.00 42.40 4.06
717 759 3.473625 TGCCTAGATGCACTCATTCATG 58.526 45.455 0.00 0.00 36.04 3.07
718 760 3.851458 TGCCTAGATGCACTCATTCAT 57.149 42.857 0.00 0.00 36.04 2.57
719 761 3.851458 ATGCCTAGATGCACTCATTCA 57.149 42.857 0.00 0.00 45.48 2.57
720 762 6.814506 AAATATGCCTAGATGCACTCATTC 57.185 37.500 0.00 0.00 45.48 2.67
721 763 6.774170 TGAAAATATGCCTAGATGCACTCATT 59.226 34.615 0.00 0.00 45.48 2.57
722 764 6.301486 TGAAAATATGCCTAGATGCACTCAT 58.699 36.000 0.00 0.00 45.48 2.90
723 765 5.683681 TGAAAATATGCCTAGATGCACTCA 58.316 37.500 0.00 0.00 45.48 3.41
724 766 5.762218 ACTGAAAATATGCCTAGATGCACTC 59.238 40.000 0.00 0.00 45.48 3.51
725 767 5.688807 ACTGAAAATATGCCTAGATGCACT 58.311 37.500 0.00 0.00 45.48 4.40
726 768 6.261826 AGAACTGAAAATATGCCTAGATGCAC 59.738 38.462 0.00 0.00 45.48 4.57
727 769 6.261603 CAGAACTGAAAATATGCCTAGATGCA 59.738 38.462 0.00 0.00 46.94 3.96
728 770 6.484643 TCAGAACTGAAAATATGCCTAGATGC 59.515 38.462 1.79 0.00 36.53 3.91
729 771 8.442632 TTCAGAACTGAAAATATGCCTAGATG 57.557 34.615 13.78 0.00 45.56 2.90
744 786 6.126863 AGAAATGGGTGTATTCAGAACTGA 57.873 37.500 0.00 0.00 37.91 3.41
745 787 6.036083 CGTAGAAATGGGTGTATTCAGAACTG 59.964 42.308 0.00 0.00 0.00 3.16
746 788 6.070995 TCGTAGAAATGGGTGTATTCAGAACT 60.071 38.462 0.00 0.00 0.00 3.01
747 789 6.035758 GTCGTAGAAATGGGTGTATTCAGAAC 59.964 42.308 0.00 0.00 39.69 3.01
748 790 6.103997 GTCGTAGAAATGGGTGTATTCAGAA 58.896 40.000 0.00 0.00 39.69 3.02
749 791 5.186215 TGTCGTAGAAATGGGTGTATTCAGA 59.814 40.000 0.00 0.00 39.69 3.27
750 792 5.416083 TGTCGTAGAAATGGGTGTATTCAG 58.584 41.667 0.00 0.00 39.69 3.02
751 793 5.408880 TGTCGTAGAAATGGGTGTATTCA 57.591 39.130 0.00 0.00 39.69 2.57
752 794 5.873164 ACTTGTCGTAGAAATGGGTGTATTC 59.127 40.000 0.00 0.00 39.69 1.75
753 795 5.801380 ACTTGTCGTAGAAATGGGTGTATT 58.199 37.500 0.00 0.00 39.69 1.89
754 796 5.416271 ACTTGTCGTAGAAATGGGTGTAT 57.584 39.130 0.00 0.00 39.69 2.29
755 797 4.877378 ACTTGTCGTAGAAATGGGTGTA 57.123 40.909 0.00 0.00 39.69 2.90
756 798 3.764237 ACTTGTCGTAGAAATGGGTGT 57.236 42.857 0.00 0.00 39.69 4.16
757 799 6.455113 CGAATAACTTGTCGTAGAAATGGGTG 60.455 42.308 0.00 0.00 39.69 4.61
758 800 5.579511 CGAATAACTTGTCGTAGAAATGGGT 59.420 40.000 0.00 0.00 39.69 4.51
759 801 5.006358 CCGAATAACTTGTCGTAGAAATGGG 59.994 44.000 0.00 0.00 39.69 4.00
760 802 5.808540 TCCGAATAACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
761 803 6.880822 TCCGAATAACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
762 804 6.869913 TGTTCCGAATAACTTGTCGTAGAAAT 59.130 34.615 0.00 0.00 39.69 2.17
763 805 6.215121 TGTTCCGAATAACTTGTCGTAGAAA 58.785 36.000 0.00 0.00 39.69 2.52
764 806 5.771469 TGTTCCGAATAACTTGTCGTAGAA 58.229 37.500 0.00 0.00 39.69 2.10
765 807 5.181811 TCTGTTCCGAATAACTTGTCGTAGA 59.818 40.000 0.00 0.00 35.48 2.59
766 808 5.396484 TCTGTTCCGAATAACTTGTCGTAG 58.604 41.667 0.00 0.00 35.48 3.51
767 809 5.375417 TCTGTTCCGAATAACTTGTCGTA 57.625 39.130 0.00 0.00 35.48 3.43
768 810 4.235360 CTCTGTTCCGAATAACTTGTCGT 58.765 43.478 0.00 0.00 35.48 4.34
769 811 3.612860 CCTCTGTTCCGAATAACTTGTCG 59.387 47.826 0.00 0.00 37.01 4.35
