Multiple sequence alignment - TraesCS5A01G491300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G491300 chr5A 100.000 2891 0 0 1 2891 660397665 660394775 0.000000e+00 5339.0
1 TraesCS5A01G491300 chr4D 93.565 2533 93 29 1 2522 482235345 482237818 0.000000e+00 3711.0
2 TraesCS5A01G491300 chr4D 83.636 220 16 6 2460 2660 482238007 482238225 3.800000e-44 189.0
3 TraesCS5A01G491300 chr4D 93.750 64 3 1 2460 2522 482237923 482237986 8.530000e-16 95.3
4 TraesCS5A01G491300 chr4D 92.188 64 4 1 2460 2522 482237839 482237902 3.970000e-14 89.8
5 TraesCS5A01G491300 chr4B 93.150 2540 102 29 1 2522 612027035 612029520 0.000000e+00 3661.0
6 TraesCS5A01G491300 chr4B 83.573 487 22 23 2461 2891 612029685 612030169 1.250000e-108 403.0
7 TraesCS5A01G491300 chr4B 88.991 109 10 2 2416 2522 612029559 612029667 1.810000e-27 134.0
8 TraesCS5A01G491300 chr2A 93.519 108 1 6 2518 2621 18343414 18343519 3.860000e-34 156.0
9 TraesCS5A01G491300 chr2A 92.233 103 3 5 2519 2621 136334707 136334610 1.080000e-29 141.0
10 TraesCS5A01G491300 chr2A 87.097 124 10 5 2529 2648 501848379 501848258 5.020000e-28 135.0
11 TraesCS5A01G491300 chr1B 95.876 97 3 1 2527 2623 555636605 555636700 3.860000e-34 156.0
12 TraesCS5A01G491300 chr1A 93.939 99 2 4 2518 2616 508639725 508639819 2.320000e-31 147.0
13 TraesCS5A01G491300 chr2B 92.079 101 5 3 2511 2611 767684970 767685067 3.880000e-29 139.0
14 TraesCS5A01G491300 chr2D 85.606 132 13 6 2485 2614 16362302 16362429 1.810000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G491300 chr5A 660394775 660397665 2890 True 5339.000000 5339 100.000000 1 2891 1 chr5A.!!$R1 2890
1 TraesCS5A01G491300 chr4D 482235345 482238225 2880 False 1021.275000 3711 90.784750 1 2660 4 chr4D.!!$F1 2659
2 TraesCS5A01G491300 chr4B 612027035 612030169 3134 False 1399.333333 3661 88.571333 1 2891 3 chr4B.!!$F1 2890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.106708 TCTTATGCTGCCATCGGGTC 59.893 55.0 0.0 0.0 36.17 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1965 1977 0.46362 GCAGGGATCTCACTCAGACC 59.536 60.0 0.0 0.0 32.26 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 0.106708 TCTTATGCTGCCATCGGGTC 59.893 55.000 0.00 0.00 36.17 4.46
118 119 1.115467 CCCCGAGCTTGAGATACAGT 58.885 55.000 1.22 0.00 0.00 3.55
