Multiple sequence alignment - TraesCS5A01G493600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G493600 chr5A 100.000 9433 0 0 1 9433 662417400 662407968 0.000000e+00 17420.0
1 TraesCS5A01G493600 chr5A 86.295 664 69 12 7343 7996 426404425 426405076 0.000000e+00 702.0
2 TraesCS5A01G493600 chr4B 95.010 5070 211 20 653 5698 609312919 609317970 0.000000e+00 7923.0
3 TraesCS5A01G493600 chr4B 84.961 645 38 18 8831 9433 609318890 609319517 4.870000e-167 599.0
4 TraesCS5A01G493600 chr4B 88.525 366 32 6 7996 8352 609318161 609318525 1.450000e-117 435.0
5 TraesCS5A01G493600 chr4B 91.561 237 20 0 420 656 609312643 609312879 2.540000e-85 327.0
6 TraesCS5A01G493600 chr4B 88.583 254 23 6 1 252 609311565 609311814 4.280000e-78 303.0
7 TraesCS5A01G493600 chr4B 83.918 342 22 7 8343 8676 609318581 609318897 7.160000e-76 296.0
8 TraesCS5A01G493600 chr4D 91.612 3076 193 36 2651 5698 480972786 480975824 0.000000e+00 4191.0
9 TraesCS5A01G493600 chr4D 94.887 1506 62 5 653 2146 480970724 480972226 0.000000e+00 2340.0
10 TraesCS5A01G493600 chr4D 89.137 672 43 4 1 658 480970031 480970686 0.000000e+00 809.0
11 TraesCS5A01G493600 chr4D 88.377 499 46 9 2169 2665 480972281 480972769 2.930000e-164 590.0
12 TraesCS5A01G493600 chr4D 91.169 385 23 5 8831 9204 480976736 480977120 6.530000e-141 512.0
13 TraesCS5A01G493600 chr4D 86.228 334 21 4 8343 8676 480976435 480976743 1.170000e-88 339.0
14 TraesCS5A01G493600 chr4D 90.756 119 4 3 9202 9315 480977157 480977273 1.640000e-32 152.0
15 TraesCS5A01G493600 chr1A 92.752 2304 148 12 5700 8000 21570018 21572305 0.000000e+00 3312.0
16 TraesCS5A01G493600 chr7A 81.723 4098 597 96 996 5013 561892281 561888256 0.000000e+00 3278.0
17 TraesCS5A01G493600 chr7A 90.838 2303 174 16 5701 7999 693593883 693591614 0.000000e+00 3049.0
18 TraesCS5A01G493600 chr7A 90.487 2302 203 12 5700 7996 495955274 495957564 0.000000e+00 3024.0
19 TraesCS5A01G493600 chr7A 77.650 434 73 13 5272 5698 561887738 561887322 9.460000e-60 243.0
20 TraesCS5A01G493600 chr7A 100.000 32 0 0 8364 8395 60440664 60440695 1.020000e-04 60.2
21 TraesCS5A01G493600 chr6D 90.341 2319 192 22 5700 8002 461511675 461509373 0.000000e+00 3013.0
22 TraesCS5A01G493600 chr6D 90.382 2121 171 20 5700 7798 161144803 161142694 0.000000e+00 2756.0
23 TraesCS5A01G493600 chr6D 79.545 132 25 2 1550 1680 5198274 5198144 1.010000e-14 93.5
24 TraesCS5A01G493600 chr3D 90.236 2335 177 23 5700 7996 463076962 463079283 0.000000e+00 3001.0
25 TraesCS5A01G493600 chr3D 85.075 67 7 3 8213 8278 424493719 424493655 2.200000e-06 65.8
26 TraesCS5A01G493600 chr5D 89.332 2334 198 19 5700 7999 220855154 220857470 0.000000e+00 2883.0
27 TraesCS5A01G493600 chr5D 88.989 2334 203 30 5700 7996 525173155 525175471 0.000000e+00 2837.0
28 TraesCS5A01G493600 chr5D 82.857 105 14 3 8251 8353 544277347 544277245 3.630000e-14 91.6
29 TraesCS5A01G493600 chr7D 88.082 2341 195 49 5700 7996 6797265 6794965 0.000000e+00 2700.0
30 TraesCS5A01G493600 chr3A 87.981 2338 214 28 5700 7998 49816939 49814630 0.000000e+00 2699.0
31 TraesCS5A01G493600 chr3A 89.344 1342 110 12 6667 7998 90112479 90113797 0.000000e+00 1655.0
32 TraesCS5A01G493600 chr3A 78.261 184 32 6 8178 8353 493745550 493745367 2.780000e-20 111.0
33 TraesCS5A01G493600 chr3A 100.000 32 0 0 8364 8395 228530409 228530440 1.020000e-04 60.2
34 TraesCS5A01G493600 chr3A 100.000 32 0 0 8364 8395 372948158 372948127 1.020000e-04 60.2
35 TraesCS5A01G493600 chr6A 87.441 2325 239 31 5701 7996 22758060 22760360 0.000000e+00 2627.0
36 TraesCS5A01G493600 chr6A 100.000 32 0 0 8364 8395 405291862 405291831 1.020000e-04 60.2
37 TraesCS5A01G493600 chr6A 100.000 32 0 0 8364 8395 533858844 533858813 1.020000e-04 60.2
38 TraesCS5A01G493600 chr6A 100.000 32 0 0 8364 8395 555000150 555000119 1.020000e-04 60.2
39 TraesCS5A01G493600 chr2A 88.055 2026 197 19 5976 7998 216177963 216179946 0.000000e+00 2359.0
40 TraesCS5A01G493600 chr2A 89.136 359 36 3 7638 7996 625016068 625016423 2.420000e-120 444.0
41 TraesCS5A01G493600 chr2A 89.046 283 29 2 5700 5980 216173502 216173784 5.420000e-92 350.0
42 TraesCS5A01G493600 chr2D 83.738 412 52 13 5700 6097 54726770 54726360 8.940000e-100 375.0
43 TraesCS5A01G493600 chr1B 73.495 1113 239 33 3078 4165 462898 461817 4.160000e-98 370.0
44 TraesCS5A01G493600 chr7B 85.479 365 38 13 5700 6052 554130250 554130611 5.380000e-97 366.0
45 TraesCS5A01G493600 chr1D 72.861 1087 251 23 3064 4131 2686259 2687320 5.460000e-87 333.0
46 TraesCS5A01G493600 chr3B 82.178 101 12 5 8187 8281 486633733 486633633 2.180000e-11 82.4
47 TraesCS5A01G493600 chr6B 88.679 53 6 0 1603 1655 103671254 103671202 2.200000e-06 65.8
48 TraesCS5A01G493600 chrUn 92.683 41 3 0 1604 1644 271937210 271937250 1.020000e-04 60.2
49 TraesCS5A01G493600 chrUn 92.683 41 3 0 1604 1644 316617533 316617493 1.020000e-04 60.2
50 TraesCS5A01G493600 chr4A 100.000 32 0 0 8364 8395 360335583 360335552 1.020000e-04 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G493600 chr5A 662407968 662417400 9432 True 17420.000000 17420 100.000000 1 9433 1 chr5A.!!$R1 9432
1 TraesCS5A01G493600 chr5A 426404425 426405076 651 False 702.000000 702 86.295000 7343 7996 1 chr5A.!!$F1 653
2 TraesCS5A01G493600 chr4B 609311565 609319517 7952 False 1647.166667 7923 88.759667 1 9433 6 chr4B.!!$F1 9432
3 TraesCS5A01G493600 chr4D 480970031 480977273 7242 False 1276.142857 4191 90.309429 1 9315 7 chr4D.!!$F1 9314
4 TraesCS5A01G493600 chr1A 21570018 21572305 2287 False 3312.000000 3312 92.752000 5700 8000 1 chr1A.!!$F1 2300
5 TraesCS5A01G493600 chr7A 693591614 693593883 2269 True 3049.000000 3049 90.838000 5701 7999 1 chr7A.!!$R1 2298
