Multiple sequence alignment - TraesCS5A01G493100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G493100 chr5A 100.000 4286 0 0 1 4286 662343164 662338879 0.000000e+00 7915.0
1 TraesCS5A01G493100 chr5A 100.000 30 0 0 398 427 535668299 535668328 5.990000e-04 56.5
2 TraesCS5A01G493100 chr4D 95.363 3709 126 19 586 4286 481167745 481171415 0.000000e+00 5854.0
3 TraesCS5A01G493100 chr4D 91.331 496 24 3 1 478 481166856 481167350 0.000000e+00 660.0
4 TraesCS5A01G493100 chr4D 89.655 87 9 0 3808 3894 453044642 453044728 1.260000e-20 111.0
5 TraesCS5A01G493100 chr4B 94.743 2739 72 11 1574 4268 609497204 609499914 0.000000e+00 4194.0
6 TraesCS5A01G493100 chr4B 94.349 991 36 13 541 1526 609495917 609496892 0.000000e+00 1502.0
7 TraesCS5A01G493100 chr4B 91.042 547 28 5 1 528 609495387 609495931 0.000000e+00 719.0
8 TraesCS5A01G493100 chr3D 82.851 1901 241 35 1574 3442 612903445 612901598 0.000000e+00 1626.0
9 TraesCS5A01G493100 chr3D 83.993 606 85 4 963 1556 612904035 612903430 4.810000e-159 571.0
10 TraesCS5A01G493100 chr3D 80.410 439 60 11 1978 2415 612086358 612086771 1.160000e-80 311.0
11 TraesCS5A01G493100 chr3B 82.471 1894 250 42 1574 3442 826082875 826084711 0.000000e+00 1583.0
12 TraesCS5A01G493100 chr3B 84.641 612 82 4 957 1556 826082279 826082890 2.210000e-167 599.0
13 TraesCS5A01G493100 chr3B 84.397 423 64 2 2450 2871 830369343 830369764 8.570000e-112 414.0
14 TraesCS5A01G493100 chr3A 82.682 1842 250 35 1625 3442 747627845 747626049 0.000000e+00 1570.0
15 TraesCS5A01G493100 chr3A 80.877 821 120 19 756 1556 747628672 747627869 2.830000e-171 612.0
16 TraesCS5A01G493100 chr3A 78.185 573 86 25 2108 2666 747869167 747868620 3.200000e-86 329.0
17 TraesCS5A01G493100 chrUn 88.024 167 18 2 2501 2666 184781612 184781447 3.380000e-46 196.0
18 TraesCS5A01G493100 chrUn 88.024 167 18 2 2501 2666 398649998 398650163 3.380000e-46 196.0
19 TraesCS5A01G493100 chr7D 92.135 89 7 0 3807 3895 121937433 121937345 4.500000e-25 126.0
20 TraesCS5A01G493100 chr7D 90.805 87 8 0 3807 3893 151326530 151326444 2.710000e-22 117.0
21 TraesCS5A01G493100 chr7D 89.535 86 9 0 3808 3893 446245090 446245005 4.530000e-20 110.0
22 TraesCS5A01G493100 chr1B 92.135 89 7 0 3808 3896 618697664 618697576 4.500000e-25 126.0
23 TraesCS5A01G493100 chr5B 89.888 89 9 0 3807 3895 306447598 306447510 9.740000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G493100 chr5A 662338879 662343164 4285 True 7915.000000 7915 100.0000 1 4286 1 chr5A.!!$R1 4285
1 TraesCS5A01G493100 chr4D 481166856 481171415 4559 False 3257.000000 5854 93.3470 1 4286 2 chr4D.!!$F2 4285