423 424 7.800092 AGGACTAATTCTTGATGTTCTGCTAT 58.200 34.615 0.00 0.00 0.00 2.97
629 635 8.134895 TGAATAAATGGCTATTTTGGTCGAATC 58.865 33.333 13.63 0.00 37.64 2.52
633 639 5.092554 TGGCTATTTTGGTCGAATCACTA 57.907 39.130 0.00 0.00 0.00 2.74
639 645 7.012421 GCTATTTTGGTCGAATCACTAATTCCT 59.988 37.037 0.00 0.00 40.69 3.36
744 750 1.027357 CGCTCTGATTGGGAAATGGG 58.973 55.000 0.00 0.00 0.00 4.00
783 789 4.165372 TGGTCAGACCTAAACACTCCTTTT 59.835 41.667 20.82 0.00 39.58 2.27
789 795 7.996644 TCAGACCTAAACACTCCTTTTATTTGT 59.003 33.333 0.00 0.00 0.00 2.83
794 800 6.994421 AAACACTCCTTTTATTTGTGGGAT 57.006 33.333 0.00 0.00 33.44 3.85
833 842 7.450014 TGTTATTGTCCAATGGTGTATCAACTT 59.550 33.333 0.00 0.00 32.50 2.66
834 843 6.916360 ATTGTCCAATGGTGTATCAACTTT 57.084 33.333 0.00 0.00 0.00 2.66
835 844 6.723298 TTGTCCAATGGTGTATCAACTTTT 57.277 33.333 0.00 0.00 0.00 2.27
924 933 5.370880 AGCTCATCTAACCCACAATATCCTT 59.629 40.000 0.00 0.00 0.00 3.36
925 934 5.703130 GCTCATCTAACCCACAATATCCTTC 59.297 44.000 0.00 0.00 0.00 3.46
987 996 1.007118 AGATTTCATCCCCAACCCACC 59.993 52.381 0.00 0.00 0.00 4.61
988 997 0.789687 ATTTCATCCCCAACCCACCA 59.210 50.000 0.00 0.00 0.00 4.17
989 998 0.563173 TTTCATCCCCAACCCACCAA 59.437 50.000 0.00 0.00 0.00 3.67
990 999 0.789687 TTCATCCCCAACCCACCAAT 59.210 50.000 0.00 0.00 0.00 3.16
1128 1137 2.268920 GCGATCTCCACCAAGCCA 59.731 61.111 0.00 0.00 0.00 4.75
1129 1138 1.153086 GCGATCTCCACCAAGCCAT 60.153 57.895 0.00 0.00 0.00 4.40
1131 1140 0.178767 CGATCTCCACCAAGCCATCA 59.821 55.000 0.00 0.00 0.00 3.07
1176 1185 1.006922 GGCCAAGCTTGTTGTCAGC 60.007 57.895 24.35 18.17 0.00 4.26
1233 1242 2.668457 CCTACAAGACATGTCACGCTTC 59.332 50.000 27.02 0.00 42.70 3.86
1455 1467 0.179161 CGGAGGACTACAGCAACTCG 60.179 60.000 0.00 0.00 0.00 4.18
1550 1562 1.065926 TGATGACCATGAGCTGACCAC 60.066 52.381 0.00 0.00 0.00 4.16
1551 1563 0.254178 ATGACCATGAGCTGACCACC 59.746 55.000 0.00 0.00 0.00 4.61
1552 1564 1.126948 TGACCATGAGCTGACCACCA 61.127 55.000 0.00 0.00 0.00 4.17
1553 1565 0.036732 GACCATGAGCTGACCACCAA 59.963 55.000 0.00 0.00 0.00 3.67
1554 1566 0.250901 ACCATGAGCTGACCACCAAC 60.251 55.000 0.00 0.00 0.00 3.77
1555 1567 0.962356 CCATGAGCTGACCACCAACC 60.962 60.000 0.00 0.00 0.00 3.77
1556 1568 1.003355 ATGAGCTGACCACCAACCG 60.003 57.895 0.00 0.00 0.00 4.44