770 812 3.933332 CCCTCTGTTCCGAATAACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
771 813 3.581332 TCCCTCTGTTCCGAATAACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
772 814 4.184629 CTCCCTCTGTTCCGAATAACTTG 58.815 47.826 0.00 0.00 0.00 3.16
773 815 3.838903 ACTCCCTCTGTTCCGAATAACTT 59.161 43.478 0.00 0.00 0.00 2.66
774 816 3.442076 ACTCCCTCTGTTCCGAATAACT 58.558 45.455 0.00 0.00 0.00 2.24
775 817 3.889520 ACTCCCTCTGTTCCGAATAAC 57.110 47.619 0.00 0.00 0.00 1.89
776 818 4.607239 AGTACTCCCTCTGTTCCGAATAA 58.393 43.478 0.00 0.00 0.00 1.40
777 819 4.246712 AGTACTCCCTCTGTTCCGAATA 57.753 45.455 0.00 0.00 0.00 1.75
778 820 3.103080 AGTACTCCCTCTGTTCCGAAT 57.897 47.619 0.00 0.00 0.00 3.34
779 821 2.599408 AGTACTCCCTCTGTTCCGAA 57.401 50.000 0.00 0.00 0.00 4.30
780 822 2.599408 AAGTACTCCCTCTGTTCCGA 57.401 50.000 0.00 0.00 0.00 4.55
781 823 3.762823 AGTAAAGTACTCCCTCTGTTCCG 59.237 47.826 0.00 0.00 32.47 4.30
782 824 5.741962 AAGTAAAGTACTCCCTCTGTTCC 57.258 43.478 0.00 0.00 38.26 3.62
783 825 7.465353 ACTAAGTAAAGTACTCCCTCTGTTC 57.535 40.000 0.00 0.00 38.26 3.18
784 826 7.852550 AACTAAGTAAAGTACTCCCTCTGTT 57.147 36.000 0.00 0.00 38.26 3.16
785 827 7.852550 AAACTAAGTAAAGTACTCCCTCTGT 57.147 36.000 0.00 0.00 38.26 3.41
786 828 8.148999 ACAAAACTAAGTAAAGTACTCCCTCTG 58.851 37.037 0.00 0.00 38.26 3.35
787 829 8.260099 ACAAAACTAAGTAAAGTACTCCCTCT 57.740 34.615 0.00 0.00 38.26 3.69
788 830 9.987272 TTACAAAACTAAGTAAAGTACTCCCTC 57.013 33.333 0.00 0.00 38.26 4.30
813 855 8.073768 CGGCGAATATATAACATCTTTTGGTTT 58.926 33.333 0.00 0.00 0.00 3.27
814 856 7.442969 TCGGCGAATATATAACATCTTTTGGTT 59.557 33.333 7.35 0.00 0.00 3.67
815 857 6.932400 TCGGCGAATATATAACATCTTTTGGT 59.068 34.615 7.35 0.00 0.00 3.67
816 858 7.359262 TCGGCGAATATATAACATCTTTTGG 57.641 36.000 7.35 0.00 0.00 3.28
817 859 7.330946 TCCTCGGCGAATATATAACATCTTTTG 59.669 37.037 12.13 0.00 0.00 2.44
818 860 7.331193 GTCCTCGGCGAATATATAACATCTTTT 59.669 37.037 12.13 0.00 0.00 2.27
819 861 6.812160 GTCCTCGGCGAATATATAACATCTTT 59.188 38.462 12.13 0.00 0.00 2.52
820 862 6.331061 GTCCTCGGCGAATATATAACATCTT 58.669 40.000 12.13 0.00 0.00 2.40
821 863 5.163540 GGTCCTCGGCGAATATATAACATCT 60.164 44.000 12.13 0.00 0.00 2.90
822 864 5.041940 GGTCCTCGGCGAATATATAACATC 58.958 45.833 12.13 0.00 0.00 3.06
823 865 4.142004 GGGTCCTCGGCGAATATATAACAT 60.142 45.833 12.13 0.00 0.00 2.71
824 866 3.194116 GGGTCCTCGGCGAATATATAACA 59.806 47.826 12.13 0.00 0.00 2.41
825 867 3.429960 GGGGTCCTCGGCGAATATATAAC 60.430 52.174 12.13 1.50 0.00 1.89
826 868 2.762327 GGGGTCCTCGGCGAATATATAA 59.238 50.000 12.13 0.00 0.00 0.98
827 869 2.381911 GGGGTCCTCGGCGAATATATA 58.618 52.381 12.13 0.00 0.00 0.86
828 870 1.192428 GGGGTCCTCGGCGAATATAT 58.808 55.000 12.13 0.00 0.00 0.86
831 873 3.221389 CGGGGTCCTCGGCGAATA 61.221 66.667 12.13 0.00 0.00 1.75
839 881 0.949397 GTTTTGACAACGGGGTCCTC 59.051 55.000 6.31 0.00 36.97 3.71
845 887 0.179134 TTTGCGGTTTTGACAACGGG 60.179 50.000 0.00 0.00 0.00 5.28
848 890 2.222707 GCAAGTTTGCGGTTTTGACAAC 60.223 45.455 0.53 0.00 45.11 3.32
850 892 1.634702 GCAAGTTTGCGGTTTTGACA 58.365 45.000 0.53 0.00 45.11 3.58