6 TraesCS5A01G493600 chr7A 495955274 495957564 2290 False 3024.000000 3024 90.487000 5700 7996 1 chr7A.!!$F2 2296
7 TraesCS5A01G493600 chr7A 561887322 561892281 4959 True 1760.500000 3278 79.686500 996 5698 2 chr7A.!!$R2 4702
8 TraesCS5A01G493600 chr6D 461509373 461511675 2302 True 3013.000000 3013 90.341000 5700 8002 1 chr6D.!!$R3 2302
9 TraesCS5A01G493600 chr6D 161142694 161144803 2109 True 2756.000000 2756 90.382000 5700 7798 1 chr6D.!!$R2 2098
10 TraesCS5A01G493600 chr3D 463076962 463079283 2321 False 3001.000000 3001 90.236000 5700 7996 1 chr3D.!!$F1 2296
11 TraesCS5A01G493600 chr5D 220855154 220857470 2316 False 2883.000000 2883 89.332000 5700 7999 1 chr5D.!!$F1 2299
12 TraesCS5A01G493600 chr5D 525173155 525175471 2316 False 2837.000000 2837 88.989000 5700 7996 1 chr5D.!!$F2 2296
13 TraesCS5A01G493600 chr7D 6794965 6797265 2300 True 2700.000000 2700 88.082000 5700 7996 1 chr7D.!!$R1 2296
14 TraesCS5A01G493600 chr3A 49814630 49816939 2309 True 2699.000000 2699 87.981000 5700 7998 1 chr3A.!!$R1 2298
15 TraesCS5A01G493600 chr3A 90112479 90113797 1318 False 1655.000000 1655 89.344000 6667 7998 1 chr3A.!!$F1 1331
16 TraesCS5A01G493600 chr6A 22758060 22760360 2300 False 2627.000000 2627 87.441000 5701 7996 1 chr6A.!!$F1 2295
17 TraesCS5A01G493600 chr2A 216177963 216179946 1983 False 2359.000000 2359 88.055000 5976 7998 1 chr2A.!!$F2 2022
18 TraesCS5A01G493600 chr1B 461817 462898 1081 True 370.000000 370 73.495000 3078 4165 1 chr1B.!!$R1 1087
19 TraesCS5A01G493600 chr1D 2686259 2687320 1061 False 333.000000 333 72.861000 3064 4131 1 chr1D.!!$F1 1067

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 1169 0.169672 CGGCTTCCTCTTGTGCATTG 59.830 55.0 0.00 0.0 0.00 2.82 F
1281 2003 0.103572 GCACCGACGGGCTAGATAAA 59.896 55.0 20.00 0.0 36.48 1.40 F
2310 3095 0.326904 TCCTGCCCCTGTGATCATCT 60.327 55.0 0.00 0.0 0.00 2.90 F
2934 3765 2.030805 GTGGTGAAAGCCATCTGTGAAC 60.031 50.0 0.00 0.0 41.08 3.18 F
3410 4250 0.947244 AGCTTGTTGGCAGAAAGACG 59.053 50.0 13.56 0.0 34.17 4.18 F
5365 6590 0.324943 AGTGTCCCTTTGCATAGCGT 59.675 50.0 0.00 0.0 0.00 5.07 F
5935 7178 0.390124 TGCCACCGAAGAAGTACGTT 59.610 50.0 0.00 0.0 0.00 3.99 F
6853 8162 0.175760 GTACTGGGAGCGCATCAAGA 59.824 55.0 11.47 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 2313 0.170561 ATCCTCCGAAACTGACGACG 59.829 55.000 0.00 0.00 0.00 5.12 R
2962 3793 4.395231 GGGTGCAATTAGGACTTTAGTGAC 59.605 45.833 0.00 0.00 38.81 3.67 R
3410 4250 1.001974 TGGACCAGTGTGCACTATCAC 59.998 52.381 19.41 7.78 40.20 3.06 R
4601 5465 0.813610 CTCGCCCAGTGTGTTCAACA 60.814 55.000 0.00 0.00 36.04 3.33 R
5378 6603 2.612672 CTCGGTGATAGTTGTAGCTCGA 59.387 50.000 0.00 0.00 0.00 4.04 R
6481 7751 0.107993 ATGTCGGTCTCGGTCTCGTA 60.108 55.000 0.00 0.00 37.69 3.43 R
7280 8591 0.459489 TCTTGGCACCTTTGTTGCAC 59.541 50.000 0.00 0.00 0.00 4.57 R
8572 10035 0.106519 GGCATTACCTGATGTGGCCT 60.107 55.000 3.32 0.00 37.16 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 173 3.181455 TGCATCAGTACAAGAGGTGTTGT 60.181 43.478 0.00 0.00 41.98 3.32
172 177 0.865769 GTACAAGAGGTGTTGTGCCG 59.134 55.000 2.88 0.00 40.89 5.69
231 236 2.495572 GGGGGTTATCCTAGGCAGATCT 60.496 54.545 2.96 0.00 35.33 2.75
283 298 0.685097 AGGAGTGGCTTCAACGCTAA 59.315 50.000 0.00 0.00 0.00 3.09
287 302 0.444260 GTGGCTTCAACGCTAAGCTC 59.556 55.000 14.31 7.39 46.81 4.09
304 319 1.269831 GCTCCTACAAGGGCGAGTATG 60.270 57.143 0.00 0.00 35.59 2.39
306 321 3.220110 CTCCTACAAGGGCGAGTATGTA 58.780 50.000 0.00 0.00 35.59 2.29
385 400 0.460284 ATGGATGACGACCGAAGTGC 60.460 55.000 0.00 0.00 0.00 4.40
412 427 1.405526 CCGTGTGTGTCTATGGGAAGG 60.406 57.143 0.00 0.00 0.00 3.46
445 1111 0.744414 CGGGATGCGAGGAACACAAT 60.744 55.000 0.00 0.00 0.00 2.71
449 1115 3.006940 GGATGCGAGGAACACAATTACA 58.993 45.455 0.00 0.00 0.00 2.41
503 1169 0.169672 CGGCTTCCTCTTGTGCATTG 59.830 55.000 0.00 0.00 0.00 2.82
528 1194 2.645802 TGACAAGTGGTTACAACACCC 58.354 47.619 0.00 0.00 39.63 4.61
529 1195 2.026169 TGACAAGTGGTTACAACACCCA 60.026 45.455 0.00 0.00 39.63 4.51
557 1223 1.538204 GCGGATTAATGCTCGAGTCCA 60.538 52.381 15.13 4.61 0.00 4.02
622 1288 3.047877 CCGTGAGTGGTTTCCGCC 61.048 66.667 0.00 0.00 33.99 6.13
623 1289 2.030562 CGTGAGTGGTTTCCGCCT 59.969 61.111 0.00 0.00 33.99 5.52
631 1297 1.371267 GGTTTCCGCCTTGTTTCGC 60.371 57.895 0.00 0.00 0.00 4.70
641 1307 2.786564 CTTGTTTCGCGCCTTGGCTC 62.787 60.000 0.00 0.38 0.00 4.70
768 1477 4.684242 GTGCCGAATAACATGATGTATCGA 59.316 41.667 21.83 7.41 34.90 3.59
885 1595 2.159156 TCATATACCACGAGCTTGCGTT 60.159 45.455 0.00 0.00 43.59 4.84
888 1598 0.388907 TACCACGAGCTTGCGTTACC 60.389 55.000 0.00 0.00 43.59 2.85
895 1605 2.734175 CGAGCTTGCGTTACCTGATGTA 60.734 50.000 0.00 0.00 0.00 2.29
923 1633 4.200092 CCTCTATAAAAGGTGAGGCCAAC 58.800 47.826 5.01 2.02 39.46 3.77
976 1698 0.185901 AACATCAGCAACCACCACCT 59.814 50.000 0.00 0.00 0.00 4.00
980 1702 0.976641 TCAGCAACCACCACCTAGAG 59.023 55.000 0.00 0.00 0.00 2.43
989 1711 1.822613 CCACCTAGAGCTACCGCGA 60.823 63.158 8.23 0.00 42.32 5.87
992 1714 1.526455 CCTAGAGCTACCGCGACCT 60.526 63.158 8.23 0.00 42.32 3.85
994 1716 1.149987 CTAGAGCTACCGCGACCTAG 58.850 60.000 8.23 4.27 42.32 3.02
1118 1840 2.028112 TGTTCCTCAAAGTCGAGATGGG 60.028 50.000 0.00 0.00 34.79 4.00
1129 1851 1.834996 GAGATGGGGAGCATGCAGA 59.165 57.895 21.98 0.00 0.00 4.26
1161 1883 2.202878 GTCTCGCAGGCGCCAATA 60.203 61.111 31.54 10.04 39.59 1.90
1173 1895 2.588877 CCAATAGACCAGCCGCCG 60.589 66.667 0.00 0.00 0.00 6.46
1176 1898 2.140792 AATAGACCAGCCGCCGGAT 61.141 57.895 7.68 0.00 0.00 4.18
