Multiple sequence alignment - TraesCS5A01G493800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G493800 chr5A 100.000 5336 0 0 1 5336 662532374 662527039 0.000000e+00 9854.0
1 TraesCS5A01G493800 chr4D 93.514 1881 89 18 2640 4502 480880815 480882680 0.000000e+00 2767.0
2 TraesCS5A01G493800 chr4D 89.059 1965 132 36 670 2609 480878905 480880811 0.000000e+00 2361.0
3 TraesCS5A01G493800 chr4D 86.503 652 58 17 6 644 480878274 480878908 0.000000e+00 689.0
4 TraesCS5A01G493800 chr4D 76.096 502 67 32 4536 5015 480883015 480883485 4.190000e-51 213.0
5 TraesCS5A01G493800 chr4D 85.263 95 14 0 14 108 503566815 503566909 1.220000e-16 99.0
6 TraesCS5A01G493800 chr4B 88.497 1956 133 58 12 1926 608965722 608967626 0.000000e+00 2281.0
7 TraesCS5A01G493800 chr4B 91.703 1627 92 17 3211 4802 608969279 608970897 0.000000e+00 2217.0
8 TraesCS5A01G493800 chr4B 87.661 932 80 14 1994 2920 608967728 608968629 0.000000e+00 1051.0
9 TraesCS5A01G493800 chr4B 95.789 190 6 1 3027 3214 608968969 608969158 6.710000e-79 305.0
10 TraesCS5A01G493800 chr4B 95.327 107 5 0 2919 3025 608968743 608968849 2.560000e-38 171.0
11 TraesCS5A01G493800 chr4B 83.117 154 10 6 4875 5013 608971177 608971329 5.610000e-25 126.0
12 TraesCS5A01G493800 chr4B 93.103 58 0 3 4812 4865 608971090 608971147 1.230000e-11 82.4
13 TraesCS5A01G493800 chr2A 91.080 213 16 2 6 218 313211200 313210991 8.750000e-73 285.0
14 TraesCS5A01G493800 chr7A 89.202 213 20 2 6 218 692043211 692043420 4.100000e-66 263.0
15 TraesCS5A01G493800 chr7A 96.296 54 1 1 5283 5335 105311885 105311938 2.650000e-13 87.9
16 TraesCS5A01G493800 chr4A 88.073 218 24 1 6 223 581758015 581757800 1.910000e-64 257.0
17 TraesCS5A01G493800 chr4A 96.078 51 1 1 5284 5334 492102548 492102499 1.230000e-11 82.4
18 TraesCS5A01G493800 chr3D 89.119 193 16 1 5140 5332 438056907 438057094 8.930000e-58 235.0
19 TraesCS5A01G493800 chr3D 87.234 141 13 1 5137 5277 421287401 421287536 7.160000e-34 156.0
20 TraesCS5A01G493800 chr3B 80.695 259 28 10 4555 4802 717561137 717560890 1.180000e-41 182.0
21 TraesCS5A01G493800 chr3B 77.083 192 31 9 14 203 771972784 771972604 1.220000e-16 99.0
22 TraesCS5A01G493800 chr3B 78.400 125 27 0 12 136 592855892 592856016 1.230000e-11 82.4
23 TraesCS5A01G493800 chr5B 80.309 259 29 10 4555 4802 42874090 42873843 5.490000e-40 176.0
24 TraesCS5A01G493800 chr5B 93.220 59 3 1 5275 5332 262533802 262533744 9.520000e-13 86.1
25 TraesCS5A01G493800 chr1A 84.167 120 19 0 1586 1705 465454634 465454515 3.380000e-22 117.0
26 TraesCS5A01G493800 chr1A 86.585 82 11 0 27 108 117979153 117979234 2.050000e-14 91.6
27 TraesCS5A01G493800 chr1A 93.333 60 2 2 5273 5331 516378669 516378727 2.650000e-13 87.9
28 TraesCS5A01G493800 chr1B 83.607 122 20 0 1584 1705 491040850 491040729 1.210000e-21 115.0
29 TraesCS5A01G493800 chr1D 83.471 121 20 0 1585 1705 366723829 366723949 4.370000e-21 113.0
30 TraesCS5A01G493800 chr6D 86.139 101 12 2 6 105 13908969 13909068 2.030000e-19 108.0
31 TraesCS5A01G493800 chr6A 86.364 88 12 0 21 108 23592798 23592885 4.400000e-16 97.1
32 TraesCS5A01G493800 chr5D 98.077 52 0 1 5283 5334 391977192 391977242 7.360000e-14 89.8
33 TraesCS5A01G493800 chr5D 94.444 54 3 0 5280 5333 114623970 114623917 3.420000e-12 84.2
34 TraesCS5A01G493800 chr3A 87.500 72 5 4 5267 5335 64291132 64291062 4.430000e-11 80.5
35 TraesCS5A01G493800 chr7B 88.235 68 5 3 5269 5334 417553383 417553317 1.590000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G493800 chr5A 662527039 662532374 5335 True 9854.000000 9854 100.000000 1 5336 1 chr5A.!!$R1 5335
1 TraesCS5A01G493800 chr4D 480878274 480883485 5211 False 1507.500000 2767 86.293000 6 5015 4 chr4D.!!$F2 5009
2 TraesCS5A01G493800 chr4B 608965722 608971329 5607 False 890.485714 2281 90.742429 12 5013 7 chr4B.!!$F1 5001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 921 0.965363 CCCCAAACCAATCTCCCGTG 60.965 60.0 0.0 0.0 0.00 4.94 F
2394 2514 0.117541 TGGAGGGTGCCTACAGGTAA 59.882 55.0 0.0 0.0 39.99 2.85 F
2524 2645 0.462581 TCGATCAGTGGCTTCATGGC 60.463 55.0 0.0 0.0 42.18 4.40 F
2536 2657 0.623194 TTCATGGCGAGATTGGGGAA 59.377 50.0 0.0 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2524 2645 0.105778 GGCTCTCTTCCCCAATCTCG 59.894 60.0 0.0 0.0 0.00 4.04 R
3599 4087 0.326927 AGGTTCCCATAACACGGGTG 59.673 55.0 0.0 0.0 44.81 4.61 R
4281 4781 0.399091 TCCCATCCTCCATCGAGCTT 60.399 55.0 0.0 0.0 34.49 3.74 R
4347 4847 0.732880 CGGCATCGTCGTTCTTCTGT 60.733 55.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.390603 CCGAATAATCTTGACCGTCAAACA 59.609 41.667 14.74 5.38 35.73 2.83
42 43 3.550030 CCGTCAAACAAGGTCAATCCAAC 60.550 47.826 0.00 0.00 39.02 3.77
43 44 3.066064 CGTCAAACAAGGTCAATCCAACA 59.934 43.478 0.00 0.00 39.02 3.33
88 90 1.535462 ACTCAACATGTTTAGCGTGCC 59.465 47.619 17.72 0.00 37.62 5.01
100 102 7.971183 TGTTTAGCGTGCCATTAATATCATA 57.029 32.000 0.00 0.00 0.00 2.15
108 110 8.240682 GCGTGCCATTAATATCATACCAAATAA 58.759 33.333 0.00 0.00 0.00 1.40
146 149 9.715123 TTAATCACATAATTAACATGCAAGACG 57.285 29.630 0.00 0.00 0.00 4.18
147 150 6.976636 TCACATAATTAACATGCAAGACGA 57.023 33.333 0.00 0.00 0.00 4.20
148 151 7.552458 TCACATAATTAACATGCAAGACGAT 57.448 32.000 0.00 0.00 0.00 3.73
151 154 9.533983 CACATAATTAACATGCAAGACGATATC 57.466 33.333 0.00 0.00 0.00 1.63
153 156 8.720562 CATAATTAACATGCAAGACGATATCCA 58.279 33.333 0.00 0.00 0.00 3.41
160 163 3.068165 TGCAAGACGATATCCACTACCTG 59.932 47.826 0.00 0.00 0.00 4.00
169 172 5.652452 CGATATCCACTACCTGATATCCACA 59.348 44.000 11.77 0.00 43.40 4.17
170 173 6.404844 CGATATCCACTACCTGATATCCACAC 60.405 46.154 11.77 0.00 43.40 3.82
174 177 2.362397 ACTACCTGATATCCACACGCAG 59.638 50.000 0.00 0.00 0.00 5.18
186 189 5.333299 TCCACACGCAGTTAATATACTGT 57.667 39.130 7.34 0.00 45.76 3.55
220 228 4.693538 TGCATTGCACGTACACATTTAT 57.306 36.364 7.38 0.00 31.71 1.40
222 230 4.855937 TGCATTGCACGTACACATTTATTG 59.144 37.500 7.38 0.00 31.71 1.90
223 231 5.092105 GCATTGCACGTACACATTTATTGA 58.908 37.500 3.15 0.00 0.00 2.57
342 351 4.799564 ACAATTTTGGAACGTATGGCAT 57.200 36.364 4.88 4.88 0.00 4.40
366 375 2.745968 ACCACCAACCAACACAAATCT 58.254 42.857 0.00 0.00 0.00 2.40
400 409 5.408079 AAAGATCCCACCACCATATTGAT 57.592 39.130 0.00 0.00 0.00 2.57
432 441 5.645497 GGTGATAAAGCACACTCTTTGATCT 59.355 40.000 0.33 0.00 40.52 2.75
496 505 3.911868 TGCAAAAGGTGATTACATGCAC 58.088 40.909 0.00 0.00 0.00 4.57
500 509 2.042686 AGGTGATTACATGCACGCAT 57.957 45.000 0.00 0.00 35.91 4.73
504 513 3.064682 GGTGATTACATGCACGCATAACA 59.935 43.478 3.80 0.00 35.91 2.41
506 515 5.049749 GGTGATTACATGCACGCATAACATA 60.050 40.000 3.80 0.00 35.91 2.29
507 516 5.845953 GTGATTACATGCACGCATAACATAC 59.154 40.000 3.80 0.00 34.91 2.39
544 560 9.003658 ACTATCATTGACAAAAGTTGAACTAGG 57.996 33.333 0.00 0.00 0.00 3.02
550 569 5.989777 TGACAAAAGTTGAACTAGGAGTAGC 59.010 40.000 0.00 0.00 0.00 3.58
559 578 8.634444 AGTTGAACTAGGAGTAGCACATAATAG 58.366 37.037 0.00 0.00 0.00 1.73
624 647 3.069443 TGGCTTTCACACATTCTTTTCCC 59.931 43.478 0.00 0.00 0.00 3.97
659 682 8.707796 ATGAAATAAATCTCATTCTCATGGCT 57.292 30.769 0.00 0.00 0.00 4.75
660 683 8.162878 TGAAATAAATCTCATTCTCATGGCTC 57.837 34.615 0.00 0.00 0.00 4.70
661 684 7.230108 TGAAATAAATCTCATTCTCATGGCTCC 59.770 37.037 0.00 0.00 0.00 4.70
662 685 3.505480 AATCTCATTCTCATGGCTCCC 57.495 47.619 0.00 0.00 0.00 4.30
663 686 1.883678 TCTCATTCTCATGGCTCCCA 58.116 50.000 0.00 0.00 38.19 4.37
664 687 1.487976 TCTCATTCTCATGGCTCCCAC 59.512 52.381 0.00 0.00 35.80 4.61
665 688 1.211212 CTCATTCTCATGGCTCCCACA 59.789 52.381 0.00 0.00 35.80 4.17
666 689 1.848388 TCATTCTCATGGCTCCCACAT 59.152 47.619 0.00 0.00 35.80 3.21
674 697 3.768757 TCATGGCTCCCACATTTTAAAGG 59.231 43.478 0.00 0.00 35.80 3.11
756 779 4.351054 CCCTGGGTCCACAGCCAC 62.351 72.222 3.97 0.00 45.73 5.01
776 799 3.061848 GGGCCCACGTGTCATTGG 61.062 66.667 19.95 9.13 0.00 3.16
781 804 1.963855 CCACGTGTCATTGGGCGAA 60.964 57.895 15.65 0.00 0.00 4.70
898 921 0.965363 CCCCAAACCAATCTCCCGTG 60.965 60.000 0.00 0.00 0.00 4.94
956 979 2.125350 CCTCCCAAGCGACTCTGC 60.125 66.667 0.00 0.00 0.00 4.26
963 986 3.376935 AAGCGACTCTGCCCCATCG 62.377 63.158 0.00 0.00 37.63 3.84
965 988 2.202797 CGACTCTGCCCCATCGTG 60.203 66.667 0.00 0.00 0.00 4.35
966 989 2.187946 GACTCTGCCCCATCGTGG 59.812 66.667 0.00 0.00 37.25 4.94
967 990 2.607750 ACTCTGCCCCATCGTGGT 60.608 61.111 3.82 0.00 35.17 4.16
972 995 4.077184 GCCCCATCGTGGTCGTCA 62.077 66.667 3.82 0.00 35.17 4.35
973 996 2.184322 CCCCATCGTGGTCGTCAG 59.816 66.667 3.82 0.00 35.17 3.51