865 907 4.347453 GCTGCCGGGTGTTGCAAG 62.347 66.667 2.18 0.00 36.98 4.01
878 920 0.899717 TGATGGGAGGTTTTGGCTGC 60.900 55.000 0.00 0.00 0.00 5.25
880 922 0.251787 GGTGATGGGAGGTTTTGGCT 60.252 55.000 0.00 0.00 0.00 4.75
882 924 0.614697 GGGGTGATGGGAGGTTTTGG 60.615 60.000 0.00 0.00 0.00 3.28
900 942 1.371595 CGGGGTGTTTTATACCGTGG 58.628 55.000 0.00 0.00 39.14 4.94
935 988 0.458370 GAATGATTGTTGCGGTGGCC 60.458 55.000 0.00 0.00 38.85 5.36
942 1002 3.428045 GGTGCTACTGGAATGATTGTTGC 60.428 47.826 0.00 0.00 0.00 4.17
977 1048 2.507471 CTCCTTAGCTGATTGGGAGGTT 59.493 50.000 0.00 0.00 39.67 3.50
978 1049 2.122768 CTCCTTAGCTGATTGGGAGGT 58.877 52.381 0.00 0.00 39.67 3.85
996 1069 4.239203 GAGCGCTGCTGCATGCTC 62.239 66.667 29.04 29.04 42.30 4.26
1064 1141 3.862402 CGACGACGAGGAGGACCG 61.862 72.222 0.00 0.00 42.66 4.79
1069 1146 3.878519 GAGGGCGACGACGAGGAG 61.879 72.222 12.29 0.00 42.66 3.69
1224 1310 1.189752 TCTTGTAGGAGCAGAGGCAG 58.810 55.000 0.00 0.00 44.61 4.85
1341 1427 1.304282 CAGATGTTGGGAGGGTGGG 59.696 63.158 0.00 0.00 0.00 4.61
1444 1542 4.174411 GAGCACATGTATATACGGCTCA 57.826 45.455 26.62 7.71 44.15 4.26
1512 1610 4.415150 AGGGGACATGCGTGGCAG 62.415 66.667 15.16 0.00 43.65 4.85
1514 1612 3.628646 AAGAGGGGACATGCGTGGC 62.629 63.158 11.36 7.14 0.00 5.01
1517 1615 2.671070 CCAAGAGGGGACATGCGT 59.329 61.111 0.00 0.00 0.00 5.24
1518 1616 2.825836 GCCAAGAGGGGACATGCG 60.826 66.667 0.00 0.00 37.04 4.73
1519 1617 1.751927 CTGCCAAGAGGGGACATGC 60.752 63.158 0.00 0.00 37.04 4.06
1520 1618 0.679002 CACTGCCAAGAGGGGACATG 60.679 60.000 0.00 0.00 37.04 3.21
1548 1646 3.064207 AGTAGTGGCAATGTTACACACG 58.936 45.455 0.00 0.00 37.58 4.49
1588 1691 7.661127 TTACAGAAACCACATACACATGTAC 57.339 36.000 0.00 0.00 43.73 2.90
1637 1741 1.293498 CTGGAGTTCTGTCGGTGGG 59.707 63.158 0.00 0.00 0.00 4.61
1684 1788 2.282555 CCGCTAACATGACACGATTGAG 59.717 50.000 0.00 0.00 0.00 3.02
1718 1822 3.550437 AATCTGATCTTTCTCGGGGTG 57.450 47.619 0.00 0.00 0.00 4.61
1719 1823 5.693769 TTTAATCTGATCTTTCTCGGGGT 57.306 39.130 0.00 0.00 0.00 4.95
1720 1824 7.573968 AATTTTAATCTGATCTTTCTCGGGG 57.426 36.000 0.00 0.00 0.00 5.73
1738 1853 9.906660 ATGCTTTGTACTTCGAATGAAATTTTA 57.093 25.926 0.00 0.00 36.07 1.52
1739 1854 8.816640 ATGCTTTGTACTTCGAATGAAATTTT 57.183 26.923 0.00 0.00 36.07 1.82
1743 1858 6.801539 AGATGCTTTGTACTTCGAATGAAA 57.198 33.333 0.00 0.00 32.66 2.69
1789 1915 4.056805 TCCCAGGAGGACAGATGC 57.943 61.111 0.00 0.00 40.93 3.91
1805 1931 5.066505 GCCATTTATACCCCATCAATCGATC 59.933 44.000 0.00 0.00 0.00 3.69
1828 1954 0.902531 TTGTACCTCCAGGCTACAGC 59.097 55.000 0.00 0.00 39.32 4.40
1832 1958 3.715287 TGTACATTGTACCTCCAGGCTA 58.285 45.455 21.20 0.02 39.32 3.93
1837 1963 3.199071 GGTGGATGTACATTGTACCTCCA 59.801 47.826 32.82 32.82 39.03 3.86
1849 1975 2.614829 ATACGGCTTGGTGGATGTAC 57.385 50.000 0.00 0.00 0.00 2.90
1875 2001 1.651987 ACACACTCTTTCACACACCG 58.348 50.000 0.00 0.00 0.00 4.94
1898 2024 7.624549 TGCTAGTGTCTAAGGATCTCATTTTT 58.375 34.615 0.00 0.00 0.00 1.94
1899 2025 7.187824 TGCTAGTGTCTAAGGATCTCATTTT 57.812 36.000 0.00 0.00 0.00 1.82
1900 2026 6.798427 TGCTAGTGTCTAAGGATCTCATTT 57.202 37.500 0.00 0.00 0.00 2.32