1278 2000 3.900892 CGCACCGACGGGCTAGAT 61.901 66.667 20.00 0.00 36.48 1.98
1281 2003 0.103572 GCACCGACGGGCTAGATAAA 59.896 55.000 20.00 0.00 36.48 1.40
1283 2005 2.805657 GCACCGACGGGCTAGATAAATT 60.806 50.000 20.00 0.00 36.48 1.82
1330 2052 0.603569 GAGCCTCAACCTCTTGACGA 59.396 55.000 0.00 0.00 32.68 4.20
1349 2072 1.244019 AAAGCCAAGATCCGCCACAC 61.244 55.000 0.00 0.00 0.00 3.82
1427 2150 3.243336 GTGAGACATACAAGGTCGACAC 58.757 50.000 18.91 6.91 40.20 3.67
1447 2170 1.133809 AGTTCCTGCTAGGCCAACCA 61.134 55.000 5.01 0.00 39.06 3.67
1473 2196 1.153449 CACCGATAGCCTTCGCCAA 60.153 57.895 0.56 0.00 37.80 4.52
1590 2313 2.746362 CAAGCAACTCAAGATGGTCTCC 59.254 50.000 0.00 0.00 0.00 3.71
1593 2316 2.611518 CAACTCAAGATGGTCTCCGTC 58.388 52.381 0.20 0.20 39.68 4.79
1597 2320 0.526211 CAAGATGGTCTCCGTCGTCA 59.474 55.000 2.86 0.00 43.76 4.35
1637 2360 1.001378 GACAACTCTTGCAAATGCGGT 60.001 47.619 0.00 0.00 45.83 5.68
1658 2381 4.200092 GTGTATCAGAAGCTTAAAGGGGG 58.800 47.826 0.00 0.00 0.00 5.40
1943 2670 5.671493 AGTATCCTAACCAACATTTCCTCG 58.329 41.667 0.00 0.00 0.00 4.63
1991 2718 4.222145 TGTTCCTCGTAAGGCTAGATGTTT 59.778 41.667 0.00 0.00 43.02 2.83
2170 2954 6.017109 AGGCTAACTGTAACAAACATTGTGAG 60.017 38.462 0.00 0.00 44.59 3.51
2310 3095 0.326904 TCCTGCCCCTGTGATCATCT 60.327 55.000 0.00 0.00 0.00 2.90
2356 3141 6.721318 TCCATAACTCCAAAGCAAGTAATCT 58.279 36.000 0.00 0.00 0.00 2.40
2367 3152 8.230486 CCAAAGCAAGTAATCTTTGTACACTAG 58.770 37.037 0.00 0.00 44.51 2.57
2414 3200 9.403583 AGAAGTAACCTAACTGTTTGAATTTCA 57.596 29.630 0.00 0.00 0.00 2.69
2416 3202 9.797556 AAGTAACCTAACTGTTTGAATTTCAAC 57.202 29.630 11.30 7.77 35.89 3.18
2642 3434 9.898152 TTTATTCTGGTATGTCATGATGTGTTA 57.102 29.630 0.00 0.00 0.00 2.41
2772 3599 9.052759 AGTTTAAAATGGGTTATCTATAGCACG 57.947 33.333 0.00 0.00 0.00 5.34
2789 3616 3.066064 AGCACGTCAGCAACAAAATTACA 59.934 39.130 0.36 0.00 36.85 2.41
2863 3690 2.735134 GACACTTCTAAACCGCACGAAT 59.265 45.455 0.00 0.00 0.00 3.34
2928 3759 2.373169 TCTTCTGTGGTGAAAGCCATCT 59.627 45.455 0.00 0.00 41.08 2.90
2934 3765 2.030805 GTGGTGAAAGCCATCTGTGAAC 60.031 50.000 0.00 0.00 41.08 3.18
2962 3793 7.795482 TTTTTGATTCATATAGGTGGTACCG 57.205 36.000 7.57 0.00 44.90 4.02
2967 3798 4.174704 TCATATAGGTGGTACCGTCACT 57.825 45.455 7.57 5.13 44.90 3.41
2980 3811 5.809051 GGTACCGTCACTAAAGTCCTAATTG 59.191 44.000 0.00 0.00 0.00 2.32
2997 3828 7.758076 GTCCTAATTGCACCCTTTTGTATTAAC 59.242 37.037 0.00 0.00 0.00 2.01
3410 4250 0.947244 AGCTTGTTGGCAGAAAGACG 59.053 50.000 13.56 0.00 34.17 4.18
3414 4254 2.254546 TGTTGGCAGAAAGACGTGAT 57.745 45.000 0.00 0.00 0.00 3.06
3527 4379 2.353605 GCTACTATGATCTGCCTGCTCC 60.354 54.545 0.00 0.00 0.00 4.70
3678 4530 7.055667 AGTAGGAGAGCAATATTTCGATGAA 57.944 36.000 0.00 0.00 0.00 2.57
3865 4726 5.352569 CAGTATGAGTCTTTGCCAGTAAAGG 59.647 44.000 8.14 0.00 39.69 3.11
4224 5088 3.728845 ACAGTTGTGTCATCTGGTGTAC 58.271 45.455 10.99 0.00 36.02 2.90
4335 5199 4.101274 CCATCTGTCCTGATTGATCTGTCT 59.899 45.833 0.00 0.00 0.00 3.41
4420 5284 1.268794 CCTTCCGTCGCTGTCTATCTG 60.269 57.143 0.00 0.00 0.00 2.90
4600 5464 7.706607 TCTCCTGTCTTTCATACATTGTAATCG 59.293 37.037 0.00 0.00 0.00 3.34
4601 5465 7.327975 TCCTGTCTTTCATACATTGTAATCGT 58.672 34.615 0.00 0.00 0.00 3.73
4606 5470 8.440059 GTCTTTCATACATTGTAATCGTGTTGA 58.560 33.333 0.00 0.00 0.00 3.18
4916 5780 7.492524 TCTTCGCTTCAACAGATAACTATCAT 58.507 34.615 0.00 0.00 35.17 2.45
4943 5807 4.781934 AGTTTTTCTAAGGATCGGATGGG 58.218 43.478 0.00 0.00 0.00 4.00
5251 6458 6.102897 ACACAGCTAAGTCAGTTGATTACT 57.897 37.500 0.00 0.00 37.67 2.24
5321 6541 7.254795 CCGGTTGATTACTCATCCTTCAAATAC 60.255 40.741 8.17 0.00 38.58 1.89
5328 6548 6.380079 ACTCATCCTTCAAATACCTTGTCT 57.620 37.500 0.00 0.00 36.34 3.41
5365 6590 0.324943 AGTGTCCCTTTGCATAGCGT 59.675 50.000 0.00 0.00 0.00 5.07
5366 6591 1.165270 GTGTCCCTTTGCATAGCGTT 58.835 50.000 0.00 0.00 0.00 4.84
5378 6603 3.373748 TGCATAGCGTTGTCGATTCATTT 59.626 39.130 0.00 0.00 39.71 2.32
5438 6663 2.127270 ATCGCGCGCAAAGTGTTG 60.127 55.556 32.61 12.21 37.83 3.33
5610 6840 7.036220 CACCTGTAATAAGTAGTGACCTTGAG 58.964 42.308 0.00 0.00 0.00 3.02
5698 6929 0.764890 TCCTGCTAGTGCACCAACTT 59.235 50.000 14.63 0.00 45.31 2.66
5737 6968 4.344865 AAACTGGTGCCGGCGGAT 62.345 61.111 33.44 3.52 0.00 4.18
5826 7059 3.948086 CTTTCGGCGAGTCGAGCGT 62.948 63.158 18.61 0.00 40.42 5.07
5864 7097 1.074951 CCGCTTTTCCCCCACTTCT 59.925 57.895 0.00 0.00 0.00 2.85
5877 7110 2.843113 CCCACTTCTCTCCCATTCTCTT 59.157 50.000 0.00 0.00 0.00 2.85
5935 7178 0.390124 TGCCACCGAAGAAGTACGTT 59.610 50.000 0.00 0.00 0.00 3.99
6583 7853 1.591703 GACACCGTGGATCTGAGCA 59.408 57.895 3.03 0.00 0.00 4.26
6675 7984 2.693017 GAGGAGGAGGAGGAGCCA 59.307 66.667 0.00 0.00 40.02 4.75
6714 8023 0.445829 GGAGCAAGAAGAAGAAGCGC 59.554 55.000 0.00 0.00 0.00 5.92
6853 8162 0.175760 GTACTGGGAGCGCATCAAGA 59.824 55.000 11.47 0.00 0.00 3.02
6980 8291 0.461135 AACAAATGGCATGGGATCGC 59.539 50.000 0.00 2.14 0.00 4.58
7097 8408 1.577328 CTGTTTGTTCCTCCGCGCAT 61.577 55.000 8.75 0.00 0.00 4.73
7158 8469 1.549170 ACGCCGAATTCAAGTACCTCT 59.451 47.619 6.22 0.00 0.00 3.69
7234 8545 0.322008 GACAAGGCCAAGGAGACCTG 60.322 60.000 5.01 0.00 32.13 4.00
7782 9138 1.438710 CGCGCGTCCTTTCTGTTTG 60.439 57.895 24.19 0.00 0.00 2.93
7813 9190 4.365505 TTGTGGCCGCGTGATCGA 62.366 61.111 12.58 0.00 39.71 3.59
7930 9310 2.944390 CCCCAGGGGCCAACCTAA 60.944 66.667 13.35 0.00 39.34 2.69
7936 9316 4.397832 GGGCCAACCTAACGCCGA 62.398 66.667 4.39 0.00 43.99 5.54
7942 9322 1.082117 CAACCTAACGCCGATTCGCT 61.082 55.000 0.00 0.00 0.00 4.93