975 998 2.261361 CCATCGTGGTCGTCAGCA 59.739 61.111 0.00 0.00 38.33 4.41
976 999 1.807165 CCATCGTGGTCGTCAGCAG 60.807 63.158 0.00 0.00 38.33 4.24
978 1001 2.931068 ATCGTGGTCGTCAGCAGCA 61.931 57.895 0.00 0.00 38.33 4.41
979 1002 2.825726 ATCGTGGTCGTCAGCAGCAG 62.826 60.000 0.00 0.00 38.33 4.24
1194 1226 3.558411 GCCATCGTGCTCGTGCTC 61.558 66.667 11.19 6.24 40.48 4.26
1294 1329 2.979197 CTCAAGCAGCAGCAGCACC 61.979 63.158 12.92 0.00 45.49 5.01
1305 1340 3.362797 CAGCACCTGCAGCACCAG 61.363 66.667 8.66 0.00 45.16 4.00
1701 1745 2.509422 GGGGGCTACGGGATTGTC 59.491 66.667 0.00 0.00 0.00 3.18
1782 1826 3.005578 GGTAACCTCGTGACCTCATATCC 59.994 52.174 0.00 0.00 34.30 2.59
1789 1833 2.100916 CGTGACCTCATATCCCGAAAGT 59.899 50.000 0.00 0.00 0.00 2.66
1793 1837 4.469945 TGACCTCATATCCCGAAAGTTTCT 59.530 41.667 13.56 0.00 0.00 2.52
1796 1840 3.194861 TCATATCCCGAAAGTTTCTGCG 58.805 45.455 13.56 1.37 0.00 5.18
1798 1842 1.156736 ATCCCGAAAGTTTCTGCGTG 58.843 50.000 13.56 0.00 0.00 5.34
1801 1845 1.064952 CCCGAAAGTTTCTGCGTGTTT 59.935 47.619 13.56 0.00 0.00 2.83
1802 1846 2.288458 CCCGAAAGTTTCTGCGTGTTTA 59.712 45.455 13.56 0.00 0.00 2.01
1829 1874 5.241506 TCCTTTGAGCTGTTCGATTTGAATT 59.758 36.000 0.00 0.00 39.21 2.17
1831 1876 5.687770 TTGAGCTGTTCGATTTGAATTGA 57.312 34.783 0.00 0.00 39.21 2.57
1836 1881 6.449698 AGCTGTTCGATTTGAATTGAAACAT 58.550 32.000 7.74 0.00 39.75 2.71
1849 1894 5.767816 ATTGAAACATAAATCCCCTACGC 57.232 39.130 0.00 0.00 0.00 4.42
1852 1897 5.258051 TGAAACATAAATCCCCTACGCTTT 58.742 37.500 0.00 0.00 0.00 3.51
1860 1905 1.154205 CCCCTACGCTTTGATGCTCG 61.154 60.000 0.00 0.00 0.00 5.03
1861 1906 0.179111 CCCTACGCTTTGATGCTCGA 60.179 55.000 0.00 0.00 0.00 4.04
1862 1907 1.640428 CCTACGCTTTGATGCTCGAA 58.360 50.000 0.00 0.00 0.00 3.71
1866 1911 2.076100 ACGCTTTGATGCTCGAATGAA 58.924 42.857 0.00 0.00 0.00 2.57
1867 1912 2.679837 ACGCTTTGATGCTCGAATGAAT 59.320 40.909 0.00 0.00 0.00 2.57
1868 1913 3.242543 ACGCTTTGATGCTCGAATGAATC 60.243 43.478 0.00 0.00 0.00 2.52
1870 1915 3.549625 GCTTTGATGCTCGAATGAATCCC 60.550 47.826 0.00 0.00 0.00 3.85
1872 1917 1.770658 TGATGCTCGAATGAATCCCCT 59.229 47.619 0.00 0.00 0.00 4.79
1874 1919 2.910688 TGCTCGAATGAATCCCCTAC 57.089 50.000 0.00 0.00 0.00 3.18
1893 1943 5.301805 CCCTACAATTTCTGTGTTTTGGTCT 59.698 40.000 0.00 0.00 39.20 3.85
1894 1944 6.438763 CCTACAATTTCTGTGTTTTGGTCTC 58.561 40.000 0.00 0.00 39.20 3.36
1895 1945 5.262588 ACAATTTCTGTGTTTTGGTCTCC 57.737 39.130 0.00 0.00 36.69 3.71
1896 1946 4.099419 ACAATTTCTGTGTTTTGGTCTCCC 59.901 41.667 0.00 0.00 36.69 4.30
1897 1947 2.358322 TTCTGTGTTTTGGTCTCCCC 57.642 50.000 0.00 0.00 0.00 4.81
1902 1952 2.983192 TGTGTTTTGGTCTCCCCTCATA 59.017 45.455 0.00 0.00 0.00 2.15
1907 1957 6.014584 GTGTTTTGGTCTCCCCTCATAAAAAT 60.015 38.462 0.00 0.00 0.00 1.82
1908 1958 6.014669 TGTTTTGGTCTCCCCTCATAAAAATG 60.015 38.462 0.00 0.00 0.00 2.32
1926 1976 0.178767 TGAATCCATCGGCCAGAGTG 59.821 55.000 2.24 0.00 0.00 3.51
1927 1977 0.465705 GAATCCATCGGCCAGAGTGA 59.534 55.000 2.24 2.66 0.00 3.41
1928 1978 0.911769 AATCCATCGGCCAGAGTGAA 59.088 50.000 2.24 0.00 0.00 3.18
1929 1979 1.135094 ATCCATCGGCCAGAGTGAAT 58.865 50.000 2.24 0.00 0.00 2.57
1930 1980 0.911769 TCCATCGGCCAGAGTGAATT 59.088 50.000 2.24 0.00 0.00 2.17
1931 1981 1.134401 TCCATCGGCCAGAGTGAATTC 60.134 52.381 2.24 0.00 0.00 2.17
1932 1982 1.303309 CATCGGCCAGAGTGAATTCC 58.697 55.000 2.24 0.00 0.00 3.01
1933 1983 1.134280 CATCGGCCAGAGTGAATTCCT 60.134 52.381 2.24 0.00 0.00 3.36
1934 1984 0.537188 TCGGCCAGAGTGAATTCCTC 59.463 55.000 2.24 13.20 0.00 3.71
1935 1985 0.539051 CGGCCAGAGTGAATTCCTCT 59.461 55.000 16.35 16.35 39.87 3.69
1936 1986 1.065854 CGGCCAGAGTGAATTCCTCTT 60.066 52.381 18.41 6.80 37.18 2.85
1937 1987 2.363683 GGCCAGAGTGAATTCCTCTTG 58.636 52.381 18.41 16.65 37.18 3.02
1938 1988 1.742268 GCCAGAGTGAATTCCTCTTGC 59.258 52.381 22.42 22.42 39.56 4.01
1939 1989 2.617532 GCCAGAGTGAATTCCTCTTGCT 60.618 50.000 25.88 10.56 41.84 3.91
1940 1990 3.008330 CCAGAGTGAATTCCTCTTGCTG 58.992 50.000 18.41 12.95 37.18 4.41
1941 1991 2.419324 CAGAGTGAATTCCTCTTGCTGC 59.581 50.000 18.41 0.00 37.18 5.25
1942 1992 1.396301 GAGTGAATTCCTCTTGCTGCG 59.604 52.381 13.60 0.00 0.00 5.18
1943 1993 1.160137 GTGAATTCCTCTTGCTGCGT 58.840 50.000 2.27 0.00 0.00 5.24
1944 1994 1.135859 GTGAATTCCTCTTGCTGCGTG 60.136 52.381 2.27 0.00 0.00 5.34
1963 2013 3.993736 CGTGATTTGATTTGGGGGAAAAC 59.006 43.478 0.00 0.00 0.00 2.43
1988 2066 5.859205 ATCTTTCAAGCAAATACCCATCC 57.141 39.130 0.00 0.00 0.00 3.51
1993 2071 3.091545 CAAGCAAATACCCATCCACTGT 58.908 45.455 0.00 0.00 0.00 3.55
1998 2076 4.220602 GCAAATACCCATCCACTGTCTTTT 59.779 41.667 0.00 0.00 0.00 2.27
1999 2077 5.713025 CAAATACCCATCCACTGTCTTTTG 58.287 41.667 0.00 0.00 0.00 2.44
2001 2079 0.890683 CCCATCCACTGTCTTTTGCC 59.109 55.000 0.00 0.00 0.00 4.52
2002 2080 1.548582 CCCATCCACTGTCTTTTGCCT 60.549 52.381 0.00 0.00 0.00 4.75
2006 2084 3.228188 TCCACTGTCTTTTGCCTTGAT 57.772 42.857 0.00 0.00 0.00 2.57
2015 2093 4.279420 GTCTTTTGCCTTGATCTTGTTCCT 59.721 41.667 0.00 0.00 0.00 3.36
2044 2147 7.475771 TTTCATGAAATTGTTGTGCTTTACC 57.524 32.000 16.91 0.00 0.00 2.85
2050 2153 4.685169 ATTGTTGTGCTTTACCGATGAG 57.315 40.909 0.00 0.00 0.00 2.90
2081 2184 6.658816 GGATTGTGGGGCTCAATAAAAATTTT 59.341 34.615 0.00 0.00 35.94 1.82
2082 2185 7.148255 GGATTGTGGGGCTCAATAAAAATTTTC 60.148 37.037 3.41 0.00 35.94 2.29
2085 2188 7.056635 TGTGGGGCTCAATAAAAATTTTCAAA 58.943 30.769 3.41 0.00 0.00 2.69
2087 2190 8.236586 GTGGGGCTCAATAAAAATTTTCAAATC 58.763 33.333 3.41 0.00 0.00 2.17
2088 2191 7.941238 TGGGGCTCAATAAAAATTTTCAAATCA 59.059 29.630 3.41 0.00 0.00 2.57
2089 2192 8.236586 GGGGCTCAATAAAAATTTTCAAATCAC 58.763 33.333 3.41 0.00 0.00 3.06
2090 2193 8.236586 GGGCTCAATAAAAATTTTCAAATCACC 58.763 33.333 3.41 2.37 0.00 4.02
2092 2195 9.815936 GCTCAATAAAAATTTTCAAATCACCTG 57.184 29.630 3.41 0.00 0.00 4.00
2096 2199 6.843069 AAAAATTTTCAAATCACCTGTCCG 57.157 33.333 3.41 0.00 0.00 4.79
2097 2200 4.519540 AATTTTCAAATCACCTGTCCGG 57.480 40.909 0.00 0.00 39.35 5.14
2116 2219 2.611292 CGGCATCATTCACTCTCTTTCC 59.389 50.000 0.00 0.00 0.00 3.13
2118 2221 3.525537 GCATCATTCACTCTCTTTCCGA 58.474 45.455 0.00 0.00 0.00 4.55
2128 2231 0.462759 CTCTTTCCGAGTGCCCATCC 60.463 60.000 0.00 0.00 34.95 3.51
2141 2244 1.151668 CCCATCCGCATTCGATTCTC 58.848 55.000 0.00 0.00 38.10 2.87
2143 2246 0.786581 CATCCGCATTCGATTCTCCG 59.213 55.000 0.00 0.00 38.10 4.63
2146 2249 2.931386 GCATTCGATTCTCCGCGG 59.069 61.111 22.12 22.12 0.00 6.46
2149 2252 1.006832 CATTCGATTCTCCGCGGTTT 58.993 50.000 27.15 8.38 0.00 3.27
2184 2287 8.693504 CATTTTAAACACTGCACACATTTCTAG 58.306 33.333 0.00 0.00 0.00 2.43
2186 2289 3.769739 ACACTGCACACATTTCTAGGA 57.230 42.857 0.00 0.00 0.00 2.94
2187 2290 4.292186 ACACTGCACACATTTCTAGGAT 57.708 40.909 0.00 0.00 0.00 3.24
2192 2295 4.574892 TGCACACATTTCTAGGATTCGAA 58.425 39.130 0.00 0.00 0.00 3.71
2193 2296 4.631377 TGCACACATTTCTAGGATTCGAAG 59.369 41.667 3.35 0.00 0.00 3.79
2214 2318 1.453155 CTGTTCCATTTCTCACCCCG 58.547 55.000 0.00 0.00 0.00 5.73
2216 2320 1.271163 TGTTCCATTTCTCACCCCGTC 60.271 52.381 0.00 0.00 0.00 4.79
2218 2322 1.077716 CCATTTCTCACCCCGTCCC 60.078 63.158 0.00 0.00 0.00 4.46
2220 2324 0.255890 CATTTCTCACCCCGTCCCAT 59.744 55.000 0.00 0.00 0.00 4.00
2221 2325 1.488812 CATTTCTCACCCCGTCCCATA 59.511 52.381 0.00 0.00 0.00 2.74
2239 2359 7.275779 CGTCCCATACTCTGATAAAAATATCCG 59.724 40.741 0.00 0.00 0.00 4.18
2248 2368 6.996282 TCTGATAAAAATATCCGTTTCTCCCC 59.004 38.462 0.00 0.00 0.00 4.81
2249 2369 6.066032 TGATAAAAATATCCGTTTCTCCCCC 58.934 40.000 0.00 0.00 0.00 5.40
2265 2385 1.806496 CCCCCATACTCTGATGTCCA 58.194 55.000 0.00 0.00 0.00 4.02
2266 2386 1.417890 CCCCCATACTCTGATGTCCAC 59.582 57.143 0.00 0.00 0.00 4.02
2267 2387 2.118679 CCCCATACTCTGATGTCCACA 58.881 52.381 0.00 0.00 0.00 4.17
2298 2418 2.614969 ATCAGGGGCCAGGCTGAA 60.615 61.111 17.94 0.35 0.00 3.02
2376 2496 2.882777 CTGCTCGGCTACTGCGTG 60.883 66.667 0.00 0.00 40.82 5.34
2394 2514 0.117541 TGGAGGGTGCCTACAGGTAA 59.882 55.000 0.00 0.00 39.99 2.85
2403 2523 4.081697 GGTGCCTACAGGTAAAATGCATTT 60.082 41.667 18.99 18.99 37.57 2.32
2423 2543 6.183360 GCATTTGCAATCTCTTCCTCAATTTG 60.183 38.462 0.00 0.00 41.59 2.32
2428 2548 5.860716 GCAATCTCTTCCTCAATTTGTGAAC 59.139 40.000 0.12 0.00 35.22 3.18
2524 2645 0.462581 TCGATCAGTGGCTTCATGGC 60.463 55.000 0.00 0.00 42.18 4.40
2536 2657 0.623194 TTCATGGCGAGATTGGGGAA 59.377 50.000 0.00 0.00 0.00 3.97
