Multiple sequence alignment - TraesCS5A01G490200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G490200 chr5A 100.000 5765 0 0 1 5765 659727447 659721683 0.000000e+00 10647
1 TraesCS5A01G490200 chr5A 96.111 180 4 3 1888 2067 361454628 361454804 2.030000e-74 291
2 TraesCS5A01G490200 chr4B 92.085 2527 142 37 2058 4550 612760197 612762699 0.000000e+00 3506
3 TraesCS5A01G490200 chr4B 91.157 1832 107 25 95 1889 612758379 612760192 0.000000e+00 2435
4 TraesCS5A01G490200 chr4B 93.218 634 35 6 4547 5179 612763068 612763694 0.000000e+00 926
5 TraesCS5A01G490200 chr4B 88.325 591 42 15 5177 5762 612763887 612764455 0.000000e+00 684
6 TraesCS5A01G490200 chr4D 95.450 2088 73 18 2053 4130 482774503 482776578 0.000000e+00 3310
7 TraesCS5A01G490200 chr4D 91.381 1752 112 23 160 1892 482772773 482774504 0.000000e+00 2362
8 TraesCS5A01G490200 chr4D 89.617 1541 90 35 4252 5765 482776573 482778070 0.000000e+00 1895
9 TraesCS5A01G490200 chr2A 94.975 199 4 6 1884 2079 496466643 496466838 2.020000e-79 307
10 TraesCS5A01G490200 chr7A 97.143 175 4 1 1881 2054 97887405 97887579 1.570000e-75 294
11 TraesCS5A01G490200 chr7A 97.633 169 4 0 1886 2054 643419920 643420088 2.030000e-74 291
12 TraesCS5A01G490200 chr4A 97.126 174 5 0 1891 2064 594145210 594145383 1.570000e-75 294
13 TraesCS5A01G490200 chr4A 95.580 181 5 3 1877 2054 93926627 93926807 2.630000e-73 287
14 TraesCS5A01G490200 chr6B 97.647 170 4 0 1887 2056 464866054 464866223 5.650000e-75 292
15 TraesCS5A01G490200 chr6A 97.110 173 5 0 1890 2062 1829852 1830024 5.650000e-75 292
16 TraesCS5A01G490200 chr1A 96.591 176 4 2 1891 2065 322177358 322177184 2.030000e-74 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G490200 chr5A 659721683 659727447 5764 True 10647.000000 10647 100.000000 1 5765 1 chr5A.!!$R1 5764
1 TraesCS5A01G490200 chr4B 612758379 612764455 6076 False 1887.750000 3506 91.196250 95 5762 4 chr4B.!!$F1 5667
2 TraesCS5A01G490200 chr4D 482772773 482778070 5297 False 2522.333333 3310 92.149333 160 5765 3 chr4D.!!$F1 5605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.243907 CTGTCGGCTTCGAGGAGAAA 59.756 55.0 0.00 0.0 44.17 2.52 F
1005 1047 0.100503 GTGGTGTTATTGCGATGGGC 59.899 55.0 0.00 0.0 43.96 5.36 F
1860 1902 0.389391 GCTGCACCCTTAGCGATCTA 59.611 55.0 0.00 0.0 33.85 1.98 F
2385 2435 0.532862 AACGCTATGGGCCAGAATCG 60.533 55.0 13.78 16.0 37.74 3.34 F
4177 4252 0.027455 CGACAGCAAACAGTCGCAAA 59.973 50.0 1.91 0.0 46.56 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1323 0.036105 TCTCGGTGCAGAGGTACGTA 60.036 55.000 3.36 0.00 38.71 3.57 R
2385 2435 0.392193 CTCCAGCTGACCACACATCC 60.392 60.000 17.39 0.00 0.00 3.51 R
2997 3050 0.691332 AGAGCCATGATCCATGCGAT 59.309 50.000 0.00 0.00 40.20 4.58 R
4242 4317 1.398390 GAATTAAGACCCGCTGCAGTG 59.602 52.381 20.56 20.56 0.00 3.66 R
5497 6174 0.945743 TGTCACTTGCTGCTACTGCG 60.946 55.000 0.00 0.00 43.34 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.592070 TCTGTCGGCTTCGAGGAG 58.408 61.111 0.00 0.00 44.17 3.69
18 19 1.002502 TCTGTCGGCTTCGAGGAGA 60.003 57.895 0.00 0.00 44.17 3.71
19 20 0.608308 TCTGTCGGCTTCGAGGAGAA 60.608 55.000 0.00 0.00 44.17 2.87
20 21 0.243907 CTGTCGGCTTCGAGGAGAAA 59.756 55.000 0.00 0.00 44.17 2.52
21 22 0.677288 TGTCGGCTTCGAGGAGAAAA 59.323 50.000 0.00 0.00 44.17 2.29
22 23 1.069513 TGTCGGCTTCGAGGAGAAAAA 59.930 47.619 0.00 0.00 44.17 1.94
45 46 4.065281 GGTCCTGGACCGTGACCG 62.065 72.222 28.96 0.00 43.14 4.79
46 47 4.736896 GTCCTGGACCGTGACCGC 62.737 72.222 16.14 0.00 0.00 5.68
51 52 4.446413 GGACCGTGACCGCCGAAT 62.446 66.667 0.00 0.00 0.00 3.34
52 53 2.433664 GACCGTGACCGCCGAATT 60.434 61.111 0.00 0.00 0.00 2.17
53 54 2.433664 ACCGTGACCGCCGAATTC 60.434 61.111 0.00 0.00 0.00 2.17
54 55 2.125673 CCGTGACCGCCGAATTCT 60.126 61.111 3.52 0.00 0.00 2.40
55 56 1.140161 CCGTGACCGCCGAATTCTA 59.860 57.895 3.52 0.00 0.00 2.10
56 57 0.458889 CCGTGACCGCCGAATTCTAA 60.459 55.000 3.52 0.00 0.00 2.10
57 58 1.352114 CGTGACCGCCGAATTCTAAA 58.648 50.000 3.52 0.00 0.00 1.85
58 59 1.727880 CGTGACCGCCGAATTCTAAAA 59.272 47.619 3.52 0.00 0.00 1.52
59 60 2.158058 CGTGACCGCCGAATTCTAAAAA 59.842 45.455 3.52 0.00 0.00 1.94
60 61 3.723835 CGTGACCGCCGAATTCTAAAAAG 60.724 47.826 3.52 0.00 0.00 2.27
61 62 3.434299 GTGACCGCCGAATTCTAAAAAGA 59.566 43.478 3.52 0.00 0.00 2.52
62 63 4.066490 TGACCGCCGAATTCTAAAAAGAA 58.934 39.130 3.52 0.00 0.00 2.52