1559 1571 4.947147 GCTGACCACCAACCGGCA 62.947 66.667 0.00 0.00 34.57 5.69
1674 1686 4.851214 AGCCTCTCCCCCTCGCTC 62.851 72.222 0.00 0.00 0.00 5.03
1705 1717 4.871557 TGGTAATAATGCCGTACACACTTC 59.128 41.667 0.00 0.00 33.27 3.01
1706 1718 4.871557 GGTAATAATGCCGTACACACTTCA 59.128 41.667 0.00 0.00 0.00 3.02
1707 1719 4.939509 AATAATGCCGTACACACTTCAC 57.060 40.909 0.00 0.00 0.00 3.18
1708 1720 2.248280 AATGCCGTACACACTTCACA 57.752 45.000 0.00 0.00 0.00 3.58
1709 1721 1.508632 ATGCCGTACACACTTCACAC 58.491 50.000 0.00 0.00 0.00 3.82
1710 1722 0.462375 TGCCGTACACACTTCACACT 59.538 50.000 0.00 0.00 0.00 3.55
1764 1776 9.326413 GTACATCTGCACCAGTTAATAGTTAAT 57.674 33.333 0.00 0.00 32.61 1.40
1814 1826 3.624777 CTCCTGTTAATGGGCAGTGATT 58.375 45.455 0.00 0.00 0.00 2.57
1895 1907 9.783256 GTTTTTAATTGTGTGTTCTTAGTGAGT 57.217 29.630 0.00 0.00 0.00 3.41
1944 1956 3.479269 GCGAGCTGTACCGTGTGC 61.479 66.667 0.00 0.00 0.00 4.57
1962 1974 3.286751 GCATGTGCGTGTGGGTGT 61.287 61.111 0.00 0.00 0.00 4.16
1963 1975 2.638719 CATGTGCGTGTGGGTGTG 59.361 61.111 0.00 0.00 0.00 3.82
1964 1976 1.891449 CATGTGCGTGTGGGTGTGA 60.891 57.895 0.00 0.00 0.00 3.58
1965 1977 1.597854 ATGTGCGTGTGGGTGTGAG 60.598 57.895 0.00 0.00 0.00 3.51
1966 1978 2.972505 GTGCGTGTGGGTGTGAGG 60.973 66.667 0.00 0.00 0.00 3.86
1967 1979 3.475494 TGCGTGTGGGTGTGAGGT 61.475 61.111 0.00 0.00 0.00 3.85
1968 1980 2.665185 GCGTGTGGGTGTGAGGTC 60.665 66.667 0.00 0.00 0.00 3.85
1969 1981 3.138625 CGTGTGGGTGTGAGGTCT 58.861 61.111 0.00 0.00 0.00 3.85
1970 1982 1.300931 CGTGTGGGTGTGAGGTCTG 60.301 63.158 0.00 0.00 0.00 3.51
1984 2001 0.463620 GGTCTGAGTGAGATCCCTGC 59.536 60.000 0.00 0.00 31.63 4.85
1985 2002 1.189752 GTCTGAGTGAGATCCCTGCA 58.810 55.000 0.00 0.00 31.63 4.41
1987 2004 2.037901 TCTGAGTGAGATCCCTGCATC 58.962 52.381 0.00 0.00 0.00 3.91
1998 2015 1.071228 TCCCTGCATCTGATTGATCGG 59.929 52.381 0.00 0.00 32.05 4.18
2066 2083 5.441709 GTAGAAGCCTACTTACTAGCTGG 57.558 47.826 0.00 0.00 41.52 4.85
2170 2190 7.084486 AGATAAACAAACGCTGGATTTCTTTC 58.916 34.615 0.00 0.00 0.00 2.62
2179 2201 4.272018 CGCTGGATTTCTTTCTGTATCAGG 59.728 45.833 0.00 0.00 31.51 3.86
2195 2220 1.677576 TCAGGTTGCTGTTGCTTCTTG 59.322 47.619 0.00 0.00 40.48 3.02
2241 2266 5.417811 TGTTCATTTGTGCATCTGTTTGTT 58.582 33.333 0.00 0.00 0.00 2.83
2247 2272 4.291540 TGTGCATCTGTTTGTTTGAGAC 57.708 40.909 0.00 0.00 0.00 3.36