2584 2705 6.934645 TGAGGATGAACATAATTATCGGAACC 59.065 38.462 0.00 0.00 0.00 3.62
2611 2732 2.107204 AGGGTCATGCTTCTTCACTGTT 59.893 45.455 0.00 0.00 0.00 3.16
2672 2793 8.553085 TTCTTGGACTATAATCTTCCTCATCA 57.447 34.615 0.00 0.00 0.00 3.07
2673 2794 8.733092 TCTTGGACTATAATCTTCCTCATCAT 57.267 34.615 0.00 0.00 0.00 2.45
2687 2808 9.373450 TCTTCCTCATCATTCTATAGTTTAGCT 57.627 33.333 0.00 0.00 0.00 3.32
2718 2840 3.756933 ATACGGTGGTTACTGTGTGTT 57.243 42.857 2.33 0.00 45.75 3.32
2784 2906 7.346751 AGCATTTTAGTTTCTTGGAAGACAA 57.653 32.000 0.00 0.00 34.13 3.18
2808 2930 1.281867 TGCTAGCTGGCATGTTTAGGT 59.718 47.619 22.10 0.00 37.29 3.08
2901 3023 4.260170 AGGAATTCAGATGCTTCACTCAC 58.740 43.478 7.93 0.00 0.00 3.51
2905 3027 3.758755 TCAGATGCTTCACTCACAAGT 57.241 42.857 2.07 0.00 35.60 3.16
2906 3028 4.077300 TCAGATGCTTCACTCACAAGTT 57.923 40.909 2.07 0.00 31.71 2.66
2942 3179 5.581126 TTTCTTGACATGCACATATTCCC 57.419 39.130 0.00 0.00 0.00 3.97
2952 3189 6.891908 ACATGCACATATTCCCTTTTAAGAGT 59.108 34.615 0.00 0.00 0.00 3.24
2989 3226 5.301551 ACAACTGATTGCAACCTATGTTTCA 59.698 36.000 0.00 0.00 39.66 2.69
3137 3494 1.550327 CTCCTTCCCTTTGCTTTCCC 58.450 55.000 0.00 0.00 0.00 3.97
3156 3513 2.223572 CCCGCTGCCAGCTTTATTTTAG 60.224 50.000 15.80 0.00 39.60 1.85
3161 3518 4.439289 GCTGCCAGCTTTATTTTAGACAGG 60.439 45.833 10.04 0.00 38.45 4.00
3250 3734 6.503616 TTTTGTTTAGCTTGCGTATGTTTG 57.496 33.333 0.00 0.00 0.00 2.93
3360 3847 2.571212 TGCCTGGAAGTAATATTGCCG 58.429 47.619 0.00 0.00 0.00 5.69
3413 3900 5.748402 TCTTCAATGCTGGATGTGATAGTT 58.252 37.500 0.00 0.00 0.00 2.24
3422 3910 6.597672 TGCTGGATGTGATAGTTAAATTCGTT 59.402 34.615 0.00 0.00 0.00 3.85
3566 4054 1.748493 GTATCGGATTTTGGGCTTGCA 59.252 47.619 0.00 0.00 0.00 4.08
3570 4058 2.038295 TCGGATTTTGGGCTTGCAAAAT 59.962 40.909 11.19 11.19 41.83 1.82
3599 4087 3.718815 CTCGGAGGAAAGCTATGTTACC 58.281 50.000 0.00 0.00 0.00 2.85
3650 4138 4.496183 GTGTCGATAGTCTTTTAGTGCTCG 59.504 45.833 0.00 0.00 37.40 5.03
3660 4148 0.894835 TTAGTGCTCGGTGATGCAGA 59.105 50.000 0.00 0.00 40.06 4.26
3670 4158 2.811431 CGGTGATGCAGAAAAGGTTGTA 59.189 45.455 0.00 0.00 0.00 2.41
3679 4169 7.759489 TGCAGAAAAGGTTGTATATCTTGTT 57.241 32.000 0.00 0.00 0.00 2.83
3793 4284 3.009723 TGGCGTTCTTTTGATGGAGATC 58.990 45.455 0.00 0.00 0.00 2.75
3981 4474 1.277557 GCTGAGAGGAAAGCAGAGGAA 59.722 52.381 0.00 0.00 39.31 3.36
3984 4477 2.301296 TGAGAGGAAAGCAGAGGAAGTG 59.699 50.000 0.00 0.00 0.00 3.16
3999 4492 2.047179 GTGGTCGACCCCAAGCTC 60.047 66.667 31.19 9.33 35.92 4.09
4023 4516 3.997400 GAGGCCTTCCCCGAAAGCC 62.997 68.421 6.77 5.98 46.25 4.35
4145 4641 2.125431 CCCCCGCGACGTATGTTT 60.125 61.111 8.23 0.00 0.00 2.83
4160 4660 6.957150 ACGTATGTTTCTTCCTACTATCTCG 58.043 40.000 0.00 0.00 0.00 4.04
4200 4700 3.317603 TCATTCGCTCAACATCAGTGA 57.682 42.857 0.00 0.00 0.00 3.41
4272 4772 2.436646 CGAAGGGATGCGGCAACT 60.437 61.111 6.82 2.81 0.00 3.16
4281 4781 0.036105 ATGCGGCAACTGACAGATCA 60.036 50.000 10.08 0.00 0.00 2.92
4296 4796 2.299582 CAGATCAAGCTCGATGGAGGAT 59.700 50.000 6.88 1.12 40.80 3.24
4345 4845 3.070159 ACGGTACAGATGATGATGGGAAG 59.930 47.826 0.00 0.00 0.00 3.46
4347 4847 3.648067 GGTACAGATGATGATGGGAAGGA 59.352 47.826 0.00 0.00 0.00 3.36
4350 4850 3.136077 ACAGATGATGATGGGAAGGACAG 59.864 47.826 0.00 0.00 0.00 3.51
4368 4871 0.179161 AGAAGAACGACGATGCCGAG 60.179 55.000 0.00 0.00 39.50 4.63
4390 4893 0.179000 GCCGGGACATGATCTGAGTT 59.821 55.000 2.18 0.00 0.00 3.01
4394 4897 2.932614 CGGGACATGATCTGAGTTTGTC 59.067 50.000 0.00 7.66 36.76 3.18
4432 4937 7.064371 CCTCTTGCTAGATATGTACGTACGTAT 59.936 40.741 31.14 31.14 40.18 3.06
4458 4963 6.978080 GGTACCATTAATTAACCAAGCATGTG 59.022 38.462 7.15 0.00 0.00 3.21
4622 5429 1.880894 CACAAGTGCAGGCTGATGG 59.119 57.895 20.86 3.01 0.00 3.51
4625 5432 0.892358 CAAGTGCAGGCTGATGGTGT 60.892 55.000 20.86 0.00 0.00 4.16
4629 5436 0.321919 TGCAGGCTGATGGTGTTCTC 60.322 55.000 20.86 0.00 0.00 2.87
4630 5437 1.028868 GCAGGCTGATGGTGTTCTCC 61.029 60.000 20.86 0.00 0.00 3.71
4632 5439 0.908198 AGGCTGATGGTGTTCTCCTC 59.092 55.000 0.00 0.00 0.00 3.71
4634 5441 1.406614 GGCTGATGGTGTTCTCCTCTG 60.407 57.143 0.00 0.00 0.00 3.35
4635 5442 1.552337 GCTGATGGTGTTCTCCTCTGA 59.448 52.381 0.00 0.00 0.00 3.27
4639 5446 3.007290 TGATGGTGTTCTCCTCTGACTTG 59.993 47.826 0.00 0.00 0.00 3.16
4668 5488 1.079127 CTAACACCCCCAGCTGACG 60.079 63.158 17.39 4.35 0.00 4.35
4674 5494 2.513204 CCCCAGCTGACGCTCATG 60.513 66.667 17.39 0.00 45.15 3.07
4737 5557 2.356665 TGTTTTTGTGCCCTCTGCTA 57.643 45.000 0.00 0.00 42.00 3.49
4738 5558 1.953686 TGTTTTTGTGCCCTCTGCTAC 59.046 47.619 0.00 0.00 42.00 3.58
4739 5559 2.230660 GTTTTTGTGCCCTCTGCTACT 58.769 47.619 0.00 0.00 42.00 2.57
4792 5613 0.747283 GGCACTGGAAGATGAGGCAG 60.747 60.000 0.00 0.00 37.43 4.85
4807 5628 3.491208 GCAGTGATCATGCCTCCTT 57.509 52.632 15.24 0.00 37.73 3.36
4808 5629 1.022735 GCAGTGATCATGCCTCCTTG 58.977 55.000 15.24 1.03 37.73 3.61
4810 5631 2.719739 CAGTGATCATGCCTCCTTGTT 58.280 47.619 0.00 0.00 0.00 2.83
4874 5915 5.452917 CCATGCACACTCTCTGATGAAGATA 60.453 44.000 0.00 0.00 33.29 1.98
4875 5916 5.259832 TGCACACTCTCTGATGAAGATAG 57.740 43.478 0.00 0.00 35.68 2.08
4876 5917 4.952335 TGCACACTCTCTGATGAAGATAGA 59.048 41.667 0.00 0.00 34.12 1.98
4877 5918 5.597594 TGCACACTCTCTGATGAAGATAGAT 59.402 40.000 0.00 0.00 34.12 1.98
4948 6000 0.593128 CTCTTTTTGGCCGTCCACTG 59.407 55.000 0.00 0.00 43.33 3.66
4971 6023 3.741029 GCATCTGGCGACTCAGTAA 57.259 52.632 0.00 0.00 36.25 2.24
4981 6033 3.424962 GGCGACTCAGTAAAAACAGCATC 60.425 47.826 0.00 0.00 0.00 3.91
4988 6044 1.892474 GTAAAAACAGCATCTGGGCCA 59.108 47.619 5.85 5.85 35.51 5.36
4990 6046 0.178953 AAAACAGCATCTGGGCCAGT 60.179 50.000 31.60 17.12 35.51 4.00
5005 6061 1.006102 CAGTCCTTGTCGGCTTCGT 60.006 57.895 0.00 0.00 35.06 3.85
5007 6063 1.737008 GTCCTTGTCGGCTTCGTCC 60.737 63.158 0.00 0.00 35.06 4.79
5015 6071 2.636412 CGGCTTCGTCCTGTCCTGA 61.636 63.158 0.00 0.00 0.00 3.86
5016 6072 1.901085 GGCTTCGTCCTGTCCTGAT 59.099 57.895 0.00 0.00 0.00 2.90
5017 6073 0.460987 GGCTTCGTCCTGTCCTGATG 60.461 60.000 0.00 0.00 0.00 3.07
5018 6074 0.532573 GCTTCGTCCTGTCCTGATGA 59.467 55.000 0.00 0.00 0.00 2.92
5019 6075 1.737363 GCTTCGTCCTGTCCTGATGAC 60.737 57.143 0.00 0.00 44.72 3.06
5020 6076 0.895530 TTCGTCCTGTCCTGATGACC 59.104 55.000 0.00 0.00 43.78 4.02
5021 6077 0.039764 TCGTCCTGTCCTGATGACCT 59.960 55.000 0.00 0.00 43.78 3.85
5022 6078 0.174389 CGTCCTGTCCTGATGACCTG 59.826 60.000 0.00 0.00 43.78 4.00
5023 6079 1.561643 GTCCTGTCCTGATGACCTGA 58.438 55.000 0.00 0.00 43.78 3.86
5024 6080 2.114616 GTCCTGTCCTGATGACCTGAT 58.885 52.381 0.00 0.00 43.78 2.90
5025 6081 2.102252 GTCCTGTCCTGATGACCTGATC 59.898 54.545 0.00 0.00 43.78 2.92
5026 6082 1.068281 CCTGTCCTGATGACCTGATCG 59.932 57.143 0.00 0.00 43.78 3.69
5027 6083 1.753649 CTGTCCTGATGACCTGATCGT 59.246 52.381 0.00 0.00 43.78 3.73
5028 6084 1.478105 TGTCCTGATGACCTGATCGTG 59.522 52.381 0.00 0.00 43.78 4.35
5029 6085 1.478510 GTCCTGATGACCTGATCGTGT 59.521 52.381 0.00 0.00 38.09 4.49
5030 6086 2.688446 GTCCTGATGACCTGATCGTGTA 59.312 50.000 0.00 0.00 38.09 2.90
5031 6087 2.688446 TCCTGATGACCTGATCGTGTAC 59.312 50.000 0.00 0.00 0.00 2.90
5032 6088 2.223829 CCTGATGACCTGATCGTGTACC 60.224 54.545 0.00 0.00 0.00 3.34
5033 6089 1.404035 TGATGACCTGATCGTGTACCG 59.596 52.381 0.00 0.00 38.13 4.02
5034 6090 0.102481 ATGACCTGATCGTGTACCGC 59.898 55.000 0.00 0.00 36.19 5.68
5035 6091 1.585521 GACCTGATCGTGTACCGCG 60.586 63.158 0.00 0.00 38.82 6.46
5036 6092 2.262471 GACCTGATCGTGTACCGCGT 62.262 60.000 4.92 0.00 38.57 6.01
5037 6093 1.153901 CCTGATCGTGTACCGCGTT 60.154 57.895 4.92 0.00 38.57 4.84
5038 6094 1.138047 CCTGATCGTGTACCGCGTTC 61.138 60.000 4.92 8.34 38.57 3.95
5039 6095 0.455464 CTGATCGTGTACCGCGTTCA 60.455 55.000 4.92 15.20 41.54 3.18
5040 6096 0.171679 TGATCGTGTACCGCGTTCAT 59.828 50.000 4.92 0.00 39.84 2.57
5041 6097 0.844503 GATCGTGTACCGCGTTCATC 59.155 55.000 4.92 0.00 38.57 2.92
5042 6098 0.454600 ATCGTGTACCGCGTTCATCT 59.545 50.000 4.92 0.00 38.57 2.90
5043 6099 0.179181 TCGTGTACCGCGTTCATCTC 60.179 55.000 4.92 0.00 38.57 2.75
5044 6100 0.179171 CGTGTACCGCGTTCATCTCT 60.179 55.000 4.92 0.00 32.40 3.10
5045 6101 1.063027 CGTGTACCGCGTTCATCTCTA 59.937 52.381 4.92 0.00 32.40 2.43
5046 6102 2.448219 GTGTACCGCGTTCATCTCTAC 58.552 52.381 4.92 0.00 0.00 2.59
5047 6103 2.097142 GTGTACCGCGTTCATCTCTACT 59.903 50.000 4.92 0.00 0.00 2.57
5048 6104 3.310774 GTGTACCGCGTTCATCTCTACTA 59.689 47.826 4.92 0.00 0.00 1.82