7961 9341 1.303643 CCCAGGCCGCTCTTTTTCT 60.304 57.895 0.00 0.00 0.00 2.52
7989 9369 3.056328 GGGCTGAACGGTTGGAGC 61.056 66.667 11.35 11.35 0.00 4.70
8011 9391 3.329386 TGCTCTAAGTGTGCAATCAGAC 58.671 45.455 0.00 0.00 41.46 3.51
8018 9398 4.924305 AGTGTGCAATCAGACAAACATT 57.076 36.364 0.00 0.00 38.80 2.71
8019 9400 4.613944 AGTGTGCAATCAGACAAACATTG 58.386 39.130 0.00 0.00 38.80 2.82
8025 9406 7.037438 GTGCAATCAGACAAACATTGGAATAT 58.963 34.615 0.00 0.00 30.71 1.28
8045 9426 3.763097 TTTCATAGCAAGCAACCATCG 57.237 42.857 0.00 0.00 0.00 3.84
8056 9437 1.948611 GCAACCATCGGCTTCAAGGTA 60.949 52.381 0.00 0.00 31.10 3.08
8108 9489 1.414919 GTAAGTGGTGTGGGACTGTGA 59.585 52.381 0.00 0.00 0.00 3.58
8119 9500 1.726853 GGACTGTGAGTGCCATGTAC 58.273 55.000 0.00 0.00 29.54 2.90
8120 9501 1.001974 GGACTGTGAGTGCCATGTACA 59.998 52.381 0.00 0.00 29.54 2.90
8122 9503 1.270839 ACTGTGAGTGCCATGTACACC 60.271 52.381 11.38 5.47 38.87 4.16
8145 9526 4.604976 GATCGGATGAATTCCTTTTGCAG 58.395 43.478 2.27 0.00 42.99 4.41
8154 9535 2.128771 TCCTTTTGCAGATAGGGTGC 57.871 50.000 9.98 0.00 41.59 5.01
8162 9543 3.018856 TGCAGATAGGGTGCTCAATTTG 58.981 45.455 0.00 0.00 41.78 2.32
8164 9545 2.360165 CAGATAGGGTGCTCAATTTGCC 59.640 50.000 0.00 0.00 0.00 4.52
8169 9550 1.544724 GGTGCTCAATTTGCCCACTA 58.455 50.000 14.56 0.00 0.00 2.74
8183 9564 4.220724 TGCCCACTATAATACCGAGAGTT 58.779 43.478 0.00 0.00 0.00 3.01
8190 9571 8.979574 CCACTATAATACCGAGAGTTGATTTTC 58.020 37.037 0.00 0.00 0.00 2.29
8197 9578 3.491267 CCGAGAGTTGATTTTCGCTATCC 59.509 47.826 0.00 0.00 0.00 2.59
8343 9734 5.776519 TTTGATGTGAACTGTGCAAAAAC 57.223 34.783 0.00 0.00 0.00 2.43
8353 9744 5.721876 ACTGTGCAAAAACAAATCATGTG 57.278 34.783 0.00 0.00 42.99 3.21
8354 9745 5.177326 ACTGTGCAAAAACAAATCATGTGT 58.823 33.333 0.00 0.00 42.99 3.72
8355 9746 6.336566 ACTGTGCAAAAACAAATCATGTGTA 58.663 32.000 0.00 0.00 42.99 2.90
8357 9748 8.140628 ACTGTGCAAAAACAAATCATGTGTATA 58.859 29.630 0.00 0.00 42.99 1.47
8438 9893 1.028905 CTCGGCAGAGGTAGAAGAGG 58.971 60.000 5.89 0.00 40.75 3.69
8455 9910 5.905331 AGAAGAGGTGGTAATCATGGTATCA 59.095 40.000 0.00 0.00 0.00 2.15
8528 9991 5.029807 TGTTGTCTGGAGTTGAATGTACA 57.970 39.130 0.00 0.00 0.00 2.90
8529 9992 4.814234 TGTTGTCTGGAGTTGAATGTACAC 59.186 41.667 0.00 0.00 0.00 2.90
8538 10001 2.742053 GTTGAATGTACACTGACGCCAT 59.258 45.455 0.00 0.00 0.00 4.40
8561 10024 1.327303 TTGTTCCCAACAGTGCATCC 58.673 50.000 0.00 0.00 43.27 3.51
8562 10025 0.478072 TGTTCCCAACAGTGCATCCT 59.522 50.000 0.00 0.00 36.25 3.24
8563 10026 1.702401 TGTTCCCAACAGTGCATCCTA 59.298 47.619 0.00 0.00 36.25 2.94
8567 10030 4.046286 TCCCAACAGTGCATCCTATTTT 57.954 40.909 0.00 0.00 0.00 1.82
8568 10031 3.763360 TCCCAACAGTGCATCCTATTTTG 59.237 43.478 0.00 0.00 0.00 2.44
8570 10033 4.380867 CCCAACAGTGCATCCTATTTTGAC 60.381 45.833 0.00 0.00 0.00 3.18
8571 10034 4.406069 CAACAGTGCATCCTATTTTGACG 58.594 43.478 0.00 0.00 0.00 4.35
8572 10035 3.937814 ACAGTGCATCCTATTTTGACGA 58.062 40.909 0.00 0.00 0.00 4.20
8573 10036 3.935203 ACAGTGCATCCTATTTTGACGAG 59.065 43.478 0.00 0.00 0.00 4.18
8574 10037 3.310774 CAGTGCATCCTATTTTGACGAGG 59.689 47.826 0.00 0.00 0.00 4.63
8575 10038 2.032178 GTGCATCCTATTTTGACGAGGC 59.968 50.000 0.00 0.00 32.90 4.70
8576 10039 1.604278 GCATCCTATTTTGACGAGGCC 59.396 52.381 0.00 0.00 0.00 5.19
8577 10040 2.917933 CATCCTATTTTGACGAGGCCA 58.082 47.619 5.01 0.00 0.00 5.36
8578 10041 2.396590 TCCTATTTTGACGAGGCCAC 57.603 50.000 5.01 0.00 0.00 5.01
8579 10042 1.626321 TCCTATTTTGACGAGGCCACA 59.374 47.619 5.01 0.00 0.00 4.17
8580 10043 2.238646 TCCTATTTTGACGAGGCCACAT 59.761 45.455 5.01 0.00 0.00 3.21
8581 10044 2.614057 CCTATTTTGACGAGGCCACATC 59.386 50.000 5.01 0.00 0.00 3.06
8582 10045 2.198827 ATTTTGACGAGGCCACATCA 57.801 45.000 5.01 0.00 0.00 3.07
8583 10046 1.522668 TTTTGACGAGGCCACATCAG 58.477 50.000 5.01 0.00 0.00 2.90
8584 10047 0.321564 TTTGACGAGGCCACATCAGG 60.322 55.000 5.01 0.00 0.00 3.86
8585 10048 1.480212 TTGACGAGGCCACATCAGGT 61.480 55.000 5.01 0.00 0.00 4.00
8586 10049 0.613572 TGACGAGGCCACATCAGGTA 60.614 55.000 5.01 0.00 0.00 3.08
8587 10050 0.535335 GACGAGGCCACATCAGGTAA 59.465 55.000 5.01 0.00 0.00 2.85
8588 10051 1.139058 GACGAGGCCACATCAGGTAAT 59.861 52.381 5.01 0.00 0.00 1.89
8589 10052 1.134401 ACGAGGCCACATCAGGTAATG 60.134 52.381 5.01 0.00 0.00 1.90
8590 10053 1.312815 GAGGCCACATCAGGTAATGC 58.687 55.000 5.01 0.00 0.00 3.56
8591 10054 0.106519 AGGCCACATCAGGTAATGCC 60.107 55.000 5.01 0.00 37.84 4.40
8592 10055 0.395586 GGCCACATCAGGTAATGCCA 60.396 55.000 0.00 0.00 40.61 4.92
8593 10056 0.740737 GCCACATCAGGTAATGCCAC 59.259 55.000 0.00 0.00 40.61 5.01
8652 10115 5.360591 TGTTTCTTCAGTTCAGAGTTCTCC 58.639 41.667 0.00 0.00 0.00 3.71
8658 10121 2.040178 AGTTCAGAGTTCTCCACGGTT 58.960 47.619 0.00 0.00 0.00 4.44
8667 10130 4.308458 TCCACGGTTCCCACTGCG 62.308 66.667 0.00 0.00 31.56 5.18
8674 10137 0.249398 GGTTCCCACTGCGATGTACT 59.751 55.000 0.00 0.00 0.00 2.73
8675 10138 1.641577 GTTCCCACTGCGATGTACTC 58.358 55.000 0.00 0.00 0.00 2.59
8676 10139 1.067142 GTTCCCACTGCGATGTACTCA 60.067 52.381 0.00 0.00 0.00 3.41
8677 10140 1.262417 TCCCACTGCGATGTACTCAA 58.738 50.000 0.00 0.00 0.00 3.02
8678 10141 1.204704 TCCCACTGCGATGTACTCAAG 59.795 52.381 0.00 0.00 0.00 3.02
8679 10142 1.204704 CCCACTGCGATGTACTCAAGA 59.795 52.381 0.00 0.00 0.00 3.02
8680 10143 2.353704 CCCACTGCGATGTACTCAAGAA 60.354 50.000 0.00 0.00 0.00 2.52
8681 10144 3.325870 CCACTGCGATGTACTCAAGAAA 58.674 45.455 0.00 0.00 0.00 2.52
8682 10145 3.745975 CCACTGCGATGTACTCAAGAAAA 59.254 43.478 0.00 0.00 0.00 2.29
8683 10146 4.213270 CCACTGCGATGTACTCAAGAAAAA 59.787 41.667 0.00 0.00 0.00 1.94
