Multiple sequence alignment - TraesCS5A01G490900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G490900 chr5A 100.000 3269 0 0 1 3269 659881443 659878175 0.000000e+00 6037.0
1 TraesCS5A01G490900 chr5A 94.898 98 4 1 1 97 638636928 638636831 5.650000e-33 152.0
2 TraesCS5A01G490900 chr4B 90.887 2491 130 36 506 2954 612259554 612261989 0.000000e+00 3253.0
3 TraesCS5A01G490900 chr4B 85.185 135 6 8 201 326 612259437 612259566 3.420000e-25 126.0
4 TraesCS5A01G490900 chr4D 91.125 2355 96 44 506 2820 482689539 482691820 0.000000e+00 3086.0
5 TraesCS5A01G490900 chr4D 85.579 423 33 16 2805 3209 482691840 482692252 5.040000e-113 418.0
6 TraesCS5A01G490900 chr4D 88.760 258 7 4 89 328 482689300 482689553 2.470000e-76 296.0
7 TraesCS5A01G490900 chrUn 84.582 467 63 4 1366 1824 91652912 91652447 3.850000e-124 455.0
8 TraesCS5A01G490900 chrUn 84.468 470 64 4 1363 1824 239778791 239779259 3.850000e-124 455.0
9 TraesCS5A01G490900 chr6B 97.927 193 1 3 327 517 559355199 559355008 6.760000e-87 331.0
10 TraesCS5A01G490900 chr6B 97.790 181 4 0 329 509 713948479 713948299 2.450000e-81 313.0
11 TraesCS5A01G490900 chr6B 100.000 30 0 0 1940 1969 89566059 89566030 4.560000e-04 56.5
12 TraesCS5A01G490900 chr6A 99.451 182 0 1 329 510 70570817 70570997 2.430000e-86 329.0
13 TraesCS5A01G490900 chr6A 98.907 183 1 1 329 511 326797554 326797735 3.150000e-85 326.0
14 TraesCS5A01G490900 chr2B 96.277 188 3 4 329 516 511131498 511131681 4.100000e-79 305.0
15 TraesCS5A01G490900 chr2A 96.175 183 4 3 329 510 15814826 15815006 2.470000e-76 296.0
16 TraesCS5A01G490900 chr2A 96.154 182 4 3 329 509 15369551 15369372 8.870000e-76 294.0
17 TraesCS5A01G490900 chr2A 95.628 183 7 1 329 510 14572819 14573001 3.190000e-75 292.0
18 TraesCS5A01G490900 chr2A 95.135 185 7 2 329 512 15364363 15364180 1.150000e-74 291.0
19 TraesCS5A01G490900 chr2A 97.778 90 2 0 1 90 695287283 695287194 4.370000e-34 156.0
20 TraesCS5A01G490900 chr7D 85.159 283 34 4 1289 1571 390219704 390219978 1.920000e-72 283.0
21 TraesCS5A01G490900 chr3B 96.842 95 2 1 1 95 432599440 432599533 1.210000e-34 158.0
22 TraesCS5A01G490900 chr3B 92.929 99 7 0 1 99 501121420 501121322 9.450000e-31 145.0
23 TraesCS5A01G490900 chr7B 78.189 243 53 0 1805 2047 748457718 748457960 4.370000e-34 156.0
24 TraesCS5A01G490900 chr3A 97.778 90 2 0 1 90 601354727 601354816 4.370000e-34 156.0
25 TraesCS5A01G490900 chr3A 94.737 95 5 0 1 95 747093258 747093352 7.310000e-32 148.0
26 TraesCS5A01G490900 chr3A 94.737 95 5 0 1 95 747114134 747114228 7.310000e-32 148.0
27 TraesCS5A01G490900 chr5B 96.667 90 3 0 1 90 546872681 546872770 2.030000e-32 150.0
28 TraesCS5A01G490900 chr1A 91.589 107 8 1 1 107 587662650 587662755 2.630000e-31 147.0
29 TraesCS5A01G490900 chr1B 86.301 73 10 0 1290 1362 561545958 561546030 2.700000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G490900 chr5A 659878175 659881443 3268 True 6037.000000 6037 100.000 1 3269 1 chr5A.!!$R2 3268
1 TraesCS5A01G490900 chr4B 612259437 612261989 2552 False 1689.500000 3253 88.036 201 2954 2 chr4B.!!$F1 2753
2 TraesCS5A01G490900 chr4D 482689300 482692252 2952 False 1266.666667 3086 88.488 89 3209 3 chr4D.!!$F1 3120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 393 0.110328 GTCGACTGAGACTTCGCGAA 60.11 55.0 22.01 22.01 38.09 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 2407 0.465097 ATGGCTGAAAGAGGATGGCG 60.465 55.0 0.0 0.0 34.07 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.457436 AAACTTTGACTTAGAACAAAACCTAGA 57.543 29.630 0.00 0.00 35.95 2.43
61 62 9.628500 AACTTTGACTTAGAACAAAACCTAGAT 57.372 29.630 0.00 0.00 35.95 1.98
62 63 9.057089 ACTTTGACTTAGAACAAAACCTAGATG 57.943 33.333 0.00 0.00 35.95 2.90
63 64 8.974060 TTTGACTTAGAACAAAACCTAGATGT 57.026 30.769 0.00 0.00 33.90 3.06
65 66 9.485206 TTGACTTAGAACAAAACCTAGATGTAC 57.515 33.333 0.00 0.00 0.00 2.90
66 67 8.644216 TGACTTAGAACAAAACCTAGATGTACA 58.356 33.333 0.00 0.00 0.00 2.90
67 68 9.654663 GACTTAGAACAAAACCTAGATGTACAT 57.345 33.333 8.43 8.43 0.00 2.29
75 76 8.395633 ACAAAACCTAGATGTACATTTATTCGC 58.604 33.333 10.30 0.00 0.00 4.70
76 77 6.764877 AACCTAGATGTACATTTATTCGCG 57.235 37.500 10.30 0.00 0.00 5.87
77 78 5.227908 ACCTAGATGTACATTTATTCGCGG 58.772 41.667 10.30 8.21 0.00 6.46
78 79 5.010314 ACCTAGATGTACATTTATTCGCGGA 59.990 40.000 10.30 0.00 0.00 5.54
79 80 5.345202 CCTAGATGTACATTTATTCGCGGAC 59.655 44.000 10.30 0.00 0.00 4.79
80 81 3.734231 AGATGTACATTTATTCGCGGACG 59.266 43.478 10.30 0.00 42.01 4.79
81 82 2.195096 TGTACATTTATTCGCGGACGG 58.805 47.619 6.13 0.00 40.63 4.79
82 83 2.159268 TGTACATTTATTCGCGGACGGA 60.159 45.455 6.13 0.00 40.63 4.69
83 84 1.567504 ACATTTATTCGCGGACGGAG 58.432 50.000 6.13 0.00 40.63 4.63
84 85 0.859232 CATTTATTCGCGGACGGAGG 59.141 55.000 6.13 0.00 40.63 4.30
85 86 0.249741 ATTTATTCGCGGACGGAGGG 60.250 55.000 6.13 0.00 40.63 4.30
86 87 1.321805 TTTATTCGCGGACGGAGGGA 61.322 55.000 6.13 0.00 40.63 4.20
87 88 1.731433 TTATTCGCGGACGGAGGGAG 61.731 60.000 6.13 0.00 40.63 4.30
109 110 2.906354 ACGTGACAAAGAAGCAGACTT 58.094 42.857 0.00 0.00 39.43 3.01
222 241 2.849294 ACAGAGAGGAAAACAGAGCC 57.151 50.000 0.00 0.00 0.00 4.70
241 265 1.742768 GACTCGCCTCGGATTCCAT 59.257 57.895 3.09 0.00 0.00 3.41
243 267 1.043116 ACTCGCCTCGGATTCCATCA 61.043 55.000 3.09 0.00 0.00 3.07
244 268 0.598680 CTCGCCTCGGATTCCATCAC 60.599 60.000 3.09 0.00 0.00 3.06
245 269 1.043116 TCGCCTCGGATTCCATCACT 61.043 55.000 3.09 0.00 0.00 3.41
246 270 0.673985 CGCCTCGGATTCCATCACTA 59.326 55.000 3.09 0.00 0.00 2.74
287 311 3.603532 TGTCAGCACTGATCAATCTTCC 58.396 45.455 3.24 0.00 42.18 3.46
289 313 1.938577 CAGCACTGATCAATCTTCCGG 59.061 52.381 0.00 0.00 0.00 5.14
314 342 1.306654 TCTCCACCCTAACGGCCAT 60.307 57.895 2.24 0.00 33.26 4.40
328 356 7.333672 CCCTAACGGCCATACTATTATTTCTTC 59.666 40.741 2.24 0.00 0.00 2.87
329 357 6.780706 AACGGCCATACTATTATTTCTTCG 57.219 37.500 2.24 0.00 0.00 3.79
330 358 5.235516 ACGGCCATACTATTATTTCTTCGG 58.764 41.667 2.24 0.00 0.00 4.30
331 359 4.092968 CGGCCATACTATTATTTCTTCGGC 59.907 45.833 2.24 0.00 35.05 5.54
332 360 5.246307 GGCCATACTATTATTTCTTCGGCT 58.754 41.667 0.00 0.00 36.09 5.52
333 361 5.705905 GGCCATACTATTATTTCTTCGGCTT 59.294 40.000 0.00 0.00 36.09 4.35