5049 6105 3.558829 TGTACCGCGTTCATCTCTACTAG 59.441 47.826 4.92 0.00 0.00 2.57
5050 6106 1.334243 ACCGCGTTCATCTCTACTAGC 59.666 52.381 4.92 0.00 0.00 3.42
5051 6107 1.333931 CCGCGTTCATCTCTACTAGCA 59.666 52.381 4.92 0.00 0.00 3.49
5052 6108 2.603412 CCGCGTTCATCTCTACTAGCAG 60.603 54.545 4.92 0.00 0.00 4.24
5053 6109 2.603412 CGCGTTCATCTCTACTAGCAGG 60.603 54.545 0.00 0.00 0.00 4.85
5054 6110 2.619177 GCGTTCATCTCTACTAGCAGGA 59.381 50.000 0.00 0.00 0.00 3.86
5055 6111 3.304391 GCGTTCATCTCTACTAGCAGGAG 60.304 52.174 0.00 0.00 0.00 3.69
5056 6112 3.880490 CGTTCATCTCTACTAGCAGGAGT 59.120 47.826 0.00 0.00 0.00 3.85
5057 6113 5.057819 CGTTCATCTCTACTAGCAGGAGTA 58.942 45.833 0.00 0.00 0.00 2.59
5058 6114 5.049954 CGTTCATCTCTACTAGCAGGAGTAC 60.050 48.000 0.00 0.00 0.00 2.73
5059 6115 4.975631 TCATCTCTACTAGCAGGAGTACC 58.024 47.826 0.00 0.00 0.00 3.34
5061 6117 5.132985 TCATCTCTACTAGCAGGAGTACCTT 59.867 44.000 0.00 0.00 45.36 3.50
5062 6118 5.453866 TCTCTACTAGCAGGAGTACCTTT 57.546 43.478 0.00 0.00 45.36 3.11
5063 6119 5.828871 TCTCTACTAGCAGGAGTACCTTTT 58.171 41.667 0.00 0.00 45.36 2.27
5064 6120 6.254522 TCTCTACTAGCAGGAGTACCTTTTT 58.745 40.000 0.00 0.00 45.36 1.94
5092 6148 5.896073 CCAGTTTATGGGATAGGAGTTCT 57.104 43.478 0.00 0.00 46.36 3.01
5093 6149 6.996180 CCAGTTTATGGGATAGGAGTTCTA 57.004 41.667 0.00 0.00 46.36 2.10
5094 6150 7.560796 CCAGTTTATGGGATAGGAGTTCTAT 57.439 40.000 0.00 0.00 46.36 1.98
5095 6151 7.978925 CCAGTTTATGGGATAGGAGTTCTATT 58.021 38.462 0.00 0.00 46.36 1.73
5096 6152 8.440771 CCAGTTTATGGGATAGGAGTTCTATTT 58.559 37.037 0.00 0.00 46.36 1.40
5097 6153 9.853177 CAGTTTATGGGATAGGAGTTCTATTTT 57.147 33.333 0.00 0.00 38.71 1.82
5099 6155 9.286170 GTTTATGGGATAGGAGTTCTATTTTCC 57.714 37.037 0.00 0.00 38.71 3.13
5100 6156 8.814448 TTATGGGATAGGAGTTCTATTTTCCT 57.186 34.615 0.00 0.00 43.53 3.36
5101 6157 6.500589 TGGGATAGGAGTTCTATTTTCCTG 57.499 41.667 2.63 0.00 41.33 3.86
5102 6158 5.163195 TGGGATAGGAGTTCTATTTTCCTGC 60.163 44.000 2.63 0.00 41.33 4.85
5103 6159 5.309638 GGATAGGAGTTCTATTTTCCTGCC 58.690 45.833 2.63 1.14 41.33 4.85
5104 6160 3.268023 AGGAGTTCTATTTTCCTGCCG 57.732 47.619 0.00 0.00 39.80 5.69
5105 6161 2.092914 AGGAGTTCTATTTTCCTGCCGG 60.093 50.000 0.00 0.00 39.80 6.13
5106 6162 2.355818 GGAGTTCTATTTTCCTGCCGGT 60.356 50.000 1.90 0.00 0.00 5.28
5107 6163 2.937149 GAGTTCTATTTTCCTGCCGGTC 59.063 50.000 1.90 0.00 0.00 4.79
5108 6164 2.304761 AGTTCTATTTTCCTGCCGGTCA 59.695 45.455 1.90 0.00 0.00 4.02
5109 6165 3.078837 GTTCTATTTTCCTGCCGGTCAA 58.921 45.455 1.90 0.00 0.00 3.18
5110 6166 2.706890 TCTATTTTCCTGCCGGTCAAC 58.293 47.619 1.90 0.00 0.00 3.18
5111 6167 2.039216 TCTATTTTCCTGCCGGTCAACA 59.961 45.455 1.90 0.00 0.00 3.33
5112 6168 1.247567 ATTTTCCTGCCGGTCAACAG 58.752 50.000 1.90 0.85 0.00 3.16
5113 6169 1.452145 TTTTCCTGCCGGTCAACAGC 61.452 55.000 1.90 0.00 32.37 4.40
5114 6170 2.337879 TTTCCTGCCGGTCAACAGCT 62.338 55.000 1.90 0.00 32.37 4.24
5115 6171 2.281761 CCTGCCGGTCAACAGCTT 60.282 61.111 1.90 0.00 32.37 3.74
5116 6172 1.003839 CCTGCCGGTCAACAGCTTA 60.004 57.895 1.90 0.00 32.37 3.09
5117 6173 1.021390 CCTGCCGGTCAACAGCTTAG 61.021 60.000 1.90 0.00 32.37 2.18
5118 6174 1.003839 TGCCGGTCAACAGCTTAGG 60.004 57.895 1.90 0.00 0.00 2.69
5119 6175 1.003718 GCCGGTCAACAGCTTAGGT 60.004 57.895 1.90 0.00 0.00 3.08
5120 6176 1.298859 GCCGGTCAACAGCTTAGGTG 61.299 60.000 10.09 10.09 37.06 4.00
5121 6177 0.034896 CCGGTCAACAGCTTAGGTGT 59.965 55.000 11.59 11.59 46.58 4.16
5122 6178 1.274167 CCGGTCAACAGCTTAGGTGTA 59.726 52.381 17.66 0.00 43.73 2.90
5123 6179 2.607187 CGGTCAACAGCTTAGGTGTAG 58.393 52.381 17.66 3.93 43.73 2.74
5124 6180 2.347731 GGTCAACAGCTTAGGTGTAGC 58.652 52.381 17.66 8.94 43.73 3.58
5126 6182 3.557264 GGTCAACAGCTTAGGTGTAGCTT 60.557 47.826 17.66 0.00 46.42 3.74
5127 6183 3.433615 GTCAACAGCTTAGGTGTAGCTTG 59.566 47.826 17.66 11.92 46.42 4.01
5128 6184 3.071023 TCAACAGCTTAGGTGTAGCTTGT 59.929 43.478 17.66 0.00 46.42 3.16
5129 6185 3.771577 ACAGCTTAGGTGTAGCTTGTT 57.228 42.857 15.85 0.00 46.42 2.83
5130 6186 3.403038 ACAGCTTAGGTGTAGCTTGTTG 58.597 45.455 15.85 0.00 46.42 3.33
5131 6187 2.160417 CAGCTTAGGTGTAGCTTGTTGC 59.840 50.000 2.91 0.00 46.42 4.17
5132 6188 6.557480 ACAGCTTAGGTGTAGCTTGTTGCT 62.557 45.833 15.85 0.00 46.42 3.91
5133 6189 7.946858 ACAGCTTAGGTGTAGCTTGTTGCTT 62.947 44.000 15.85 0.00 46.42 3.91
5143 6199 3.990318 GCTTGTTGCTTTGTAAGGACT 57.010 42.857 0.00 0.00 38.95 3.85
5144 6200 3.632189 GCTTGTTGCTTTGTAAGGACTG 58.368 45.455 0.00 0.00 38.95 3.51
5145 6201 3.315191 GCTTGTTGCTTTGTAAGGACTGA 59.685 43.478 0.00 0.00 38.95 3.41
5146 6202 4.789802 GCTTGTTGCTTTGTAAGGACTGAC 60.790 45.833 0.00 0.00 38.95 3.51
5147 6203 4.150897 TGTTGCTTTGTAAGGACTGACT 57.849 40.909 0.00 0.00 0.00 3.41
5148 6204 5.284861 TGTTGCTTTGTAAGGACTGACTA 57.715 39.130 0.00 0.00 0.00 2.59
5149 6205 5.054477 TGTTGCTTTGTAAGGACTGACTAC 58.946 41.667 0.00 0.00 0.00 2.73
5150 6206 4.948341 TGCTTTGTAAGGACTGACTACA 57.052 40.909 0.00 0.00 0.00 2.74
5151 6207 5.483685 TGCTTTGTAAGGACTGACTACAT 57.516 39.130 0.00 0.00 0.00 2.29
5152 6208 5.237815 TGCTTTGTAAGGACTGACTACATG 58.762 41.667 0.00 0.00 0.00 3.21
5153 6209 5.221641 TGCTTTGTAAGGACTGACTACATGT 60.222 40.000 2.69 2.69 0.00 3.21
5154 6210 5.348997 GCTTTGTAAGGACTGACTACATGTC 59.651 44.000 0.00 0.00 45.54 3.06
5195 6251 8.532977 AATTAAATTTTGGTTCAGTCGATTGG 57.467 30.769 8.17 0.00 0.00 3.16
5196 6252 3.575965 ATTTTGGTTCAGTCGATTGGC 57.424 42.857 8.17 1.86 0.00 4.52
5197 6253 1.243902 TTTGGTTCAGTCGATTGGCC 58.756 50.000 8.17 11.00 0.00 5.36
5198 6254 0.608035 TTGGTTCAGTCGATTGGCCC 60.608 55.000 8.17 8.66 0.00 5.80
5199 6255 1.749258 GGTTCAGTCGATTGGCCCC 60.749 63.158 8.17 2.30 0.00 5.80
5200 6256 1.299976 GTTCAGTCGATTGGCCCCT 59.700 57.895 8.17 0.00 0.00 4.79
5201 6257 1.026718 GTTCAGTCGATTGGCCCCTG 61.027 60.000 8.17 0.00 0.00 4.45
5202 6258 2.124570 CAGTCGATTGGCCCCTGG 60.125 66.667 0.00 0.00 0.00 4.45
5203 6259 3.411517 AGTCGATTGGCCCCTGGG 61.412 66.667 5.50 5.50 38.57 4.45
5213 6269 2.681064 CCCCTGGGCATGTGTTGG 60.681 66.667 7.39 0.00 0.00 3.77
5220 6276 3.281240 GCATGTGTTGGCTCCCTG 58.719 61.111 0.00 0.00 0.00 4.45
5221 6277 2.998279 GCATGTGTTGGCTCCCTGC 61.998 63.158 0.00 0.00 41.94 4.85
5230 6286 2.124942 GCTCCCTGCCACAGCTAC 60.125 66.667 0.00 0.00 40.80 3.58
5231 6287 2.185350 CTCCCTGCCACAGCTACG 59.815 66.667 0.00 0.00 40.80 3.51
5232 6288 2.603473 TCCCTGCCACAGCTACGT 60.603 61.111 0.00 0.00 40.80 3.57
5233 6289 1.304630 TCCCTGCCACAGCTACGTA 60.305 57.895 0.00 0.00 40.80 3.57
5234 6290 1.153628 CCCTGCCACAGCTACGTAC 60.154 63.158 0.00 0.00 40.80 3.67
5235 6291 1.516386 CCTGCCACAGCTACGTACG 60.516 63.158 15.01 15.01 40.80 3.67
5236 6292 1.504900 CTGCCACAGCTACGTACGA 59.495 57.895 24.41 4.69 40.80 3.43
5237 6293 0.797249 CTGCCACAGCTACGTACGAC 60.797 60.000 24.41 10.85 40.80 4.34
5238 6294 1.210931 GCCACAGCTACGTACGACA 59.789 57.895 24.41 8.23 35.50 4.35
5239 6295 0.179145 GCCACAGCTACGTACGACAT 60.179 55.000 24.41 1.48 35.50 3.06
5240 6296 1.064505 GCCACAGCTACGTACGACATA 59.935 52.381 24.41 2.81 35.50 2.29
5241 6297 2.713011 CCACAGCTACGTACGACATAC 58.287 52.381 24.41 6.35 0.00 2.39
5242 6298 2.096335 CCACAGCTACGTACGACATACA 59.904 50.000 24.41 0.00 32.79 2.29
5243 6299 3.351782 CACAGCTACGTACGACATACAG 58.648 50.000 24.41 9.41 32.79 2.74
5244 6300 3.063045 CACAGCTACGTACGACATACAGA 59.937 47.826 24.41 0.00 32.79 3.41
5245 6301 3.875727 ACAGCTACGTACGACATACAGAT 59.124 43.478 24.41 4.63 32.79 2.90
5246 6302 4.334759 ACAGCTACGTACGACATACAGATT 59.665 41.667 24.41 0.00 32.79 2.40
5247 6303 5.525012 ACAGCTACGTACGACATACAGATTA 59.475 40.000 24.41 0.00 32.79 1.75
5248 6304 6.072098 CAGCTACGTACGACATACAGATTAG 58.928 44.000 24.41 9.85 32.79 1.73
5249 6305 4.845060 GCTACGTACGACATACAGATTAGC 59.155 45.833 24.41 15.81 32.79 3.09
5250 6306 4.888038 ACGTACGACATACAGATTAGCA 57.112 40.909 24.41 0.00 32.79 3.49
5251 6307 5.239359 ACGTACGACATACAGATTAGCAA 57.761 39.130 24.41 0.00 32.79 3.91
5252 6308 5.828747 ACGTACGACATACAGATTAGCAAT 58.171 37.500 24.41 0.00 32.79 3.56
5253 6309 6.270815 ACGTACGACATACAGATTAGCAATT 58.729 36.000 24.41 0.00 32.79 2.32
5254 6310 6.755141 ACGTACGACATACAGATTAGCAATTT 59.245 34.615 24.41 0.00 32.79 1.82
5255 6311 7.057402 CGTACGACATACAGATTAGCAATTTG 58.943 38.462 10.44 0.00 32.79 2.32
5256 6312 7.043656 CGTACGACATACAGATTAGCAATTTGA 60.044 37.037 10.44 0.00 32.79 2.69
5257 6313 7.792374 ACGACATACAGATTAGCAATTTGAT 57.208 32.000 0.00 0.00 0.00 2.57
5258 6314 8.213518 ACGACATACAGATTAGCAATTTGATT 57.786 30.769 0.00 0.00 0.00 2.57