63 64 4.515944 TGACCGCCGAATTCTAAAAAGAAA 59.484 37.500 3.52 0.00 0.00 2.52
64 65 5.008811 TGACCGCCGAATTCTAAAAAGAAAA 59.991 36.000 3.52 0.00 0.00 2.29
65 66 6.020971 ACCGCCGAATTCTAAAAAGAAAAT 57.979 33.333 3.52 0.00 0.00 1.82
66 67 6.090783 ACCGCCGAATTCTAAAAAGAAAATC 58.909 36.000 3.52 0.00 0.00 2.17
67 68 6.090129 CCGCCGAATTCTAAAAAGAAAATCA 58.910 36.000 3.52 0.00 0.00 2.57
68 69 6.584563 CCGCCGAATTCTAAAAAGAAAATCAA 59.415 34.615 3.52 0.00 0.00 2.57
69 70 7.115663 CCGCCGAATTCTAAAAAGAAAATCAAA 59.884 33.333 3.52 0.00 0.00 2.69
70 71 8.484008 CGCCGAATTCTAAAAAGAAAATCAAAA 58.516 29.630 3.52 0.00 0.00 2.44
78 79 8.967218 TCTAAAAAGAAAATCAAAATGACTGCG 58.033 29.630 0.00 0.00 0.00 5.18
79 80 7.769272 AAAAAGAAAATCAAAATGACTGCGA 57.231 28.000 0.00 0.00 0.00 5.10
80 81 7.769272 AAAAGAAAATCAAAATGACTGCGAA 57.231 28.000 0.00 0.00 0.00 4.70
81 82 7.769272 AAAGAAAATCAAAATGACTGCGAAA 57.231 28.000 0.00 0.00 0.00 3.46
82 83 7.951530 AAGAAAATCAAAATGACTGCGAAAT 57.048 28.000 0.00 0.00 0.00 2.17
83 84 7.951530 AGAAAATCAAAATGACTGCGAAATT 57.048 28.000 0.00 0.00 0.00 1.82
84 85 8.011067 AGAAAATCAAAATGACTGCGAAATTC 57.989 30.769 0.00 0.00 0.00 2.17
85 86 6.710692 AAATCAAAATGACTGCGAAATTCC 57.289 33.333 0.00 0.00 0.00 3.01
86 87 4.844998 TCAAAATGACTGCGAAATTCCA 57.155 36.364 0.00 0.00 0.00 3.53
87 88 5.193663 TCAAAATGACTGCGAAATTCCAA 57.806 34.783 0.00 0.00 0.00 3.53
88 89 5.595885 TCAAAATGACTGCGAAATTCCAAA 58.404 33.333 0.00 0.00 0.00 3.28
89 90 6.045318 TCAAAATGACTGCGAAATTCCAAAA 58.955 32.000 0.00 0.00 0.00 2.44
90 91 6.536582 TCAAAATGACTGCGAAATTCCAAAAA 59.463 30.769 0.00 0.00 0.00 1.94
91 92 6.529463 AAATGACTGCGAAATTCCAAAAAG 57.471 33.333 0.00 0.00 0.00 2.27
92 93 3.976169 TGACTGCGAAATTCCAAAAAGG 58.024 40.909 0.00 0.00 39.47 3.11
143 144 2.363925 AGAGTCGCACCTACCCCC 60.364 66.667 0.00 0.00 0.00 5.40
164 165 0.472352 TCCCCGGCCGGACTATAAAT 60.472 55.000 45.44 0.00 37.50 1.40
165 166 1.203162 TCCCCGGCCGGACTATAAATA 60.203 52.381 45.44 15.64 37.50 1.40
166 167 1.206371 CCCCGGCCGGACTATAAATAG 59.794 57.143 45.44 23.37 37.50 1.73
330 337 4.525949 GCCCGTCGTAAGGCCCTC 62.526 72.222 0.00 0.00 43.76 4.30
331 338 2.758737 CCCGTCGTAAGGCCCTCT 60.759 66.667 0.00 0.00 40.39 3.69
605 612 3.167414 CCCCGAGGGTTTGGTCTT 58.833 61.111 7.48 0.00 38.25 3.01
669 678 1.127951 GTTGGATTTCGTGTAGTGCGG 59.872 52.381 0.00 0.00 0.00 5.69
670 679 0.604073 TGGATTTCGTGTAGTGCGGA 59.396 50.000 0.00 0.00 0.00 5.54
798 807 0.409484 ATCCCCAAGGTTTCCACTGG 59.591 55.000 0.00 0.00 0.00 4.00
806 815 0.402121 GGTTTCCACTGGCTTCCTCT 59.598 55.000 0.00 0.00 0.00 3.69
807 816 1.628846 GGTTTCCACTGGCTTCCTCTA 59.371 52.381 0.00 0.00 0.00 2.43
808 817 2.039879 GGTTTCCACTGGCTTCCTCTAA 59.960 50.000 0.00 0.00 0.00 2.10
809 818 3.497942 GGTTTCCACTGGCTTCCTCTAAA 60.498 47.826 0.00 0.00 0.00 1.85
810 819 4.336280 GTTTCCACTGGCTTCCTCTAAAT 58.664 43.478 0.00 0.00 0.00 1.40
811 820 4.657814 TTCCACTGGCTTCCTCTAAATT 57.342 40.909 0.00 0.00 0.00 1.82
813 822 4.998051 TCCACTGGCTTCCTCTAAATTTT 58.002 39.130 0.00 0.00 0.00 1.82
814 823 6.134535 TCCACTGGCTTCCTCTAAATTTTA 57.865 37.500 0.00 0.00 0.00 1.52
815 824 6.180472 TCCACTGGCTTCCTCTAAATTTTAG 58.820 40.000 9.48 9.48 0.00 1.85
862 892 4.399303 CCATGGGTTACTGATCAAGTTTCC 59.601 45.833 2.85 4.02 40.56 3.13
931 973 2.370189 ACCAGTTCTCCAGGTTTCTCTG 59.630 50.000 0.00 0.00 29.58 3.35
944 986 6.360618 CAGGTTTCTCTGGCTATTTAAGGAT 58.639 40.000 0.00 0.00 0.00 3.24
946 988 6.388394 AGGTTTCTCTGGCTATTTAAGGATCT 59.612 38.462 0.00 0.00 0.00 2.75
948 990 8.211629 GGTTTCTCTGGCTATTTAAGGATCTAA 58.788 37.037 0.00 0.00 0.00 2.10
981 1023 1.228552 TGGGAACTTTCAGCCTGCC 60.229 57.895 0.00 0.00 0.00 4.85
998 1040 1.654023 GCCGAGGGTGGTGTTATTGC 61.654 60.000 0.00 0.00 0.00 3.56
1005 1047 0.100503 GTGGTGTTATTGCGATGGGC 59.899 55.000 0.00 0.00 43.96 5.36
1239 1281 2.187163 GCGGACCTAAGGGAGCAC 59.813 66.667 0.00 0.00 36.25 4.40
1281 1323 2.846532 CAGGGCCAGTTTGGGACT 59.153 61.111 6.18 0.00 38.19 3.85
1389 1431 1.815421 GGATGTGCGCCGTGAGATT 60.815 57.895 4.18 0.00 0.00 2.40
1521 1563 2.194201 TTGACCGAATTCAGGGGAAC 57.806 50.000 16.99 6.93 35.46 3.62
1623 1665 3.257561 CACCGCGATCTCAAGCCG 61.258 66.667 8.23 0.00 0.00 5.52
1690 1732 4.032310 AGCAATTGATTTTGGCCTATCCA 58.968 39.130 10.34 0.00 44.85 3.41
1818 1860 7.865385 TGTAATATTTTGTTGACACTGAAAGGC 59.135 33.333 0.00 0.00 39.30 4.35
1855 1897 2.803155 TTCCTGCTGCACCCTTAGCG 62.803 60.000 0.00 0.00 42.74 4.26