2261 2286 2.839486 TGAGACGGAGCAACAAAGAT 57.161 45.000 0.00 0.00 0.00 2.40
2273 2298 4.101430 AGCAACAAAGATTTTGTGGTGGAT 59.899 37.500 7.84 0.00 32.22 3.41
2307 2333 6.456501 ACTAGCTCGATCTGTTTTGTTAAGT 58.543 36.000 0.00 0.00 0.00 2.24
2393 2421 8.734386 GTTCATATTCAGGAATCTTTTCTGTGT 58.266 33.333 0.00 0.00 32.50 3.72
2403 2431 1.342174 CTTTTCTGTGTGCAGCCCAAT 59.658 47.619 0.00 0.00 42.29 3.16
2417 2445 3.764885 GCCCAATGCTAACTTGTAGTG 57.235 47.619 0.00 0.00 36.87 2.74
2627 2933 1.025041 GCTTTGGTAGCTATGGCACC 58.975 55.000 3.10 9.55 46.77 5.01
2630 2936 1.578897 TTGGTAGCTATGGCACCAGA 58.421 50.000 19.19 11.54 44.16 3.86
2633 2939 1.069358 GGTAGCTATGGCACCAGAGAC 59.931 57.143 15.36 5.19 37.45 3.36
2634 2940 2.035632 GTAGCTATGGCACCAGAGACT 58.964 52.381 15.36 12.93 37.45 3.24
2635 2941 1.577736 AGCTATGGCACCAGAGACTT 58.422 50.000 15.36 0.00 37.45 3.01
2636 2942 2.752030 AGCTATGGCACCAGAGACTTA 58.248 47.619 15.36 0.00 37.45 2.24
2643 2949 7.547370 GCTATGGCACCAGAGACTTATTAATAG 59.453 40.741 15.36 0.00 37.45 1.73
2678 3007 3.558418 TGTCTACCGAACAAGAAAGTTGC 59.442 43.478 0.00 0.00 0.00 4.17
2683 3012 3.181458 ACCGAACAAGAAAGTTGCTAGGA 60.181 43.478 0.00 0.00 0.00 2.94
2689 3018 5.298347 ACAAGAAAGTTGCTAGGACACTAC 58.702 41.667 0.00 0.00 0.00 2.73
2699 3028 0.966920 AGGACACTACTTGACACGGG 59.033 55.000 0.00 0.00 0.00 5.28
2735 3064 1.769733 CACCCGCTGACACAAAATTG 58.230 50.000 0.00 0.00 0.00 2.32
2795 3137 6.240549 TCTCCCTCAAATCTTCATAACTCC 57.759 41.667 0.00 0.00 0.00 3.85
2888 3230 1.661463 AAGGCATCTCCAGGTCTTGA 58.339 50.000 0.00 0.00 37.29 3.02
2889 3231 1.890552 AGGCATCTCCAGGTCTTGAT 58.109 50.000 0.00 0.00 37.29 2.57
2890 3232 3.051940 AGGCATCTCCAGGTCTTGATA 57.948 47.619 0.00 0.00 37.29 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 2.111878 CTAGCTCCGGGGCAATGG 59.888 66.667 31.81 6.85 34.17 3.16
118 119 7.171508 CCAAAGCTAAATACATCGCTCTTATCA 59.828 37.037 0.00 0.00 31.30 2.15
237 238 4.501571 CCGATTTAGTACCATCCTCCAGTG 60.502 50.000 0.00 0.00 0.00 3.66
423 424 6.373759 TCCTATTCTGCTACTATGTTCCAGA 58.626 40.000 0.00 0.00 0.00 3.86
518 524 5.135362 AGGACTGGGGCCACAATAATAATAA 59.865 40.000 10.16 0.00 0.00 1.40
519 525 4.667858 AGGACTGGGGCCACAATAATAATA 59.332 41.667 10.16 0.00 0.00 0.98
520 526 3.467103 AGGACTGGGGCCACAATAATAAT 59.533 43.478 10.16 0.00 0.00 1.28