8726 10189 1.611977 GGTCCGCCCCTTAAATTATGC 59.388 52.381 0.00 0.00 0.00 3.14
8727 10190 2.583143 GTCCGCCCCTTAAATTATGCT 58.417 47.619 0.00 0.00 0.00 3.79
8728 10191 3.497227 GGTCCGCCCCTTAAATTATGCTA 60.497 47.826 0.00 0.00 0.00 3.49
8729 10192 4.332828 GTCCGCCCCTTAAATTATGCTAT 58.667 43.478 0.00 0.00 0.00 2.97
8730 10193 4.765339 GTCCGCCCCTTAAATTATGCTATT 59.235 41.667 0.00 0.00 0.00 1.73
8731 10194 5.941647 GTCCGCCCCTTAAATTATGCTATTA 59.058 40.000 0.00 0.00 0.00 0.98
8732 10195 6.093633 GTCCGCCCCTTAAATTATGCTATTAG 59.906 42.308 0.00 0.00 0.00 1.73
8733 10196 5.163652 CCGCCCCTTAAATTATGCTATTAGC 60.164 44.000 8.80 8.80 42.82 3.09
8790 10253 9.869844 GACAATTCTCTACACATTATAACATGC 57.130 33.333 0.00 0.00 0.00 4.06
8791 10254 9.618890 ACAATTCTCTACACATTATAACATGCT 57.381 29.630 0.00 0.00 0.00 3.79
8800 10263 7.581476 ACACATTATAACATGCTATTAACGGC 58.419 34.615 0.00 0.00 0.00 5.68
8801 10264 6.736405 CACATTATAACATGCTATTAACGGCG 59.264 38.462 4.80 4.80 0.00 6.46
8802 10265 3.806316 ATAACATGCTATTAACGGCGC 57.194 42.857 6.90 0.00 0.00 6.53
8803 10266 1.663695 AACATGCTATTAACGGCGCT 58.336 45.000 6.90 0.00 0.00 5.92
8804 10267 2.519377 ACATGCTATTAACGGCGCTA 57.481 45.000 6.90 0.00 0.00 4.26
8805 10268 3.040147 ACATGCTATTAACGGCGCTAT 57.960 42.857 6.90 0.00 0.00 2.97
8806 10269 4.182693 ACATGCTATTAACGGCGCTATA 57.817 40.909 6.90 1.21 0.00 1.31
8807 10270 4.174009 ACATGCTATTAACGGCGCTATAG 58.826 43.478 6.90 12.48 0.00 1.31
8808 10271 2.602878 TGCTATTAACGGCGCTATAGC 58.397 47.619 27.33 27.33 43.53 2.97
8822 10285 4.391140 GCTATAGCGCGCTATTTTTCTT 57.609 40.909 46.76 30.19 39.65 2.52
8823 10286 4.773510 GCTATAGCGCGCTATTTTTCTTT 58.226 39.130 46.76 29.53 39.65 2.52
8824 10287 4.841306 GCTATAGCGCGCTATTTTTCTTTC 59.159 41.667 46.76 26.38 39.65 2.62
8825 10288 4.875544 ATAGCGCGCTATTTTTCTTTCA 57.124 36.364 40.32 20.00 35.92 2.69
8826 10289 3.552604 AGCGCGCTATTTTTCTTTCAA 57.447 38.095 35.79 0.00 0.00 2.69
8827 10290 4.096732 AGCGCGCTATTTTTCTTTCAAT 57.903 36.364 35.79 1.11 0.00 2.57
8828 10291 3.853671 AGCGCGCTATTTTTCTTTCAATG 59.146 39.130 35.79 0.00 0.00 2.82
8829 10292 3.000773 GCGCGCTATTTTTCTTTCAATGG 60.001 43.478 26.67 0.00 0.00 3.16
8830 10293 4.411327 CGCGCTATTTTTCTTTCAATGGA 58.589 39.130 5.56 0.00 0.00 3.41
8831 10294 5.036737 CGCGCTATTTTTCTTTCAATGGAT 58.963 37.500 5.56 0.00 0.00 3.41
8832 10295 5.052172 CGCGCTATTTTTCTTTCAATGGATG 60.052 40.000 5.56 0.00 0.00 3.51
8833 10296 5.807011 GCGCTATTTTTCTTTCAATGGATGT 59.193 36.000 0.00 0.00 0.00 3.06
8834 10297 6.972328 GCGCTATTTTTCTTTCAATGGATGTA 59.028 34.615 0.00 0.00 0.00 2.29
8835 10298 7.044052 GCGCTATTTTTCTTTCAATGGATGTAC 60.044 37.037 0.00 0.00 0.00 2.90
8842 10305 4.164221 TCTTTCAATGGATGTACTCCCTCC 59.836 45.833 8.36 3.94 44.23 4.30
8845 10308 1.705873 ATGGATGTACTCCCTCCGTC 58.294 55.000 8.36 0.00 44.23 4.79
8846 10309 0.629596 TGGATGTACTCCCTCCGTCT 59.370 55.000 8.36 0.00 44.23 4.18
8860 10330 3.070018 CTCCGTCTCAAATGCTTGTCTT 58.930 45.455 0.00 0.00 33.94 3.01
8891 10361 5.891551 GTGAGGTAATACCATGGAAACCAAT 59.108 40.000 21.47 5.04 41.95 3.16
8909 10380 4.101119 ACCAATATCCCTCTAACTGGAACG 59.899 45.833 0.00 0.00 33.54 3.95
8910 10381 4.344102 CCAATATCCCTCTAACTGGAACGA 59.656 45.833 0.00 0.00 33.54 3.85
8911 10382 5.290386 CAATATCCCTCTAACTGGAACGAC 58.710 45.833 0.00 0.00 33.54 4.34
8948 10421 2.505498 CGCGCACATCGTACTCACC 61.505 63.158 8.75 0.00 41.07 4.02
8950 10423 1.214325 CGCACATCGTACTCACCCA 59.786 57.895 0.00 0.00 0.00 4.51
9009 10482 0.681733 TCAGAGTCAGACCAACAGGC 59.318 55.000 0.00 0.00 0.00 4.85
9025 10498 0.251922 AGGCAACAGCCATGTTCCAT 60.252 50.000 9.42 0.00 46.90 3.41
9028 10501 2.233431 GGCAACAGCCATGTTCCATTTA 59.767 45.455 0.84 0.00 46.90 1.40
9029 10502 3.118665 GGCAACAGCCATGTTCCATTTAT 60.119 43.478 0.84 0.00 46.90 1.40
9079 10581 1.734117 TGTGTGATCGAGCTGCGTG 60.734 57.895 0.90 0.00 41.80 5.34
9082 10584 1.444383 GTGATCGAGCTGCGTGTCA 60.444 57.895 0.90 1.99 41.80 3.58
9094 10596 2.991728 CGTGTCAATCGCAAGCTTG 58.008 52.632 22.44 22.44 44.40 4.01
9238 10783 1.558756 AGCTGGGGAGATCTTGACAAG 59.441 52.381 9.03 9.03 0.00 3.16
9239 10784 1.280421 GCTGGGGAGATCTTGACAAGT 59.720 52.381 14.75 2.81 0.00 3.16
9275 10820 6.513180 GCTTATGTAGCCTAACTGTGACATA 58.487 40.000 0.00 0.00 44.48 2.29
9296 10841 0.322008 CAACTGCCAAGTCCTCTCCC 60.322 60.000 0.00 0.00 34.77 4.30
9298 10843 2.203788 TGCCAAGTCCTCTCCCGT 60.204 61.111 0.00 0.00 0.00 5.28
9319 10869 0.465705 ATGATCTGCAGGTGGGTACG 59.534 55.000 15.13 0.00 0.00 3.67
9379 10934 4.916183 AGCTCAGTTCCTGCTCTATTTTT 58.084 39.130 0.00 0.00 30.41 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 4.974368 TTGTGTTCCTCAAAAACGATGT 57.026 36.364 0.00 0.00 0.00 3.06
141 143 2.005451 CTCTTGTACTGATGCAGTGGC 58.995 52.381 10.15 4.17 45.01 5.01
153 158 0.865769 CGGCACAACACCTCTTGTAC 59.134 55.000 0.00 0.00 37.51 2.90
172 177 4.800554 CCTCGATATTGGCACCCC 57.199 61.111 0.00 0.00 0.00 4.95
215 220 7.184753 TCCACTATCTAGATCTGCCTAGGATAA 59.815 40.741 14.75 0.00 37.36 1.75
231 236 2.623416 CAGACGCCACATCCACTATCTA 59.377 50.000 0.00 0.00 0.00 1.98
283 298 0.033405 TACTCGCCCTTGTAGGAGCT 60.033 55.000 0.00 0.00 37.67 4.09
287 302 4.602340 AATACATACTCGCCCTTGTAGG 57.398 45.455 0.00 0.00 34.30 3.18
304 319 3.061697 CGAGTTCGCTACCACCAAAATAC 59.938 47.826 0.00 0.00 0.00 1.89
306 321 2.073816 CGAGTTCGCTACCACCAAAAT 58.926 47.619 0.00 0.00 0.00 1.82
333 348 3.343617 TGGAAGTAGGCAATGTTAGCAC 58.656 45.455 0.00 0.00 0.00 4.40
385 400 5.708697 TCCCATAGACACACACGGTATATAG 59.291 44.000 0.00 0.00 0.00 1.31
412 427 0.898326 ATCCCGCAAAACAACCTCCC 60.898 55.000 0.00 0.00 0.00 4.30