1859 1901 1.144936 GCTGCACCCTTAGCGATCT 59.855 57.895 0.00 0.00 33.85 2.75
1860 1902 0.389391 GCTGCACCCTTAGCGATCTA 59.611 55.000 0.00 0.00 33.85 1.98
1892 1934 4.679654 CCGCCACTTCAAAATTCAAACTAC 59.320 41.667 0.00 0.00 0.00 2.73
1893 1935 5.507315 CCGCCACTTCAAAATTCAAACTACT 60.507 40.000 0.00 0.00 0.00 2.57
1894 1936 5.625311 CGCCACTTCAAAATTCAAACTACTC 59.375 40.000 0.00 0.00 0.00 2.59
1895 1937 5.920840 GCCACTTCAAAATTCAAACTACTCC 59.079 40.000 0.00 0.00 0.00 3.85
1896 1938 6.447162 CCACTTCAAAATTCAAACTACTCCC 58.553 40.000 0.00 0.00 0.00 4.30
1897 1939 6.265422 CCACTTCAAAATTCAAACTACTCCCT 59.735 38.462 0.00 0.00 0.00 4.20
1898 1940 7.363431 CACTTCAAAATTCAAACTACTCCCTC 58.637 38.462 0.00 0.00 0.00 4.30
1899 1941 7.229506 CACTTCAAAATTCAAACTACTCCCTCT 59.770 37.037 0.00 0.00 0.00 3.69
1900 1942 7.229506 ACTTCAAAATTCAAACTACTCCCTCTG 59.770 37.037 0.00 0.00 0.00 3.35
1901 1943 6.601332 TCAAAATTCAAACTACTCCCTCTGT 58.399 36.000 0.00 0.00 0.00 3.41
1902 1944 7.060421 TCAAAATTCAAACTACTCCCTCTGTT 58.940 34.615 0.00 0.00 0.00 3.16
1903 1945 7.228706 TCAAAATTCAAACTACTCCCTCTGTTC 59.771 37.037 0.00 0.00 0.00 3.18
1904 1946 4.618920 TTCAAACTACTCCCTCTGTTCC 57.381 45.455 0.00 0.00 0.00 3.62
1905 1947 3.858135 TCAAACTACTCCCTCTGTTCCT 58.142 45.455 0.00 0.00 0.00 3.36
1906 1948 5.006896 TCAAACTACTCCCTCTGTTCCTA 57.993 43.478 0.00 0.00 0.00 2.94
1907 1949 5.399991 TCAAACTACTCCCTCTGTTCCTAA 58.600 41.667 0.00 0.00 0.00 2.69
1908 1950 5.842328 TCAAACTACTCCCTCTGTTCCTAAA 59.158 40.000 0.00 0.00 0.00 1.85
1909 1951 6.500751 TCAAACTACTCCCTCTGTTCCTAAAT 59.499 38.462 0.00 0.00 0.00 1.40
1910 1952 7.676893 TCAAACTACTCCCTCTGTTCCTAAATA 59.323 37.037 0.00 0.00 0.00 1.40
1911 1953 8.487028 CAAACTACTCCCTCTGTTCCTAAATAT 58.513 37.037 0.00 0.00 0.00 1.28
1912 1954 8.625467 AACTACTCCCTCTGTTCCTAAATATT 57.375 34.615 0.00 0.00 0.00 1.28
1913 1955 8.625467 ACTACTCCCTCTGTTCCTAAATATTT 57.375 34.615 5.89 5.89 0.00 1.40
1914 1956 8.487028 ACTACTCCCTCTGTTCCTAAATATTTG 58.513 37.037 11.05 1.40 0.00 2.32
1915 1957 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
1916 1958 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
1917 1959 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
1918 1960 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
1919 1961 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
1920 1962 8.678199 CCCTCTGTTCCTAAATATTTGTCTTTC 58.322 37.037 11.05 0.00 0.00 2.62
1921 1963 9.454859 CCTCTGTTCCTAAATATTTGTCTTTCT 57.545 33.333 11.05 0.00 0.00 2.52
1948 1990 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
1949 1991 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
1950 1992 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
1951 1993 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
1952 1994 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
1954 1996 7.200455 TCAAATGACTACTACATACGGATGTG 58.800 38.462 23.85 14.95 46.11 3.21
1955 1997 6.710597 AATGACTACTACATACGGATGTGT 57.289 37.500 23.85 19.50 46.11 3.72
1956 1998 5.494632 TGACTACTACATACGGATGTGTG 57.505 43.478 23.85 17.20 46.11 3.82
1958 2000 6.114767 TGACTACTACATACGGATGTGTGTA 58.885 40.000 23.85 21.52 46.96 2.90
1965 2007 6.650427 ACATACGGATGTGTGTAGACATAT 57.350 37.500 13.83 1.68 46.96 1.78
1966 2008 7.050970 ACATACGGATGTGTGTAGACATATT 57.949 36.000 13.83 0.00 46.96 1.28
1967 2009 7.497595 ACATACGGATGTGTGTAGACATATTT 58.502 34.615 13.83 0.00 46.96 1.40
1968 2010 7.985184 ACATACGGATGTGTGTAGACATATTTT 59.015 33.333 13.83 0.00 46.96 1.82
1969 2011 9.471084 CATACGGATGTGTGTAGACATATTTTA 57.529 33.333 0.00 0.00 36.67 1.52
1971 2013 8.780846 ACGGATGTGTGTAGACATATTTTAAA 57.219 30.769 3.74 0.00 36.67 1.52
1972 2014 8.879759 ACGGATGTGTGTAGACATATTTTAAAG 58.120 33.333 3.74 0.00 36.67 1.85
1973 2015 8.879759 CGGATGTGTGTAGACATATTTTAAAGT 58.120 33.333 3.74 0.00 36.67 2.66
1974 2016 9.988350 GGATGTGTGTAGACATATTTTAAAGTG 57.012 33.333 3.74 0.00 36.67 3.16
1992 2034 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
1993 2035 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