2 TraesCS5A01G493100 chr4B 609495387 609499914 4527 False 2138.333333 4194 93.3780 1 4268 3 chr4B.!!$F1 4267
3 TraesCS5A01G493100 chr3D 612901598 612904035 2437 True 1098.500000 1626 83.4220 963 3442 2 chr3D.!!$R1 2479
4 TraesCS5A01G493100 chr3B 826082279 826084711 2432 False 1091.000000 1583 83.5560 957 3442 2 chr3B.!!$F2 2485
5 TraesCS5A01G493100 chr3A 747626049 747628672 2623 True 1091.000000 1570 81.7795 756 3442 2 chr3A.!!$R2 2686
6 TraesCS5A01G493100 chr3A 747868620 747869167 547 True 329.000000 329 78.1850 2108 2666 1 chr3A.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 1256 0.333312 TTGGTGGAAGGTGTTGTGGT 59.667 50.0 0.00 0.00 0.00 4.16 F
1089 1423 0.473501 TGCAGGGGGCCAAGAAATTT 60.474 50.0 4.39 0.00 43.89 1.82 F
1824 2434 0.884704 ACATCCGTGGTGCAACTCAC 60.885 55.0 2.04 4.66 44.90 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2195 2805 0.595095 CTCAAAGGCTCCACTGTTGC 59.405 55.000 0.00 0.0 0.00 4.17 R
2856 3484 2.158519 ACGTGGACCTTTCTCCCATTTT 60.159 45.455 0.00 0.0 31.94 1.82 R
3818 4479 1.064060 GCTGCGACAACCAATATGGAC 59.936 52.381 2.85 0.0 40.96 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 162 2.689034 CCCTTCGCTTCTCCCCCT 60.689 66.667 0.00 0.00 0.00 4.79
280 289 1.153939 CAGAGCGACGGACCTCTTG 60.154 63.158 0.00 0.00 36.33 3.02
301 310 0.391661 GCGTCTGCAGATTCCTTCCA 60.392 55.000 21.47 0.00 42.15 3.53
310 319 2.234908 CAGATTCCTTCCACTCTCGGTT 59.765 50.000 0.00 0.00 0.00 4.44
327 336 4.331968 TCGGTTTGATTAGGTGCAGATTT 58.668 39.130 0.00 0.00 0.00 2.17
336 345 0.610232 GGTGCAGATTTGGTGCTCCT 60.610 55.000 6.34 0.00 46.52 3.69
337 346 1.251251 GTGCAGATTTGGTGCTCCTT 58.749 50.000 6.34 0.00 41.78 3.36
353 362 5.064071 GTGCTCCTTAGTGCTAGTTTGATTC 59.936 44.000 0.00 0.00 33.59 2.52
358 367 0.733150 GTGCTAGTTTGATTCCCCGC 59.267 55.000 0.00 0.00 0.00 6.13
383 402 8.844244 GCTCATGAACTGTTTATGAATATCCTT 58.156 33.333 22.93 0.00 31.11 3.36
438 457 3.923017 AAATTACAACTGCCTGCTGAC 57.077 42.857 2.88 0.00 0.00 3.51
473 492 9.474249 GTAAACTGAATACAAGCGAATAAGTTC 57.526 33.333 0.00 0.00 0.00 3.01
505 524 7.141758 TCATCCAGCAATTCTCCTAGTTAAT 57.858 36.000 0.00 0.00 0.00 1.40
618 924 1.754234 CCATTGGGCACTAGGGCAC 60.754 63.158 20.77 17.57 45.66 5.01
620 926 1.033746 CATTGGGCACTAGGGCACTG 61.034 60.000 22.24 7.52 45.66 3.66
636 942 3.058224 GGCACTGTTTGAGTTGGATGTAC 60.058 47.826 0.00 0.00 29.75 2.90
657 963 8.671384 TGTACTTATAATTCAGTTATGCACCC 57.329 34.615 0.00 0.00 34.82 4.61
658 964 8.491134 TGTACTTATAATTCAGTTATGCACCCT 58.509 33.333 0.00 0.00 34.82 4.34