5259 6315 8.124823 ACGACATACAGATTAGCAATTTGATTG 58.875 33.333 0.00 0.00 43.06 2.67
5260 6316 8.337532 CGACATACAGATTAGCAATTTGATTGA 58.662 33.333 0.00 0.00 42.83 2.57
5268 6324 9.538508 AGATTAGCAATTTGATTGAAATTAGGC 57.461 29.630 0.00 0.00 41.50 3.93
5269 6325 9.316730 GATTAGCAATTTGATTGAAATTAGGCA 57.683 29.630 0.00 0.00 41.50 4.75
5270 6326 8.706492 TTAGCAATTTGATTGAAATTAGGCAG 57.294 30.769 0.00 0.00 41.50 4.85
5271 6327 5.583457 AGCAATTTGATTGAAATTAGGCAGC 59.417 36.000 0.00 1.39 41.50 5.25
5272 6328 5.352016 GCAATTTGATTGAAATTAGGCAGCA 59.648 36.000 0.00 0.00 41.50 4.41
5273 6329 6.037830 GCAATTTGATTGAAATTAGGCAGCAT 59.962 34.615 0.00 0.00 41.50 3.79
5274 6330 7.406553 CAATTTGATTGAAATTAGGCAGCATG 58.593 34.615 0.00 0.00 41.50 4.06
5275 6331 5.526111 ATTTGATTGAAATTAGGCAGCATGC 59.474 36.000 10.51 10.51 46.89 4.06
5294 6350 2.827652 GCAGGTGCACTAATCTACTCC 58.172 52.381 17.98 0.00 41.59 3.85
5295 6351 2.483889 GCAGGTGCACTAATCTACTCCC 60.484 54.545 17.98 0.00 41.59 4.30
5296 6352 3.034635 CAGGTGCACTAATCTACTCCCT 58.965 50.000 17.98 0.00 0.00 4.20
5297 6353 3.068873 CAGGTGCACTAATCTACTCCCTC 59.931 52.174 17.98 0.00 0.00 4.30
5298 6354 2.365941 GGTGCACTAATCTACTCCCTCC 59.634 54.545 17.98 0.00 0.00 4.30
5299 6355 2.034812 GTGCACTAATCTACTCCCTCCG 59.965 54.545 10.32 0.00 0.00 4.63
5300 6356 2.308690 GCACTAATCTACTCCCTCCGT 58.691 52.381 0.00 0.00 0.00 4.69
5301 6357 2.694109 GCACTAATCTACTCCCTCCGTT 59.306 50.000 0.00 0.00 0.00 4.44
5302 6358 3.243468 GCACTAATCTACTCCCTCCGTTC 60.243 52.174 0.00 0.00 0.00 3.95
5303 6359 3.318557 CACTAATCTACTCCCTCCGTTCC 59.681 52.174 0.00 0.00 0.00 3.62
5304 6360 2.850695 AATCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
5305 6361 3.967467 AATCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
5306 6362 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
5307 6363 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
5308 6364 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
5309 6365 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
5310 6366 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
5311 6367 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
5312 6368 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
5313 6369 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5314 6370 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5315 6371 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5316 6372 5.541484 TCCCTCCGTTCCTAAATATAAGTCC 59.459 44.000 0.00 0.00 0.00 3.85
5317 6373 5.543020 CCCTCCGTTCCTAAATATAAGTCCT 59.457 44.000 0.00 0.00 0.00 3.85
5318 6374 6.042897 CCCTCCGTTCCTAAATATAAGTCCTT 59.957 42.308 0.00 0.00 0.00 3.36
5319 6375 7.419865 CCCTCCGTTCCTAAATATAAGTCCTTT 60.420 40.741 0.00 0.00 0.00 3.11
5320 6376 7.991460 CCTCCGTTCCTAAATATAAGTCCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.059597 CGGTCAAGATTATTCGGACATGC 60.060 47.826 0.00 0.00 34.61 4.06
1 2 4.119862 ACGGTCAAGATTATTCGGACATG 58.880 43.478 11.77 0.00 34.61 3.21
2 3 4.142026 TGACGGTCAAGATTATTCGGACAT 60.142 41.667 8.68 3.33 34.61 3.06
3 4 3.193903 TGACGGTCAAGATTATTCGGACA 59.806 43.478 8.68 0.00 34.61 4.02
4 5 3.777478 TGACGGTCAAGATTATTCGGAC 58.223 45.455 8.68 0.00 33.15 4.79
8 9 6.072673 ACCTTGTTTGACGGTCAAGATTATTC 60.073 38.462 21.47 9.45 40.35 1.75
10 11 5.313712 ACCTTGTTTGACGGTCAAGATTAT 58.686 37.500 21.47 6.71 40.35 1.28
29 30 4.351111 AGTCTAGGTTGTTGGATTGACCTT 59.649 41.667 0.00 0.00 42.30 3.50
42 43 3.265791 GTCATTGGAGCAGTCTAGGTTG 58.734 50.000 0.00 0.00 0.00 3.77
43 44 2.093973 CGTCATTGGAGCAGTCTAGGTT 60.094 50.000 0.00 0.00 0.00 3.50
68 69 1.535462 GGCACGCTAAACATGTTGAGT 59.465 47.619 21.73 11.33 0.00 3.41
138 141 3.068165 CAGGTAGTGGATATCGTCTTGCA 59.932 47.826 0.00 0.00 0.00 4.08
142 145 6.123651 GGATATCAGGTAGTGGATATCGTCT 58.876 44.000 4.83 0.46 46.90 4.18
143 146 5.886474 TGGATATCAGGTAGTGGATATCGTC 59.114 44.000 4.83 4.31 46.90 4.20
144 147 5.652891 GTGGATATCAGGTAGTGGATATCGT 59.347 44.000 4.83 0.00 46.90 3.73
145 148 5.652452 TGTGGATATCAGGTAGTGGATATCG 59.348 44.000 4.83 0.00 46.90 2.92
146 149 6.404844 CGTGTGGATATCAGGTAGTGGATATC 60.405 46.154 4.83 11.38 45.96 1.63
147 150 5.419155 CGTGTGGATATCAGGTAGTGGATAT 59.581 44.000 4.83 0.00 38.94 1.63
148 151 4.765339 CGTGTGGATATCAGGTAGTGGATA 59.235 45.833 4.83 0.00 0.00 2.59
151 154 2.545952 GCGTGTGGATATCAGGTAGTGG 60.546 54.545 4.83 0.00 0.00 4.00
153 156 2.362397 CTGCGTGTGGATATCAGGTAGT 59.638 50.000 4.83 0.00 32.11 2.73
160 163 8.174484 CAGTATATTAACTGCGTGTGGATATC 57.826 38.462 0.00 0.00 40.40 1.63
186 189 7.671495 ACGTGCAATGCATATTGATATTAGA 57.329 32.000 12.38 0.00 45.21 2.10
198 204 3.574284 AAATGTGTACGTGCAATGCAT 57.426 38.095 12.38 5.12 41.91 3.96
220 228 7.508977 TGGGACTGTGTGATCTATACATATCAA 59.491 37.037 0.00 0.00 34.06 2.57
222 230 7.468141 TGGGACTGTGTGATCTATACATATC 57.532 40.000 0.00 0.00 29.54 1.63
223 231 8.441311 AATGGGACTGTGTGATCTATACATAT 57.559 34.615 0.00 0.00 29.54 1.78
232 240 5.647658 TGTCAATTAATGGGACTGTGTGATC 59.352 40.000 16.87 0.00 32.84 2.92
323 332 3.766591 TGGATGCCATACGTTCCAAAATT 59.233 39.130 1.89 0.00 0.00 1.82
342 351 0.039764 TGTGTTGGTTGGTGGTTGGA 59.960 50.000 0.00 0.00 0.00 3.53
366 375 7.177744 GGTGGTGGGATCTTTTGTTCTAAATAA 59.822 37.037 0.00 0.00 0.00 1.40
400 409 3.568007 GTGTGCTTTATCACCACTTGGAA 59.432 43.478 1.14 0.00 38.94 3.53
432 441 3.198068 GTCTGTGTCTTCTGCTTTGTGA 58.802 45.455 0.00 0.00 0.00 3.58
442 451 3.386768 TGCCTAGTTGTCTGTGTCTTC 57.613 47.619 0.00 0.00 0.00 2.87
496 505 5.007626 AGTTGCATTAGTGGTATGTTATGCG 59.992 40.000 0.00 0.00 40.81 4.73
500 509 9.845740 AATGATAGTTGCATTAGTGGTATGTTA 57.154 29.630 0.00 0.00 34.41 2.41
504 513 7.992608 TGTCAATGATAGTTGCATTAGTGGTAT 59.007 33.333 0.00 0.00 34.41 2.73
506 515 6.179756 TGTCAATGATAGTTGCATTAGTGGT 58.820 36.000 0.00 0.00 34.41 4.16
507 516 6.682423 TGTCAATGATAGTTGCATTAGTGG 57.318 37.500 0.00 0.00 34.41 4.00
544 560 8.873215 TTTACTGCTTCTATTATGTGCTACTC 57.127 34.615 0.00 0.00 0.00 2.59
559 578 8.532977 TTTTTGCTGGATTTATTTACTGCTTC 57.467 30.769 0.00 0.00 0.00 3.86
578 597 1.131504 CATGCATGGTGCCATTTTTGC 59.868 47.619 19.40 4.40 44.23 3.68
638 661 6.008960 GGGAGCCATGAGAATGAGATTTATT 58.991 40.000 0.00 0.00 0.00 1.40
650 673 2.905415 AAAATGTGGGAGCCATGAGA 57.095 45.000 0.00 0.00 35.28 3.27
651 674 4.142093 CCTTTAAAATGTGGGAGCCATGAG 60.142 45.833 0.00 0.00 35.28 2.90
652 675 3.768757 CCTTTAAAATGTGGGAGCCATGA 59.231 43.478 0.00 0.00 35.28 3.07
653 676 3.679639 GCCTTTAAAATGTGGGAGCCATG 60.680 47.826 0.00 0.00 35.28 3.66
654 677 2.501316 GCCTTTAAAATGTGGGAGCCAT 59.499 45.455 0.00 0.00 35.28 4.40
655 678 1.899142 GCCTTTAAAATGTGGGAGCCA 59.101 47.619 0.00 0.00 0.00 4.75
656 679 1.207089 GGCCTTTAAAATGTGGGAGCC 59.793 52.381 0.00 0.00 0.00 4.70
657 680 1.135112 CGGCCTTTAAAATGTGGGAGC 60.135 52.381 0.00 0.00 0.00 4.70
659 682 2.588464 TCGGCCTTTAAAATGTGGGA 57.412 45.000 0.00 0.00 0.00 4.37
660 683 2.100749 GGATCGGCCTTTAAAATGTGGG 59.899 50.000 0.00 0.00 0.00 4.61
661 684 2.100749 GGGATCGGCCTTTAAAATGTGG 59.899 50.000 0.00 0.00 36.66 4.17
662 685 2.757868 TGGGATCGGCCTTTAAAATGTG 59.242 45.455 0.00 0.00 36.66 3.21
663 686 3.094484 TGGGATCGGCCTTTAAAATGT 57.906 42.857 0.00 0.00 36.66 2.71
664 687 4.464069 TTTGGGATCGGCCTTTAAAATG 57.536 40.909 0.00 0.00 36.66 2.32
665 688 4.323180 GGTTTTGGGATCGGCCTTTAAAAT 60.323 41.667 0.00 0.00 36.66 1.82
666 689 3.007074 GGTTTTGGGATCGGCCTTTAAAA 59.993 43.478 0.00 0.00 36.66 1.52
674 697 1.886542 GGATATGGTTTTGGGATCGGC 59.113 52.381 0.00 0.00 0.00 5.54
781 804 4.335647 CTGGTCAGCCCGTTGCCT 62.336 66.667 0.00 0.00 42.71 4.75
816 839 2.394930 TAGCATTTTGTAGAGGCGCA 57.605 45.000 10.83 0.00 0.00 6.09
817 840 2.223272 GGTTAGCATTTTGTAGAGGCGC 60.223 50.000 0.00 0.00 0.00 6.53
818 841 2.354821 GGGTTAGCATTTTGTAGAGGCG 59.645 50.000 0.00 0.00 0.00 5.52
819 842 2.688446 GGGGTTAGCATTTTGTAGAGGC 59.312 50.000 0.00 0.00 0.00 4.70
820 843 3.694566 GTGGGGTTAGCATTTTGTAGAGG 59.305 47.826 0.00 0.00 0.00 3.69
879 902 0.965363 CACGGGAGATTGGTTTGGGG 60.965 60.000 0.00 0.00 0.00 4.96
898 921 3.716539 TACATGCGCGGCTGACTCC 62.717 63.158 8.83 0.00 0.00 3.85
956 979 2.184322 CTGACGACCACGATGGGG 59.816 66.667 8.57 0.00 43.37 4.96
963 986 3.418068 GCTGCTGCTGACGACCAC 61.418 66.667 10.92 0.00 36.03 4.16
965 988 3.117171 CTGCTGCTGCTGACGACC 61.117 66.667 17.00 0.00 40.01 4.79
966 989 3.786586 GCTGCTGCTGCTGACGAC 61.787 66.667 23.39 4.67 40.01 4.34
967 990 4.303993 TGCTGCTGCTGCTGACGA 62.304 61.111 27.67 8.50 40.01 4.20
1194 1226 1.449956 GCAGAGGAAGAGCAGCAGG 60.450 63.158 0.00 0.00 0.00 4.85