1994 2036 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1995 2037 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1996 2038 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1997 2039 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1998 2040 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1999 2041 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2000 2042 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2001 2043 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2002 2044 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2003 2045 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2004 2046 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2005 2047 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2006 2048 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2007 2049 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2008 2050 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2009 2051 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2010 2052 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
2011 2053 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
2012 2054 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
2013 2055 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
2014 2056 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
2015 2057 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
2016 2058 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
2017 2059 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
2018 2060 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
2019 2061 6.367695 CCGTATGTAGTCACTTGTTGAAATGA 59.632 38.462 0.00 0.00 35.39 2.57
2020 2062 7.227461 CGTATGTAGTCACTTGTTGAAATGAC 58.773 38.462 0.00 0.00 41.47 3.06
2028 2070 8.142994 GTCACTTGTTGAAATGACTAGAAAGA 57.857 34.615 0.00 0.00 38.72 2.52
2029 2071 8.064814 GTCACTTGTTGAAATGACTAGAAAGAC 58.935 37.037 0.00 0.00 38.72 3.01
2030 2072 7.768582 TCACTTGTTGAAATGACTAGAAAGACA 59.231 33.333 0.00 0.00 0.00 3.41
2031 2073 8.397906 CACTTGTTGAAATGACTAGAAAGACAA 58.602 33.333 0.00 0.00 31.23 3.18
2032 2074 8.616076 ACTTGTTGAAATGACTAGAAAGACAAG 58.384 33.333 0.00 0.00 43.36 3.16
2033 2075 8.506168 TTGTTGAAATGACTAGAAAGACAAGT 57.494 30.769 0.00 0.00 31.23 3.16
2034 2076 9.607988 TTGTTGAAATGACTAGAAAGACAAGTA 57.392 29.630 0.00 0.00 31.23 2.24
2035 2077 9.778741 TGTTGAAATGACTAGAAAGACAAGTAT 57.221 29.630 0.00 0.00 31.23 2.12
2043 2085 9.924650 TGACTAGAAAGACAAGTATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
2044 2086 8.983307 ACTAGAAAGACAAGTATTTAGGAACG 57.017 34.615 0.00 0.00 0.00 3.95
2045 2087 8.033626 ACTAGAAAGACAAGTATTTAGGAACGG 58.966 37.037 0.00 0.00 0.00 4.44
2046 2088 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2047 2089 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2048 2090 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2049 2091 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2050 2092 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2051 2093 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2052 2094 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
2053 2095 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
2064 2106 6.491403 GGAACGGAGGGAGTAGTATATAACAA 59.509 42.308 0.00 0.00 0.00 2.83
2065 2107 7.014615 GGAACGGAGGGAGTAGTATATAACAAA 59.985 40.741 0.00 0.00 0.00 2.83
2233 2283 4.849235 TCTGCATTATATGTACCCATCCCA 59.151 41.667 0.00 0.00 32.29 4.37
2234 2284 5.492162 TCTGCATTATATGTACCCATCCCAT 59.508 40.000 0.00 0.00 32.29 4.00
2239 2289 6.523035 TTATATGTACCCATCCCATGTGTT 57.477 37.500 0.00 0.00 32.29 3.32
2385 2435 0.532862 AACGCTATGGGCCAGAATCG 60.533 55.000 13.78 16.00 37.74 3.34
2468 2518 5.335976 GGGCAGGTGATTTCTTTAAACTCTG 60.336 44.000 0.00 0.00 0.00 3.35
2509 2559 5.385198 ACTGTCTTCCTGGAATTGCTAAAA 58.615 37.500 10.03 0.00 0.00 1.52
2514 2564 7.178983 TGTCTTCCTGGAATTGCTAAAATGATT 59.821 33.333 10.03 0.00 0.00 2.57
2593 2643 3.026694 CCTTGATTTGGAATCAGACCCC 58.973 50.000 3.85 0.00 0.00 4.95
2723 2773 8.922931 ATTTATTTCTTCACCCTTGCAAATTT 57.077 26.923 0.00 0.00 0.00 1.82
2821 2871 2.112998 CAAAATGGGATGGCCACTGAT 58.887 47.619 8.16 0.00 35.15 2.90
3247 3303 0.109723 TCAACTGTGTGGGTTAGGCC 59.890 55.000 0.00 0.00 0.00 5.19
3332 3398 4.703897 CCCTGTTTCTTCTGTGACACTTA 58.296 43.478 7.20 0.00 0.00 2.24
3520 3586 5.989777 GTGATATAATGGAAGCGGTAAGTGT 59.010 40.000 0.00 0.00 0.00 3.55
3538 3604 5.420725 AGTGTGTGCCTCTGATTATTACA 57.579 39.130 0.00 0.00 0.00 2.41
3550 3616 5.092554 TGATTATTACAAAGGCTCGTCCA 57.907 39.130 0.00 0.00 37.29 4.02
3660 3728 3.333680 TCCTCTGTTGGAAAAGGCCTAAT 59.666 43.478 5.16 0.00 32.39 1.73
3698 3766 5.105269 TGCTGTGATGACATATGGCATTTTT 60.105 36.000 24.86 3.48 45.42 1.94