659 965 7.807977 ACTTATAATTCAGTTATGCACCCTG 57.192 36.000 0.00 0.00 34.82 4.45
660 966 7.573710 ACTTATAATTCAGTTATGCACCCTGA 58.426 34.615 7.50 7.50 34.82 3.86
661 967 8.220559 ACTTATAATTCAGTTATGCACCCTGAT 58.779 33.333 11.33 2.75 35.32 2.90
662 968 6.889301 ATAATTCAGTTATGCACCCTGATG 57.111 37.500 11.33 0.00 35.32 3.07
663 969 2.715749 TCAGTTATGCACCCTGATGG 57.284 50.000 7.50 0.00 41.37 3.51
664 970 6.637958 ATAATTCAGTTATGCACCCTGATGGT 60.638 38.462 11.33 4.64 38.63 3.55
665 971 8.077226 ATAATTCAGTTATGCACCCTGATGGTT 61.077 37.037 11.33 9.68 37.10 3.67
713 1040 7.254137 TCTTCAGTTGATCTTTCGTATCTCTG 58.746 38.462 0.00 0.00 32.62 3.35
716 1043 6.151144 TCAGTTGATCTTTCGTATCTCTGTGA 59.849 38.462 0.00 0.00 32.88 3.58
730 1057 1.341209 TCTGTGACGTTCATGCACTCT 59.659 47.619 5.99 0.00 33.83 3.24
731 1058 2.556622 TCTGTGACGTTCATGCACTCTA 59.443 45.455 5.99 0.00 33.83 2.43
805 1135 8.571336 AGAGGACTGTATTTGTCAAAAATCTTG 58.429 33.333 1.31 0.00 36.26 3.02
827 1157 9.777297 TCTTGATGCTGCAATTAGTTGTATATA 57.223 29.630 6.36 0.00 37.65 0.86
897 1231 3.627395 TTGTTTGGTCACACTCTCAGT 57.373 42.857 0.00 0.00 0.00 3.41
922 1256 0.333312 TTGGTGGAAGGTGTTGTGGT 59.667 50.000 0.00 0.00 0.00 4.16
923 1257 0.333312 TGGTGGAAGGTGTTGTGGTT 59.667 50.000 0.00 0.00 0.00 3.67
943 1277 5.163612 TGGTTCTCTGTTGTCTGATATCTCG 60.164 44.000 3.98 0.00 0.00 4.04
946 1280 4.036144 TCTCTGTTGTCTGATATCTCGCTG 59.964 45.833 3.98 0.00 0.00 5.18
1089 1423 0.473501 TGCAGGGGGCCAAGAAATTT 60.474 50.000 4.39 0.00 43.89 1.82
1122 1456 1.408969 AGGCTCTCTTTCCGGATCTC 58.591 55.000 4.15 0.00 0.00 2.75
1362 1696 1.157870 CCGTGCTGTCCGACAAAACT 61.158 55.000 2.19 0.00 0.00 2.66
1761 2371 4.347607 AGCCATTCATAGCAAAAGAGGTT 58.652 39.130 0.00 0.00 0.00 3.50
1824 2434 0.884704 ACATCCGTGGTGCAACTCAC 60.885 55.000 2.04 4.66 44.90 3.51
2172 2782 1.476488 GCCAATTATGTTGGAACGCCT 59.524 47.619 14.00 0.00 42.06 5.52
2195 2805 6.095440 CCTGGTGGAACTATACCATTTTCAAG 59.905 42.308 0.00 0.00 45.28 3.02
2335 2945 6.638096 TTTTGATTGACAAGATGAAGAGCA 57.362 33.333 0.00 0.00 39.77 4.26
2466 3076 5.609423 ACTCTTGCATCAGATGATTCTACC 58.391 41.667 15.12 0.00 31.21 3.18
2483 3093 3.994392 TCTACCGCAAACAAAGATGTCTC 59.006 43.478 0.00 0.00 39.40 3.36
2509 3119 4.107072 TGATCCAGAGGAGAATGGTTCTT 58.893 43.478 0.00 0.00 40.87 2.52
2543 3171 6.258899 CAGATGCTGAAAATGAAGATGACAG 58.741 40.000 0.00 0.00 32.44 3.51
2907 3535 3.759618 TCAAAATTTATCCGCGGAAAGGT 59.240 39.130 34.66 18.82 0.00 3.50
2943 3571 0.037734 ACCGAAATTGGTCCCCTGAC 59.962 55.000 0.00 0.00 37.91 3.51