334 362 6.206829 GGCCATACTATTATTTCTTCGGCTTT 59.793 38.462 0.00 0.00 36.09 3.51
335 363 7.078228 GCCATACTATTATTTCTTCGGCTTTG 58.922 38.462 0.00 0.00 33.03 2.77
336 364 7.078228 CCATACTATTATTTCTTCGGCTTTGC 58.922 38.462 0.00 0.00 0.00 3.68
337 365 7.041098 CCATACTATTATTTCTTCGGCTTTGCT 60.041 37.037 0.00 0.00 0.00 3.91
338 366 8.988934 CATACTATTATTTCTTCGGCTTTGCTA 58.011 33.333 0.00 0.00 0.00 3.49
339 367 7.859325 ACTATTATTTCTTCGGCTTTGCTAA 57.141 32.000 0.00 0.00 0.00 3.09
340 368 8.276252 ACTATTATTTCTTCGGCTTTGCTAAA 57.724 30.769 0.00 0.00 0.00 1.85
341 369 8.736244 ACTATTATTTCTTCGGCTTTGCTAAAA 58.264 29.630 0.00 0.00 0.00 1.52
342 370 9.567848 CTATTATTTCTTCGGCTTTGCTAAAAA 57.432 29.630 0.00 0.00 0.00 1.94
344 372 6.951256 ATTTCTTCGGCTTTGCTAAAAATC 57.049 33.333 0.00 0.00 0.00 2.17
345 373 5.446143 TTCTTCGGCTTTGCTAAAAATCA 57.554 34.783 0.00 0.00 0.00 2.57
346 374 5.046910 TCTTCGGCTTTGCTAAAAATCAG 57.953 39.130 0.00 0.00 0.00 2.90
347 375 4.518970 TCTTCGGCTTTGCTAAAAATCAGT 59.481 37.500 0.00 0.00 0.00 3.41
348 376 4.419522 TCGGCTTTGCTAAAAATCAGTC 57.580 40.909 0.00 0.00 0.00 3.51
349 377 3.120338 TCGGCTTTGCTAAAAATCAGTCG 60.120 43.478 0.00 0.00 0.00 4.18
350 378 3.120338 CGGCTTTGCTAAAAATCAGTCGA 60.120 43.478 0.00 0.00 0.00 4.20
351 379 4.159120 GGCTTTGCTAAAAATCAGTCGAC 58.841 43.478 7.70 7.70 0.00 4.20
352 380 4.083271 GGCTTTGCTAAAAATCAGTCGACT 60.083 41.667 13.58 13.58 0.00 4.18
353 381 4.848299 GCTTTGCTAAAAATCAGTCGACTG 59.152 41.667 34.76 34.76 45.08 3.51
363 391 4.044024 GTCGACTGAGACTTCGCG 57.956 61.111 8.70 0.00 38.09 5.87
364 392 1.496393 GTCGACTGAGACTTCGCGA 59.504 57.895 3.71 3.71 38.09 5.87
365 393 0.110328 GTCGACTGAGACTTCGCGAA 60.110 55.000 22.01 22.01 38.09 4.70
366 394 0.166161 TCGACTGAGACTTCGCGAAG 59.834 55.000 39.55 39.55 43.79 3.79
375 403 2.631303 CTTCGCGAAGTCTCAGTCG 58.369 57.895 34.97 12.16 40.24 4.18
376 404 0.166161 CTTCGCGAAGTCTCAGTCGA 59.834 55.000 34.97 4.60 39.64 4.20
377 405 0.803117 TTCGCGAAGTCTCAGTCGAT 59.197 50.000 19.38 0.00 39.64 3.59
378 406 1.648504 TCGCGAAGTCTCAGTCGATA 58.351 50.000 6.20 0.00 39.64 2.92
379 407 1.326852 TCGCGAAGTCTCAGTCGATAC 59.673 52.381 6.20 0.00 39.64 2.24
380 408 1.328069 CGCGAAGTCTCAGTCGATACT 59.672 52.381 0.00 0.00 39.64 2.12
381 409 2.538861 CGCGAAGTCTCAGTCGATACTA 59.461 50.000 0.00 0.00 39.64 1.82
382 410 3.602038 CGCGAAGTCTCAGTCGATACTAC 60.602 52.174 0.00 0.00 39.64 2.73
383 411 3.309138 GCGAAGTCTCAGTCGATACTACA 59.691 47.826 0.00 0.00 39.64 2.74
384 412 4.201792 GCGAAGTCTCAGTCGATACTACAA 60.202 45.833 0.00 0.00 39.64 2.41
385 413 5.504337 GCGAAGTCTCAGTCGATACTACAAT 60.504 44.000 0.00 0.00 39.64 2.71
386 414 6.130723 CGAAGTCTCAGTCGATACTACAATC 58.869 44.000 0.00 0.00 39.64 2.67
387 415 6.018588 CGAAGTCTCAGTCGATACTACAATCT 60.019 42.308 0.00 0.00 39.64 2.40
388 416 6.612247 AGTCTCAGTCGATACTACAATCTG 57.388 41.667 0.00 0.00 33.48 2.90
389 417 6.116806 AGTCTCAGTCGATACTACAATCTGT 58.883 40.000 0.00 0.00 33.48 3.41
390 418 6.600032 AGTCTCAGTCGATACTACAATCTGTT 59.400 38.462 0.00 0.00 33.48 3.16
391 419 6.689241 GTCTCAGTCGATACTACAATCTGTTG 59.311 42.308 0.00 0.00 36.13 3.33
392 420 6.598064 TCTCAGTCGATACTACAATCTGTTGA 59.402 38.462 0.00 0.00 34.62 3.18
393 421 7.283354 TCTCAGTCGATACTACAATCTGTTGAT 59.717 37.037 0.00 0.00 34.62 2.57
394 422 7.418408 TCAGTCGATACTACAATCTGTTGATC 58.582 38.462 0.00 0.00 34.62 2.92
395 423 7.283354 TCAGTCGATACTACAATCTGTTGATCT 59.717 37.037 0.00 0.00 34.62 2.75
396 424 7.918033 CAGTCGATACTACAATCTGTTGATCTT 59.082 37.037 0.00 0.00 34.62 2.40
397 425 7.918033 AGTCGATACTACAATCTGTTGATCTTG 59.082 37.037 0.00 0.00 38.71 3.02
398 426 6.697455 TCGATACTACAATCTGTTGATCTTGC 59.303 38.462 0.00 0.00 38.71 4.01
399 427 6.476706 CGATACTACAATCTGTTGATCTTGCA 59.523 38.462 0.00 0.00 38.71 4.08
400 428 7.170489 CGATACTACAATCTGTTGATCTTGCAT 59.830 37.037 0.00 0.00 38.71 3.96
401 429 8.743085 ATACTACAATCTGTTGATCTTGCATT 57.257 30.769 0.00 0.00 38.71 3.56
402 430 6.849502 ACTACAATCTGTTGATCTTGCATTG 58.150 36.000 0.00 0.00 38.71 2.82
403 431 5.970317 ACAATCTGTTGATCTTGCATTGA 57.030 34.783 10.16 0.00 38.71 2.57
404 432 5.950883 ACAATCTGTTGATCTTGCATTGAG 58.049 37.500 10.16 0.00 38.71 3.02
405 433 5.708697 ACAATCTGTTGATCTTGCATTGAGA 59.291 36.000 10.16 0.00 38.71 3.27
406 434 6.377429 ACAATCTGTTGATCTTGCATTGAGAT 59.623 34.615 0.00 0.00 38.71 2.75
407 435 7.093902 ACAATCTGTTGATCTTGCATTGAGATT 60.094 33.333 1.03 0.00 38.71 2.40
408 436 6.829229 TCTGTTGATCTTGCATTGAGATTT 57.171 33.333 1.03 0.00 34.13 2.17
409 437 6.617879 TCTGTTGATCTTGCATTGAGATTTG 58.382 36.000 1.03 0.00 34.13 2.32
410 438 6.208007 TCTGTTGATCTTGCATTGAGATTTGT 59.792 34.615 1.03 0.00 34.13 2.83
411 439 6.153756 TGTTGATCTTGCATTGAGATTTGTG 58.846 36.000 1.03 0.00 34.13 3.33
412 440 4.740268 TGATCTTGCATTGAGATTTGTGC 58.260 39.130 1.03 0.00 34.13 4.57
413 441 4.218852 TGATCTTGCATTGAGATTTGTGCA 59.781 37.500 1.03 0.00 44.97 4.57
417 445 4.056092 TGCATTGAGATTTGTGCAAACA 57.944 36.364 0.00 0.00 43.83 2.83
418 446 4.439968 TGCATTGAGATTTGTGCAAACAA 58.560 34.783 0.00 1.37 43.83 2.83
419 447 5.057819 TGCATTGAGATTTGTGCAAACAAT 58.942 33.333 0.00 3.49 43.83 2.71
420 448 5.177881 TGCATTGAGATTTGTGCAAACAATC 59.822 36.000 0.00 0.00 43.83 2.67
421 449 5.407387 GCATTGAGATTTGTGCAAACAATCT 59.593 36.000 13.52 13.52 37.52 2.40
422 450 6.073440 GCATTGAGATTTGTGCAAACAATCTT 60.073 34.615 14.41 1.19 37.52 2.40
423 451 7.519328 GCATTGAGATTTGTGCAAACAATCTTT 60.519 33.333 14.41 4.46 37.52 2.52
424 452 7.846644 TTGAGATTTGTGCAAACAATCTTTT 57.153 28.000 14.41 0.00 32.51 2.27
425 453 7.846644 TGAGATTTGTGCAAACAATCTTTTT 57.153 28.000 14.41 0.00 32.51 1.94
448 476 8.600449 TTTTTCAGTTTTCTTTTCTTCTTGCA 57.400 26.923 0.00 0.00 0.00 4.08
449 477 8.776376 TTTTCAGTTTTCTTTTCTTCTTGCAT 57.224 26.923 0.00 0.00 0.00 3.96
450 478 9.868277 TTTTCAGTTTTCTTTTCTTCTTGCATA 57.132 25.926 0.00 0.00 0.00 3.14
451 479 8.856490 TTCAGTTTTCTTTTCTTCTTGCATAC 57.144 30.769 0.00 0.00 0.00 2.39
452 480 8.225603 TCAGTTTTCTTTTCTTCTTGCATACT 57.774 30.769 0.00 0.00 0.00 2.12
453 481 9.337396 TCAGTTTTCTTTTCTTCTTGCATACTA 57.663 29.630 0.00 0.00 0.00 1.82
454 482 9.387123 CAGTTTTCTTTTCTTCTTGCATACTAC 57.613 33.333 0.00 0.00 0.00 2.73
455 483 9.120538 AGTTTTCTTTTCTTCTTGCATACTACA 57.879 29.630 0.00 0.00 0.00 2.74