1901 2027 6.014669 GGATGCTAGTGTCTAAGGATCTCATT 60.015 42.308 4.25 0.00 39.66 2.57
1902 2028 5.480073 GGATGCTAGTGTCTAAGGATCTCAT 59.520 44.000 4.25 0.00 39.66 2.90
1903 2029 4.830046 GGATGCTAGTGTCTAAGGATCTCA 59.170 45.833 4.25 0.00 39.66 3.27
1904 2030 4.830046 TGGATGCTAGTGTCTAAGGATCTC 59.170 45.833 4.25 0.00 39.66 2.75
1905 2031 4.809193 TGGATGCTAGTGTCTAAGGATCT 58.191 43.478 4.25 0.00 39.66 2.75
1906 2032 4.021544 CCTGGATGCTAGTGTCTAAGGATC 60.022 50.000 0.00 0.00 39.19 3.36
1907 2033 3.900601 CCTGGATGCTAGTGTCTAAGGAT 59.099 47.826 0.00 0.00 0.00 3.24
1908 2034 3.052869 TCCTGGATGCTAGTGTCTAAGGA 60.053 47.826 0.00 12.70 0.00 3.36
1909 2035 3.068873 GTCCTGGATGCTAGTGTCTAAGG 59.931 52.174 0.00 2.81 0.00 2.69
1910 2036 3.701542 TGTCCTGGATGCTAGTGTCTAAG 59.298 47.826 0.00 0.00 0.00 2.18
1911 2037 3.708451 TGTCCTGGATGCTAGTGTCTAA 58.292 45.455 0.00 0.00 0.00 2.10
1912 2038 3.382083 TGTCCTGGATGCTAGTGTCTA 57.618 47.619 0.00 0.00 0.00 2.59
1913 2039 2.238084 TGTCCTGGATGCTAGTGTCT 57.762 50.000 0.00 0.00 0.00 3.41
1914 2040 4.881019 ATATGTCCTGGATGCTAGTGTC 57.119 45.455 0.00 0.00 0.00 3.67
1915 2041 5.636903 AAATATGTCCTGGATGCTAGTGT 57.363 39.130 0.00 0.00 0.00 3.55
1916 2042 6.949352 AAAAATATGTCCTGGATGCTAGTG 57.051 37.500 0.00 0.00 0.00 2.74
1917 2043 9.950496 CTATAAAAATATGTCCTGGATGCTAGT 57.050 33.333 0.00 0.00 0.00 2.57
1920 2046 9.512588 CTTCTATAAAAATATGTCCTGGATGCT 57.487 33.333 0.00 0.00 0.00 3.79
1921 2047 9.507329 TCTTCTATAAAAATATGTCCTGGATGC 57.493 33.333 0.00 0.00 0.00 3.91
1924 2050 9.561069 GCTTCTTCTATAAAAATATGTCCTGGA 57.439 33.333 0.00 0.00 0.00 3.86
1925 2051 8.787852 GGCTTCTTCTATAAAAATATGTCCTGG 58.212 37.037 0.00 0.00 0.00 4.45
1926 2052 8.787852 GGGCTTCTTCTATAAAAATATGTCCTG 58.212 37.037 0.00 0.00 0.00 3.86
1927 2053 8.502738 TGGGCTTCTTCTATAAAAATATGTCCT 58.497 33.333 0.00 0.00 0.00 3.85
1928 2054 8.568794 GTGGGCTTCTTCTATAAAAATATGTCC 58.431 37.037 0.00 0.00 0.00 4.02
1929 2055 8.568794 GGTGGGCTTCTTCTATAAAAATATGTC 58.431 37.037 0.00 0.00 0.00 3.06
1930 2056 7.505923 GGGTGGGCTTCTTCTATAAAAATATGT 59.494 37.037 0.00 0.00 0.00 2.29
1931 2057 7.039714 GGGGTGGGCTTCTTCTATAAAAATATG 60.040 40.741 0.00 0.00 0.00 1.78
1932 2058 7.010771 GGGGTGGGCTTCTTCTATAAAAATAT 58.989 38.462 0.00 0.00 0.00 1.28
1933 2059 6.370453 GGGGTGGGCTTCTTCTATAAAAATA 58.630 40.000 0.00 0.00 0.00 1.40
1934 2060 5.208890 GGGGTGGGCTTCTTCTATAAAAAT 58.791 41.667 0.00 0.00 0.00 1.82
1935 2061 4.606210 GGGGTGGGCTTCTTCTATAAAAA 58.394 43.478 0.00 0.00 0.00 1.94
1936 2062 3.371166 CGGGGTGGGCTTCTTCTATAAAA 60.371 47.826 0.00 0.00 0.00 1.52
1937 2063 2.171870 CGGGGTGGGCTTCTTCTATAAA 59.828 50.000 0.00 0.00 0.00 1.40
1938 2064 1.766496 CGGGGTGGGCTTCTTCTATAA 59.234 52.381 0.00 0.00 0.00 0.98
1939 2065 1.062734 TCGGGGTGGGCTTCTTCTATA 60.063 52.381 0.00 0.00 0.00 1.31
1940 2066 0.326238 TCGGGGTGGGCTTCTTCTAT 60.326 55.000 0.00 0.00 0.00 1.98
1941 2067 0.326238 ATCGGGGTGGGCTTCTTCTA 60.326 55.000 0.00 0.00 0.00 2.10
1942 2068 1.616628 ATCGGGGTGGGCTTCTTCT 60.617 57.895 0.00 0.00 0.00 2.85
1943 2069 1.452108 CATCGGGGTGGGCTTCTTC 60.452 63.158 0.00 0.00 0.00 2.87