3095 3723 0.604780 CATCATCAGGACCGGGATGC 60.605 60.000 18.94 0.00 40.50 3.91
3114 3742 3.359033 TGCCATCAAGAGGATTCCAAAG 58.641 45.455 5.29 0.00 32.57 2.77
3186 3814 2.291217 GGAAGAAGCTCCAAATGTCCCT 60.291 50.000 0.00 0.00 35.36 4.20
3197 3825 4.291249 TCCAAATGTCCCTAAAGGTAGCTT 59.709 41.667 0.12 0.12 36.75 3.74
3246 3874 5.574970 AAGAACTTCTTCAGGGAATCACT 57.425 39.130 0.00 0.00 28.99 3.41
3295 3923 9.899226 GAACTTCTAAATGCTGATTAAAACAGT 57.101 29.630 12.39 0.00 37.64 3.55
3650 4291 5.009210 GTTGCTCAACATACCACTTGGTTAA 59.991 40.000 6.15 0.00 42.41 2.01
3681 4322 1.636988 GTTTGGATCGGTACTCCACG 58.363 55.000 1.92 0.00 42.43 4.94
3690 4331 1.203994 CGGTACTCCACGAACATCCTT 59.796 52.381 0.00 0.00 0.00 3.36
3727 4388 3.545703 AGCAGTACTGATATTTGTGGCC 58.454 45.455 27.08 0.00 0.00 5.36
3739 4400 1.803334 TTGTGGCCGAACAGTGTATC 58.197 50.000 0.00 0.00 0.00 2.24
3785 4446 3.951680 TCAGCGAAGTTTTTCCCTTTTCT 59.048 39.130 0.00 0.00 0.00 2.52
3794 4455 6.640518 AGTTTTTCCCTTTTCTGGAGTTTTC 58.359 36.000 0.00 0.00 32.37 2.29
3798 4459 6.867519 TTCCCTTTTCTGGAGTTTTCTTTT 57.132 33.333 0.00 0.00 32.37 2.27
3818 4479 6.882678 TCTTTTAATTCTTTTACTCCCTCCGG 59.117 38.462 0.00 0.00 0.00 5.14
3868 4540 4.271776 ACAACTTTGTACTAAAGCCGTGAC 59.728 41.667 14.06 0.00 40.16 3.67
3896 4568 1.781786 TGGATCAGAGGGAGTACTGC 58.218 55.000 5.70 5.70 34.57 4.40
3961 4641 8.049655 AGAAGAAAGTTCTTTGCAGAATATCC 57.950 34.615 7.69 0.00 46.84 2.59
3993 4673 0.465705 CAGGTATGCGGACTGTCCAT 59.534 55.000 25.42 14.97 35.91 3.41
4037 4717 4.744795 TTTGTGGGCAAAAACATGTACT 57.255 36.364 0.00 0.00 41.15 2.73
4038 4718 4.314740 TTGTGGGCAAAAACATGTACTC 57.685 40.909 0.00 0.00 0.00 2.59
4073 4753 6.708054 ACAGCTTATTATGTACAGATTGCCTC 59.292 38.462 0.33 0.00 0.00 4.70
4099 4779 1.109920 ACCTCACAGCCGCGATCTAT 61.110 55.000 8.23 0.00 0.00 1.98
4140 4820 3.521937 TGTACAACCCCTCCTATTTCCAG 59.478 47.826 0.00 0.00 0.00 3.86
4163 4843 3.494332 AGAAAAGAGTCTGGCAGCAATT 58.506 40.909 10.34 0.00 0.00 2.32
4234 4914 3.198417 TGGAGAGTGAGCAATCAAGCATA 59.802 43.478 0.61 0.00 36.85 3.14
4235 4915 4.141551 TGGAGAGTGAGCAATCAAGCATAT 60.142 41.667 0.61 0.00 36.85 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.029809 GGGGACGGGGAACAGTGG 62.030 72.222 0.00 0.00 39.51 4.00
106 107 2.269241 GGGGAAGCAGAAGACGGG 59.731 66.667 0.00 0.00 0.00 5.28
153 162 3.733960 CGACAGAGACCGGACGCA 61.734 66.667 9.46 0.00 0.00 5.24
253 262 1.065928 CGTCGCTCTGGATGGGTAC 59.934 63.158 0.00 0.00 0.00 3.34
280 289 1.285578 GAAGGAATCTGCAGACGCTC 58.714 55.000 20.97 15.43 39.64 5.03
301 310 2.301870 TGCACCTAATCAAACCGAGAGT 59.698 45.455 0.00 0.00 0.00 3.24