456 484 9.899226 GTTTTCTTTTCTTCTTGCATACTACAT 57.101 29.630 0.00 0.00 0.00 2.29
458 486 9.897744 TTTCTTTTCTTCTTGCATACTACATTG 57.102 29.630 0.00 0.00 0.00 2.82
459 487 7.530010 TCTTTTCTTCTTGCATACTACATTGC 58.470 34.615 0.00 0.00 39.33 3.56
460 488 7.391554 TCTTTTCTTCTTGCATACTACATTGCT 59.608 33.333 0.00 0.00 39.60 3.91
461 489 7.452880 TTTCTTCTTGCATACTACATTGCTT 57.547 32.000 0.00 0.00 39.60 3.91
462 490 6.426980 TCTTCTTGCATACTACATTGCTTG 57.573 37.500 0.00 0.00 39.60 4.01
463 491 6.172630 TCTTCTTGCATACTACATTGCTTGA 58.827 36.000 0.00 0.00 39.60 3.02
464 492 5.801350 TCTTGCATACTACATTGCTTGAC 57.199 39.130 0.00 0.00 39.60 3.18
465 493 5.491070 TCTTGCATACTACATTGCTTGACT 58.509 37.500 0.00 0.00 39.60 3.41
466 494 5.352293 TCTTGCATACTACATTGCTTGACTG 59.648 40.000 0.00 0.00 39.60 3.51
467 495 4.831107 TGCATACTACATTGCTTGACTGA 58.169 39.130 0.00 0.00 39.60 3.41
468 496 4.872124 TGCATACTACATTGCTTGACTGAG 59.128 41.667 0.00 0.00 39.60 3.35
469 497 5.111989 GCATACTACATTGCTTGACTGAGA 58.888 41.667 0.00 0.00 35.95 3.27
470 498 5.006165 GCATACTACATTGCTTGACTGAGAC 59.994 44.000 0.00 0.00 35.95 3.36
471 499 4.881019 ACTACATTGCTTGACTGAGACT 57.119 40.909 0.00 0.00 0.00 3.24
472 500 5.220710 ACTACATTGCTTGACTGAGACTT 57.779 39.130 0.00 0.00 0.00 3.01
473 501 5.233988 ACTACATTGCTTGACTGAGACTTC 58.766 41.667 0.00 0.00 0.00 3.01
474 502 3.062763 ACATTGCTTGACTGAGACTTCG 58.937 45.455 0.00 0.00 0.00 3.79
475 503 1.502231 TTGCTTGACTGAGACTTCGC 58.498 50.000 0.00 0.00 0.00 4.70
476 504 0.664466 TGCTTGACTGAGACTTCGCG 60.664 55.000 0.00 0.00 0.00 5.87
477 505 0.387367 GCTTGACTGAGACTTCGCGA 60.387 55.000 3.71 3.71 0.00 5.87
478 506 1.930817 GCTTGACTGAGACTTCGCGAA 60.931 52.381 22.01 22.01 0.00 4.70
479 507 1.982223 CTTGACTGAGACTTCGCGAAG 59.018 52.381 39.55 39.55 43.79 3.79
488 516 2.631303 CTTCGCGAAGTCTCAGTCG 58.369 57.895 34.97 12.16 40.24 4.18
489 517 0.166161 CTTCGCGAAGTCTCAGTCGA 59.834 55.000 34.97 4.60 39.64 4.20
490 518 0.110328 TTCGCGAAGTCTCAGTCGAC 60.110 55.000 19.38 7.70 39.64 4.20
491 519 0.949588 TCGCGAAGTCTCAGTCGACT 60.950 55.000 13.58 13.58 45.73 4.18
492 520 0.791238 CGCGAAGTCTCAGTCGACTG 60.791 60.000 34.76 34.76 43.14 3.51
503 531 2.701107 CAGTCGACTGAGACCTAGACA 58.299 52.381 36.73 0.00 46.59 3.41
504 532 3.075148 CAGTCGACTGAGACCTAGACAA 58.925 50.000 36.73 0.00 46.59 3.18
505 533 3.502595 CAGTCGACTGAGACCTAGACAAA 59.497 47.826 36.73 0.00 46.59 2.83
506 534 3.502979 AGTCGACTGAGACCTAGACAAAC 59.497 47.826 19.30 0.00 41.83 2.93
507 535 2.818432 TCGACTGAGACCTAGACAAACC 59.182 50.000 0.00 0.00 0.00 3.27
508 536 2.094649 CGACTGAGACCTAGACAAACCC 60.095 54.545 0.00 0.00 0.00 4.11
509 537 3.166679 GACTGAGACCTAGACAAACCCT 58.833 50.000 0.00 0.00 0.00 4.34
510 538 3.579151 GACTGAGACCTAGACAAACCCTT 59.421 47.826 0.00 0.00 0.00 3.95
511 539 3.974642 ACTGAGACCTAGACAAACCCTTT 59.025 43.478 0.00 0.00 0.00 3.11
512 540 4.412528 ACTGAGACCTAGACAAACCCTTTT 59.587 41.667 0.00 0.00 0.00 2.27
513 541 5.605488 ACTGAGACCTAGACAAACCCTTTTA 59.395 40.000 0.00 0.00 0.00 1.52
514 542 6.272558 ACTGAGACCTAGACAAACCCTTTTAT 59.727 38.462 0.00 0.00 0.00 1.40
515 543 7.086685 TGAGACCTAGACAAACCCTTTTATT 57.913 36.000 0.00 0.00 0.00 1.40
516 544 7.523415 TGAGACCTAGACAAACCCTTTTATTT 58.477 34.615 0.00 0.00 0.00 1.40
517 545 7.664318 TGAGACCTAGACAAACCCTTTTATTTC 59.336 37.037 0.00 0.00 0.00 2.17
518 546 7.756614 AGACCTAGACAAACCCTTTTATTTCT 58.243 34.615 0.00 0.00 0.00 2.52
568 596 4.584638 ACTGCCAAATACCATCACCTTA 57.415 40.909 0.00 0.00 0.00 2.69
670 706 2.356638 CCCCCACCAAATAAAAATGGCC 60.357 50.000 0.00 0.00 40.51 5.36
672 708 3.245052 CCCCACCAAATAAAAATGGCCAA 60.245 43.478 10.96 0.00 40.51 4.52
673 709 3.755905 CCCACCAAATAAAAATGGCCAAC 59.244 43.478 10.96 0.00 40.51 3.77
714 750 2.283529 AAGTGCCATCGTCGTCCCT 61.284 57.895 0.00 0.00 0.00 4.20
715 751 0.968901 AAGTGCCATCGTCGTCCCTA 60.969 55.000 0.00 0.00 0.00 3.53
716 752 1.065928 GTGCCATCGTCGTCCCTAG 59.934 63.158 0.00 0.00 0.00 3.02
717 753 2.027751 GCCATCGTCGTCCCTAGC 59.972 66.667 0.00 0.00 0.00 3.42
848 884 5.007034 CCGCCCATGAACCATACATAATTA 58.993 41.667 0.00 0.00 0.00 1.40
850 886 5.705441 CGCCCATGAACCATACATAATTAGT 59.295 40.000 0.00 0.00 0.00 2.24
851 887 6.876789 CGCCCATGAACCATACATAATTAGTA 59.123 38.462 0.00 0.00 0.00 1.82
852 888 7.148474 CGCCCATGAACCATACATAATTAGTAC 60.148 40.741 0.00 0.00 0.00 2.73
876 912 2.890945 AGTTAGTTGCCCACAAACCATC 59.109 45.455 0.00 0.00 37.58 3.51
926 962 1.153745 CACAGCTCACTCCGGCTAC 60.154 63.158 0.00 0.00 37.00 3.58
954 990 1.941325 CTTAGGTGCTCGGTCCATTC 58.059 55.000 0.00 0.00 0.00 2.67
963 999 3.134127 GGTCCATTCCAGCGCCAC 61.134 66.667 2.29 0.00 0.00 5.01
968 1008 1.152984 CATTCCAGCGCCACCCATA 60.153 57.895 2.29 0.00 0.00 2.74
1002 1042 0.529337 CACTACTGAGCTCGGCCATG 60.529 60.000 22.80 13.51 0.00 3.66
1003 1043 1.068753 CTACTGAGCTCGGCCATGG 59.931 63.158 22.80 7.63 0.00 3.66
1004 1044 2.985512 CTACTGAGCTCGGCCATGGC 62.986 65.000 29.47 29.47 41.06 4.40
1119 1162 1.060937 GATCGCGCACAACATCACC 59.939 57.895 8.75 0.00 0.00 4.02
1203 1246 3.607987 GACGAGATCAACGCGCGG 61.608 66.667 35.22 17.77 45.03 6.46
1504 1547 2.967397 CCTACGACGCCACCTTCA 59.033 61.111 0.00 0.00 0.00 3.02
1551 1594 4.680237 TTCGCGGTGCTGGAGGTG 62.680 66.667 6.13 0.00 0.00 4.00
1689 1732 3.400054 AAGGACTACCAGGCGGCC 61.400 66.667 12.11 12.11 38.94 6.13
2034 2077 4.899239 GACCGCCTCCTGATGCCG 62.899 72.222 0.00 0.00 0.00 5.69
2271 2329 1.025113 TCGCGTCCCTACTGTGAGAG 61.025 60.000 5.77 0.00 0.00 3.20
2273 2331 1.747709 GCGTCCCTACTGTGAGAGTA 58.252 55.000 0.00 0.00 35.96 2.59
2274 2332 2.089980 GCGTCCCTACTGTGAGAGTAA 58.910 52.381 0.00 0.00 36.69 2.24
2276 2334 3.607741 CGTCCCTACTGTGAGAGTAAGA 58.392 50.000 0.00 0.00 36.69 2.10
2302 2360 2.794820 AAAGCAGAGAGAGCGGTGGC 62.795 60.000 0.00 0.00 40.37 5.01
2303 2361 4.074526 GCAGAGAGAGCGGTGGCA 62.075 66.667 0.00 0.00 43.41 4.92
2349 2407 2.941720 GTCAGCCCATCACATTCTTCTC 59.058 50.000 0.00 0.00 0.00 2.87
2388 2459 4.201980 CCATTGATCGTTGATTGCATGAGT 60.202 41.667 0.00 0.00 0.00 3.41
2395 2466 0.392060 TGATTGCATGAGTCGCAGCT 60.392 50.000 0.00 0.00 41.18 4.24
2399 2470 1.575244 TGCATGAGTCGCAGCTATTC 58.425 50.000 0.00 0.00 33.55 1.75
2421 2494 8.853077 ATTCTCTCTGTGTAATTCATGAAACA 57.147 30.769 13.09 10.51 0.00 2.83