449 1115 9.900710 CTCAAAGCTGAATAATAGTACTCGTAT 57.099 33.333 0.00 0.00 0.00 3.06
495 1161 4.340666 ACCACTTGTCAATAACAATGCACA 59.659 37.500 0.00 0.00 46.53 4.57
503 1169 6.203647 GGTGTTGTAACCACTTGTCAATAAC 58.796 40.000 0.00 0.00 40.22 1.89
522 1188 4.817318 AATCCGCATAATTTTGGGTGTT 57.183 36.364 11.07 4.08 0.00 3.32
528 1194 6.142139 TCGAGCATTAATCCGCATAATTTTG 58.858 36.000 1.12 0.00 0.00 2.44
529 1195 6.017109 ACTCGAGCATTAATCCGCATAATTTT 60.017 34.615 13.61 0.00 0.00 1.82
622 1288 2.429069 GCCAAGGCGCGAAACAAG 60.429 61.111 12.10 0.00 0.00 3.16
641 1307 3.784468 GGATATGACGCATATGTACGACG 59.216 47.826 14.40 4.25 37.20 5.12
707 1416 9.445878 AAGCTAGCGTACATCATATTAGTAGTA 57.554 33.333 9.55 0.00 0.00 1.82
708 1417 7.925043 AGCTAGCGTACATCATATTAGTAGT 57.075 36.000 9.55 0.00 0.00 2.73
726 1435 5.560953 CGGCACCTAAATTGAATAAGCTAGC 60.561 44.000 6.62 6.62 0.00 3.42
768 1477 2.113243 GAGTGGGTCGAAACCTGCCT 62.113 60.000 8.67 2.73 45.66 4.75
834 1543 4.307432 CATCCGTGATCAAGTGGGTATAC 58.693 47.826 7.88 0.00 0.00 1.47
885 1595 1.108776 GAGGGCACGTACATCAGGTA 58.891 55.000 0.00 0.00 0.00 3.08
888 1598 4.848562 TTATAGAGGGCACGTACATCAG 57.151 45.455 6.81 0.00 0.00 2.90
895 1605 2.835764 TCACCTTTTATAGAGGGCACGT 59.164 45.455 8.58 0.00 38.65 4.49
976 1698 0.883814 GCTAGGTCGCGGTAGCTCTA 60.884 60.000 21.39 8.83 42.32 2.43
1173 1895 0.908198 AGAGCTTGACCTGGACATCC 59.092 55.000 0.00 0.00 0.00 3.51
1278 2000 2.233431 GCCCATGAAGGTGTGCAATTTA 59.767 45.455 0.00 0.00 34.66 1.40
1281 2003 0.251922 AGCCCATGAAGGTGTGCAAT 60.252 50.000 0.00 0.00 34.66 3.56
1283 2005 0.895100 GAAGCCCATGAAGGTGTGCA 60.895 55.000 0.00 0.00 34.66 4.57
1330 2052 1.074775 TGTGGCGGATCTTGGCTTT 59.925 52.632 11.94 0.00 0.00 3.51
1349 2072 1.001268 CCCTGACATCGGTGAGTATCG 60.001 57.143 0.65 0.00 38.61 2.92
1447 2170 1.198759 AGGCTATCGGTGGTTGTGGT 61.199 55.000 0.00 0.00 0.00 4.16
1533 2256 2.716217 CCCTTTCTCAACATCTCCACC 58.284 52.381 0.00 0.00 0.00 4.61
1590 2313 0.170561 ATCCTCCGAAACTGACGACG 59.829 55.000 0.00 0.00 0.00 5.12
1593 2316 1.359848 CCAATCCTCCGAAACTGACG 58.640 55.000 0.00 0.00 0.00 4.35
1597 2320 0.404040 TTGCCCAATCCTCCGAAACT 59.596 50.000 0.00 0.00 0.00 2.66
1637 2360 3.850173 ACCCCCTTTAAGCTTCTGATACA 59.150 43.478 0.00 0.00 0.00 2.29
1658 2381 5.351458 AGACAAAAGCTCCACAATCAAAAC 58.649 37.500 0.00 0.00 0.00 2.43
1716 2439 5.350091 GTCAAGTTGATGGAGTAAGCTCTTC 59.650 44.000 9.18 0.00 41.38 2.87
1721 2444 4.997395 TCTTGTCAAGTTGATGGAGTAAGC 59.003 41.667 9.18 0.00 0.00 3.09
1765 2488 1.494721 TGCTTCTCCCCAGTTTGACTT 59.505 47.619 0.00 0.00 0.00 3.01
1943 2670 7.429636 TGCTCACAATTAGTTGTAAGTAACC 57.570 36.000 2.99 0.00 46.49 2.85
1991 2718 6.207810 ACCCGTGCTGTTTATTTGATTTCTTA 59.792 34.615 0.00 0.00 0.00 2.10
2356 3141 9.826574 ACAATTCTACAAGAACTAGTGTACAAA 57.173 29.630 0.00 0.00 37.00 2.83
2395 3181 8.257306 ACAATGTTGAAATTCAAACAGTTAGGT 58.743 29.630 10.27 3.19 38.22 3.08
2688 3514 6.812998 TCTCCTACATTTACCTATTGAACCG 58.187 40.000 0.00 0.00 0.00 4.44
2772 3599 4.584327 ACCCTGTAATTTTGTTGCTGAC 57.416 40.909 0.00 0.00 0.00 3.51
2789 3616 6.607019 TGTTCCAAGTGACTAATTTTACCCT 58.393 36.000 0.00 0.00 0.00 4.34
2962 3793 4.395231 GGGTGCAATTAGGACTTTAGTGAC 59.605 45.833 0.00 0.00 38.81 3.67
2967 3798 5.836358 ACAAAAGGGTGCAATTAGGACTTTA 59.164 36.000 0.00 0.00 38.81 1.85
2980 3811 7.571892 CAAAACATGTTAATACAAAAGGGTGC 58.428 34.615 12.39 0.00 37.91 5.01
3301 4141 6.480763 TCAACTGTTTATGAGGGCTTTCATA 58.519 36.000 7.76 7.76 38.65 2.15
3307 4147 3.197766 TCGATCAACTGTTTATGAGGGCT 59.802 43.478 0.00 0.00 0.00 5.19
3410 4250 1.001974 TGGACCAGTGTGCACTATCAC 59.998 52.381 19.41 7.78 40.20 3.06
3414 4254 1.488812 ACTTTGGACCAGTGTGCACTA 59.511 47.619 19.41 1.23 43.03 2.74
3441 4293 4.740822 AGCCCGGTGCCCATTGAC 62.741 66.667 10.82 0.00 42.71 3.18
3678 4530 8.515414 GTCTGGATCAAGCTTTTGTTAATAAGT 58.485 33.333 0.00 0.00 0.00 2.24
3865 4726 2.562876 GGAGGGATAGTCGGCGGAC 61.563 68.421 16.09 16.09 43.76 4.79
4215 5079 1.330234 TAACACGCAGGTACACCAGA 58.670 50.000 0.38 0.00 38.89 3.86
4224 5088 6.046593 TCTTATCCAACTATTAACACGCAGG 58.953 40.000 0.00 0.00 0.00 4.85
4420 5284 1.680207 GCTTTGGAGATTGATGAGGCC 59.320 52.381 0.00 0.00 0.00 5.19
4601 5465 0.813610 CTCGCCCAGTGTGTTCAACA 60.814 55.000 0.00 0.00 36.04 3.33
4606 5470 2.743718 CTCCTCGCCCAGTGTGTT 59.256 61.111 0.00 0.00 0.00 3.32
4916 5780 5.860611 TCCGATCCTTAGAAAAACTCAACA 58.139 37.500 0.00 0.00 0.00 3.33
4943 5807 4.247380 CCGCAGCCTCCATCTCCC 62.247 72.222 0.00 0.00 0.00 4.30
5365 6590 4.490743 TGTAGCTCGAAATGAATCGACAA 58.509 39.130 0.00 0.00 46.12 3.18
5366 6591 4.104696 TGTAGCTCGAAATGAATCGACA 57.895 40.909 0.00 0.00 46.12 4.35
5378 6603 2.612672 CTCGGTGATAGTTGTAGCTCGA 59.387 50.000 0.00 0.00 0.00 4.04
5438 6663 1.070601 ACCCTTTCAAGCAACAATGGC 59.929 47.619 0.00 0.00 0.00 4.40
5447 6672 0.534203 TCACCACGACCCTTTCAAGC 60.534 55.000 0.00 0.00 0.00 4.01
5504 6733 3.785122 GACCACCACCACCACCACC 62.785 68.421 0.00 0.00 0.00 4.61
5505 6734 2.203294 GACCACCACCACCACCAC 60.203 66.667 0.00 0.00 0.00 4.16
5506 6735 3.494254 GGACCACCACCACCACCA 61.494 66.667 0.00 0.00 35.97 4.17
5507 6736 4.636435 CGGACCACCACCACCACC 62.636 72.222 0.00 0.00 35.59 4.61
5508 6737 3.409605 AACGGACCACCACCACCAC 62.410 63.158 0.00 0.00 35.59 4.16
5509 6738 3.091190 AACGGACCACCACCACCA 61.091 61.111 0.00 0.00 35.59 4.17
5610 6840 3.633986 ACCTGCTAGCATTGGATAAAAGC 59.366 43.478 25.43 0.00 0.00 3.51
5648 6878 3.131046 GGAGATGCCCAAATTCGAACATT 59.869 43.478 0.00 0.00 0.00 2.71
5698 6929 3.350612 CCGAGCCGGCGAAAAACA 61.351 61.111 23.20 0.00 41.17 2.83
5717 6948 3.283684 CGCCGGCACCAGTTTCAA 61.284 61.111 28.98 0.00 0.00 2.69