1701 1745 1.357258 CTTGCAGCGTGCCTCTGTAG 61.357 60.000 7.38 0.00 44.23 2.74
1782 1826 2.468532 AAACACGCAGAAACTTTCGG 57.531 45.000 0.00 0.00 34.02 4.30
1789 1833 5.060506 TCAAAGGAGATAAACACGCAGAAA 58.939 37.500 0.00 0.00 0.00 2.52
1793 1837 2.742053 GCTCAAAGGAGATAAACACGCA 59.258 45.455 0.00 0.00 44.26 5.24
1796 1840 5.389935 CGAACAGCTCAAAGGAGATAAACAC 60.390 44.000 0.00 0.00 44.26 3.32
1798 1842 4.929808 TCGAACAGCTCAAAGGAGATAAAC 59.070 41.667 0.00 0.00 44.26 2.01
1801 1845 5.344743 AATCGAACAGCTCAAAGGAGATA 57.655 39.130 0.00 0.00 44.26 1.98
1802 1846 3.902881 ATCGAACAGCTCAAAGGAGAT 57.097 42.857 0.00 0.00 44.26 2.75
1829 1874 4.497291 AGCGTAGGGGATTTATGTTTCA 57.503 40.909 0.00 0.00 0.00 2.69
1831 1876 5.258051 TCAAAGCGTAGGGGATTTATGTTT 58.742 37.500 0.00 0.00 0.00 2.83
1836 1881 3.118038 AGCATCAAAGCGTAGGGGATTTA 60.118 43.478 0.00 0.00 40.15 1.40
1842 1887 0.179111 TCGAGCATCAAAGCGTAGGG 60.179 55.000 0.00 0.00 40.15 3.53
1849 1894 3.004106 GGGGATTCATTCGAGCATCAAAG 59.996 47.826 0.00 0.00 33.17 2.77
1852 1897 1.770658 AGGGGATTCATTCGAGCATCA 59.229 47.619 0.00 0.00 33.17 3.07
1860 1905 6.378280 ACACAGAAATTGTAGGGGATTCATTC 59.622 38.462 0.00 0.00 38.16 2.67
1861 1906 6.256053 ACACAGAAATTGTAGGGGATTCATT 58.744 36.000 0.00 0.00 38.16 2.57
1862 1907 5.831103 ACACAGAAATTGTAGGGGATTCAT 58.169 37.500 0.00 0.00 38.16 2.57
1866 1911 5.245977 CCAAAACACAGAAATTGTAGGGGAT 59.754 40.000 0.00 0.00 38.16 3.85
1867 1912 4.586841 CCAAAACACAGAAATTGTAGGGGA 59.413 41.667 0.00 0.00 38.16 4.81
1868 1913 4.343814 ACCAAAACACAGAAATTGTAGGGG 59.656 41.667 0.00 0.00 38.16 4.79
1870 1915 6.391227 AGACCAAAACACAGAAATTGTAGG 57.609 37.500 0.00 0.00 38.16 3.18
1872 1917 6.385649 GGAGACCAAAACACAGAAATTGTA 57.614 37.500 0.00 0.00 38.16 2.41
1893 1943 5.769662 CGATGGATTCATTTTTATGAGGGGA 59.230 40.000 0.00 0.00 32.98 4.81
1894 1944 5.047802 CCGATGGATTCATTTTTATGAGGGG 60.048 44.000 0.00 0.00 32.98 4.79
1895 1945 5.565439 GCCGATGGATTCATTTTTATGAGGG 60.565 44.000 0.00 0.00 32.98 4.30
1896 1946 5.464168 GCCGATGGATTCATTTTTATGAGG 58.536 41.667 0.00 0.00 32.98 3.86
1897 1947 5.009911 TGGCCGATGGATTCATTTTTATGAG 59.990 40.000 0.00 0.00 32.98 2.90
1902 1952 3.364549 TCTGGCCGATGGATTCATTTTT 58.635 40.909 0.00 0.00 32.98 1.94
1907 1957 0.178767 CACTCTGGCCGATGGATTCA 59.821 55.000 0.00 0.00 0.00 2.57
1908 1958 0.465705 TCACTCTGGCCGATGGATTC 59.534 55.000 0.00 0.00 0.00 2.52
1926 1976 1.442769 TCACGCAGCAAGAGGAATTC 58.557 50.000 0.00 0.00 0.00 2.17
1927 1977 2.119801 ATCACGCAGCAAGAGGAATT 57.880 45.000 0.00 0.00 0.00 2.17
1928 1978 2.119801 AATCACGCAGCAAGAGGAAT 57.880 45.000 0.00 0.00 0.00 3.01
1929 1979 1.536766 CAAATCACGCAGCAAGAGGAA 59.463 47.619 0.00 0.00 0.00 3.36
1930 1980 1.159285 CAAATCACGCAGCAAGAGGA 58.841 50.000 0.00 0.00 0.00 3.71
1931 1981 1.159285 TCAAATCACGCAGCAAGAGG 58.841 50.000 0.00 0.00 0.00 3.69
1932 1982 3.482722 AATCAAATCACGCAGCAAGAG 57.517 42.857 0.00 0.00 0.00 2.85
1933 1983 3.567530 CAAATCAAATCACGCAGCAAGA 58.432 40.909 0.00 0.00 0.00 3.02
1934 1984 2.664568 CCAAATCAAATCACGCAGCAAG 59.335 45.455 0.00 0.00 0.00 4.01
1935 1985 2.609984 CCCAAATCAAATCACGCAGCAA 60.610 45.455 0.00 0.00 0.00 3.91
1936 1986 1.067706 CCCAAATCAAATCACGCAGCA 60.068 47.619 0.00 0.00 0.00 4.41
1937 1987 1.632422 CCCAAATCAAATCACGCAGC 58.368 50.000 0.00 0.00 0.00 5.25
1938 1988 1.135024 CCCCCAAATCAAATCACGCAG 60.135 52.381 0.00 0.00 0.00 5.18
1939 1989 0.894141 CCCCCAAATCAAATCACGCA 59.106 50.000 0.00 0.00 0.00 5.24
1940 1990 1.181786 TCCCCCAAATCAAATCACGC 58.818 50.000 0.00 0.00 0.00 5.34
1941 1991 3.951775 TTTCCCCCAAATCAAATCACG 57.048 42.857 0.00 0.00 0.00 4.35
1942 1992 4.967036 TGTTTTCCCCCAAATCAAATCAC 58.033 39.130 0.00 0.00 0.00 3.06
1943 1993 5.636903 TTGTTTTCCCCCAAATCAAATCA 57.363 34.783 0.00 0.00 32.86 2.57
1963 2013 6.536224 GGATGGGTATTTGCTTGAAAGATTTG 59.464 38.462 0.00 0.00 0.00 2.32
1988 2066 4.037208 ACAAGATCAAGGCAAAAGACAGTG 59.963 41.667 0.00 0.00 0.00 3.66
1993 2071 4.279169 CAGGAACAAGATCAAGGCAAAAGA 59.721 41.667 0.00 0.00 0.00 2.52
1998 2076 2.957402 ACAGGAACAAGATCAAGGCA 57.043 45.000 0.00 0.00 0.00 4.75
1999 2077 4.590850 AAAACAGGAACAAGATCAAGGC 57.409 40.909 0.00 0.00 0.00 4.35
2042 2145 1.003580 ACAATCCAACAGCTCATCGGT 59.996 47.619 0.00 0.00 0.00 4.69
2044 2147 1.399440 CCACAATCCAACAGCTCATCG 59.601 52.381 0.00 0.00 0.00 3.84
2050 2153 1.598701 GAGCCCCACAATCCAACAGC 61.599 60.000 0.00 0.00 0.00 4.40
2081 2184 0.327924 ATGCCGGACAGGTGATTTGA 59.672 50.000 5.05 0.00 43.70 2.69
2082 2185 0.734889 GATGCCGGACAGGTGATTTG 59.265 55.000 5.05 0.00 43.70 2.32
2085 2188 0.548031 AATGATGCCGGACAGGTGAT 59.452 50.000 5.05 0.00 43.70 3.06
2087 2190 0.392863 TGAATGATGCCGGACAGGTG 60.393 55.000 5.05 0.00 43.70 4.00
2088 2191 0.392998 GTGAATGATGCCGGACAGGT 60.393 55.000 5.05 0.00 43.70 4.00
2089 2192 0.107508 AGTGAATGATGCCGGACAGG 60.108 55.000 5.05 0.00 44.97 4.00
2090 2193 1.134580 AGAGTGAATGATGCCGGACAG 60.135 52.381 5.05 0.00 0.00 3.51
2092 2195 1.137872 AGAGAGTGAATGATGCCGGAC 59.862 52.381 5.05 0.00 0.00 4.79
2093 2196 1.489481 AGAGAGTGAATGATGCCGGA 58.511 50.000 5.05 0.00 0.00 5.14
2094 2197 2.322355 AAGAGAGTGAATGATGCCGG 57.678 50.000 0.00 0.00 0.00 6.13
2095 2198 2.611292 GGAAAGAGAGTGAATGATGCCG 59.389 50.000 0.00 0.00 0.00 5.69
2096 2199 2.611292 CGGAAAGAGAGTGAATGATGCC 59.389 50.000 0.00 0.00 0.00 4.40
2097 2200 3.525537 TCGGAAAGAGAGTGAATGATGC 58.474 45.455 0.00 0.00 0.00 3.91
2128 2231 2.541437 CGCGGAGAATCGAATGCG 59.459 61.111 0.00 5.42 36.98 4.73
2146 2249 4.036352 TGTTTAAAATGCGTCACGGAAAC 58.964 39.130 0.00 0.00 0.00 2.78
2149 2252 2.873472 AGTGTTTAAAATGCGTCACGGA 59.127 40.909 0.00 0.00 0.00 4.69
2155 2258 3.112580 GTGTGCAGTGTTTAAAATGCGT 58.887 40.909 13.50 0.00 41.58 5.24
2157 2260 5.655893 AATGTGTGCAGTGTTTAAAATGC 57.344 34.783 12.17 12.17 39.14 3.56
2184 2287 3.551259 TGGAACAGCCTTCGAATCC 57.449 52.632 0.00 1.89 37.63 3.01
2214 2318 8.095169 ACGGATATTTTTATCAGAGTATGGGAC 58.905 37.037 1.10 0.00 0.00 4.46
2216 2320 8.848474 AACGGATATTTTTATCAGAGTATGGG 57.152 34.615 1.10 0.00 0.00 4.00
2220 2324 9.760077 GGAGAAACGGATATTTTTATCAGAGTA 57.240 33.333 1.10 0.00 0.00 2.59
2221 2325 7.715686 GGGAGAAACGGATATTTTTATCAGAGT 59.284 37.037 1.10 0.00 0.00 3.24
2259 2379 2.173519 CAAAAGCAGGGATGTGGACAT 58.826 47.619 0.00 0.00 39.70 3.06
2260 2380 1.619654 CAAAAGCAGGGATGTGGACA 58.380 50.000 0.00 0.00 0.00 4.02
2261 2381 0.244721 GCAAAAGCAGGGATGTGGAC 59.755 55.000 0.00 0.00 0.00 4.02
2262 2382 0.178967 TGCAAAAGCAGGGATGTGGA 60.179 50.000 0.00 0.00 0.00 4.02
2263 2383 0.899720 ATGCAAAAGCAGGGATGTGG 59.100 50.000 0.00 0.00 0.00 4.17
2264 2384 1.546923 TGATGCAAAAGCAGGGATGTG 59.453 47.619 0.00 0.00 0.00 3.21
2265 2385 1.822990 CTGATGCAAAAGCAGGGATGT 59.177 47.619 0.00 0.00 38.71 3.06
2266 2386 2.579207 CTGATGCAAAAGCAGGGATG 57.421 50.000 0.00 0.00 38.71 3.51
2295 2415 3.435026 CCTCCACCTTGAACTCCTTTTCA 60.435 47.826 0.00 0.00 33.55 2.69
2298 2418 2.106684 GACCTCCACCTTGAACTCCTTT 59.893 50.000 0.00 0.00 0.00 3.11
2376 2496 1.282382 TTTACCTGTAGGCACCCTCC 58.718 55.000 0.00 0.00 39.32 4.30
2403 2523 5.072055 TCACAAATTGAGGAAGAGATTGCA 58.928 37.500 0.00 0.00 0.00 4.08
2423 2543 4.515567 AGAGAAATTCGGAAACTGGTTCAC 59.484 41.667 7.86 0.00 38.06 3.18
2428 2548 7.119846 ACATTAGAAGAGAAATTCGGAAACTGG 59.880 37.037 0.00 0.00 34.27 4.00
2503 2624 1.137675 CCATGAAGCCACTGATCGAGA 59.862 52.381 0.00 0.00 0.00 4.04
2506 2627 1.769098 CGCCATGAAGCCACTGATCG 61.769 60.000 0.00 0.00 0.00 3.69
2524 2645 0.105778 GGCTCTCTTCCCCAATCTCG 59.894 60.000 0.00 0.00 0.00 4.04
2536 2657 2.305095 CCAGGTCAATGGGCTCTCT 58.695 57.895 0.00 0.00 36.64 3.10
2584 2705 2.029838 AGAAGCATGACCCTTTAGCG 57.970 50.000 0.00 0.00 0.00 4.26
2595 2716 6.072286 AGGTGAAATAACAGTGAAGAAGCATG 60.072 38.462 0.00 0.00 0.00 4.06
2611 2732 7.093684 GGCAAACCCATTTAGTAAGGTGAAATA 60.094 37.037 0.00 0.00 31.45 1.40
2687 2808 6.208007 CAGTAACCACCGTATATACAGATGGA 59.792 42.308 23.91 8.36 0.00 3.41
2702 2824 1.675552 AGCAACACACAGTAACCACC 58.324 50.000 0.00 0.00 0.00 4.61
2718 2840 1.632589 TCTTCAGTCACAGCCTAGCA 58.367 50.000 0.00 0.00 0.00 3.49
2808 2930 3.575630 GCATGTCTCGTAACAGAACAGA 58.424 45.455 0.00 0.00 31.50 3.41
2901 3023 8.846211 TCAAGAAATAGGTCCTAACAAAACTTG 58.154 33.333 1.78 12.09 0.00 3.16
2905 3027 8.792633 CATGTCAAGAAATAGGTCCTAACAAAA 58.207 33.333 1.78 0.00 0.00 2.44
2906 3028 7.094377 GCATGTCAAGAAATAGGTCCTAACAAA 60.094 37.037 1.78 0.00 0.00 2.83
2952 3189 6.992123 TGCAATCAGTTGTCTCTTTCTCTAAA 59.008 34.615 0.00 0.00 37.65 1.85