2422 2495 8.853077 TTCTCTCTGTGTAATTCATGAAACAT 57.147 30.769 13.09 4.69 0.00 2.71
2431 2504 9.624697 GTGTAATTCATGAAACATTGTGTACAT 57.375 29.630 13.09 0.00 31.36 2.29
2466 2540 2.937799 TCTTTTTACGTGCTGGTTTCGT 59.062 40.909 0.00 0.00 40.78 3.85
2468 2542 0.854062 TTTACGTGCTGGTTTCGTCG 59.146 50.000 0.00 0.00 38.69 5.12
2489 2564 2.225727 GGAAGAACAAAGCCGTTACAGG 59.774 50.000 0.00 0.00 0.00 4.00
2524 2599 3.070576 GCCCTTGCCATTTCCGCT 61.071 61.111 0.00 0.00 0.00 5.52
2537 2612 4.662961 CCGCTCACCACTCACGCA 62.663 66.667 0.00 0.00 0.00 5.24
2538 2613 3.108289 CGCTCACCACTCACGCAG 61.108 66.667 0.00 0.00 0.00 5.18
2539 2614 2.340078 GCTCACCACTCACGCAGA 59.660 61.111 0.00 0.00 0.00 4.26
2540 2615 2.024319 GCTCACCACTCACGCAGAC 61.024 63.158 0.00 0.00 0.00 3.51
2541 2616 1.363807 CTCACCACTCACGCAGACA 59.636 57.895 0.00 0.00 0.00 3.41
2542 2617 0.941463 CTCACCACTCACGCAGACAC 60.941 60.000 0.00 0.00 0.00 3.67
2544 2619 3.406361 CCACTCACGCAGACACGC 61.406 66.667 0.00 0.00 36.19 5.34
2545 2620 2.355126 CACTCACGCAGACACGCT 60.355 61.111 0.00 0.00 36.19 5.07
2546 2621 2.049985 ACTCACGCAGACACGCTC 60.050 61.111 0.00 0.00 36.19 5.03
2547 2622 2.807045 CTCACGCAGACACGCTCC 60.807 66.667 0.00 0.00 36.19 4.70
2771 2860 3.174265 GGGGAGATGAGGCCCAGG 61.174 72.222 0.00 0.00 46.57 4.45
2881 3005 2.119484 AATTTCACCGGGCCAGACGA 62.119 55.000 6.32 0.00 0.00 4.20
2885 3009 4.988716 ACCGGGCCAGACGACTCA 62.989 66.667 6.32 0.00 0.00 3.41
3001 3134 4.152223 TGCACGGATAAATAATCATCAGCG 59.848 41.667 0.00 0.00 36.20 5.18
3004 3137 3.063997 CGGATAAATAATCATCAGCGGGC 59.936 47.826 0.00 0.00 36.20 6.13
3006 3139 4.095483 GGATAAATAATCATCAGCGGGCAG 59.905 45.833 0.00 0.00 36.20 4.85
3007 3140 2.645838 AATAATCATCAGCGGGCAGT 57.354 45.000 0.00 0.00 0.00 4.40
3008 3141 3.769739 AATAATCATCAGCGGGCAGTA 57.230 42.857 0.00 0.00 0.00 2.74
3009 3142 3.769739 ATAATCATCAGCGGGCAGTAA 57.230 42.857 0.00 0.00 0.00 2.24
3011 3144 2.645838 ATCATCAGCGGGCAGTAAAT 57.354 45.000 0.00 0.00 0.00 1.40
3013 3146 3.552132 TCATCAGCGGGCAGTAAATAA 57.448 42.857 0.00 0.00 0.00 1.40
3014 3147 3.466836 TCATCAGCGGGCAGTAAATAAG 58.533 45.455 0.00 0.00 0.00 1.73
3016 3149 2.901249 TCAGCGGGCAGTAAATAAGAC 58.099 47.619 0.00 0.00 0.00 3.01
3017 3150 1.940613 CAGCGGGCAGTAAATAAGACC 59.059 52.381 0.00 0.00 0.00 3.85
3018 3151 0.935196 GCGGGCAGTAAATAAGACCG 59.065 55.000 0.79 0.79 42.47 4.79
3034 3167 0.396811 ACCGTGCTGGAGCTACTTTT 59.603 50.000 0.00 0.00 42.00 2.27
3037 3170 2.866762 CCGTGCTGGAGCTACTTTTATC 59.133 50.000 0.00 0.00 42.00 1.75
3041 3174 4.331168 GTGCTGGAGCTACTTTTATCACAG 59.669 45.833 0.00 0.00 42.66 3.66
3045 3178 2.866762 GAGCTACTTTTATCACAGCCGG 59.133 50.000 0.00 0.00 32.58 6.13
3046 3179 2.500098 AGCTACTTTTATCACAGCCGGA 59.500 45.455 5.05 0.00 32.58 5.14
3053 3186 6.852664 ACTTTTATCACAGCCGGAAAATTAG 58.147 36.000 5.05 0.00 0.00 1.73
3059 3192 3.965780 GCCGGAAAATTAGGGCATG 57.034 52.632 5.05 0.00 44.91 4.06
3061 3194 1.110442 CCGGAAAATTAGGGCATGCA 58.890 50.000 21.36 0.00 0.00 3.96
3062 3195 1.202405 CCGGAAAATTAGGGCATGCAC 60.202 52.381 21.36 17.78 0.00 4.57
3063 3196 1.750778 CGGAAAATTAGGGCATGCACT 59.249 47.619 28.35 28.35 0.00 4.40
3065 3198 3.026694 GGAAAATTAGGGCATGCACTCT 58.973 45.455 29.28 18.32 0.00 3.24
3066 3199 3.448660 GGAAAATTAGGGCATGCACTCTT 59.551 43.478 29.28 18.53 0.00 2.85
3067 3200 4.427312 GAAAATTAGGGCATGCACTCTTG 58.573 43.478 29.28 0.00 0.00 3.02
3068 3201 2.814805 ATTAGGGCATGCACTCTTGT 57.185 45.000 29.28 8.17 0.00 3.16
3069 3202 1.825090 TTAGGGCATGCACTCTTGTG 58.175 50.000 29.28 0.00 46.37 3.33
3070 3203 0.983467 TAGGGCATGCACTCTTGTGA 59.017 50.000 29.28 4.31 46.55 3.58
3071 3204 0.111061 AGGGCATGCACTCTTGTGAA 59.889 50.000 19.14 0.00 46.55 3.18
3073 3206 0.109412 GGCATGCACTCTTGTGAAGC 60.109 55.000 21.36 0.00 46.55 3.86
3074 3207 0.453950 GCATGCACTCTTGTGAAGCG 60.454 55.000 14.21 0.00 46.55 4.68
3078 3211 0.880278 GCACTCTTGTGAAGCGGTGA 60.880 55.000 0.00 0.00 46.55 4.02
3079 3212 1.581934 CACTCTTGTGAAGCGGTGAA 58.418 50.000 0.00 0.00 46.55 3.18
3107 3242 2.730094 GTTGCACAACTGCTGGGG 59.270 61.111 6.27 0.00 44.57 4.96
3120 3255 3.102204 CTGCTGGGGGAAAGAAATGATT 58.898 45.455 0.00 0.00 0.00 2.57
3142 3277 2.044555 GTAGCACGGGGGAAAAGGC 61.045 63.158 0.00 0.00 0.00 4.35
3148 3283 2.914908 CGGGGGAAAAGGCAACACG 61.915 63.158 0.00 0.00 41.41 4.49
3149 3284 2.338620 GGGGAAAAGGCAACACGC 59.661 61.111 0.00 0.00 41.41 5.34
3150 3285 2.494530 GGGGAAAAGGCAACACGCA 61.495 57.895 0.00 0.00 45.17 5.24
3151 3286 1.665442 GGGAAAAGGCAACACGCAT 59.335 52.632 0.00 0.00 45.17 4.73
3152 3287 0.667184 GGGAAAAGGCAACACGCATG 60.667 55.000 0.00 0.00 45.17 4.06
3153 3288 0.031994 GGAAAAGGCAACACGCATGT 59.968 50.000 0.00 0.00 45.17 3.21
3154 3289 1.268352 GGAAAAGGCAACACGCATGTA 59.732 47.619 0.00 0.00 45.17 2.29
3156 3291 0.596082 AAAGGCAACACGCATGTACC 59.404 50.000 0.00 0.00 45.17 3.34
3157 3292 1.241315 AAGGCAACACGCATGTACCC 61.241 55.000 1.60 0.00 45.17 3.69
3158 3293 2.478746 GCAACACGCATGTACCCG 59.521 61.111 0.00 0.00 38.45 5.28
3205 3345 2.304180 ACTCAAGGACAGATGTTCCCAG 59.696 50.000 0.00 0.00 0.00 4.45
3209 3349 0.107459 GGACAGATGTTCCCAGCTCC 60.107 60.000 0.00 0.00 34.40 4.70
3210 3350 0.908198 GACAGATGTTCCCAGCTCCT 59.092 55.000 0.00 0.00 34.40 3.69
3211 3351 0.617413 ACAGATGTTCCCAGCTCCTG 59.383 55.000 0.00 0.00 34.40 3.86
3219 3359 4.421515 CCAGCTCCTGGCCAGTGG 62.422 72.222 30.63 25.94 45.13 4.00
3229 3369 4.016838 GCCAGTGGCCATTGCTAA 57.983 55.556 24.53 0.00 44.06 3.09
3230 3370 2.275880 GCCAGTGGCCATTGCTAAA 58.724 52.632 24.53 0.00 44.06 1.85
3231 3371 0.174162 GCCAGTGGCCATTGCTAAAG 59.826 55.000 24.53 9.65 44.06 1.85
3232 3372 1.549203 CCAGTGGCCATTGCTAAAGT 58.451 50.000 22.26 0.00 37.74 2.66
3233 3373 1.203052 CCAGTGGCCATTGCTAAAGTG 59.797 52.381 22.26 3.46 37.74 3.16
3234 3374 0.890683 AGTGGCCATTGCTAAAGTGC 59.109 50.000 9.72 0.00 37.74 4.40
3235 3375 0.890683 GTGGCCATTGCTAAAGTGCT 59.109 50.000 9.72 0.00 37.74 4.40
3236 3376 0.889994 TGGCCATTGCTAAAGTGCTG 59.110 50.000 0.00 0.00 37.74 4.41
3237 3377 0.890683 GGCCATTGCTAAAGTGCTGT 59.109 50.000 0.00 0.00 37.74 4.40
3238 3378 2.091541 GGCCATTGCTAAAGTGCTGTA 58.908 47.619 0.00 0.00 37.74 2.74
3239 3379 2.098117 GGCCATTGCTAAAGTGCTGTAG 59.902 50.000 0.00 0.00 37.74 2.74