590 596 6.830324 AGCCATTTATTCAGCAAACAGATCTA 59.170 34.615 0.00 0.00 0.00 1.98
744 750 6.094186 GGTCTGACCATGAAGATAAAAGGTTC 59.906 42.308 21.70 0.00 38.42 3.62
783 789 4.540099 ACTCCTCTTTGGATCCCACAAATA 59.460 41.667 9.90 0.00 45.16 1.40
789 795 2.348472 ACAACTCCTCTTTGGATCCCA 58.652 47.619 9.90 0.00 45.16 4.37
794 800 5.163141 TGGACAATAACAACTCCTCTTTGGA 60.163 40.000 0.00 0.00 43.86 3.53
812 818 6.723298 AAAAGTTGATACACCATTGGACAA 57.277 33.333 10.37 5.07 0.00 3.18
924 933 7.731235 TGTATTTAGTGCTGGTATATGTAGGGA 59.269 37.037 0.00 0.00 0.00 4.20
925 934 7.903145 TGTATTTAGTGCTGGTATATGTAGGG 58.097 38.462 0.00 0.00 0.00 3.53
987 996 3.243501 CCTCGGCCATTTGGAATGTATTG 60.244 47.826 2.24 0.00 37.39 1.90
988 997 2.958355 CCTCGGCCATTTGGAATGTATT 59.042 45.455 2.24 0.00 37.39 1.89
989 998 2.174639 TCCTCGGCCATTTGGAATGTAT 59.825 45.455 2.24 0.00 37.39 2.29
990 999 1.562008 TCCTCGGCCATTTGGAATGTA 59.438 47.619 2.24 0.00 37.39 2.29
1128 1137 2.909006 ACATGAGAAGACTGTGGGTGAT 59.091 45.455 0.00 0.00 0.00 3.06
1129 1138 2.300152 GACATGAGAAGACTGTGGGTGA 59.700 50.000 0.00 0.00 0.00 4.02
1131 1140 1.625818 GGACATGAGAAGACTGTGGGT 59.374 52.381 0.00 0.00 0.00 4.51
1176 1185 1.303236 TTCCCACTGGAATGGCACG 60.303 57.895 0.00 0.00 45.88 5.34
1233 1242 2.961721 CGATCGGACGGTGCATGG 60.962 66.667 7.38 0.00 0.00 3.66
1455 1467 2.435059 GCAGAGGTGTTCCCGCTC 60.435 66.667 0.00 0.00 42.14 5.03
1559 1571 2.441901 CGCTCCTCAGAGGGCTCT 60.442 66.667 17.10 0.00 44.96 4.09
1674 1686 2.767505 GGCATTATTACCACGGAGGAG 58.232 52.381 2.94 0.00 41.22 3.69
1705 1717 4.037690 GCAAAGCTCAGTGTAAAAGTGTG 58.962 43.478 0.00 0.00 0.00 3.82
1706 1718 3.947834 AGCAAAGCTCAGTGTAAAAGTGT 59.052 39.130 0.00 0.00 30.62 3.55
1707 1719 4.558538 AGCAAAGCTCAGTGTAAAAGTG 57.441 40.909 0.00 0.00 30.62 3.16
1708 1720 4.640201 TCAAGCAAAGCTCAGTGTAAAAGT 59.360 37.500 0.00 0.00 38.25 2.66
1709 1721 5.173774 TCAAGCAAAGCTCAGTGTAAAAG 57.826 39.130 0.00 0.00 38.25 2.27
1710 1722 5.772825 ATCAAGCAAAGCTCAGTGTAAAA 57.227 34.783 0.00 0.00 38.25 1.52
1764 1776 1.070134 GGCACAGTGTAGTCTGTCCAA 59.930 52.381 1.61 0.00 45.37 3.53
1771 1783 0.605589 GTTGGGGGCACAGTGTAGTC 60.606 60.000 1.61 0.00 0.00 2.59
1773 1785 0.606401 CAGTTGGGGGCACAGTGTAG 60.606 60.000 1.61 0.00 0.00 2.74