5782 7014 1.202675 ACCCACGCGACCTTTTTCTTA 60.203 47.619 15.93 0.00 0.00 2.10
5786 7018 1.895231 GGACCCACGCGACCTTTTT 60.895 57.895 15.93 0.00 0.00 1.94
5810 7043 4.456253 GACGCTCGACTCGCCGAA 62.456 66.667 15.19 0.00 38.17 4.30
5826 7059 0.108329 GATGAAACGGCGGGAAGAGA 60.108 55.000 13.24 0.00 0.00 3.10
5864 7097 3.713764 GGAGGAATGAAGAGAATGGGAGA 59.286 47.826 0.00 0.00 0.00 3.71
5877 7110 0.469917 GAGATTGGCGGGAGGAATGA 59.530 55.000 0.00 0.00 0.00 2.57
6455 7725 4.821589 CGAGGTGCGAGAAGGGCC 62.822 72.222 0.00 0.00 44.57 5.80
6481 7751 0.107993 ATGTCGGTCTCGGTCTCGTA 60.108 55.000 0.00 0.00 37.69 3.43
6583 7853 2.185350 CTCGTCTTCCATGCCGCT 59.815 61.111 0.00 0.00 0.00 5.52
6675 7984 4.421479 CTCGCCGGAACAGTCGCT 62.421 66.667 5.05 0.00 0.00 4.93
6816 8125 0.603569 ACGTCTCGATGCTCTGGTTT 59.396 50.000 0.00 0.00 0.00 3.27
6853 8162 4.755614 GCGCTCGTCGAACTCGGT 62.756 66.667 0.00 0.00 41.67 4.69
6871 8180 1.067821 GAAGTAGGGGTCGATGAGCTG 59.932 57.143 0.00 0.00 0.00 4.24
6877 8186 1.209747 GCCTTTGAAGTAGGGGTCGAT 59.790 52.381 0.00 0.00 33.19 3.59
7158 8469 2.679336 TGTCTATGCGCTTGTAGACGTA 59.321 45.455 27.05 16.81 46.17 3.57
7280 8591 0.459489 TCTTGGCACCTTTGTTGCAC 59.541 50.000 0.00 0.00 0.00 4.57
7325 8636 2.202730 GCTCCTGCACTCGAGAGC 60.203 66.667 25.51 25.51 44.36 4.09
7326 8637 1.674764 ATGGCTCCTGCACTCGAGAG 61.675 60.000 21.68 13.24 41.91 3.20
7379 8691 3.004839 CAGTCTTCTCTTCACGAAGGACA 59.995 47.826 6.94 0.00 38.66 4.02
7520 8833 2.282251 TCGTCGGTGCTCTGGAGT 60.282 61.111 0.00 0.00 0.00 3.85
7742 9097 2.885113 CATCAGACGGCGAGGTCA 59.115 61.111 16.62 0.00 39.42 4.02
7782 9138 2.113910 CCACAAGTTTGGCGTACAAC 57.886 50.000 0.00 0.00 39.19 3.32
7813 9190 2.396590 AATAGACGCCACAAATCCGT 57.603 45.000 0.00 0.00 37.99 4.69
7892 9272 1.990060 GACCTAGCTCCCAGCCACA 60.990 63.158 0.00 0.00 43.77 4.17
7930 9310 4.514577 CTGGGAGCGAATCGGCGT 62.515 66.667 6.85 0.00 38.18 5.68
7942 9322 1.303317 GAAAAAGAGCGGCCTGGGA 60.303 57.895 0.00 0.00 0.00 4.37
7989 9369 3.370366 GTCTGATTGCACACTTAGAGCAG 59.630 47.826 0.00 0.00 44.58 4.24
8011 9391 8.545420 GCTTGCTATGAAATATTCCAATGTTTG 58.455 33.333 0.00 0.00 31.15 2.93
8018 9398 5.655974 TGGTTGCTTGCTATGAAATATTCCA 59.344 36.000 0.00 0.00 0.00 3.53
8019 9400 6.147864 TGGTTGCTTGCTATGAAATATTCC 57.852 37.500 0.00 0.00 0.00 3.01
8025 9406 2.423185 CCGATGGTTGCTTGCTATGAAA 59.577 45.455 0.00 0.00 0.00 2.69
8045 9426 2.749621 CCAGTCACATTACCTTGAAGCC 59.250 50.000 0.00 0.00 0.00 4.35
8081 9462 5.011329 CAGTCCCACACCACTTACTACTAAA 59.989 44.000 0.00 0.00 0.00 1.85
8108 9489 0.179111 CGATCGGTGTACATGGCACT 60.179 55.000 17.96 3.53 37.07 4.40
8116 9497 3.057734 GGAATTCATCCGATCGGTGTAC 58.942 50.000 32.15 17.36 38.79 2.90
8145 9526 1.683385 GGGCAAATTGAGCACCCTATC 59.317 52.381 0.00 0.00 37.59 2.08
8154 9535 5.995282 TCGGTATTATAGTGGGCAAATTGAG 59.005 40.000 0.00 0.00 0.00 3.02
8162 9543 4.280174 TCAACTCTCGGTATTATAGTGGGC 59.720 45.833 0.00 0.00 0.00 5.36
8164 9545 8.888579 AAAATCAACTCTCGGTATTATAGTGG 57.111 34.615 0.00 0.00 0.00 4.00
8169 9550 6.281405 AGCGAAAATCAACTCTCGGTATTAT 58.719 36.000 0.00 0.00 39.95 1.28
8183 9564 1.540363 GGAGCCGGATAGCGAAAATCA 60.540 52.381 5.05 0.00 38.01 2.57
8190 9571 2.047844 CCATGGAGCCGGATAGCG 60.048 66.667 5.56 0.00 38.01 4.26
8312 9702 6.198216 GCACAGTTCACATCAAAACGTATTTT 59.802 34.615 0.00 0.00 38.61 1.82
8353 9744 8.071368 GCTCGAGCTACATGGAGTATATTATAC 58.929 40.741 29.88 5.81 38.21 1.47
8354 9745 8.155821 GCTCGAGCTACATGGAGTATATTATA 57.844 38.462 29.88 0.00 38.21 0.98
8355 9746 7.033530 GCTCGAGCTACATGGAGTATATTAT 57.966 40.000 29.88 0.00 38.21 1.28
8357 9748 5.317733 GCTCGAGCTACATGGAGTATATT 57.682 43.478 29.88 0.00 38.21 1.28
8401 9856 2.749076 CGAGCCTGATCAATTTCCAACA 59.251 45.455 0.00 0.00 0.00 3.33
8402 9857 2.098117 CCGAGCCTGATCAATTTCCAAC 59.902 50.000 0.00 0.00 0.00 3.77
8455 9910 1.063492 ACCCCACATGCATCATCACAT 60.063 47.619 0.00 0.00 0.00 3.21
8462 9917 0.748450 CCATTGACCCCACATGCATC 59.252 55.000 0.00 0.00 0.00 3.91
8550 10013 4.323417 TCGTCAAAATAGGATGCACTGTT 58.677 39.130 0.00 0.00 0.00 3.16
8561 10024 3.270027 TGATGTGGCCTCGTCAAAATAG 58.730 45.455 24.01 0.00 31.51 1.73
8562 10025 3.270027 CTGATGTGGCCTCGTCAAAATA 58.730 45.455 25.56 7.34 33.72 1.40
8563 10026 2.086869 CTGATGTGGCCTCGTCAAAAT 58.913 47.619 25.56 2.28 33.72 1.82
8567 10030 0.613572 TACCTGATGTGGCCTCGTCA 60.614 55.000 24.43 24.43 33.18 4.35
8568 10031 0.535335 TTACCTGATGTGGCCTCGTC 59.465 55.000 18.28 18.28 0.00 4.20
8570 10033 1.586422 CATTACCTGATGTGGCCTCG 58.414 55.000 3.32 0.00 0.00 4.63
8571 10034 1.312815 GCATTACCTGATGTGGCCTC 58.687 55.000 3.32 0.00 0.00 4.70
8572 10035 0.106519 GGCATTACCTGATGTGGCCT 60.107 55.000 3.32 0.00 37.16 5.19
8573 10036 0.395586 TGGCATTACCTGATGTGGCC 60.396 55.000 0.00 0.00 40.22 5.36
8574 10037 0.740737 GTGGCATTACCTGATGTGGC 59.259 55.000 0.00 0.00 40.22 5.01
8575 10038 1.016627 CGTGGCATTACCTGATGTGG 58.983 55.000 0.00 0.00 40.22 4.17
8576 10039 0.378257 GCGTGGCATTACCTGATGTG 59.622 55.000 0.00 0.00 40.22 3.21
8577 10040 0.253044 AGCGTGGCATTACCTGATGT 59.747 50.000 0.00 0.00 40.22 3.06
8578 10041 2.138320 CTAGCGTGGCATTACCTGATG 58.862 52.381 0.00 0.00 40.22 3.07
8579 10042 1.541233 GCTAGCGTGGCATTACCTGAT 60.541 52.381 0.00 0.00 40.22 2.90
8580 10043 0.179084 GCTAGCGTGGCATTACCTGA 60.179 55.000 0.00 0.00 40.22 3.86
8581 10044 0.179073 AGCTAGCGTGGCATTACCTG 60.179 55.000 9.55 0.00 40.22 4.00
8582 10045 1.341531 CTAGCTAGCGTGGCATTACCT 59.658 52.381 8.05 0.00 40.22 3.08
8583 10046 1.784525 CTAGCTAGCGTGGCATTACC 58.215 55.000 8.05 0.00 39.84 2.85
8584 10047 1.140816 GCTAGCTAGCGTGGCATTAC 58.859 55.000 28.89 0.98 39.82 1.89