3240 3380 2.749621 GCCATTGCTAAAGTGCTGTAGT 59.250 45.455 0.00 0.00 33.53 2.73
3241 3381 3.938963 GCCATTGCTAAAGTGCTGTAGTA 59.061 43.478 0.00 0.00 33.53 1.82
3242 3382 4.576463 GCCATTGCTAAAGTGCTGTAGTAT 59.424 41.667 0.00 0.00 33.53 2.12
3243 3383 5.066505 GCCATTGCTAAAGTGCTGTAGTATT 59.933 40.000 0.00 0.00 33.53 1.89
3244 3384 6.404734 GCCATTGCTAAAGTGCTGTAGTATTT 60.405 38.462 0.00 0.00 33.53 1.40
3245 3385 7.201696 GCCATTGCTAAAGTGCTGTAGTATTTA 60.202 37.037 0.00 0.00 33.53 1.40
3246 3386 8.122952 CCATTGCTAAAGTGCTGTAGTATTTAC 58.877 37.037 0.00 0.00 0.00 2.01
3247 3387 8.664798 CATTGCTAAAGTGCTGTAGTATTTACA 58.335 33.333 0.00 0.00 0.00 2.41
3248 3388 7.591006 TGCTAAAGTGCTGTAGTATTTACAC 57.409 36.000 0.00 0.00 0.00 2.90
3249 3389 7.156000 TGCTAAAGTGCTGTAGTATTTACACA 58.844 34.615 0.00 0.00 0.00 3.72
3250 3390 7.658167 TGCTAAAGTGCTGTAGTATTTACACAA 59.342 33.333 0.00 0.00 0.00 3.33
3251 3391 8.169268 GCTAAAGTGCTGTAGTATTTACACAAG 58.831 37.037 0.00 0.00 0.00 3.16
3252 3392 9.419297 CTAAAGTGCTGTAGTATTTACACAAGA 57.581 33.333 0.00 0.00 0.00 3.02
3253 3393 8.671384 AAAGTGCTGTAGTATTTACACAAGAA 57.329 30.769 0.00 0.00 0.00 2.52
3254 3394 8.671384 AAGTGCTGTAGTATTTACACAAGAAA 57.329 30.769 0.00 0.00 0.00 2.52
3255 3395 8.848474 AGTGCTGTAGTATTTACACAAGAAAT 57.152 30.769 0.00 0.00 0.00 2.17
3256 3396 8.936864 AGTGCTGTAGTATTTACACAAGAAATC 58.063 33.333 0.00 0.00 0.00 2.17
3257 3397 8.717821 GTGCTGTAGTATTTACACAAGAAATCA 58.282 33.333 0.00 0.00 0.00 2.57
3258 3398 8.717821 TGCTGTAGTATTTACACAAGAAATCAC 58.282 33.333 0.00 0.00 0.00 3.06
3259 3399 8.936864 GCTGTAGTATTTACACAAGAAATCACT 58.063 33.333 0.00 0.00 0.00 3.41
3268 3408 8.918202 TTACACAAGAAATCACTACAATTCCT 57.082 30.769 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.457436 TCTAGGTTTTGTTCTAAGTCAAAGTTT 57.543 29.630 0.00 0.00 35.47 2.66
35 36 9.628500 ATCTAGGTTTTGTTCTAAGTCAAAGTT 57.372 29.630 0.00 0.00 35.47 2.66
36 37 9.057089 CATCTAGGTTTTGTTCTAAGTCAAAGT 57.943 33.333 0.00 0.00 35.47 2.66
37 38 9.057089 ACATCTAGGTTTTGTTCTAAGTCAAAG 57.943 33.333 0.00 0.00 35.47 2.77
38 39 8.974060 ACATCTAGGTTTTGTTCTAAGTCAAA 57.026 30.769 0.00 0.00 32.75 2.69
39 40 9.485206 GTACATCTAGGTTTTGTTCTAAGTCAA 57.515 33.333 0.00 0.00 0.00 3.18
40 41 8.644216 TGTACATCTAGGTTTTGTTCTAAGTCA 58.356 33.333 0.00 0.00 0.00 3.41
41 42 9.654663 ATGTACATCTAGGTTTTGTTCTAAGTC 57.345 33.333 1.41 0.00 0.00 3.01
49 50 8.395633 GCGAATAAATGTACATCTAGGTTTTGT 58.604 33.333 9.23 0.00 0.00 2.83
50 51 7.582679 CGCGAATAAATGTACATCTAGGTTTTG 59.417 37.037 9.23 0.00 0.00 2.44
51 52 7.254658 CCGCGAATAAATGTACATCTAGGTTTT 60.255 37.037 8.23 1.19 0.00 2.43
52 53 6.202188 CCGCGAATAAATGTACATCTAGGTTT 59.798 38.462 8.23 1.94 0.00 3.27
53 54 5.694910 CCGCGAATAAATGTACATCTAGGTT 59.305 40.000 8.23 1.82 0.00 3.50
54 55 5.010314 TCCGCGAATAAATGTACATCTAGGT 59.990 40.000 8.23 0.00 0.00 3.08
55 56 5.345202 GTCCGCGAATAAATGTACATCTAGG 59.655 44.000 8.23 3.66 0.00 3.02
56 57 5.059343 CGTCCGCGAATAAATGTACATCTAG 59.941 44.000 8.23 0.00 41.33 2.43
57 58 4.913345 CGTCCGCGAATAAATGTACATCTA 59.087 41.667 8.23 0.00 41.33 1.98
58 59 3.734231 CGTCCGCGAATAAATGTACATCT 59.266 43.478 8.23 0.00 41.33 2.90
59 60 3.121126 CCGTCCGCGAATAAATGTACATC 60.121 47.826 8.23 0.00 41.33 3.06
60 61 2.798283 CCGTCCGCGAATAAATGTACAT 59.202 45.455 8.23 1.41 41.33 2.29
61 62 2.159268 TCCGTCCGCGAATAAATGTACA 60.159 45.455 8.23 0.00 41.33 2.90
62 63 2.462889 TCCGTCCGCGAATAAATGTAC 58.537 47.619 8.23 0.00 41.33 2.90
63 64 2.544277 CCTCCGTCCGCGAATAAATGTA 60.544 50.000 8.23 0.00 41.33 2.29
64 65 1.567504 CTCCGTCCGCGAATAAATGT 58.432 50.000 8.23 0.00 41.33 2.71
65 66 0.859232 CCTCCGTCCGCGAATAAATG 59.141 55.000 8.23 0.00 41.33 2.32
66 67 0.249741 CCCTCCGTCCGCGAATAAAT 60.250 55.000 8.23 0.00 41.33 1.40
67 68 1.142314 CCCTCCGTCCGCGAATAAA 59.858 57.895 8.23 0.00 41.33 1.40
68 69 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
69 70 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
70 71 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
71 72 3.626996 TACTCCCTCCGTCCGCGAA 62.627 63.158 8.23 0.00 41.33 4.70
72 73 4.100084 TACTCCCTCCGTCCGCGA 62.100 66.667 8.23 0.00 41.33 5.87
73 74 3.885521 GTACTCCCTCCGTCCGCG 61.886 72.222 0.00 0.00 37.95 6.46
74 75 3.885521 CGTACTCCCTCCGTCCGC 61.886 72.222 0.00 0.00 0.00 5.54
75 76 2.437359 ACGTACTCCCTCCGTCCG 60.437 66.667 0.00 0.00 0.00 4.79
76 77 1.377725 TCACGTACTCCCTCCGTCC 60.378 63.158 0.00 0.00 31.46 4.79
77 78 0.957395 TGTCACGTACTCCCTCCGTC 60.957 60.000 0.00 0.00 31.46 4.79
78 79 0.538057 TTGTCACGTACTCCCTCCGT 60.538 55.000 0.00 0.00 34.71 4.69
79 80 0.599558 TTTGTCACGTACTCCCTCCG 59.400 55.000 0.00 0.00 0.00 4.63
80 81 1.891150 TCTTTGTCACGTACTCCCTCC 59.109 52.381 0.00 0.00 0.00 4.30
81 82 3.576648 CTTCTTTGTCACGTACTCCCTC 58.423 50.000 0.00 0.00 0.00 4.30
82 83 2.288886 GCTTCTTTGTCACGTACTCCCT 60.289 50.000 0.00 0.00 0.00 4.20
83 84 2.067013 GCTTCTTTGTCACGTACTCCC 58.933 52.381 0.00 0.00 0.00 4.30
84 85 2.731976 CTGCTTCTTTGTCACGTACTCC 59.268 50.000 0.00 0.00 0.00 3.85
85 86 3.425858 GTCTGCTTCTTTGTCACGTACTC 59.574 47.826 0.00 0.00 0.00 2.59
86 87 3.068307 AGTCTGCTTCTTTGTCACGTACT 59.932 43.478 0.00 0.00 0.00 2.73
87 88 3.381949 AGTCTGCTTCTTTGTCACGTAC 58.618 45.455 0.00 0.00 0.00 3.67
109 110 5.477510 TCACTTTATTTACGGTTTCGGCTA 58.522 37.500 0.00 0.00 41.39 3.93
222 241 2.026301 GGAATCCGAGGCGAGTCG 59.974 66.667 8.54 8.54 39.77 4.18
289 313 1.202268 CGTTAGGGTGGAGACATCGAC 60.202 57.143 0.00 0.00 44.71 4.20
314 342 8.951787 TTAGCAAAGCCGAAGAAATAATAGTA 57.048 30.769 0.00 0.00 0.00 1.82
328 356 3.120338 TCGACTGATTTTTAGCAAAGCCG 60.120 43.478 0.00 0.00 0.00 5.52
329 357 4.083271 AGTCGACTGATTTTTAGCAAAGCC 60.083 41.667 19.30 0.00 0.00 4.35
330 358 4.848299 CAGTCGACTGATTTTTAGCAAAGC 59.152 41.667 36.73 0.00 46.59 3.51
344 372 0.791238 CGCGAAGTCTCAGTCGACTG 60.791 60.000 34.76 34.76 43.14 3.51
345 373 0.949588 TCGCGAAGTCTCAGTCGACT 60.950 55.000 13.58 13.58 45.73 4.18
346 374 0.110328 TTCGCGAAGTCTCAGTCGAC 60.110 55.000 19.38 7.70 39.64 4.20
347 375 0.166161 CTTCGCGAAGTCTCAGTCGA 59.834 55.000 34.97 4.60 39.64 4.20
348 376 2.631303 CTTCGCGAAGTCTCAGTCG 58.369 57.895 34.97 12.16 40.24 4.18
357 385 0.166161 TCGACTGAGACTTCGCGAAG 59.834 55.000 39.55 39.55 43.79 3.79