3740 3810 9.457110 CTAAGCTGTACATATATAGTATGCAGC 57.543 37.037 18.19 18.19 39.31 5.25
4012 4084 4.580167 GCCTGTGCAGAATATAACATGGAA 59.420 41.667 0.00 0.00 37.47 3.53
4075 4147 7.279981 CAGAACAATGTAAGTCGATTATCCCAA 59.720 37.037 0.00 0.00 0.00 4.12
4131 4206 9.431887 GTTAGTATCATTTAACTGTGGTTCTGA 57.568 33.333 0.00 0.00 36.92 3.27
4143 4218 4.380531 TGTGGTTCTGACTCATGAAGAAC 58.619 43.478 22.45 22.45 45.87 3.01
4156 4231 6.483640 ACTCATGAAGAACCTGTAACACTTTC 59.516 38.462 0.00 0.00 0.00 2.62
4162 4237 1.202440 ACCTGTAACACTTTCGCGACA 60.202 47.619 9.15 0.00 0.00 4.35
4163 4238 1.455786 CCTGTAACACTTTCGCGACAG 59.544 52.381 20.19 20.19 35.22 3.51
4166 4241 1.259507 GTAACACTTTCGCGACAGCAA 59.740 47.619 21.57 6.48 45.49 3.91
4167 4242 0.730265 AACACTTTCGCGACAGCAAA 59.270 45.000 21.57 6.09 45.49 3.68
4168 4243 0.027586 ACACTTTCGCGACAGCAAAC 59.972 50.000 21.57 0.00 45.49 2.93
4170 4245 0.304705 ACTTTCGCGACAGCAAACAG 59.695 50.000 21.57 4.51 45.49 3.16
4171 4246 0.304705 CTTTCGCGACAGCAAACAGT 59.695 50.000 9.15 0.00 45.49 3.55
4172 4247 0.303493 TTTCGCGACAGCAAACAGTC 59.697 50.000 9.15 0.00 45.49 3.51
4175 4250 3.318875 CGACAGCAAACAGTCGCA 58.681 55.556 1.91 0.00 46.56 5.10
4176 4251 1.641140 CGACAGCAAACAGTCGCAA 59.359 52.632 1.91 0.00 46.56 4.85
4177 4252 0.027455 CGACAGCAAACAGTCGCAAA 59.973 50.000 1.91 0.00 46.56 3.68
4178 4253 1.530852 CGACAGCAAACAGTCGCAAAA 60.531 47.619 1.91 0.00 46.56 2.44
4179 4254 2.111756 GACAGCAAACAGTCGCAAAAG 58.888 47.619 0.00 0.00 0.00 2.27
4180 4255 1.472480 ACAGCAAACAGTCGCAAAAGT 59.528 42.857 0.00 0.00 0.00 2.66
4181 4256 1.847999 CAGCAAACAGTCGCAAAAGTG 59.152 47.619 0.00 0.00 0.00 3.16
4182 4257 1.472480 AGCAAACAGTCGCAAAAGTGT 59.528 42.857 0.00 0.00 34.25 3.55
4183 4258 2.094752 AGCAAACAGTCGCAAAAGTGTT 60.095 40.909 0.00 0.00 43.05 3.32
4184 4259 3.127895 AGCAAACAGTCGCAAAAGTGTTA 59.872 39.130 4.84 0.00 40.94 2.41
4185 4260 3.482110 GCAAACAGTCGCAAAAGTGTTAG 59.518 43.478 4.84 0.00 40.94 2.34
4186 4261 3.963383 AACAGTCGCAAAAGTGTTAGG 57.037 42.857 2.95 0.00 40.22 2.69
4187 4262 1.602377 ACAGTCGCAAAAGTGTTAGGC 59.398 47.619 0.00 0.00 28.22 3.93
4188 4263 1.601903 CAGTCGCAAAAGTGTTAGGCA 59.398 47.619 0.00 0.00 0.00 4.75
4189 4264 2.226437 CAGTCGCAAAAGTGTTAGGCAT 59.774 45.455 0.00 0.00 0.00 4.40
4192 4267 4.700213 AGTCGCAAAAGTGTTAGGCATATT 59.300 37.500 0.00 0.00 0.00 1.28
4242 4317 2.952310 GGGACTTGCATCTTTGATACCC 59.048 50.000 0.00 0.00 0.00 3.69
4250 4325 2.113860 TCTTTGATACCCACTGCAGC 57.886 50.000 15.27 0.00 0.00 5.25
4297 4372 8.934507 TTTAACTTGTGAAATTGTACCTTTGG 57.065 30.769 0.00 0.00 0.00 3.28
4346 4421 1.270147 GCTACGCCTAATACCCAGTGG 60.270 57.143 0.63 0.63 37.80 4.00
4407 4482 2.120232 GCACGGAACACATAGATCTCG 58.880 52.381 0.00 0.00 0.00 4.04
4414 4489 5.278315 CGGAACACATAGATCTCGGATTACA 60.278 44.000 0.00 0.00 0.00 2.41
4422 4497 8.516234 ACATAGATCTCGGATTACAATACAGAC 58.484 37.037 0.00 0.00 0.00 3.51
4680 5130 1.509463 CATGATGCAAGGCAACGCT 59.491 52.632 0.00 0.00 43.62 5.07
4683 5133 1.462616 TGATGCAAGGCAACGCTAAT 58.537 45.000 0.00 0.00 43.62 1.73
4704 5154 2.042297 TGGTGGCAATATTGGACTTGGA 59.958 45.455 17.02 0.00 0.00 3.53
4805 5255 4.233632 TCTCATTGCCATTATGTCCACA 57.766 40.909 0.00 0.00 0.00 4.17
4806 5256 4.598022 TCTCATTGCCATTATGTCCACAA 58.402 39.130 0.00 0.00 0.00 3.33
4855 5305 2.864968 CGAAGTACGGGAAGAGAACAG 58.135 52.381 0.00 0.00 38.46 3.16
4938 5388 1.733399 GAGACAGCGTCGTGGGTTC 60.733 63.158 0.00 0.00 37.67 3.62
5020 5472 1.810030 GAAGTAAGAGGGCGTGCGG 60.810 63.158 0.00 0.00 0.00 5.69
5055 5507 5.877564 TGTTCTTTGTGTGATCAGTTGTGTA 59.122 36.000 0.00 0.00 0.00 2.90
5110 5562 7.364939 ATGAAATGTCATATTCCCCAAGTTTGG 60.365 37.037 0.00 3.85 42.94 3.28
5131 5583 6.736110 TGGTCTTGGTAGTTAGTACTGTTT 57.264 37.500 5.39 0.00 35.78 2.83
5179 5634 3.881089 TGCACAGATCATAATCAAGCAGG 59.119 43.478 0.00 0.00 33.30 4.85
5181 5832 3.252701 CACAGATCATAATCAAGCAGGCC 59.747 47.826 0.00 0.00 34.07 5.19
5211 5870 2.162716 GCTGTCGTTGGTAAGCCAG 58.837 57.895 0.00 0.00 46.91 4.85
5212 5871 1.298859 GCTGTCGTTGGTAAGCCAGG 61.299 60.000 0.00 0.00 46.91 4.45
5213 5872 0.673644 CTGTCGTTGGTAAGCCAGGG 60.674 60.000 0.00 0.00 46.91 4.45
5214 5873 2.038837 GTCGTTGGTAAGCCAGGGC 61.039 63.158 0.97 0.97 46.91 5.19
5215 5874 2.033448 CGTTGGTAAGCCAGGGCA 59.967 61.111 13.63 0.00 46.91 5.36
5216 5875 1.602323 CGTTGGTAAGCCAGGGCAA 60.602 57.895 13.63 0.00 46.91 4.52