1944 2070 1.915078 CTCATCGGGGTGGGCTTCTT 61.915 60.000 0.00 0.00 0.00 2.52
1945 2071 2.285368 TCATCGGGGTGGGCTTCT 60.285 61.111 0.00 0.00 0.00 2.85
1946 2072 1.700042 ATCTCATCGGGGTGGGCTTC 61.700 60.000 0.00 0.00 0.00 3.86
1947 2073 1.694169 ATCTCATCGGGGTGGGCTT 60.694 57.895 0.00 0.00 0.00 4.35
1948 2074 2.040464 ATCTCATCGGGGTGGGCT 60.040 61.111 0.00 0.00 0.00 5.19
1949 2075 2.427753 GATCTCATCGGGGTGGGC 59.572 66.667 0.00 0.00 0.00 5.36
1958 2084 6.582264 GGTAGCGAATTTTTACGATCTCATC 58.418 40.000 0.00 0.00 0.00 2.92
1959 2085 5.175126 CGGTAGCGAATTTTTACGATCTCAT 59.825 40.000 9.07 0.00 0.00 2.90
1960 2086 4.501559 CGGTAGCGAATTTTTACGATCTCA 59.498 41.667 9.07 0.00 0.00 3.27
1961 2087 4.736793 TCGGTAGCGAATTTTTACGATCTC 59.263 41.667 15.73 0.00 0.00 2.75
1962 2088 4.501921 GTCGGTAGCGAATTTTTACGATCT 59.498 41.667 19.94 0.00 0.00 2.75
1963 2089 4.602524 CGTCGGTAGCGAATTTTTACGATC 60.603 45.833 19.94 0.81 0.00 3.69
1964 2090 3.241322 CGTCGGTAGCGAATTTTTACGAT 59.759 43.478 19.94 0.00 0.00 3.73
1965 2091 2.593775 CGTCGGTAGCGAATTTTTACGA 59.406 45.455 19.94 0.00 0.00 3.43
1966 2092 2.284627 CCGTCGGTAGCGAATTTTTACG 60.285 50.000 19.94 16.04 0.00 3.18
1967 2093 2.029606 CCCGTCGGTAGCGAATTTTTAC 59.970 50.000 19.94 4.26 0.00 2.01
1968 2094 2.094286 TCCCGTCGGTAGCGAATTTTTA 60.094 45.455 19.94 0.00 0.00 1.52
1969 2095 1.081094 CCCGTCGGTAGCGAATTTTT 58.919 50.000 19.94 0.00 0.00 1.94
1970 2096 0.247185 TCCCGTCGGTAGCGAATTTT 59.753 50.000 19.94 0.00 0.00 1.82
1971 2097 0.462789 ATCCCGTCGGTAGCGAATTT 59.537 50.000 19.94 0.00 0.00 1.82
1972 2098 0.462789 AATCCCGTCGGTAGCGAATT 59.537 50.000 19.94 12.07 0.00 2.17
1973 2099 0.462789 AAATCCCGTCGGTAGCGAAT 59.537 50.000 19.94 5.98 0.00 3.34
1974 2100 1.102154 TAAATCCCGTCGGTAGCGAA 58.898 50.000 19.94 3.43 0.00 4.70
1975 2101 1.102154 TTAAATCCCGTCGGTAGCGA 58.898 50.000 13.94 13.94 0.00 4.93
1976 2102 1.589779 GTTTAAATCCCGTCGGTAGCG 59.410 52.381 11.06 8.29 0.00 4.26
1977 2103 2.862536 GAGTTTAAATCCCGTCGGTAGC 59.137 50.000 11.06 0.00 0.00 3.58
1978 2104 3.451526 GGAGTTTAAATCCCGTCGGTAG 58.548 50.000 11.06 0.00 0.00 3.18
1979 2105 2.159254 CGGAGTTTAAATCCCGTCGGTA 60.159 50.000 11.06 0.00 37.40 4.02
1980 2106 1.404583 CGGAGTTTAAATCCCGTCGGT 60.405 52.381 11.06 0.00 37.40 4.69
1981 2107 1.283736 CGGAGTTTAAATCCCGTCGG 58.716 55.000 17.73 3.60 37.40 4.79
1982 2108 1.283736 CCGGAGTTTAAATCCCGTCG 58.716 55.000 21.66 10.02 40.30 5.12
1983 2109 2.093816 AGACCGGAGTTTAAATCCCGTC 60.094 50.000 19.61 19.61 42.16 4.79
1984 2110 1.904537 AGACCGGAGTTTAAATCCCGT 59.095 47.619 21.66 5.52 40.30 5.28
1985 2111 2.685850 AGACCGGAGTTTAAATCCCG 57.314 50.000 9.46 18.57 41.47 5.14
1986 2112 4.476628 TGTAGACCGGAGTTTAAATCCC 57.523 45.455 9.46 5.37 32.86 3.85
1987 2113 4.874396 CCTTGTAGACCGGAGTTTAAATCC 59.126 45.833 9.46 0.79 0.00 3.01
1988 2114 5.727434 TCCTTGTAGACCGGAGTTTAAATC 58.273 41.667 9.46 0.00 0.00 2.17
1989 2115 5.750352 TCCTTGTAGACCGGAGTTTAAAT 57.250 39.130 9.46 0.00 0.00 1.40
1990 2116 5.549742 TTCCTTGTAGACCGGAGTTTAAA 57.450 39.130 9.46 0.00 0.00 1.52
1991 2117 5.549742 TTTCCTTGTAGACCGGAGTTTAA 57.450 39.130 9.46 0.00 0.00 1.52