358 386 0.803117 ATCGACTGAGACTTCGCGAA 59.197 50.000 22.01 22.01 35.15 4.70
359 387 1.326852 GTATCGACTGAGACTTCGCGA 59.673 52.381 3.71 3.71 33.52 5.87
360 388 1.328069 AGTATCGACTGAGACTTCGCG 59.672 52.381 0.00 0.00 43.97 5.87
361 389 3.309138 TGTAGTATCGACTGAGACTTCGC 59.691 47.826 0.00 0.00 43.97 4.70
362 390 5.466432 TTGTAGTATCGACTGAGACTTCG 57.534 43.478 0.00 0.00 43.97 3.79
363 391 7.129622 CAGATTGTAGTATCGACTGAGACTTC 58.870 42.308 0.00 0.00 43.97 3.01
364 392 6.600032 ACAGATTGTAGTATCGACTGAGACTT 59.400 38.462 0.00 0.00 43.97 3.01
366 394 6.366315 ACAGATTGTAGTATCGACTGAGAC 57.634 41.667 0.00 0.00 36.28 3.36
367 395 6.598064 TCAACAGATTGTAGTATCGACTGAGA 59.402 38.462 0.00 0.00 37.11 3.27
368 396 6.786207 TCAACAGATTGTAGTATCGACTGAG 58.214 40.000 0.00 0.00 37.11 3.35
369 397 6.753107 TCAACAGATTGTAGTATCGACTGA 57.247 37.500 0.00 0.00 37.11 3.41
370 398 7.421599 AGATCAACAGATTGTAGTATCGACTG 58.578 38.462 0.00 0.00 37.11 3.51
371 399 7.575414 AGATCAACAGATTGTAGTATCGACT 57.425 36.000 0.00 0.00 37.11 4.18
372 400 7.306283 GCAAGATCAACAGATTGTAGTATCGAC 60.306 40.741 0.00 0.00 37.11 4.20
373 401 6.697455 GCAAGATCAACAGATTGTAGTATCGA 59.303 38.462 0.00 0.00 37.11 3.59
374 402 6.476706 TGCAAGATCAACAGATTGTAGTATCG 59.523 38.462 0.00 0.00 37.11 2.92
375 403 7.776933 TGCAAGATCAACAGATTGTAGTATC 57.223 36.000 0.00 0.00 37.11 2.24
376 404 8.618677 CAATGCAAGATCAACAGATTGTAGTAT 58.381 33.333 0.00 0.00 37.11 2.12
377 405 7.823799 TCAATGCAAGATCAACAGATTGTAGTA 59.176 33.333 0.00 0.00 37.11 1.82
378 406 6.656270 TCAATGCAAGATCAACAGATTGTAGT 59.344 34.615 0.00 0.00 37.11 2.73
379 407 7.065443 TCTCAATGCAAGATCAACAGATTGTAG 59.935 37.037 0.00 0.00 37.11 2.74
380 408 6.880529 TCTCAATGCAAGATCAACAGATTGTA 59.119 34.615 0.00 0.00 37.11 2.41
381 409 5.708697 TCTCAATGCAAGATCAACAGATTGT 59.291 36.000 0.00 0.00 37.11 2.71
382 410 6.190954 TCTCAATGCAAGATCAACAGATTG 57.809 37.500 0.00 0.00 37.14 2.67
383 411 7.406031 AATCTCAATGCAAGATCAACAGATT 57.594 32.000 0.00 0.00 32.29 2.40
384 412 7.093902 ACAAATCTCAATGCAAGATCAACAGAT 60.094 33.333 0.00 0.00 32.29 2.90
385 413 6.208007 ACAAATCTCAATGCAAGATCAACAGA 59.792 34.615 0.00 0.00 32.29 3.41
386 414 6.308041 CACAAATCTCAATGCAAGATCAACAG 59.692 38.462 0.00 0.00 32.29 3.16
387 415 6.153756 CACAAATCTCAATGCAAGATCAACA 58.846 36.000 0.00 0.00 32.29 3.33
388 416 5.061808 GCACAAATCTCAATGCAAGATCAAC 59.938 40.000 0.00 0.00 38.00 3.18
389 417 5.165676 GCACAAATCTCAATGCAAGATCAA 58.834 37.500 0.00 0.00 38.00 2.57
390 418 4.218852 TGCACAAATCTCAATGCAAGATCA 59.781 37.500 0.00 0.00 44.72 2.92
391 419 4.740268 TGCACAAATCTCAATGCAAGATC 58.260 39.130 0.00 0.00 44.72 2.75
392 420 4.794278 TGCACAAATCTCAATGCAAGAT 57.206 36.364 0.00 0.00 44.72 2.40
396 424 4.056092 TGTTTGCACAAATCTCAATGCA 57.944 36.364 0.00 0.00 45.94 3.96
397 425 5.407387 AGATTGTTTGCACAAATCTCAATGC 59.593 36.000 12.46 0.00 46.17 3.56
398 426 7.416154 AAGATTGTTTGCACAAATCTCAATG 57.584 32.000 14.76 0.00 46.17 2.82
399 427 8.441312 AAAAGATTGTTTGCACAAATCTCAAT 57.559 26.923 14.76 9.08 46.17 2.57
400 428 7.846644 AAAAGATTGTTTGCACAAATCTCAA 57.153 28.000 14.76 0.23 46.17 3.02
401 429 7.846644 AAAAAGATTGTTTGCACAAATCTCA 57.153 28.000 14.76 0.00 46.17 3.27
423 451 8.600449 TGCAAGAAGAAAAGAAAACTGAAAAA 57.400 26.923 0.00 0.00 0.00 1.94
424 452 8.776376 ATGCAAGAAGAAAAGAAAACTGAAAA 57.224 26.923 0.00 0.00 0.00 2.29
425 453 9.301153 GTATGCAAGAAGAAAAGAAAACTGAAA 57.699 29.630 0.00 0.00 0.00 2.69
426 454 8.686334 AGTATGCAAGAAGAAAAGAAAACTGAA 58.314 29.630 0.00 0.00 0.00 3.02
427 455 8.225603 AGTATGCAAGAAGAAAAGAAAACTGA 57.774 30.769 0.00 0.00 0.00 3.41
428 456 9.387123 GTAGTATGCAAGAAGAAAAGAAAACTG 57.613 33.333 0.00 0.00 0.00 3.16
429 457 9.120538 TGTAGTATGCAAGAAGAAAAGAAAACT 57.879 29.630 0.00 0.00 0.00 2.66
430 458 9.899226 ATGTAGTATGCAAGAAGAAAAGAAAAC 57.101 29.630 0.00 0.00 31.62 2.43
432 460 9.897744 CAATGTAGTATGCAAGAAGAAAAGAAA 57.102 29.630 0.00 0.00 31.62 2.52
433 461 8.023128 GCAATGTAGTATGCAAGAAGAAAAGAA 58.977 33.333 0.00 0.00 42.12 2.52
434 462 7.391554 AGCAATGTAGTATGCAAGAAGAAAAGA 59.608 33.333 0.00 0.00 44.95 2.52
435 463 7.533426 AGCAATGTAGTATGCAAGAAGAAAAG 58.467 34.615 0.00 0.00 44.95 2.27
436 464 7.452880 AGCAATGTAGTATGCAAGAAGAAAA 57.547 32.000 0.00 0.00 44.95 2.29
437 465 7.174772 TCAAGCAATGTAGTATGCAAGAAGAAA 59.825 33.333 0.00 0.00 44.95 2.52
438 466 6.654582 TCAAGCAATGTAGTATGCAAGAAGAA 59.345 34.615 0.00 0.00 44.95 2.52
439 467 6.092670 GTCAAGCAATGTAGTATGCAAGAAGA 59.907 38.462 0.00 0.00 44.95 2.87
440 468 6.093219 AGTCAAGCAATGTAGTATGCAAGAAG 59.907 38.462 0.00 0.00 44.95 2.85
441 469 5.939883 AGTCAAGCAATGTAGTATGCAAGAA 59.060 36.000 0.00 0.00 44.95 2.52
442 470 5.352293 CAGTCAAGCAATGTAGTATGCAAGA 59.648 40.000 0.00 0.00 44.95 3.02
443 471 5.352293 TCAGTCAAGCAATGTAGTATGCAAG 59.648 40.000 0.00 0.00 44.95 4.01
444 472 5.244755 TCAGTCAAGCAATGTAGTATGCAA 58.755 37.500 0.00 0.00 44.95 4.08
445 473 4.831107 TCAGTCAAGCAATGTAGTATGCA 58.169 39.130 0.00 0.00 44.95 3.96
446 474 5.006165 GTCTCAGTCAAGCAATGTAGTATGC 59.994 44.000 0.00 0.00 42.87 3.14
447 475 6.336566 AGTCTCAGTCAAGCAATGTAGTATG 58.663 40.000 0.00 0.00 0.00 2.39
448 476 6.537453 AGTCTCAGTCAAGCAATGTAGTAT 57.463 37.500 0.00 0.00 0.00 2.12
449 477 5.984695 AGTCTCAGTCAAGCAATGTAGTA 57.015 39.130 0.00 0.00 0.00 1.82
450 478 4.881019 AGTCTCAGTCAAGCAATGTAGT 57.119 40.909 0.00 0.00 0.00 2.73
451 479 4.325741 CGAAGTCTCAGTCAAGCAATGTAG 59.674 45.833 0.00 0.00 0.00 2.74
452 480 4.237724 CGAAGTCTCAGTCAAGCAATGTA 58.762 43.478 0.00 0.00 0.00 2.29
453 481 3.062763 CGAAGTCTCAGTCAAGCAATGT 58.937 45.455 0.00 0.00 0.00 2.71
454 482 2.159734 GCGAAGTCTCAGTCAAGCAATG 60.160 50.000 0.00 0.00 0.00 2.82
455 483 2.072298 GCGAAGTCTCAGTCAAGCAAT 58.928 47.619 0.00 0.00 0.00 3.56
456 484 1.502231 GCGAAGTCTCAGTCAAGCAA 58.498 50.000 0.00 0.00 0.00 3.91
457 485 0.664466 CGCGAAGTCTCAGTCAAGCA 60.664 55.000 0.00 0.00 0.00 3.91
458 486 0.387367 TCGCGAAGTCTCAGTCAAGC 60.387 55.000 6.20 0.00 0.00 4.01
459 487 1.982223 CTTCGCGAAGTCTCAGTCAAG 59.018 52.381 34.97 10.93 33.87 3.02
460 488 2.051879 CTTCGCGAAGTCTCAGTCAA 57.948 50.000 34.97 4.60 33.87 3.18
461 489 3.775065 CTTCGCGAAGTCTCAGTCA 57.225 52.632 34.97 5.14 33.87 3.41
470 498 0.166161 TCGACTGAGACTTCGCGAAG 59.834 55.000 39.55 39.55 43.79 3.79