5232 5891 1.067916 CAACAAAGGGCTGGCACAC 59.932 57.895 2.88 0.00 0.00 3.82
5269 5928 5.984926 TGATTTTGCAGAGACCAATTTGTTC 59.015 36.000 0.00 0.00 0.00 3.18
5274 5933 4.515191 TGCAGAGACCAATTTGTTCAGTAC 59.485 41.667 0.00 0.00 0.00 2.73
5275 5934 4.083271 GCAGAGACCAATTTGTTCAGTACC 60.083 45.833 0.00 0.00 0.00 3.34
5276 5935 5.063204 CAGAGACCAATTTGTTCAGTACCA 58.937 41.667 0.00 0.00 0.00 3.25
5277 5936 5.180117 CAGAGACCAATTTGTTCAGTACCAG 59.820 44.000 0.00 0.00 0.00 4.00
5280 5939 5.707298 AGACCAATTTGTTCAGTACCAGATG 59.293 40.000 0.00 0.00 0.00 2.90
5281 5940 4.766891 ACCAATTTGTTCAGTACCAGATGG 59.233 41.667 0.00 0.00 42.17 3.51
5379 6052 1.601171 CCTGAAGAGGTCCTGGCAG 59.399 63.158 7.75 7.75 34.16 4.85
5382 6055 1.298014 GAAGAGGTCCTGGCAGTGG 59.702 63.158 14.43 0.00 0.00 4.00
5384 6057 3.325753 GAGGTCCTGGCAGTGGCT 61.326 66.667 18.53 0.00 40.87 4.75
5385 6058 3.618780 GAGGTCCTGGCAGTGGCTG 62.619 68.421 18.53 16.96 40.87 4.85
5443 6116 0.319125 GCCGCAGCTATCTCCTACAC 60.319 60.000 0.00 0.00 35.50 2.90
5485 6162 7.488471 CGGTCAGTATTAAGAAAGAACTGTAGG 59.512 40.741 0.00 0.00 38.88 3.18
5486 6163 8.529476 GGTCAGTATTAAGAAAGAACTGTAGGA 58.471 37.037 0.00 0.00 38.88 2.94
5487 6164 9.575783 GTCAGTATTAAGAAAGAACTGTAGGAG 57.424 37.037 0.00 0.00 38.88 3.69
5488 6165 9.310449 TCAGTATTAAGAAAGAACTGTAGGAGT 57.690 33.333 0.00 0.00 38.88 3.85
5501 6178 6.481954 ACTGTAGGAGTTTTATTTTCGCAG 57.518 37.500 0.00 0.00 0.00 5.18
5502 6179 5.995897 ACTGTAGGAGTTTTATTTTCGCAGT 59.004 36.000 0.00 0.00 0.00 4.40
5512 6189 1.593196 TTTTCGCAGTAGCAGCAAGT 58.407 45.000 0.00 0.00 42.27 3.16
5514 6191 0.033366 TTCGCAGTAGCAGCAAGTGA 59.967 50.000 0.00 0.00 42.27 3.41
5517 6194 0.514691 GCAGTAGCAGCAAGTGACAC 59.485 55.000 0.00 0.00 41.58 3.67
5518 6195 1.869774 CAGTAGCAGCAAGTGACACA 58.130 50.000 8.59 0.00 0.00 3.72
5520 6197 2.222678 CAGTAGCAGCAAGTGACACAAG 59.777 50.000 8.59 0.46 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.608308 TTCTCCTCGAAGCCGACAGA 60.608 55.000 0.00 0.00 40.30 3.41
1 2 0.243907 TTTCTCCTCGAAGCCGACAG 59.756 55.000 0.00 0.00 40.30 3.51
2 3 0.677288 TTTTCTCCTCGAAGCCGACA 59.323 50.000 0.00 0.00 40.30 4.35
3 4 1.792006 TTTTTCTCCTCGAAGCCGAC 58.208 50.000 0.00 0.00 40.30 4.79
29 30 4.736896 GCGGTCACGGTCCAGGAC 62.737 72.222 11.70 11.70 41.36 3.85
34 35 3.945304 AATTCGGCGGTCACGGTCC 62.945 63.158 7.21 0.00 41.36 4.46
35 36 2.433664 AATTCGGCGGTCACGGTC 60.434 61.111 7.21 0.00 41.36 4.79
36 37 1.597797 TAGAATTCGGCGGTCACGGT 61.598 55.000 7.21 0.00 41.36 4.83
37 38 0.458889 TTAGAATTCGGCGGTCACGG 60.459 55.000 7.21 0.00 41.36 4.94
38 39 1.352114 TTTAGAATTCGGCGGTCACG 58.648 50.000 7.21 0.00 44.63 4.35
39 40 3.434299 TCTTTTTAGAATTCGGCGGTCAC 59.566 43.478 7.21 0.00 0.00 3.67
40 41 3.666274 TCTTTTTAGAATTCGGCGGTCA 58.334 40.909 7.21 0.00 0.00 4.02
41 42 4.673534 TTCTTTTTAGAATTCGGCGGTC 57.326 40.909 7.21 2.24 0.00 4.79
42 43 5.441709 TTTTCTTTTTAGAATTCGGCGGT 57.558 34.783 7.21 0.00 0.00 5.68
43 44 6.090129 TGATTTTCTTTTTAGAATTCGGCGG 58.910 36.000 7.21 0.00 0.00 6.13
44 45 7.561237 TTGATTTTCTTTTTAGAATTCGGCG 57.439 32.000 0.00 0.00 0.00 6.46
52 53 8.967218 CGCAGTCATTTTGATTTTCTTTTTAGA 58.033 29.630 0.00 0.00 0.00 2.10
53 54 8.967218 TCGCAGTCATTTTGATTTTCTTTTTAG 58.033 29.630 0.00 0.00 0.00 1.85
54 55 8.864069 TCGCAGTCATTTTGATTTTCTTTTTA 57.136 26.923 0.00 0.00 0.00 1.52
55 56 7.769272 TCGCAGTCATTTTGATTTTCTTTTT 57.231 28.000 0.00 0.00 0.00 1.94
56 57 7.769272 TTCGCAGTCATTTTGATTTTCTTTT 57.231 28.000 0.00 0.00 0.00 2.27
57 58 7.769272 TTTCGCAGTCATTTTGATTTTCTTT 57.231 28.000 0.00 0.00 0.00 2.52
58 59 7.951530 ATTTCGCAGTCATTTTGATTTTCTT 57.048 28.000 0.00 0.00 0.00 2.52
59 60 7.116805 GGAATTTCGCAGTCATTTTGATTTTCT 59.883 33.333 0.00 0.00 0.00 2.52
60 61 7.095691 TGGAATTTCGCAGTCATTTTGATTTTC 60.096 33.333 0.00 0.00 0.00 2.29
61 62 6.705381 TGGAATTTCGCAGTCATTTTGATTTT 59.295 30.769 0.00 0.00 0.00 1.82
62 63 6.222389 TGGAATTTCGCAGTCATTTTGATTT 58.778 32.000 0.00 0.00 0.00 2.17
63 64 5.782047 TGGAATTTCGCAGTCATTTTGATT 58.218 33.333 0.00 0.00 0.00 2.57
64 65 5.389859 TGGAATTTCGCAGTCATTTTGAT 57.610 34.783 0.00 0.00 0.00 2.57
65 66 4.844998 TGGAATTTCGCAGTCATTTTGA 57.155 36.364 0.00 0.00 0.00 2.69
66 67 5.903764 TTTGGAATTTCGCAGTCATTTTG 57.096 34.783 0.00 0.00 0.00 2.44
67 68 6.018016 CCTTTTTGGAATTTCGCAGTCATTTT 60.018 34.615 0.00 0.00 38.35 1.82
68 69 5.466393 CCTTTTTGGAATTTCGCAGTCATTT 59.534 36.000 0.00 0.00 38.35 2.32