1992 2118 5.750352 ATTTCCTTGTAGACCGGAGTTTA 57.250 39.130 9.46 0.00 0.00 2.01
1993 2119 4.635699 ATTTCCTTGTAGACCGGAGTTT 57.364 40.909 9.46 0.00 0.00 2.66
1994 2120 4.081254 GGTATTTCCTTGTAGACCGGAGTT 60.081 45.833 9.46 0.00 0.00 3.01
1995 2121 3.450096 GGTATTTCCTTGTAGACCGGAGT 59.550 47.826 9.46 0.00 0.00 3.85
1996 2122 3.449737 TGGTATTTCCTTGTAGACCGGAG 59.550 47.826 9.46 0.00 37.07 4.63
1997 2123 3.196254 GTGGTATTTCCTTGTAGACCGGA 59.804 47.826 9.46 0.00 37.07 5.14
1998 2124 3.197116 AGTGGTATTTCCTTGTAGACCGG 59.803 47.826 0.00 0.00 37.07 5.28
1999 2125 4.181578 CAGTGGTATTTCCTTGTAGACCG 58.818 47.826 0.00 0.00 37.07 4.79
2000 2126 4.935808 CACAGTGGTATTTCCTTGTAGACC 59.064 45.833 0.00 0.00 34.65 3.85
2001 2127 5.638234 GTCACAGTGGTATTTCCTTGTAGAC 59.362 44.000 0.00 0.00 34.65 2.59
2002 2128 5.279809 GGTCACAGTGGTATTTCCTTGTAGA 60.280 44.000 0.00 0.00 34.65 2.59
2003 2129 4.935808 GGTCACAGTGGTATTTCCTTGTAG 59.064 45.833 0.00 0.00 34.65 2.74
2004 2130 4.595781 AGGTCACAGTGGTATTTCCTTGTA 59.404 41.667 0.00 0.00 34.65 2.41
2005 2131 3.394606 AGGTCACAGTGGTATTTCCTTGT 59.605 43.478 0.00 0.00 35.98 3.16
2006 2132 4.021102 AGGTCACAGTGGTATTTCCTTG 57.979 45.455 0.00 0.00 37.07 3.61
2007 2133 4.398319 CAAGGTCACAGTGGTATTTCCTT 58.602 43.478 0.00 3.56 37.07 3.36
2008 2134 3.810743 GCAAGGTCACAGTGGTATTTCCT 60.811 47.826 0.00 0.00 37.07 3.36
2009 2135 2.488153 GCAAGGTCACAGTGGTATTTCC 59.512 50.000 0.00 0.00 0.00 3.13
2010 2136 2.488153 GGCAAGGTCACAGTGGTATTTC 59.512 50.000 0.00 0.00 0.00 2.17
2011 2137 2.158534 TGGCAAGGTCACAGTGGTATTT 60.159 45.455 0.00 0.00 0.00 1.40
2012 2138 1.423541 TGGCAAGGTCACAGTGGTATT 59.576 47.619 0.00 0.00 0.00 1.89
2013 2139 1.064003 TGGCAAGGTCACAGTGGTAT 58.936 50.000 0.00 0.00 0.00 2.73
2014 2140 0.107831 GTGGCAAGGTCACAGTGGTA 59.892 55.000 0.00 0.00 38.14 3.25
2015 2141 1.152963 GTGGCAAGGTCACAGTGGT 60.153 57.895 0.00 0.00 38.14 4.16
2016 2142 1.149174 AGTGGCAAGGTCACAGTGG 59.851 57.895 0.00 0.00 41.04 4.00
2017 2143 1.168407 CCAGTGGCAAGGTCACAGTG 61.168 60.000 0.00 0.00 41.04 3.66
2018 2144 1.149174 CCAGTGGCAAGGTCACAGT 59.851 57.895 0.00 0.00 41.04 3.55
2019 2145 1.601759 CCCAGTGGCAAGGTCACAG 60.602 63.158 2.61 0.00 41.04 3.66
2020 2146 2.515398 CCCAGTGGCAAGGTCACA 59.485 61.111 2.61 0.00 41.04 3.58
2030 2156 3.066190 CACATGGCAGCCCAGTGG 61.066 66.667 20.54 0.63 46.24 4.00
2031 2157 1.180456 TTTCACATGGCAGCCCAGTG 61.180 55.000 21.72 21.72 46.24 3.66
2032 2158 0.896940 CTTTCACATGGCAGCCCAGT 60.897 55.000 9.64 4.26 46.24 4.00
2033 2159 0.609957 TCTTTCACATGGCAGCCCAG 60.610 55.000 9.64 3.50 46.24 4.45
2035 2161 0.610232 ACTCTTTCACATGGCAGCCC 60.610 55.000 9.64 0.00 0.00 5.19
2036 2162 0.524862 CACTCTTTCACATGGCAGCC 59.475 55.000 3.66 3.66 0.00 4.85
2037 2163 1.068748 CACACTCTTTCACATGGCAGC 60.069 52.381 0.00 0.00 0.00 5.25
2038 2164 2.224606 ACACACTCTTTCACATGGCAG 58.775 47.619 0.00 0.00 0.00 4.85
2039 2165 2.346766 ACACACTCTTTCACATGGCA 57.653 45.000 0.00 0.00 0.00 4.92
2040 2166 2.618241 TCAACACACTCTTTCACATGGC 59.382 45.455 0.00 0.00 0.00 4.40
2041 2167 3.303329 CGTCAACACACTCTTTCACATGG 60.303 47.826 0.00 0.00 0.00 3.66