471 499 0.110328 GTCGACTGAGACTTCGCGAA 60.110 55.000 22.01 22.01 38.09 4.70
472 500 1.496393 GTCGACTGAGACTTCGCGA 59.504 57.895 3.71 3.71 38.09 5.87
473 501 4.044024 GTCGACTGAGACTTCGCG 57.956 61.111 8.70 0.00 38.09 5.87
483 511 2.701107 TGTCTAGGTCTCAGTCGACTG 58.299 52.381 34.76 34.76 45.08 3.51
484 512 3.420300 TTGTCTAGGTCTCAGTCGACT 57.580 47.619 13.58 13.58 34.38 4.18
485 513 3.366171 GGTTTGTCTAGGTCTCAGTCGAC 60.366 52.174 7.70 7.70 0.00 4.20
486 514 2.818432 GGTTTGTCTAGGTCTCAGTCGA 59.182 50.000 0.00 0.00 0.00 4.20
487 515 2.094649 GGGTTTGTCTAGGTCTCAGTCG 60.095 54.545 0.00 0.00 0.00 4.18
488 516 3.166679 AGGGTTTGTCTAGGTCTCAGTC 58.833 50.000 0.00 0.00 0.00 3.51
489 517 3.261818 AGGGTTTGTCTAGGTCTCAGT 57.738 47.619 0.00 0.00 0.00 3.41
490 518 4.625607 AAAGGGTTTGTCTAGGTCTCAG 57.374 45.455 0.00 0.00 0.00 3.35
491 519 6.697641 ATAAAAGGGTTTGTCTAGGTCTCA 57.302 37.500 0.00 0.00 0.00 3.27
492 520 7.883833 AGAAATAAAAGGGTTTGTCTAGGTCTC 59.116 37.037 0.00 0.00 0.00 3.36
493 521 7.756614 AGAAATAAAAGGGTTTGTCTAGGTCT 58.243 34.615 0.00 0.00 0.00 3.85
494 522 7.997773 AGAAATAAAAGGGTTTGTCTAGGTC 57.002 36.000 0.00 0.00 0.00 3.85
495 523 9.293404 GTAAGAAATAAAAGGGTTTGTCTAGGT 57.707 33.333 0.00 0.00 0.00 3.08
496 524 8.448615 CGTAAGAAATAAAAGGGTTTGTCTAGG 58.551 37.037 0.00 0.00 43.02 3.02
497 525 8.996271 ACGTAAGAAATAAAAGGGTTTGTCTAG 58.004 33.333 0.00 0.00 43.62 2.43
498 526 8.907222 ACGTAAGAAATAAAAGGGTTTGTCTA 57.093 30.769 0.00 0.00 43.62 2.59
499 527 7.812690 ACGTAAGAAATAAAAGGGTTTGTCT 57.187 32.000 0.00 0.00 43.62 3.41
500 528 8.992073 TCTACGTAAGAAATAAAAGGGTTTGTC 58.008 33.333 0.00 0.00 43.62 3.18
501 529 8.777413 GTCTACGTAAGAAATAAAAGGGTTTGT 58.223 33.333 0.00 0.00 43.62 2.83
502 530 8.776470 TGTCTACGTAAGAAATAAAAGGGTTTG 58.224 33.333 0.00 0.00 43.62 2.93
503 531 8.777413 GTGTCTACGTAAGAAATAAAAGGGTTT 58.223 33.333 0.00 0.00 43.62 3.27
504 532 7.116805 CGTGTCTACGTAAGAAATAAAAGGGTT 59.883 37.037 0.00 0.00 44.99 4.11
505 533 6.587608 CGTGTCTACGTAAGAAATAAAAGGGT 59.412 38.462 0.00 0.00 44.99 4.34
506 534 6.986118 CGTGTCTACGTAAGAAATAAAAGGG 58.014 40.000 0.00 0.00 44.99 3.95
604 640 5.302568 TCGCCCGGTCTATTCTAAATTCTAA 59.697 40.000 0.00 0.00 0.00 2.10
605 641 4.828939 TCGCCCGGTCTATTCTAAATTCTA 59.171 41.667 0.00 0.00 0.00 2.10
606 642 3.640029 TCGCCCGGTCTATTCTAAATTCT 59.360 43.478 0.00 0.00 0.00 2.40
607 643 3.739810 GTCGCCCGGTCTATTCTAAATTC 59.260 47.826 0.00 0.00 0.00 2.17
608 644 3.725490 GTCGCCCGGTCTATTCTAAATT 58.275 45.455 0.00 0.00 0.00 1.82
609 645 2.288030 CGTCGCCCGGTCTATTCTAAAT 60.288 50.000 0.00 0.00 0.00 1.40
610 646 1.066002 CGTCGCCCGGTCTATTCTAAA 59.934 52.381 0.00 0.00 0.00 1.85
625 661 1.276844 GTGCTCCATTATGCGTCGC 59.723 57.895 11.10 11.10 0.00 5.19
670 706 0.798776 GCGTGTCTCCTCCATTGTTG 59.201 55.000 0.00 0.00 0.00 3.33
672 708 1.296715 GGCGTGTCTCCTCCATTGT 59.703 57.895 0.00 0.00 0.00 2.71
673 709 1.811266 CGGCGTGTCTCCTCCATTG 60.811 63.158 0.00 0.00 0.00 2.82
807 843 0.826256 GGTTGGTGAGGTTTGGGGTC 60.826 60.000 0.00 0.00 0.00 4.46
848 884 5.556006 TTGTGGGCAACTAACTAAGTACT 57.444 39.130 0.00 0.00 37.50 2.73
850 886 5.065235 GGTTTGTGGGCAACTAACTAAGTA 58.935 41.667 16.90 0.00 42.16 2.24
851 887 3.887110 GGTTTGTGGGCAACTAACTAAGT 59.113 43.478 16.90 0.00 42.16 2.24
852 888 3.886505 TGGTTTGTGGGCAACTAACTAAG 59.113 43.478 16.90 0.00 42.16 2.18
876 912 4.437239 AGAGTGTGAGGATAAAATGAGCG 58.563 43.478 0.00 0.00 0.00 5.03
929 965 2.512515 CGAGCACCTAAGCTGGCC 60.513 66.667 0.00 0.00 46.75 5.36
954 990 1.152984 TGATTATGGGTGGCGCTGG 60.153 57.895 7.64 0.00 0.00 4.85
963 999 1.498865 GCCGACGCACTGATTATGGG 61.499 60.000 0.00 0.00 36.17 4.00
968 1008 1.884075 TAGTGGCCGACGCACTGATT 61.884 55.000 15.65 0.00 36.38 2.57
1086 1129 4.880426 ATCCCCGCCGACATCCCT 62.880 66.667 0.00 0.00 0.00 4.20
1119 1162 3.393970 TGGCCGCTGAGGAAGGAG 61.394 66.667 0.09 0.00 45.00 3.69
1212 1255 4.436998 CCGAGGACCAGCACCGTC 62.437 72.222 0.00 0.00 0.00 4.79
1504 1547 2.670934 CTGCTTGAGCGCCTTGGT 60.671 61.111 2.29 0.00 45.83 3.67
1551 1594 4.814294 AACTCGATGGGCGCCGAC 62.814 66.667 22.54 13.08 40.61 4.79
1552 1595 4.508128 GAACTCGATGGGCGCCGA 62.508 66.667 22.54 19.14 40.61 5.54
2259 2311 4.156922 CACTGGTCTTACTCTCACAGTAGG 59.843 50.000 0.00 0.00 38.90 3.18
2271 2329 4.021894 TCTCTCTGCTTTCACTGGTCTTAC 60.022 45.833 0.00 0.00 0.00 2.34
2273 2331 2.968574 TCTCTCTGCTTTCACTGGTCTT 59.031 45.455 0.00 0.00 0.00 3.01
2274 2332 2.562298 CTCTCTCTGCTTTCACTGGTCT 59.438 50.000 0.00 0.00 0.00 3.85
2276 2334 1.001860 GCTCTCTCTGCTTTCACTGGT 59.998 52.381 0.00 0.00 0.00 4.00
2310 2368 1.815421 CGAGGAATGTGGCCGGAAG 60.815 63.158 5.05 0.00 0.00 3.46
2349 2407 0.465097 ATGGCTGAAAGAGGATGGCG 60.465 55.000 0.00 0.00 34.07 5.69
2388 2459 2.095461 ACACAGAGAGAATAGCTGCGA 58.905 47.619 0.00 0.00 33.03 5.10
2395 2466 9.942850 TGTTTCATGAATTACACAGAGAGAATA 57.057 29.630 9.40 0.00 0.00 1.75
2399 2470 8.509690 ACAATGTTTCATGAATTACACAGAGAG 58.490 33.333 13.77 7.35 0.00 3.20
2435 2508 7.551262 ACCAGCACGTAAAAAGATCAACATATA 59.449 33.333 0.00 0.00 0.00 0.86
2436 2509 6.374333 ACCAGCACGTAAAAAGATCAACATAT 59.626 34.615 0.00 0.00 0.00 1.78
2437 2510 5.703592 ACCAGCACGTAAAAAGATCAACATA 59.296 36.000 0.00 0.00 0.00 2.29
2438 2511 4.518970 ACCAGCACGTAAAAAGATCAACAT 59.481 37.500 0.00 0.00 0.00 2.71
2443 2516 4.148891 CGAAACCAGCACGTAAAAAGATC 58.851 43.478 0.00 0.00 0.00 2.75
2444 2517 3.562557 ACGAAACCAGCACGTAAAAAGAT 59.437 39.130 0.00 0.00 38.47 2.40
2445 2518 2.937799 ACGAAACCAGCACGTAAAAAGA 59.062 40.909 0.00 0.00 38.47 2.52
2446 2519 3.285745 GACGAAACCAGCACGTAAAAAG 58.714 45.455 0.00 0.00 40.29 2.27
2447 2520 2.285718 CGACGAAACCAGCACGTAAAAA 60.286 45.455 0.00 0.00 40.29 1.94
2466 2540 2.137523 GTAACGGCTTTGTTCTTCCGA 58.862 47.619 6.52 0.00 44.23 4.55
2468 2542 2.225727 CCTGTAACGGCTTTGTTCTTCC 59.774 50.000 0.00 0.00 33.32 3.46
2489 2564 4.927782 TGTGTCGGTGTGGCTGCC 62.928 66.667 12.87 12.87 0.00 4.85
2524 2599 1.067416 GTGTCTGCGTGAGTGGTGA 59.933 57.895 0.00 0.00 0.00 4.02
2537 2612 3.937814 TGTTTATTCATGGAGCGTGTCT 58.062 40.909 0.00 0.00 0.00 3.41
2538 2613 4.083537 TGTTGTTTATTCATGGAGCGTGTC 60.084 41.667 0.00 0.00 0.00 3.67
2539 2614 3.818210 TGTTGTTTATTCATGGAGCGTGT 59.182 39.130 0.00 0.00 0.00 4.49