69 70 4.990426 CCTTTTTGGAATTTCGCAGTCATT 59.010 37.500 0.00 0.00 38.35 2.57
70 71 4.280677 TCCTTTTTGGAATTTCGCAGTCAT 59.719 37.500 0.00 0.00 42.94 3.06
71 72 3.634448 TCCTTTTTGGAATTTCGCAGTCA 59.366 39.130 0.00 0.00 42.94 3.41
72 73 4.237349 TCCTTTTTGGAATTTCGCAGTC 57.763 40.909 0.00 0.00 42.94 3.51
88 89 8.764287 CGCAGTCAAATTATTTTCTTTTCCTTT 58.236 29.630 0.00 0.00 0.00 3.11
89 90 8.141268 TCGCAGTCAAATTATTTTCTTTTCCTT 58.859 29.630 0.00 0.00 0.00 3.36
90 91 7.657336 TCGCAGTCAAATTATTTTCTTTTCCT 58.343 30.769 0.00 0.00 0.00 3.36
91 92 7.867445 TCGCAGTCAAATTATTTTCTTTTCC 57.133 32.000 0.00 0.00 0.00 3.13
95 96 8.925700 GGAATTTCGCAGTCAAATTATTTTCTT 58.074 29.630 0.00 0.00 34.30 2.52
96 97 7.273381 CGGAATTTCGCAGTCAAATTATTTTCT 59.727 33.333 0.00 0.00 34.30 2.52
97 98 7.383361 CGGAATTTCGCAGTCAAATTATTTTC 58.617 34.615 0.00 0.00 34.30 2.29
98 99 7.276953 CGGAATTTCGCAGTCAAATTATTTT 57.723 32.000 0.00 0.00 34.30 1.82
99 100 6.869421 CGGAATTTCGCAGTCAAATTATTT 57.131 33.333 0.00 0.00 34.30 1.40
125 126 2.424733 GGGGGTAGGTGCGACTCTC 61.425 68.421 0.00 0.00 0.00 3.20
126 127 2.363925 GGGGGTAGGTGCGACTCT 60.364 66.667 0.00 0.00 0.00 3.24
143 144 3.518552 TATAGTCCGGCCGGGGAGG 62.519 68.421 42.36 18.55 44.97 4.30
145 146 0.472352 ATTTATAGTCCGGCCGGGGA 60.472 55.000 42.36 27.79 36.01 4.81
146 147 1.206371 CTATTTATAGTCCGGCCGGGG 59.794 57.143 42.36 20.20 36.01 5.73
147 148 1.897802 ACTATTTATAGTCCGGCCGGG 59.102 52.381 42.36 24.55 39.27 5.73
151 152 2.614734 GGGCCACTATTTATAGTCCGGC 60.615 54.545 16.97 16.97 45.00 6.13
152 153 2.904434 AGGGCCACTATTTATAGTCCGG 59.096 50.000 6.18 0.00 41.44 5.14
153 154 3.056035 GGAGGGCCACTATTTATAGTCCG 60.056 52.174 6.18 0.00 41.44 4.79
182 183 0.744281 GAGGAGAGAAGAGAAGGGCG 59.256 60.000 0.00 0.00 0.00 6.13
188 189 3.668141 ATGCAGAGAGGAGAGAAGAGA 57.332 47.619 0.00 0.00 0.00 3.10
278 280 4.271816 CGAGCACGGGGAGGATCG 62.272 72.222 0.00 0.00 33.41 3.69
318 325 1.751927 GGACGAGAGGGCCTTACGA 60.752 63.158 29.64 0.00 0.00 3.43
319 326 2.783288 GGGACGAGAGGGCCTTACG 61.783 68.421 24.20 24.20 0.00 3.18
320 327 2.433146 GGGGACGAGAGGGCCTTAC 61.433 68.421 7.89 3.97 0.00 2.34
321 328 2.042230 GGGGACGAGAGGGCCTTA 60.042 66.667 7.89 0.00 0.00 2.69
414 421 4.504916 CGAGGAGCAGCTGGACGG 62.505 72.222 17.12 0.00 0.00 4.79
669 678 0.539051 TAGGCCAAGCTTCTCTGCTC 59.461 55.000 5.01 0.00 43.24 4.26
670 679 1.211456 ATAGGCCAAGCTTCTCTGCT 58.789 50.000 5.01 0.00 46.40 4.24
710 719 2.046892 CGGTGTGAGGGCTTCCAG 60.047 66.667 0.00 0.00 0.00 3.86
717 726 1.395826 GGAGATCTCCGGTGTGAGGG 61.396 65.000 25.78 0.00 40.36 4.30
741 750 2.202676 CGGCGTCTCTCCTCTTGC 60.203 66.667 0.00 0.00 0.00 4.01
798 807 8.703336 CAAGCAAAACTAAAATTTAGAGGAAGC 58.297 33.333 18.55 14.02 0.00 3.86
806 815 5.692654 GGACGGCAAGCAAAACTAAAATTTA 59.307 36.000 0.00 0.00 0.00 1.40
807 816 4.509970 GGACGGCAAGCAAAACTAAAATTT 59.490 37.500 0.00 0.00 0.00 1.82
808 817 4.055360 GGACGGCAAGCAAAACTAAAATT 58.945 39.130 0.00 0.00 0.00 1.82
809 818 3.068873 TGGACGGCAAGCAAAACTAAAAT 59.931 39.130 0.00 0.00 0.00 1.82
810 819 2.427453 TGGACGGCAAGCAAAACTAAAA 59.573 40.909 0.00 0.00 0.00 1.52
811 820 2.025155 TGGACGGCAAGCAAAACTAAA 58.975 42.857 0.00 0.00 0.00 1.85
813 822 1.234821 CTGGACGGCAAGCAAAACTA 58.765 50.000 0.00 0.00 0.00 2.24
814 823 0.751643 ACTGGACGGCAAGCAAAACT 60.752 50.000 0.00 0.00 0.00 2.66
815 824 0.594796 CACTGGACGGCAAGCAAAAC 60.595 55.000 0.00 0.00 0.00 2.43
848 878 8.517878 CATTTCACAATAGGAAACTTGATCAGT 58.482 33.333 0.00 0.00 43.67 3.41
862 892 5.939883 TCCTGAACCTGACATTTCACAATAG 59.060 40.000 0.00 0.00 0.00 1.73
931 973 9.120538 TCACAATTGTTAGATCCTTAAATAGCC 57.879 33.333 8.77 0.00 0.00 3.93
944 986 4.838423 TCCCAGTCTCTCACAATTGTTAGA 59.162 41.667 18.90 18.90 0.00 2.10
946 988 5.071788 AGTTCCCAGTCTCTCACAATTGTTA 59.928 40.000 8.77 0.00 0.00 2.41
948 990 3.392616 AGTTCCCAGTCTCTCACAATTGT 59.607 43.478 4.92 4.92 0.00 2.71
981 1023 0.390603 TCGCAATAACACCACCCTCG 60.391 55.000 0.00 0.00 0.00 4.63
998 1040 0.956633 CCCATTCTGATTGCCCATCG 59.043 55.000 0.00 0.00 34.08 3.84
1005 1047 0.466189 CGGGGGTCCCATTCTGATTG 60.466 60.000 10.98 0.00 45.83 2.67
1068 1110 1.072173 TCAATCCCATCGGCATACCTG 59.928 52.381 0.00 0.00 0.00 4.00
1239 1281 1.625818 AGCTTCCGGCCAAGGATATAG 59.374 52.381 2.24 0.00 43.05 1.31
1281 1323 0.036105 TCTCGGTGCAGAGGTACGTA 60.036 55.000 3.36 0.00 38.71 3.57
1389 1431 3.627123 CCGACAAATGGTGCATTATCTGA 59.373 43.478 0.00 0.00 32.43 3.27