1775 1787 2.195683 CAGTTGGGGGCACAGTGT 59.804 61.111 1.61 0.00 0.00 3.55
1814 1826 3.576078 ACATGAGGGACAGACAAACAA 57.424 42.857 0.00 0.00 0.00 2.83
1919 1931 2.125147 TACAGCTCGCCCATGTGC 60.125 61.111 0.00 0.00 0.00 4.57
1927 1939 3.479269 GCACACGGTACAGCTCGC 61.479 66.667 0.00 0.00 0.00 5.03
1958 1970 1.621992 TCTCACTCAGACCTCACACC 58.378 55.000 0.00 0.00 0.00 4.16
1959 1971 2.165437 GGATCTCACTCAGACCTCACAC 59.835 54.545 0.00 0.00 32.26 3.82
1960 1972 2.451490 GGATCTCACTCAGACCTCACA 58.549 52.381 0.00 0.00 32.26 3.58
1961 1973 1.754226 GGGATCTCACTCAGACCTCAC 59.246 57.143 0.00 0.00 32.26 3.51
1962 1974 1.643286 AGGGATCTCACTCAGACCTCA 59.357 52.381 0.00 0.00 32.26 3.86
1963 1975 2.031120 CAGGGATCTCACTCAGACCTC 58.969 57.143 0.00 0.00 32.26 3.85
1964 1976 1.964344 GCAGGGATCTCACTCAGACCT 60.964 57.143 0.00 0.00 32.26 3.85
1965 1977 0.463620 GCAGGGATCTCACTCAGACC 59.536 60.000 0.00 0.00 32.26 3.85
1966 1978 1.189752 TGCAGGGATCTCACTCAGAC 58.810 55.000 0.00 0.00 32.26 3.51
1967 1979 2.037901 GATGCAGGGATCTCACTCAGA 58.962 52.381 0.00 0.00 34.78 3.27
1968 1980 2.040939 AGATGCAGGGATCTCACTCAG 58.959 52.381 0.00 0.00 0.00 3.35
1969 1981 1.761198 CAGATGCAGGGATCTCACTCA 59.239 52.381 0.00 0.00 29.72 3.41
1970 1982 2.037901 TCAGATGCAGGGATCTCACTC 58.962 52.381 0.00 0.00 29.72 3.51
1984 2001 3.758755 TCTTCCCCGATCAATCAGATG 57.241 47.619 0.00 0.00 37.00 2.90
1985 2002 3.495806 GCTTCTTCCCCGATCAATCAGAT 60.496 47.826 0.00 0.00 40.48 2.90
1987 2004 2.158842 AGCTTCTTCCCCGATCAATCAG 60.159 50.000 0.00 0.00 0.00 2.90
2057 2074 2.892640 CACGCAGGCCAGCTAGTA 59.107 61.111 18.87 0.00 0.00 1.82
2058 2075 4.767255 GCACGCAGGCCAGCTAGT 62.767 66.667 18.87 6.71 0.00 2.57
2059 2076 4.463879 AGCACGCAGGCCAGCTAG 62.464 66.667 18.87 11.15 35.19 3.42
2060 2077 4.765449 CAGCACGCAGGCCAGCTA 62.765 66.667 18.87 0.00 35.19 3.32
2157 2177 5.189180 ACCTGATACAGAAAGAAATCCAGC 58.811 41.667 0.00 0.00 32.44 4.85
2170 2190 2.430465 AGCAACAGCAACCTGATACAG 58.570 47.619 0.00 0.00 41.77 2.74
2179 2201 5.796935 CACATATACAAGAAGCAACAGCAAC 59.203 40.000 0.00 0.00 0.00 4.17
2195 2220 6.989169 ACAAGAAGCAGAATCTCCACATATAC 59.011 38.462 0.00 0.00 0.00 1.47
2241 2266 2.613026 TCTTTGTTGCTCCGTCTCAA 57.387 45.000 0.00 0.00 0.00 3.02
2247 2272 3.052036 CCACAAAATCTTTGTTGCTCCG 58.948 45.455 2.06 0.00 0.00 4.63