2540 2615 4.158384 GTGTTGTTTATTCATGGAGCGTG 58.842 43.478 0.00 0.00 0.00 5.34
2541 2616 3.190535 GGTGTTGTTTATTCATGGAGCGT 59.809 43.478 0.00 0.00 0.00 5.07
2542 2617 3.427503 GGGTGTTGTTTATTCATGGAGCG 60.428 47.826 0.00 0.00 0.00 5.03
2544 2619 4.006989 TCGGGTGTTGTTTATTCATGGAG 58.993 43.478 0.00 0.00 0.00 3.86
2545 2620 3.754323 GTCGGGTGTTGTTTATTCATGGA 59.246 43.478 0.00 0.00 0.00 3.41
2546 2621 3.425625 CGTCGGGTGTTGTTTATTCATGG 60.426 47.826 0.00 0.00 0.00 3.66
2547 2622 3.433957 TCGTCGGGTGTTGTTTATTCATG 59.566 43.478 0.00 0.00 0.00 3.07
2594 2669 6.347696 TCCATCCAATTTACAATTCCATTGC 58.652 36.000 0.00 0.00 43.98 3.56
2639 2714 5.164954 CAAAGAGGAGTAAAACTCGAGAGG 58.835 45.833 21.68 0.00 45.96 3.69
2790 2879 0.527565 GCGAGTGGAATGGCATTTGT 59.472 50.000 14.93 0.00 0.00 2.83
2791 2880 0.527113 TGCGAGTGGAATGGCATTTG 59.473 50.000 14.93 0.00 0.00 2.32
2792 2881 0.813184 CTGCGAGTGGAATGGCATTT 59.187 50.000 14.93 0.00 33.23 2.32
2793 2882 1.660560 GCTGCGAGTGGAATGGCATT 61.661 55.000 13.54 13.54 33.23 3.56
2855 2979 1.681780 GGCCCGGTGAAATTGATGAGA 60.682 52.381 0.00 0.00 0.00 3.27
2857 2981 0.038890 TGGCCCGGTGAAATTGATGA 59.961 50.000 0.00 0.00 0.00 2.92
2858 2982 0.457035 CTGGCCCGGTGAAATTGATG 59.543 55.000 0.00 0.00 0.00 3.07
2881 3005 2.975489 AGATGGTCCTGAACTTGTGAGT 59.025 45.455 0.00 0.00 37.87 3.41
2885 3009 3.906846 AGAAGAGATGGTCCTGAACTTGT 59.093 43.478 0.00 0.00 0.00 3.16
3001 3134 1.669265 GCACGGTCTTATTTACTGCCC 59.331 52.381 0.00 0.00 0.00 5.36
3004 3137 3.857052 TCCAGCACGGTCTTATTTACTG 58.143 45.455 0.00 0.00 35.57 2.74
3006 3139 2.608090 GCTCCAGCACGGTCTTATTTAC 59.392 50.000 0.00 0.00 41.59 2.01
3007 3140 2.500098 AGCTCCAGCACGGTCTTATTTA 59.500 45.455 0.48 0.00 45.16 1.40
3008 3141 1.279271 AGCTCCAGCACGGTCTTATTT 59.721 47.619 0.48 0.00 45.16 1.40
3009 3142 0.905357 AGCTCCAGCACGGTCTTATT 59.095 50.000 0.48 0.00 45.16 1.40
3011 3144 0.815734 GTAGCTCCAGCACGGTCTTA 59.184 55.000 0.48 0.00 45.16 2.10
3013 3146 0.900647 AAGTAGCTCCAGCACGGTCT 60.901 55.000 0.48 0.00 45.16 3.85
3014 3147 0.037232 AAAGTAGCTCCAGCACGGTC 60.037 55.000 0.48 0.00 45.16 4.79
3016 3149 2.380084 TAAAAGTAGCTCCAGCACGG 57.620 50.000 0.48 0.00 45.16 4.94
3017 3150 3.307242 GTGATAAAAGTAGCTCCAGCACG 59.693 47.826 0.48 0.00 45.16 5.34
3018 3151 4.253685 TGTGATAAAAGTAGCTCCAGCAC 58.746 43.478 0.48 0.00 45.16 4.40
3034 3167 3.815809 CCCTAATTTTCCGGCTGTGATA 58.184 45.455 0.00 0.00 0.00 2.15
3037 3170 0.455815 GCCCTAATTTTCCGGCTGTG 59.544 55.000 0.00 0.00 38.41 3.66
3041 3174 0.249447 GCATGCCCTAATTTTCCGGC 60.249 55.000 6.36 0.00 41.99 6.13
3045 3178 4.082026 ACAAGAGTGCATGCCCTAATTTTC 60.082 41.667 16.68 0.00 0.00 2.29
3046 3179 3.834231 ACAAGAGTGCATGCCCTAATTTT 59.166 39.130 16.68 0.00 0.00 1.82
3053 3186 0.524862 CTTCACAAGAGTGCATGCCC 59.475 55.000 16.68 2.78 45.49 5.36
3059 3192 0.880278 TCACCGCTTCACAAGAGTGC 60.880 55.000 0.00 0.00 45.49 4.40
3061 3194 2.213499 CTTTCACCGCTTCACAAGAGT 58.787 47.619 0.00 0.00 0.00 3.24
3062 3195 2.213499 ACTTTCACCGCTTCACAAGAG 58.787 47.619 0.00 0.00 0.00 2.85
3063 3196 2.325583 ACTTTCACCGCTTCACAAGA 57.674 45.000 0.00 0.00 0.00 3.02
3065 3198 3.188159 AGTACTTTCACCGCTTCACAA 57.812 42.857 0.00 0.00 0.00 3.33
3066 3199 2.869801 CAAGTACTTTCACCGCTTCACA 59.130 45.455 5.07 0.00 0.00 3.58
3067 3200 2.870411 ACAAGTACTTTCACCGCTTCAC 59.130 45.455 5.07 0.00 0.00 3.18
3068 3201 3.188159 ACAAGTACTTTCACCGCTTCA 57.812 42.857 5.07 0.00 0.00 3.02
3069 3202 4.304939 ACTACAAGTACTTTCACCGCTTC 58.695 43.478 5.07 0.00 0.00 3.86
3070 3203 4.332428 ACTACAAGTACTTTCACCGCTT 57.668 40.909 5.07 0.00 0.00 4.68
3071 3204 4.056050 CAACTACAAGTACTTTCACCGCT 58.944 43.478 5.07 0.00 0.00 5.52
3073 3206 3.805422 TGCAACTACAAGTACTTTCACCG 59.195 43.478 5.07 0.00 0.00 4.94
3074 3207 4.573201 TGTGCAACTACAAGTACTTTCACC 59.427 41.667 5.07 0.00 38.04 4.02
3103 3238 3.010808 ACGGTAATCATTTCTTTCCCCCA 59.989 43.478 0.00 0.00 0.00 4.96
3107 3242 5.501897 CGTGCTACGGTAATCATTTCTTTCC 60.502 44.000 1.40 0.00 38.08 3.13
3132 3267 1.815817 ATGCGTGTTGCCTTTTCCCC 61.816 55.000 0.00 0.00 45.60 4.81
3142 3277 2.478746 GCGGGTACATGCGTGTTG 59.521 61.111 18.34 6.41 39.77 3.33
3158 3293 4.899687 CATGTGATGCAGCGCCGC 62.900 66.667 13.74 9.12 0.00 6.53
3161 3296 0.379316 TTGATCATGTGATGCAGCGC 59.621 50.000 8.93 8.93 34.37 5.92
3162 3297 2.032924 ACATTGATCATGTGATGCAGCG 59.967 45.455 13.70 0.00 45.12 5.18
3213 3353 1.203052 CACTTTAGCAATGGCCACTGG 59.797 52.381 17.28 6.02 42.56 4.00
3214 3354 1.403249 GCACTTTAGCAATGGCCACTG 60.403 52.381 10.56 10.56 42.56 3.66
3215 3355 0.890683 GCACTTTAGCAATGGCCACT 59.109 50.000 8.16 2.86 42.56 4.00
3216 3356 0.890683 AGCACTTTAGCAATGGCCAC 59.109 50.000 8.16 0.00 42.56 5.01
3217 3357 0.889994 CAGCACTTTAGCAATGGCCA 59.110 50.000 8.56 8.56 42.56 5.36
3218 3358 0.890683 ACAGCACTTTAGCAATGGCC 59.109 50.000 0.00 0.00 42.56 5.36
3219 3359 2.749621 ACTACAGCACTTTAGCAATGGC 59.250 45.455 0.00 0.00 41.61 4.40
3220 3360 6.683974 AATACTACAGCACTTTAGCAATGG 57.316 37.500 0.00 0.00 36.85 3.16
3221 3361 8.664798 TGTAAATACTACAGCACTTTAGCAATG 58.335 33.333 0.00 0.00 36.85 2.82
3222 3362 8.665685 GTGTAAATACTACAGCACTTTAGCAAT 58.334 33.333 0.00 0.00 36.85 3.56
3223 3363 7.658167 TGTGTAAATACTACAGCACTTTAGCAA 59.342 33.333 0.00 0.00 36.85 3.91
3224 3364 7.156000 TGTGTAAATACTACAGCACTTTAGCA 58.844 34.615 0.00 0.00 36.85 3.49
3225 3365 7.591006 TGTGTAAATACTACAGCACTTTAGC 57.409 36.000 0.00 0.00 0.00 3.09
3226 3366 9.419297 TCTTGTGTAAATACTACAGCACTTTAG 57.581 33.333 0.00 0.00 0.00 1.85
3227 3367 9.767228 TTCTTGTGTAAATACTACAGCACTTTA 57.233 29.630 0.00 0.00 0.00 1.85
3228 3368 8.671384 TTCTTGTGTAAATACTACAGCACTTT 57.329 30.769 0.00 0.00 0.00 2.66
3229 3369 8.671384 TTTCTTGTGTAAATACTACAGCACTT 57.329 30.769 0.00 0.00 0.00 3.16
3230 3370 8.848474 ATTTCTTGTGTAAATACTACAGCACT 57.152 30.769 0.00 0.00 0.00 4.40
3231 3371 8.717821 TGATTTCTTGTGTAAATACTACAGCAC 58.282 33.333 0.00 0.00 0.00 4.40
3232 3372 8.717821 GTGATTTCTTGTGTAAATACTACAGCA 58.282 33.333 0.00 0.00 0.00 4.41
3233 3373 8.936864 AGTGATTTCTTGTGTAAATACTACAGC 58.063 33.333 0.00 0.00 0.00 4.40
3242 3382 9.349713 AGGAATTGTAGTGATTTCTTGTGTAAA 57.650 29.630 0.00 0.00 0.00 2.01
3243 3383 8.918202 AGGAATTGTAGTGATTTCTTGTGTAA 57.082 30.769 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.