8585 10048 3.588277 GCTAGCTAGCGTGGCATTA 57.412 52.632 28.89 1.97 39.82 1.90
8586 10049 4.445699 GCTAGCTAGCGTGGCATT 57.554 55.556 28.89 0.91 39.82 3.56
8658 10121 1.204704 CTTGAGTACATCGCAGTGGGA 59.795 52.381 12.80 12.80 0.00 4.37
8706 10169 1.611977 GCATAATTTAAGGGGCGGACC 59.388 52.381 0.00 0.00 39.11 4.46
8707 10170 2.583143 AGCATAATTTAAGGGGCGGAC 58.417 47.619 0.00 0.00 0.00 4.79
8708 10171 4.650972 ATAGCATAATTTAAGGGGCGGA 57.349 40.909 0.00 0.00 0.00 5.54
8709 10172 5.163652 GCTAATAGCATAATTTAAGGGGCGG 60.164 44.000 7.49 0.00 41.89 6.13
8710 10173 5.880341 GCTAATAGCATAATTTAAGGGGCG 58.120 41.667 7.49 0.00 41.89 6.13
8764 10227 9.869844 GCATGTTATAATGTGTAGAGAATTGTC 57.130 33.333 0.00 0.00 0.00 3.18
8765 10228 9.618890 AGCATGTTATAATGTGTAGAGAATTGT 57.381 29.630 0.00 0.00 0.00 2.71
8774 10237 8.714179 GCCGTTAATAGCATGTTATAATGTGTA 58.286 33.333 2.17 0.00 0.00 2.90
8775 10238 7.570507 CGCCGTTAATAGCATGTTATAATGTGT 60.571 37.037 2.17 0.00 0.00 3.72
8776 10239 6.736405 CGCCGTTAATAGCATGTTATAATGTG 59.264 38.462 2.17 0.00 0.00 3.21
8777 10240 6.619874 GCGCCGTTAATAGCATGTTATAATGT 60.620 38.462 2.17 0.00 0.00 2.71
8778 10241 5.732647 GCGCCGTTAATAGCATGTTATAATG 59.267 40.000 2.17 4.05 0.00 1.90
8779 10242 5.642063 AGCGCCGTTAATAGCATGTTATAAT 59.358 36.000 2.29 0.00 0.00 1.28
8780 10243 4.992319 AGCGCCGTTAATAGCATGTTATAA 59.008 37.500 2.29 0.00 0.00 0.98
8781 10244 4.562082 AGCGCCGTTAATAGCATGTTATA 58.438 39.130 2.29 0.00 0.00 0.98
8782 10245 3.399330 AGCGCCGTTAATAGCATGTTAT 58.601 40.909 2.29 0.00 0.00 1.89
8783 10246 2.828877 AGCGCCGTTAATAGCATGTTA 58.171 42.857 2.29 0.00 0.00 2.41
8784 10247 1.663695 AGCGCCGTTAATAGCATGTT 58.336 45.000 2.29 0.00 0.00 2.71
8785 10248 2.519377 TAGCGCCGTTAATAGCATGT 57.481 45.000 2.29 0.00 0.00 3.21
8786 10249 3.000322 GCTATAGCGCCGTTAATAGCATG 60.000 47.826 21.46 0.00 43.98 4.06
8787 10250 3.187700 GCTATAGCGCCGTTAATAGCAT 58.812 45.455 21.46 0.00 43.98 3.79
8788 10251 2.602878 GCTATAGCGCCGTTAATAGCA 58.397 47.619 21.46 0.00 43.98 3.49
8801 10264 4.391140 AAGAAAAATAGCGCGCTATAGC 57.609 40.909 43.81 32.26 38.20 2.97
8802 10265 5.974300 TGAAAGAAAAATAGCGCGCTATAG 58.026 37.500 43.81 1.26 38.20 1.31
8803 10266 5.977171 TGAAAGAAAAATAGCGCGCTATA 57.023 34.783 43.81 28.26 38.20 1.31
8804 10267 4.875544 TGAAAGAAAAATAGCGCGCTAT 57.124 36.364 40.32 40.32 40.63 2.97
8805 10268 4.671880 TTGAAAGAAAAATAGCGCGCTA 57.328 36.364 39.72 39.72 0.00 4.26
8806 10269 3.552604 TTGAAAGAAAAATAGCGCGCT 57.447 38.095 38.01 38.01 0.00 5.92
8807 10270 3.000773 CCATTGAAAGAAAAATAGCGCGC 60.001 43.478 26.66 26.66 0.00 6.86
8808 10271 4.411327 TCCATTGAAAGAAAAATAGCGCG 58.589 39.130 0.00 0.00 0.00 6.86
8809 10272 5.807011 ACATCCATTGAAAGAAAAATAGCGC 59.193 36.000 0.00 0.00 0.00 5.92
8810 10273 8.184192 AGTACATCCATTGAAAGAAAAATAGCG 58.816 33.333 0.00 0.00 0.00 4.26
8811 10274 9.508567 GAGTACATCCATTGAAAGAAAAATAGC 57.491 33.333 0.00 0.00 0.00 2.97
8829 10292 2.054232 TGAGACGGAGGGAGTACATC 57.946 55.000 0.00 0.00 0.00 3.06
8830 10293 2.526888 TTGAGACGGAGGGAGTACAT 57.473 50.000 0.00 0.00 0.00 2.29
8831 10294 2.297698 TTTGAGACGGAGGGAGTACA 57.702 50.000 0.00 0.00 0.00 2.90
8832 10295 2.738964 GCATTTGAGACGGAGGGAGTAC 60.739 54.545 0.00 0.00 0.00 2.73
8833 10296 1.480954 GCATTTGAGACGGAGGGAGTA 59.519 52.381 0.00 0.00 0.00 2.59
8834 10297 0.250513 GCATTTGAGACGGAGGGAGT 59.749 55.000 0.00 0.00 0.00 3.85
8835 10298 0.539051 AGCATTTGAGACGGAGGGAG 59.461 55.000 0.00 0.00 0.00 4.30
8842 10305 6.414408 AATCTAAGACAAGCATTTGAGACG 57.586 37.500 0.00 0.00 37.73 4.18
8845 10308 7.587629 TCACAAATCTAAGACAAGCATTTGAG 58.412 34.615 9.15 2.67 37.70 3.02
8846 10309 7.308770 CCTCACAAATCTAAGACAAGCATTTGA 60.309 37.037 9.15 0.00 37.70 2.69
8860 10330 7.684317 TCCATGGTATTACCTCACAAATCTA 57.316 36.000 12.58 0.00 39.58 1.98
8891 10361 3.294214 GGTCGTTCCAGTTAGAGGGATA 58.706 50.000 0.00 0.00 35.97 2.59
8909 10380 1.060122 CGCGTCGTATTTTCCTTGGTC 59.940 52.381 0.00 0.00 0.00 4.02
8910 10381 1.073177 CGCGTCGTATTTTCCTTGGT 58.927 50.000 0.00 0.00 0.00 3.67
8911 10382 0.247537 GCGCGTCGTATTTTCCTTGG 60.248 55.000 8.43 0.00 0.00 3.61
9025 10498 7.143340 AGTACTTGCGCGTAATCAGATATAAA 58.857 34.615 10.79 0.00 0.00 1.40
9028 10501 5.048643 AGAGTACTTGCGCGTAATCAGATAT 60.049 40.000 19.88 2.14 37.04 1.63
9029 10502 4.275196 AGAGTACTTGCGCGTAATCAGATA 59.725 41.667 19.88 0.00 37.04 1.98
9079 10581 1.800586 TCTCACAAGCTTGCGATTGAC 59.199 47.619 26.27 0.00 38.79 3.18
9082 10584 1.802960 CTGTCTCACAAGCTTGCGATT 59.197 47.619 26.27 3.68 0.00 3.34
9088 10590 3.462021 GTTGTCTCTGTCTCACAAGCTT 58.538 45.455 0.00 0.00 30.72 3.74
9094 10596 2.293677 TCTTCCGTTGTCTCTGTCTCAC 59.706 50.000 0.00 0.00 0.00 3.51
9098 10600 2.989840 CACATCTTCCGTTGTCTCTGTC 59.010 50.000 0.00 0.00 0.00 3.51
9123 10625 4.397103 CAGGTTGCATGTCACAGATACATT 59.603 41.667 0.00 0.00 35.39 2.71
9238 10783 2.069273 ACATAAGCTCGCTGTCAACAC 58.931 47.619 0.00 0.00 0.00 3.32
9239 10784 2.455674 ACATAAGCTCGCTGTCAACA 57.544 45.000 0.00 0.00 0.00 3.33
9275 10820 0.398318 GAGAGGACTTGGCAGTTGGT 59.602 55.000 0.00 0.00 31.22 3.67
9296 10841 1.134401 ACCCACCTGCAGATCATAACG 60.134 52.381 17.39 0.00 0.00 3.18
9298 10843 2.102420 CGTACCCACCTGCAGATCATAA 59.898 50.000 17.39 0.00 0.00 1.90
9379 10934 9.581289 TCAGAGACCAAATACAAAGGAAAATAA 57.419 29.630 0.00 0.00 0.00 1.40
9382 10937 7.272037 GTCAGAGACCAAATACAAAGGAAAA 57.728 36.000 0.00 0.00 0.00 2.29
9409 10964 3.362706 AGAACGGCCAAGTACATAGAGA 58.637 45.455 2.24 0.00 0.00 3.10
9410 10965 3.802948 AGAACGGCCAAGTACATAGAG 57.197 47.619 2.24 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.