3084 3441 1.400846 GCACATGCCATGTCTCAGAAG 59.599 52.381 7.51 0.00 42.70 2.85
3156 3513 2.983592 CAAACCGGGTGCCCTGTC 60.984 66.667 6.32 0.00 32.32 3.51
3161 3518 0.252197 ACTATCTCAAACCGGGTGCC 59.748 55.000 6.32 0.00 0.00 5.01
3313 3797 1.996292 TAACAGCTAGAGTGCTTGCG 58.004 50.000 0.00 0.00 45.63 4.85
3413 3900 4.618927 CGGGTGTCAGAGGTAACGAATTTA 60.619 45.833 0.00 0.00 46.39 1.40
3422 3910 2.614481 GCAAAATCGGGTGTCAGAGGTA 60.614 50.000 0.00 0.00 0.00 3.08
3566 4054 0.883833 CCTCCGAGCACAGCAATTTT 59.116 50.000 0.00 0.00 0.00 1.82
3570 4058 0.603707 CTTTCCTCCGAGCACAGCAA 60.604 55.000 0.00 0.00 0.00 3.91
3599 4087 0.326927 AGGTTCCCATAACACGGGTG 59.673 55.000 0.00 0.00 44.81 4.61
3617 4105 5.326200 AGACTATCGACACTAACCCAAAG 57.674 43.478 0.00 0.00 0.00 2.77
3620 4108 5.733620 AAAAGACTATCGACACTAACCCA 57.266 39.130 0.00 0.00 0.00 4.51
3650 4138 6.543831 AGATATACAACCTTTTCTGCATCACC 59.456 38.462 0.00 0.00 0.00 4.02
3670 4158 8.462016 GCAAAAGGTTCAGTCATAACAAGATAT 58.538 33.333 0.00 0.00 0.00 1.63
3679 4169 7.759489 ACATAAAGCAAAAGGTTCAGTCATA 57.241 32.000 0.00 0.00 0.00 2.15
3793 4284 8.415950 AATCTACAGGAGATCTACCAGTTATG 57.584 38.462 0.00 0.00 44.68 1.90
3856 4347 8.650143 TGAAAAGAAACTAATAGAAATGGGCT 57.350 30.769 0.00 0.00 0.00 5.19
3865 4357 9.273016 TCCACAGTTCTGAAAAGAAACTAATAG 57.727 33.333 6.83 0.00 0.00 1.73
3868 4360 6.542370 CCTCCACAGTTCTGAAAAGAAACTAA 59.458 38.462 6.83 0.00 0.00 2.24
3908 4401 8.143835 AGTTCACCTGGAAAATACAAGAATTTG 58.856 33.333 0.00 0.00 37.23 2.32
3981 4474 2.526873 AGCTTGGGGTCGACCACT 60.527 61.111 35.49 20.31 41.03 4.00
3984 4477 4.097361 GGGAGCTTGGGGTCGACC 62.097 72.222 27.04 27.04 40.51 4.79
4023 4516 1.449246 CAGAAGAGCCCGCTTCAGG 60.449 63.158 13.00 2.81 45.21 3.86
4145 4641 2.957006 GGTTGCCGAGATAGTAGGAAGA 59.043 50.000 0.00 0.00 0.00 2.87
4179 4679 3.663025 TCACTGATGTTGAGCGAATGAA 58.337 40.909 0.00 0.00 0.00 2.57
4200 4700 5.180117 GCAGTTGACAATGTGAGTAACTGAT 59.820 40.000 22.18 0.00 44.59 2.90
4272 4772 2.100418 CTCCATCGAGCTTGATCTGTCA 59.900 50.000 13.91 0.00 0.00 3.58
4281 4781 0.399091 TCCCATCCTCCATCGAGCTT 60.399 55.000 0.00 0.00 34.49 3.74
4296 4796 4.399395 CGCTTGCTCAGGCTCCCA 62.399 66.667 2.60 0.00 39.59 4.37
4345 4845 0.992802 GCATCGTCGTTCTTCTGTCC 59.007 55.000 0.00 0.00 0.00 4.02
4347 4847 0.732880 CGGCATCGTCGTTCTTCTGT 60.733 55.000 0.00 0.00 0.00 3.41
4350 4850 1.743855 GCTCGGCATCGTCGTTCTTC 61.744 60.000 0.00 0.00 37.69 2.87
4368 4871 4.241555 AGATCATGTCCCGGCGGC 62.242 66.667 23.20 8.77 0.00 6.53
4394 4897 1.153289 CAAGAGGCAGTCCATCCGG 60.153 63.158 0.00 0.00 33.74 5.14
4408 4912 7.148523 CCATACGTACGTACATATCTAGCAAGA 60.149 40.741 28.99 4.53 32.79 3.02
4432 4937 6.665680 ACATGCTTGGTTAATTAATGGTACCA 59.334 34.615 18.99 18.99 37.12 3.25
4612 5419 0.617413 AGGAGAACACCATCAGCCTG 59.383 55.000 0.00 0.00 0.00 4.85
4613 5420 0.908198 GAGGAGAACACCATCAGCCT 59.092 55.000 0.00 0.00 0.00 4.58
4619 5426 2.975489 ACAAGTCAGAGGAGAACACCAT 59.025 45.455 0.00 0.00 0.00 3.55
4622 5429 3.068873 AGTCACAAGTCAGAGGAGAACAC 59.931 47.826 0.00 0.00 0.00 3.32
4625 5432 3.706594 ACAAGTCACAAGTCAGAGGAGAA 59.293 43.478 0.00 0.00 0.00 2.87
4629 5436 3.126831 GTCACAAGTCACAAGTCAGAGG 58.873 50.000 0.00 0.00 0.00 3.69
4630 5437 4.052159 AGTCACAAGTCACAAGTCAGAG 57.948 45.455 0.00 0.00 0.00 3.35
4632 5439 5.005779 GTGTTAGTCACAAGTCACAAGTCAG 59.994 44.000 0.00 0.00 45.51 3.51
4634 5441 5.391060 GTGTTAGTCACAAGTCACAAGTC 57.609 43.478 0.00 0.00 45.51 3.01
4668 5488 5.049129 GGTTATCATTAAGACTGCCATGAGC 60.049 44.000 0.00 0.00 44.14 4.26
4674 5494 4.781934 AGTGGGTTATCATTAAGACTGCC 58.218 43.478 0.00 0.00 0.00 4.85
4750 5570 4.334759 CAGGAATCATAAGACCAAGTGCTG 59.665 45.833 0.00 0.00 0.00 4.41
4754 5574 3.266772 TGCCAGGAATCATAAGACCAAGT 59.733 43.478 0.00 0.00 0.00 3.16
4759 5579 3.118261 TCCAGTGCCAGGAATCATAAGAC 60.118 47.826 0.00 0.00 30.71 3.01
4792 5613 2.996631 AGAACAAGGAGGCATGATCAC 58.003 47.619 0.00 0.00 0.00 3.06
4802 5623 0.879765 CCAGCAGCAAGAACAAGGAG 59.120 55.000 0.00 0.00 0.00 3.69
4804 5625 1.288127 GCCAGCAGCAAGAACAAGG 59.712 57.895 0.00 0.00 42.97 3.61
4805 5626 4.959446 GCCAGCAGCAAGAACAAG 57.041 55.556 0.00 0.00 42.97 3.16
4922 5969 1.270550 ACGGCCAAAAAGAGCATTCAG 59.729 47.619 2.24 0.00 0.00 3.02
4962 6014 4.154918 CCCAGATGCTGTTTTTACTGAGTC 59.845 45.833 0.00 0.00 0.00 3.36
4963 6015 4.074970 CCCAGATGCTGTTTTTACTGAGT 58.925 43.478 0.00 0.00 0.00 3.41
4970 6022 0.971386 CTGGCCCAGATGCTGTTTTT 59.029 50.000 4.15 0.00 32.44 1.94
4971 6023 0.178953 ACTGGCCCAGATGCTGTTTT 60.179 50.000 19.90 0.00 35.18 2.43
4981 6033 2.046892 CGACAAGGACTGGCCCAG 60.047 66.667 9.83 9.83 37.37 4.45
4988 6044 1.289380 GACGAAGCCGACAAGGACT 59.711 57.895 0.00 0.00 45.00 3.85
4990 6046 1.906824 AGGACGAAGCCGACAAGGA 60.907 57.895 0.00 0.00 45.00 3.36
5019 6075 3.719471 TGAACGCGGTACACGATCAGG 62.719 57.143 12.47 0.00 40.46 3.86
5020 6076 0.455464 TGAACGCGGTACACGATCAG 60.455 55.000 12.47 3.30 40.46 2.90
5021 6077 1.580437 TGAACGCGGTACACGATCA 59.420 52.632 12.47 13.84 42.85 2.92
5026 6082 2.097142 AGTAGAGATGAACGCGGTACAC 59.903 50.000 12.47 0.00 0.00 2.90
5027 6083 2.362736 AGTAGAGATGAACGCGGTACA 58.637 47.619 12.47 7.90 0.00 2.90
5028 6084 3.606615 GCTAGTAGAGATGAACGCGGTAC 60.607 52.174 12.47 0.00 0.00 3.34
5029 6085 2.547211 GCTAGTAGAGATGAACGCGGTA 59.453 50.000 12.47 0.00 0.00 4.02
5030 6086 1.334243 GCTAGTAGAGATGAACGCGGT 59.666 52.381 12.47 1.91 0.00 5.68
5031 6087 1.333931 TGCTAGTAGAGATGAACGCGG 59.666 52.381 12.47 0.00 0.00 6.46
5032 6088 2.603412 CCTGCTAGTAGAGATGAACGCG 60.603 54.545 9.72 3.53 0.00 6.01
5033 6089 2.619177 TCCTGCTAGTAGAGATGAACGC 59.381 50.000 9.72 0.00 0.00 4.84
5034 6090 3.880490 ACTCCTGCTAGTAGAGATGAACG 59.120 47.826 9.72 0.00 0.00 3.95
5035 6091 5.239963 GGTACTCCTGCTAGTAGAGATGAAC 59.760 48.000 9.72 0.31 32.69 3.18
5036 6092 5.132985 AGGTACTCCTGCTAGTAGAGATGAA 59.867 44.000 9.72 0.00 43.33 2.57
5037 6093 4.661240 AGGTACTCCTGCTAGTAGAGATGA 59.339 45.833 9.72 0.00 43.33 2.92
5038 6094 4.980573 AGGTACTCCTGCTAGTAGAGATG 58.019 47.826 9.72 0.00 43.33 2.90
5039 6095 5.656549 AAGGTACTCCTGCTAGTAGAGAT 57.343 43.478 9.72 0.00 44.35 2.75
5040 6096 5.453866 AAAGGTACTCCTGCTAGTAGAGA 57.546 43.478 9.72 4.35 44.35 3.10
5041 6097 6.532988 AAAAAGGTACTCCTGCTAGTAGAG 57.467 41.667 9.72 6.82 44.35 2.43
5068 6124 7.964293 ATAGAACTCCTATCCCATAAACTGGAT 59.036 37.037 0.00 0.00 39.41 3.41
5069 6125 7.313731 ATAGAACTCCTATCCCATAAACTGGA 58.686 38.462 0.00 0.00 39.41 3.86
5070 6126 5.896073 AGAACTCCTATCCCATAAACTGG 57.104 43.478 0.00 0.00 45.51 4.00
5071 6127 9.853177 AAAATAGAACTCCTATCCCATAAACTG 57.147 33.333 0.00 0.00 37.09 3.16
5073 6129 9.286170 GGAAAATAGAACTCCTATCCCATAAAC 57.714 37.037 0.00 0.00 37.09 2.01
5074 6130 9.237706 AGGAAAATAGAACTCCTATCCCATAAA 57.762 33.333 0.00 0.00 37.83 1.40
5075 6131 8.660435 CAGGAAAATAGAACTCCTATCCCATAA 58.340 37.037 0.00 0.00 37.49 1.90
5076 6132 7.256691 GCAGGAAAATAGAACTCCTATCCCATA 60.257 40.741 0.00 0.00 37.49 2.74
5077 6133 6.466470 GCAGGAAAATAGAACTCCTATCCCAT 60.466 42.308 0.00 0.00 37.49 4.00
5078 6134 5.163195 GCAGGAAAATAGAACTCCTATCCCA 60.163 44.000 0.00 0.00 37.49 4.37
5079 6135 5.309638 GCAGGAAAATAGAACTCCTATCCC 58.690 45.833 0.00 0.00 37.49 3.85
5080 6136 5.309638 GGCAGGAAAATAGAACTCCTATCC 58.690 45.833 0.00 0.00 37.49 2.59
5081 6137 4.991687 CGGCAGGAAAATAGAACTCCTATC 59.008 45.833 0.00 0.00 37.49 2.08
5082 6138 4.202367 CCGGCAGGAAAATAGAACTCCTAT 60.202 45.833 0.00 0.00 37.49 2.57
5083 6139 3.134081 CCGGCAGGAAAATAGAACTCCTA 59.866 47.826 0.00 0.00 37.49 2.94
5084 6140 2.092914 CCGGCAGGAAAATAGAACTCCT 60.093 50.000 0.00 0.00 40.33 3.69
5085 6141 2.289565 CCGGCAGGAAAATAGAACTCC 58.710 52.381 0.00 0.00 41.02 3.85
5086 6142 2.937149 GACCGGCAGGAAAATAGAACTC 59.063 50.000 10.86 0.00 41.02 3.01
5087 6143 2.304761 TGACCGGCAGGAAAATAGAACT 59.695 45.455 10.86 0.00 41.02 3.01
5088 6144 2.706890 TGACCGGCAGGAAAATAGAAC 58.293 47.619 10.86 0.00 41.02 3.01
5089 6145 3.078837 GTTGACCGGCAGGAAAATAGAA 58.921 45.455 10.86 0.00 41.02 2.10
5090 6146 2.039216 TGTTGACCGGCAGGAAAATAGA 59.961 45.455 10.86 0.00 41.02 1.98
5091 6147 2.420022 CTGTTGACCGGCAGGAAAATAG 59.580 50.000 10.86 7.23 41.02 1.73
5092 6148 2.432444 CTGTTGACCGGCAGGAAAATA 58.568 47.619 10.86 0.87 41.02 1.40
5093 6149 1.247567 CTGTTGACCGGCAGGAAAAT 58.752 50.000 10.86 0.00 41.02 1.82
5094 6150 1.452145 GCTGTTGACCGGCAGGAAAA 61.452 55.000 10.86 0.00 45.37 2.29
5095 6151 1.896660 GCTGTTGACCGGCAGGAAA 60.897 57.895 10.86 0.29 45.37 3.13
5096 6152 2.281484 GCTGTTGACCGGCAGGAA 60.281 61.111 10.86 0.00 45.37 3.36