310 319 3.193267 GCACCAAATCTGCACCTAATCAA 59.807 43.478 0.00 0.00 34.56 2.57
327 336 1.938585 ACTAGCACTAAGGAGCACCA 58.061 50.000 2.07 0.00 38.94 4.17
336 345 3.869065 CGGGGAATCAAACTAGCACTAA 58.131 45.455 0.00 0.00 0.00 2.24
337 346 2.419574 GCGGGGAATCAAACTAGCACTA 60.420 50.000 0.00 0.00 0.00 2.74
353 362 2.107950 TAAACAGTTCATGAGCGGGG 57.892 50.000 13.68 6.11 0.00 5.73
383 402 3.820467 AGCATCAAGTCCGACAATTTTCA 59.180 39.130 0.40 0.00 0.00 2.69
490 509 6.353951 CCTGGTGGGAATTAACTAGGAGAATT 60.354 42.308 10.60 0.00 45.33 2.17
573 592 6.040278 TGACAGCAGTGGATCTAGAATTCTAG 59.960 42.308 29.34 29.34 45.57 2.43
574 593 5.893824 TGACAGCAGTGGATCTAGAATTCTA 59.106 40.000 14.42 14.42 0.00 2.10
575 594 4.713814 TGACAGCAGTGGATCTAGAATTCT 59.286 41.667 13.56 13.56 0.00 2.40
576 595 4.808364 GTGACAGCAGTGGATCTAGAATTC 59.192 45.833 0.00 0.00 0.00 2.17
577 596 4.383552 GGTGACAGCAGTGGATCTAGAATT 60.384 45.833 0.00 0.00 0.00 2.17
578 597 3.133721 GGTGACAGCAGTGGATCTAGAAT 59.866 47.826 0.00 0.00 0.00 2.40
579 598 2.497675 GGTGACAGCAGTGGATCTAGAA 59.502 50.000 0.00 0.00 0.00 2.10
591 897 2.283101 GCCCAATGGGTGACAGCA 60.283 61.111 21.02 0.00 46.51 4.41
636 942 8.509690 CATCAGGGTGCATAACTGAATTATAAG 58.490 37.037 17.86 3.94 43.65 1.73
654 960 6.054654 TGGTACAATTCCAACCATCAGGGT 62.055 45.833 0.00 0.00 46.55 4.34
655 961 3.023832 GGTACAATTCCAACCATCAGGG 58.976 50.000 0.00 0.00 44.81 4.45
656 962 3.696045 TGGTACAATTCCAACCATCAGG 58.304 45.455 0.00 0.00 38.36 3.86
701 1027 4.492791 TGAACGTCACAGAGATACGAAA 57.507 40.909 0.00 0.00 39.80 3.46
713 1040 4.045104 CCTATAGAGTGCATGAACGTCAC 58.955 47.826 0.00 0.00 0.00 3.67
716 1043 2.224066 GCCCTATAGAGTGCATGAACGT 60.224 50.000 0.00 0.00 0.00 3.99
730 1057 0.993470 AACCCAAACACCGCCCTATA 59.007 50.000 0.00 0.00 0.00 1.31
731 1058 0.113580 AAACCCAAACACCGCCCTAT 59.886 50.000 0.00 0.00 0.00 2.57
766 1093 0.901124 GTCCTCTCCAGCATGACAGT 59.099 55.000 0.00 0.00 39.69 3.55
840 1170 4.594920 TGCCCAAAAGGGATCAAATGTTAA 59.405 37.500 4.37 0.00 40.01 2.01
897 1231 0.478072 ACACCTTCCACCAATCAGCA 59.522 50.000 0.00 0.00 0.00 4.41
922 1256 4.642437 AGCGAGATATCAGACAACAGAGAA 59.358 41.667 5.32 0.00 0.00 2.87
923 1257 4.036144 CAGCGAGATATCAGACAACAGAGA 59.964 45.833 5.32 0.00 0.00 3.10
943 1277 2.765122 GCTCTCACTATGGATTCCAGC 58.235 52.381 11.78 2.66 36.75 4.85
946 1280 2.546795 CCACGCTCTCACTATGGATTCC 60.547 54.545 0.00 0.00 31.69 3.01
976 1310 2.096909 CGTCACAGCTCAAAAAGGTACG 60.097 50.000 0.00 0.00 33.36 3.67
1122 1456 4.025396 GTGATCATCTGCACAATACCTTCG 60.025 45.833 0.00 0.00 35.19 3.79