2042 2168 3.846023 GCGTCAACACACTCTTTCACATG 60.846 47.826 0.00 0.00 0.00 3.21
2043 2169 2.287915 GCGTCAACACACTCTTTCACAT 59.712 45.455 0.00 0.00 0.00 3.21
2044 2170 1.663643 GCGTCAACACACTCTTTCACA 59.336 47.619 0.00 0.00 0.00 3.58
2045 2171 1.332028 CGCGTCAACACACTCTTTCAC 60.332 52.381 0.00 0.00 0.00 3.18
2046 2172 0.927537 CGCGTCAACACACTCTTTCA 59.072 50.000 0.00 0.00 0.00 2.69
2047 2173 0.928229 ACGCGTCAACACACTCTTTC 59.072 50.000 5.58 0.00 0.00 2.62
2048 2174 0.650512 CACGCGTCAACACACTCTTT 59.349 50.000 9.86 0.00 0.00 2.52
2049 2175 0.459585 ACACGCGTCAACACACTCTT 60.460 50.000 9.86 0.00 0.00 2.85
2050 2176 0.870307 GACACGCGTCAACACACTCT 60.870 55.000 9.86 0.00 42.13 3.24
2051 2177 1.558383 GACACGCGTCAACACACTC 59.442 57.895 9.86 0.00 42.13 3.51
2052 2178 2.228241 CGACACGCGTCAACACACT 61.228 57.895 9.86 0.00 42.74 3.55
2053 2179 2.241537 CGACACGCGTCAACACAC 59.758 61.111 9.86 0.00 42.74 3.82
2054 2180 3.622362 GCGACACGCGTCAACACA 61.622 61.111 9.86 0.00 44.55 3.72
2112 2240 6.095432 ACAGCAATGTTATACCTGCAAAAA 57.905 33.333 0.00 0.00 37.26 1.94
2113 2241 5.720371 ACAGCAATGTTATACCTGCAAAA 57.280 34.783 0.00 0.00 37.26 2.44
2114 2242 5.468592 CAACAGCAATGTTATACCTGCAAA 58.531 37.500 0.00 0.00 37.26 3.68
2115 2243 4.617995 GCAACAGCAATGTTATACCTGCAA 60.618 41.667 0.00 0.00 37.26 4.08
2116 2244 3.119531 GCAACAGCAATGTTATACCTGCA 60.120 43.478 0.00 0.00 37.26 4.41
2117 2245 3.129287 AGCAACAGCAATGTTATACCTGC 59.871 43.478 0.00 0.00 34.96 4.85
2118 2246 4.439153 CCAGCAACAGCAATGTTATACCTG 60.439 45.833 0.00 0.00 0.00 4.00
2119 2247 3.696051 CCAGCAACAGCAATGTTATACCT 59.304 43.478 0.00 0.00 0.00 3.08
2120 2248 3.443681 ACCAGCAACAGCAATGTTATACC 59.556 43.478 0.00 0.00 0.00 2.73
2121 2249 4.414852 CACCAGCAACAGCAATGTTATAC 58.585 43.478 0.00 0.00 0.00 1.47
2122 2250 3.443329 CCACCAGCAACAGCAATGTTATA 59.557 43.478 0.00 0.00 0.00 0.98
2123 2251 2.231964 CCACCAGCAACAGCAATGTTAT 59.768 45.455 0.00 0.00 0.00 1.89
2124 2252 1.612950 CCACCAGCAACAGCAATGTTA 59.387 47.619 0.00 0.00 0.00 2.41
2125 2253 0.390124 CCACCAGCAACAGCAATGTT 59.610 50.000 0.00 0.00 0.00 2.71
2126 2254 2.043625 CCACCAGCAACAGCAATGT 58.956 52.632 0.00 0.00 0.00 2.71
2127 2255 1.373748 GCCACCAGCAACAGCAATG 60.374 57.895 0.00 0.00 42.97 2.82
2128 2256 3.053828 GCCACCAGCAACAGCAAT 58.946 55.556 0.00 0.00 42.97 3.56
2137 2265 0.459489 TTTGAACAAGTGCCACCAGC 59.541 50.000 0.00 0.00 44.14 4.85
2138 2266 2.101249 ACATTTGAACAAGTGCCACCAG 59.899 45.455 9.35 0.00 32.11 4.00
2139 2267 2.106566 ACATTTGAACAAGTGCCACCA 58.893 42.857 9.35 0.00 32.11 4.17
2140 2268 2.159114 ACACATTTGAACAAGTGCCACC 60.159 45.455 9.35 0.00 35.47 4.61
2214 2342 4.262292 GCACGTATGGATGATAACCAGGTA 60.262 45.833 0.00 0.00 40.89 3.08
2215 2343 3.494398 GCACGTATGGATGATAACCAGGT 60.494 47.826 0.00 0.00 40.89 4.00
2217 2345 2.731451 CGCACGTATGGATGATAACCAG 59.269 50.000 0.00 0.00 40.89 4.00
2218 2346 2.362717 TCGCACGTATGGATGATAACCA 59.637 45.455 0.00 0.00 41.83 3.67
2219 2347 2.729882 GTCGCACGTATGGATGATAACC 59.270 50.000 0.00 0.00 0.00 2.85
2220 2348 3.377439 TGTCGCACGTATGGATGATAAC 58.623 45.455 0.00 0.00 0.00 1.89
2221 2349 3.719173 TGTCGCACGTATGGATGATAA 57.281 42.857 0.00 0.00 0.00 1.75