5101 6157 1.003718 ACCTAAGCTGTTGACCGGC 60.004 57.895 0.00 0.00 46.50 6.13
5102 6158 0.034896 ACACCTAAGCTGTTGACCGG 59.965 55.000 0.00 0.00 0.00 5.28
5103 6159 2.607187 CTACACCTAAGCTGTTGACCG 58.393 52.381 0.00 0.00 0.00 4.79
5104 6160 2.347731 GCTACACCTAAGCTGTTGACC 58.652 52.381 0.00 0.00 37.01 4.02
5112 6168 2.902065 GCAACAAGCTACACCTAAGC 57.098 50.000 0.00 0.00 41.15 3.09
5123 6179 3.315191 TCAGTCCTTACAAAGCAACAAGC 59.685 43.478 0.00 0.00 46.19 4.01
5124 6180 4.576463 AGTCAGTCCTTACAAAGCAACAAG 59.424 41.667 0.00 0.00 0.00 3.16
5125 6181 4.523083 AGTCAGTCCTTACAAAGCAACAA 58.477 39.130 0.00 0.00 0.00 2.83
5126 6182 4.150897 AGTCAGTCCTTACAAAGCAACA 57.849 40.909 0.00 0.00 0.00 3.33
5127 6183 5.054477 TGTAGTCAGTCCTTACAAAGCAAC 58.946 41.667 0.00 0.00 0.00 4.17
5128 6184 5.284861 TGTAGTCAGTCCTTACAAAGCAA 57.715 39.130 0.00 0.00 0.00 3.91
5129 6185 4.948341 TGTAGTCAGTCCTTACAAAGCA 57.052 40.909 0.00 0.00 0.00 3.91
5130 6186 5.238583 ACATGTAGTCAGTCCTTACAAAGC 58.761 41.667 0.00 0.00 0.00 3.51
5131 6187 6.952935 GACATGTAGTCAGTCCTTACAAAG 57.047 41.667 0.00 0.00 46.77 2.77
5169 6225 8.987890 CCAATCGACTGAACCAAAATTTAATTT 58.012 29.630 0.00 0.00 0.00 1.82
5170 6226 7.117667 GCCAATCGACTGAACCAAAATTTAATT 59.882 33.333 0.00 0.00 0.00 1.40
5171 6227 6.589907 GCCAATCGACTGAACCAAAATTTAAT 59.410 34.615 0.00 0.00 0.00 1.40
5172 6228 5.923684 GCCAATCGACTGAACCAAAATTTAA 59.076 36.000 0.00 0.00 0.00 1.52
5173 6229 5.465935 GCCAATCGACTGAACCAAAATTTA 58.534 37.500 0.00 0.00 0.00 1.40
5174 6230 4.306600 GCCAATCGACTGAACCAAAATTT 58.693 39.130 0.00 0.00 0.00 1.82
5175 6231 3.306019 GGCCAATCGACTGAACCAAAATT 60.306 43.478 0.00 0.00 0.00 1.82
5176 6232 2.231235 GGCCAATCGACTGAACCAAAAT 59.769 45.455 0.00 0.00 0.00 1.82
5177 6233 1.611491 GGCCAATCGACTGAACCAAAA 59.389 47.619 0.00 0.00 0.00 2.44
5178 6234 1.243902 GGCCAATCGACTGAACCAAA 58.756 50.000 0.00 0.00 0.00 3.28
5179 6235 0.608035 GGGCCAATCGACTGAACCAA 60.608 55.000 4.39 0.00 0.00 3.67
5180 6236 1.002624 GGGCCAATCGACTGAACCA 60.003 57.895 4.39 0.00 0.00 3.67
5181 6237 1.749258 GGGGCCAATCGACTGAACC 60.749 63.158 4.39 0.00 0.00 3.62
5182 6238 1.026718 CAGGGGCCAATCGACTGAAC 61.027 60.000 4.39 0.00 0.00 3.18
5183 6239 1.299648 CAGGGGCCAATCGACTGAA 59.700 57.895 4.39 0.00 0.00 3.02
5184 6240 2.669133 CCAGGGGCCAATCGACTGA 61.669 63.158 4.39 0.00 0.00 3.41
5185 6241 2.124570 CCAGGGGCCAATCGACTG 60.125 66.667 4.39 1.54 0.00 3.51
5186 6242 3.411517 CCCAGGGGCCAATCGACT 61.412 66.667 4.39 0.00 0.00 4.18
5196 6252 2.681064 CCAACACATGCCCAGGGG 60.681 66.667 7.91 3.48 38.57 4.79
5197 6253 3.384532 GCCAACACATGCCCAGGG 61.385 66.667 0.00 0.00 0.00 4.45
5198 6254 2.283388 AGCCAACACATGCCCAGG 60.283 61.111 0.00 0.00 0.00 4.45
5199 6255 2.345760 GGAGCCAACACATGCCCAG 61.346 63.158 0.00 0.00 0.00 4.45
5200 6256 2.283101 GGAGCCAACACATGCCCA 60.283 61.111 0.00 0.00 0.00 5.36
5201 6257 3.070576 GGGAGCCAACACATGCCC 61.071 66.667 0.00 0.00 0.00 5.36
5202 6258 2.036256 AGGGAGCCAACACATGCC 59.964 61.111 0.00 0.00 0.00 4.40
5203 6259 2.998279 GCAGGGAGCCAACACATGC 61.998 63.158 0.00 0.00 37.23 4.06
5204 6260 3.281240 GCAGGGAGCCAACACATG 58.719 61.111 0.00 0.00 37.23 3.21
5213 6269 2.124942 GTAGCTGTGGCAGGGAGC 60.125 66.667 0.00 5.20 41.70 4.70
5214 6270 1.320344 TACGTAGCTGTGGCAGGGAG 61.320 60.000 0.00 0.00 41.70 4.30
5215 6271 1.304630 TACGTAGCTGTGGCAGGGA 60.305 57.895 0.00 0.00 41.70 4.20
5216 6272 1.153628 GTACGTAGCTGTGGCAGGG 60.154 63.158 0.00 0.00 41.70 4.45
5217 6273 1.516386 CGTACGTAGCTGTGGCAGG 60.516 63.158 7.22 0.00 41.70 4.85
5218 6274 0.797249 GTCGTACGTAGCTGTGGCAG 60.797 60.000 16.05 0.00 41.70 4.85
5219 6275 1.210931 GTCGTACGTAGCTGTGGCA 59.789 57.895 16.05 0.00 41.70 4.92
5220 6276 0.179145 ATGTCGTACGTAGCTGTGGC 60.179 55.000 16.05 0.00 39.06 5.01
5221 6277 2.096335 TGTATGTCGTACGTAGCTGTGG 59.904 50.000 16.05 0.00 36.01 4.17
5222 6278 3.063045 TCTGTATGTCGTACGTAGCTGTG 59.937 47.826 16.05 2.98 36.01 3.66
5223 6279 3.264947 TCTGTATGTCGTACGTAGCTGT 58.735 45.455 16.05 0.00 36.01 4.40
5224 6280 3.938778 TCTGTATGTCGTACGTAGCTG 57.061 47.619 16.05 6.84 36.01 4.24
5225 6281 5.333952 GCTAATCTGTATGTCGTACGTAGCT 60.334 44.000 16.05 0.00 36.01 3.32
5226 6282 4.845060 GCTAATCTGTATGTCGTACGTAGC 59.155 45.833 16.05 12.55 36.01 3.58
5227 6283 5.982324 TGCTAATCTGTATGTCGTACGTAG 58.018 41.667 16.05 6.52 36.01 3.51
5228 6284 5.989551 TGCTAATCTGTATGTCGTACGTA 57.010 39.130 16.05 6.30 36.01 3.57
5229 6285 4.888038 TGCTAATCTGTATGTCGTACGT 57.112 40.909 16.05 0.00 36.01 3.57
5230 6286 6.749216 AATTGCTAATCTGTATGTCGTACG 57.251 37.500 9.53 9.53 36.01 3.67
5231 6287 8.126871 TCAAATTGCTAATCTGTATGTCGTAC 57.873 34.615 0.00 0.00 0.00 3.67
5232 6288 8.887036 ATCAAATTGCTAATCTGTATGTCGTA 57.113 30.769 0.00 0.00 0.00 3.43
5233 6289 7.792374 ATCAAATTGCTAATCTGTATGTCGT 57.208 32.000 0.00 0.00 0.00 4.34
5234 6290 8.337532 TCAATCAAATTGCTAATCTGTATGTCG 58.662 33.333 0.00 0.00 40.05 4.35
5242 6298 9.538508 GCCTAATTTCAATCAAATTGCTAATCT 57.461 29.630 3.12 0.00 43.38 2.40
5243 6299 9.316730 TGCCTAATTTCAATCAAATTGCTAATC 57.683 29.630 3.12 0.00 43.38 1.75
5244 6300 9.321562 CTGCCTAATTTCAATCAAATTGCTAAT 57.678 29.630 3.12 0.00 43.38 1.73
5245 6301 7.278424 GCTGCCTAATTTCAATCAAATTGCTAA 59.722 33.333 3.12 0.00 43.38 3.09
5246 6302 6.757947 GCTGCCTAATTTCAATCAAATTGCTA 59.242 34.615 3.12 0.00 43.38 3.49
5247 6303 5.583457 GCTGCCTAATTTCAATCAAATTGCT 59.417 36.000 3.12 0.00 43.38 3.91
5248 6304 5.352016 TGCTGCCTAATTTCAATCAAATTGC 59.648 36.000 0.00 0.50 43.38 3.56
5249 6305 6.971527 TGCTGCCTAATTTCAATCAAATTG 57.028 33.333 0.00 0.00 43.38 2.32
5250 6306 6.037830 GCATGCTGCCTAATTTCAATCAAATT 59.962 34.615 11.37 0.00 41.29 1.82
5251 6307 5.526111 GCATGCTGCCTAATTTCAATCAAAT 59.474 36.000 11.37 0.00 37.42 2.32
5252 6308 4.871557 GCATGCTGCCTAATTTCAATCAAA 59.128 37.500 11.37 0.00 37.42 2.69
5253 6309 4.081586 TGCATGCTGCCTAATTTCAATCAA 60.082 37.500 20.33 0.00 44.23 2.57
5254 6310 3.447944 TGCATGCTGCCTAATTTCAATCA 59.552 39.130 20.33 0.00 44.23 2.57
5255 6311 4.049186 CTGCATGCTGCCTAATTTCAATC 58.951 43.478 20.33 0.00 44.23 2.67
5256 6312 3.181469 CCTGCATGCTGCCTAATTTCAAT 60.181 43.478 20.33 0.00 44.23 2.57
5257 6313 2.166870 CCTGCATGCTGCCTAATTTCAA 59.833 45.455 20.33 0.00 44.23 2.69
5258 6314 1.752498 CCTGCATGCTGCCTAATTTCA 59.248 47.619 20.33 0.00 44.23 2.69
5259 6315 1.753073 ACCTGCATGCTGCCTAATTTC 59.247 47.619 20.33 0.00 44.23 2.17
5260 6316 1.479323 CACCTGCATGCTGCCTAATTT 59.521 47.619 20.33 0.00 44.23 1.82
5261 6317 1.108776 CACCTGCATGCTGCCTAATT 58.891 50.000 20.33 0.00 44.23 1.40
5262 6318 1.389609 GCACCTGCATGCTGCCTAAT 61.390 55.000 20.33 0.00 44.23 1.73
5263 6319 2.048023 GCACCTGCATGCTGCCTAA 61.048 57.895 20.33 0.00 44.23 2.69
5264 6320 2.438975 GCACCTGCATGCTGCCTA 60.439 61.111 20.33 0.00 44.23 3.93
5274 6330 2.483889 GGGAGTAGATTAGTGCACCTGC 60.484 54.545 14.63 7.02 42.50 4.85
5275 6331 3.034635 AGGGAGTAGATTAGTGCACCTG 58.965 50.000 14.63 0.00 0.00 4.00
5276 6332 3.301274 GAGGGAGTAGATTAGTGCACCT 58.699 50.000 14.63 5.86 0.00 4.00
5277 6333 2.365941 GGAGGGAGTAGATTAGTGCACC 59.634 54.545 14.63 0.00 0.00 5.01
5278 6334 2.034812 CGGAGGGAGTAGATTAGTGCAC 59.965 54.545 9.40 9.40 0.00 4.57
5279 6335 2.307768 CGGAGGGAGTAGATTAGTGCA 58.692 52.381 0.00 0.00 0.00 4.57
5280 6336 2.308690 ACGGAGGGAGTAGATTAGTGC 58.691 52.381 0.00 0.00 0.00 4.40
5281 6337 3.318557 GGAACGGAGGGAGTAGATTAGTG 59.681 52.174 0.00 0.00 0.00 2.74
5282 6338 3.204831 AGGAACGGAGGGAGTAGATTAGT 59.795 47.826 0.00 0.00 0.00 2.24
5283 6339 3.834938 AGGAACGGAGGGAGTAGATTAG 58.165 50.000 0.00 0.00 0.00 1.73
5284 6340 3.967467 AGGAACGGAGGGAGTAGATTA 57.033 47.619 0.00 0.00 0.00 1.75
5285 6341 2.850695 AGGAACGGAGGGAGTAGATT 57.149 50.000 0.00 0.00 0.00 2.40
5286 6342 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
5287 6343 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
5288 6344 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
5289 6345 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
5290 6346 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
5291 6347 6.295180 GGACTTATATTTAGGAACGGAGGGAG 60.295 46.154 0.00 0.00 0.00 4.30
5292 6348 5.541484 GGACTTATATTTAGGAACGGAGGGA 59.459 44.000 0.00 0.00 0.00 4.20
5293 6349 5.543020 AGGACTTATATTTAGGAACGGAGGG 59.457 44.000 0.00 0.00 0.00 4.30
5294 6350 6.667558 AGGACTTATATTTAGGAACGGAGG 57.332 41.667 0.00 0.00 0.00 4.30
5295 6351 8.959705 AAAAGGACTTATATTTAGGAACGGAG 57.040 34.615 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.