1362 1696 1.343142 TGGTCAAACAGCGCTCTCTTA 59.657 47.619 7.13 0.00 0.00 2.10
1761 2371 2.606213 TCAGGTGGTGGCATCGGA 60.606 61.111 0.00 0.00 0.00 4.55
1824 2434 1.579964 TTCTGCCAGTGCTTGCATCG 61.580 55.000 0.00 0.00 36.79 3.84
2195 2805 0.595095 CTCAAAGGCTCCACTGTTGC 59.405 55.000 0.00 0.00 0.00 4.17
2335 2945 7.516450 TCTCCTTTAGATTCTCCCTCAAATT 57.484 36.000 0.00 0.00 0.00 1.82
2466 3076 2.225019 AGCAGAGACATCTTTGTTTGCG 59.775 45.455 1.81 0.00 40.20 4.85
2483 3093 2.224329 CCATTCTCCTCTGGATCAGCAG 60.224 54.545 0.00 0.00 34.24 4.24
2543 3171 5.105310 TCAGGAACAGTATAGGAGAAAGTGC 60.105 44.000 0.00 0.00 0.00 4.40
2838 3466 7.127186 TCCCATTTTATCTGGTGAGAGAACATA 59.873 37.037 0.00 0.00 28.98 2.29
2856 3484 2.158519 ACGTGGACCTTTCTCCCATTTT 60.159 45.455 0.00 0.00 31.94 1.82
2907 3535 3.035363 TCGGTACAAAGCCCAGATATCA 58.965 45.455 5.32 0.00 0.00 2.15
3095 3723 3.053395 TCCCTTTGGAATCCTCTTGATGG 60.053 47.826 0.00 0.00 37.86 3.51
3114 3742 3.188667 GTGAAAACCGAAACATCTCTCCC 59.811 47.826 0.00 0.00 0.00 4.30
3186 3814 5.962031 TGGATCTACCTCAAAGCTACCTTTA 59.038 40.000 0.00 0.00 38.13 1.85
3197 3825 1.871418 AGCAGCTGGATCTACCTCAA 58.129 50.000 17.12 0.00 39.86 3.02
3246 3874 1.768275 TCTGCCTCCTTCACAGTTTCA 59.232 47.619 0.00 0.00 33.12 2.69
3295 3923 2.279741 GCATAACCGAGTCAGCATCAA 58.720 47.619 0.00 0.00 0.00 2.57
3650 4291 4.144297 CCGATCCAAACCATCCATAATGT 58.856 43.478 0.00 0.00 33.13 2.71
3727 4388 6.706055 AACAATACTGTGATACACTGTTCG 57.294 37.500 16.58 9.90 42.28 3.95
3739 4400 8.349245 TGACAATAAGGACAAAACAATACTGTG 58.651 33.333 0.00 0.00 35.37 3.66
3818 4479 1.064060 GCTGCGACAACCAATATGGAC 59.936 52.381 2.85 0.00 40.96 4.02
3868 4540 8.820831 AGTACTCCCTCTGATCCATATTAATTG 58.179 37.037 0.00 0.00 0.00 2.32
3896 4568 5.603170 AATGCCATTCAGGATTTGGTTAG 57.397 39.130 0.00 0.00 41.22 2.34
3961 4641 2.979813 GCATACCTGAAAACAAACAGCG 59.020 45.455 0.00 0.00 33.40 5.18
4019 4699 4.519540 ATGAGTACATGTTTTTGCCCAC 57.480 40.909 2.30 0.00 35.21 4.61
4073 4753 1.079543 CGGCTGTGAGGTCCAGAAG 60.080 63.158 0.00 0.00 31.38 2.85
4094 4774 2.553904 GCAGCTGTGGGGCATTATAGAT 60.554 50.000 16.64 0.00 34.17 1.98
4099 4779 2.438254 CGCAGCTGTGGGGCATTA 60.438 61.111 19.78 0.00 32.95 1.90
4140 4820 2.498167 TGCTGCCAGACTCTTTTCTTC 58.502 47.619 0.00 0.00 0.00 2.87
4163 4843 3.476552 CAAGTAACTGGTTCTGCCTTCA 58.523 45.455 0.00 0.00 38.35 3.02
4234 4914 2.644299 TGACACCTCAGGATTGAACCAT 59.356 45.455 0.00 0.00 31.69 3.55
4235 4915 2.054021 TGACACCTCAGGATTGAACCA 58.946 47.619 0.00 0.00 31.69 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.