2222 2350 3.067601 ACTTGTCGCACGTATGGATGATA 59.932 43.478 0.00 0.00 0.00 2.15
2223 2351 2.159099 ACTTGTCGCACGTATGGATGAT 60.159 45.455 0.00 0.00 0.00 2.45
2224 2352 1.203758 ACTTGTCGCACGTATGGATGA 59.796 47.619 0.00 0.00 0.00 2.92
2225 2353 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
2229 2357 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
2230 2358 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
2231 2359 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
2232 2360 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
2233 2361 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
2234 2362 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
2235 2363 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2236 2364 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
2237 2365 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
2238 2366 3.841643 TCTCCGTTCCGAATTACTTGTC 58.158 45.455 0.00 0.00 0.00 3.18
2239 2367 3.947910 TCTCCGTTCCGAATTACTTGT 57.052 42.857 0.00 0.00 0.00 3.16
2240 2368 4.689345 ACTTTCTCCGTTCCGAATTACTTG 59.311 41.667 0.00 0.00 0.00 3.16
2241 2369 4.891260 ACTTTCTCCGTTCCGAATTACTT 58.109 39.130 0.00 0.00 0.00 2.24
2242 2370 4.532314 ACTTTCTCCGTTCCGAATTACT 57.468 40.909 0.00 0.00 0.00 2.24
2243 2371 9.852091 ATATATACTTTCTCCGTTCCGAATTAC 57.148 33.333 0.00 0.00 0.00 1.89
2245 2373 9.774413 AAATATATACTTTCTCCGTTCCGAATT 57.226 29.630 0.00 0.00 0.00 2.17
2246 2374 9.420551 GAAATATATACTTTCTCCGTTCCGAAT 57.579 33.333 8.93 0.00 31.38 3.34
2247 2375 7.592533 CGAAATATATACTTTCTCCGTTCCGAA 59.407 37.037 12.08 0.00 31.79 4.30
2248 2376 7.080099 CGAAATATATACTTTCTCCGTTCCGA 58.920 38.462 12.08 0.00 31.79 4.55
2249 2377 6.307318 CCGAAATATATACTTTCTCCGTTCCG 59.693 42.308 12.08 0.00 31.79 4.30
2250 2378 6.589139 CCCGAAATATATACTTTCTCCGTTCC 59.411 42.308 12.08 0.00 31.79 3.62
2251 2379 6.090493 GCCCGAAATATATACTTTCTCCGTTC 59.910 42.308 12.08 0.00 31.79 3.95
2252 2380 5.930569 GCCCGAAATATATACTTTCTCCGTT 59.069 40.000 12.08 0.00 31.79 4.44
2253 2381 5.476614 GCCCGAAATATATACTTTCTCCGT 58.523 41.667 12.08 0.00 31.79 4.69
2254 2382 4.868734 GGCCCGAAATATATACTTTCTCCG 59.131 45.833 0.00 0.00 31.79 4.63
2255 2383 4.868734 CGGCCCGAAATATATACTTTCTCC 59.131 45.833 0.00 10.06 31.79 3.71
2256 2384 4.868734 CCGGCCCGAAATATATACTTTCTC 59.131 45.833 3.71 5.44 31.79 2.87
2257 2385 4.323257 CCCGGCCCGAAATATATACTTTCT 60.323 45.833 3.71 0.00 31.79 2.52
2258 2386 3.937079 CCCGGCCCGAAATATATACTTTC 59.063 47.826 3.71 0.00 0.00 2.62
2259 2387 3.328637 ACCCGGCCCGAAATATATACTTT 59.671 43.478 3.71 0.00 0.00 2.66
2260 2388 2.908351 ACCCGGCCCGAAATATATACTT 59.092 45.455 3.71 0.00 0.00 2.24
2261 2389 2.543635 ACCCGGCCCGAAATATATACT 58.456 47.619 3.71 0.00 0.00 2.12
2262 2390 3.339253 AACCCGGCCCGAAATATATAC 57.661 47.619 3.71 0.00 0.00 1.47
2291 2419 5.304101 AGGATAAGATAGCTGGAGTTCTGTG 59.696 44.000 0.00 0.00 0.00 3.66
2298 2426 5.069648 TGTTGTGAGGATAAGATAGCTGGAG 59.930 44.000 0.00 0.00 0.00 3.86
2306 2434 4.383552 GGAGCACTGTTGTGAGGATAAGAT 60.384 45.833 0.00 0.00 46.55 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.