2261 2286 6.352516 AGTTGCAAAATAATCCACCACAAAA 58.647 32.000 0.00 0.00 0.00 2.44
2273 2298 5.874810 ACAGATCGAGCTAGTTGCAAAATAA 59.125 36.000 1.25 0.00 45.94 1.40
2403 2431 6.969993 AAAAATTCCCACTACAAGTTAGCA 57.030 33.333 0.00 0.00 0.00 3.49
2417 2445 9.907229 CCCTCATATATCCTACTAAAAATTCCC 57.093 37.037 0.00 0.00 0.00 3.97
2461 2489 0.326264 AGCCTTGTGTCTGGATCACC 59.674 55.000 0.00 0.00 35.25 4.02
2463 2491 1.059098 ACAGCCTTGTGTCTGGATCA 58.941 50.000 0.00 0.00 35.83 2.92
2464 2492 1.808945 CAACAGCCTTGTGTCTGGATC 59.191 52.381 0.00 0.00 37.67 3.36
2522 2810 7.307632 CCTCCTTCTAGCGATATTTTTGTCATG 60.308 40.741 0.00 0.00 0.00 3.07
2523 2811 6.708054 CCTCCTTCTAGCGATATTTTTGTCAT 59.292 38.462 0.00 0.00 0.00 3.06
2524 2812 6.049149 CCTCCTTCTAGCGATATTTTTGTCA 58.951 40.000 0.00 0.00 0.00 3.58
2525 2813 5.467063 CCCTCCTTCTAGCGATATTTTTGTC 59.533 44.000 0.00 0.00 0.00 3.18
2526 2814 5.368989 CCCTCCTTCTAGCGATATTTTTGT 58.631 41.667 0.00 0.00 0.00 2.83
2527 2815 4.214332 GCCCTCCTTCTAGCGATATTTTTG 59.786 45.833 0.00 0.00 0.00 2.44
2614 2920 2.035632 AGTCTCTGGTGCCATAGCTAC 58.964 52.381 0.00 0.00 40.80 3.58
2616 2922 1.577736 AAGTCTCTGGTGCCATAGCT 58.422 50.000 0.00 0.00 40.80 3.32
2649 2955 6.769134 TTCTTGTTCGGTAGACATAGATCA 57.231 37.500 0.00 0.00 0.00 2.92
2650 2956 7.259161 ACTTTCTTGTTCGGTAGACATAGATC 58.741 38.462 0.00 0.00 0.00 2.75
2651 2957 7.171630 ACTTTCTTGTTCGGTAGACATAGAT 57.828 36.000 0.00 0.00 0.00 1.98
2653 2959 6.401153 GCAACTTTCTTGTTCGGTAGACATAG 60.401 42.308 0.00 0.00 0.00 2.23
2655 2961 4.213482 GCAACTTTCTTGTTCGGTAGACAT 59.787 41.667 0.00 0.00 0.00 3.06
2657 2963 3.808174 AGCAACTTTCTTGTTCGGTAGAC 59.192 43.478 0.00 0.00 0.00 2.59
2659 2965 4.389077 CCTAGCAACTTTCTTGTTCGGTAG 59.611 45.833 0.00 0.00 0.00 3.18
2670 2999 5.405873 GTCAAGTAGTGTCCTAGCAACTTTC 59.594 44.000 0.00 0.00 0.00 2.62
2678 3007 2.163815 CCCGTGTCAAGTAGTGTCCTAG 59.836 54.545 0.00 0.00 0.00 3.02
2683 3012 1.006571 CGCCCGTGTCAAGTAGTGT 60.007 57.895 0.00 0.00 0.00 3.55
2689 3018 3.049674 ACATGCGCCCGTGTCAAG 61.050 61.111 4.18 0.00 36.48 3.02
2720 3049 1.782569 CAGTGCAATTTTGTGTCAGCG 59.217 47.619 0.00 0.00 0.00 5.18
2758 3100 5.649782 TGAGGGAGAATTCAAAATGCTTC 57.350 39.130 8.44 0.00 0.00 3.86
2768 3110 8.744568 AGTTATGAAGATTTGAGGGAGAATTC 57.255 34.615 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.