1500 1542 3.089284 GTTCCCCTGAATTCGGTCAAAT 58.911 45.455 13.23 0.00 31.98 2.32
1521 1563 0.172578 TCATCTCACTGTAACGCCCG 59.827 55.000 0.00 0.00 0.00 6.13
1690 1732 4.696479 CCATACCTGGCTTGAAGTAGAT 57.304 45.455 0.00 0.00 35.23 1.98
1818 1860 4.093408 CAGGAATGTAACTGAATGTGTCCG 59.907 45.833 0.00 0.00 0.00 4.79
1855 1897 4.457834 AGTGGCGGCTTGTATATAGATC 57.542 45.455 11.43 0.00 0.00 2.75
1859 1901 4.409718 TTGAAGTGGCGGCTTGTATATA 57.590 40.909 11.43 0.00 0.00 0.86
1860 1902 3.275617 TTGAAGTGGCGGCTTGTATAT 57.724 42.857 11.43 0.00 0.00 0.86
1892 1934 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
1893 1935 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
1894 1936 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
1895 1937 9.454859 AGAAAGACAAATATTTAGGAACAGAGG 57.545 33.333 0.00 0.00 0.00 3.69
1922 1964 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
1923 1965 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
1924 1966 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
1925 1967 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
1926 1968 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
1927 1969 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
1928 1970 7.704899 CACATCCGTATGTAGTAGTCATTTGAA 59.295 37.037 0.00 0.00 44.70 2.69
1929 1971 7.147966 ACACATCCGTATGTAGTAGTCATTTGA 60.148 37.037 0.00 0.00 44.70 2.69
1930 1972 6.978659 ACACATCCGTATGTAGTAGTCATTTG 59.021 38.462 0.00 0.00 44.70 2.32
1931 1973 6.978659 CACACATCCGTATGTAGTAGTCATTT 59.021 38.462 0.00 0.00 44.70 2.32
1932 1974 6.096423 ACACACATCCGTATGTAGTAGTCATT 59.904 38.462 0.00 0.00 44.70 2.57
1933 1975 5.593095 ACACACATCCGTATGTAGTAGTCAT 59.407 40.000 0.00 0.00 44.70 3.06
1934 1976 4.945543 ACACACATCCGTATGTAGTAGTCA 59.054 41.667 0.00 0.00 44.70 3.41
1935 1977 5.496133 ACACACATCCGTATGTAGTAGTC 57.504 43.478 0.00 0.00 44.70 2.59
1936 1978 6.259608 GTCTACACACATCCGTATGTAGTAGT 59.740 42.308 21.47 10.39 44.70 2.73
1937 1979 6.259387 TGTCTACACACATCCGTATGTAGTAG 59.741 42.308 18.70 18.70 44.70 2.57
1938 1980 6.114767 TGTCTACACACATCCGTATGTAGTA 58.885 40.000 10.01 0.00 44.70 1.82
1939 1981 4.945543 TGTCTACACACATCCGTATGTAGT 59.054 41.667 10.01 0.00 44.70 2.73
1940 1982 5.494632 TGTCTACACACATCCGTATGTAG 57.505 43.478 4.97 4.97 44.70 2.74
1941 1983 7.754851 ATATGTCTACACACATCCGTATGTA 57.245 36.000 0.00 0.00 44.70 2.29
1943 1985 7.946655 AAATATGTCTACACACATCCGTATG 57.053 36.000 0.00 0.00 38.07 2.39
1945 1987 9.872721 TTTAAAATATGTCTACACACATCCGTA 57.127 29.630 0.00 0.00 38.07 4.02
1946 1988 8.780846 TTTAAAATATGTCTACACACATCCGT 57.219 30.769 0.00 0.00 38.07 4.69
1947 1989 8.879759 ACTTTAAAATATGTCTACACACATCCG 58.120 33.333 0.00 0.00 38.07 4.18
1948 1990 9.988350 CACTTTAAAATATGTCTACACACATCC 57.012 33.333 0.00 0.00 38.07 3.51
1972 2014 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1973 2015 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1974 2016 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1975 2017 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1976 2018 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1977 2019 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1978 2020 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1979 2021 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1980 2022 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1981 2023 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1982 2024 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1983 2025 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
1984 2026 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
1985 2027 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
1986 2028 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
1987 2029 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
1988 2030 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
1989 2031 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
1990 2032 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
1991 2033 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
1992 2034 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1993 2035 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1994 2036 6.367695 TCATTTCAACAAGTGACTACATACGG 59.632 38.462 0.00 0.00 35.39 4.02
1995 2037 7.227461 GTCATTTCAACAAGTGACTACATACG 58.773 38.462 3.77 0.00 42.95 3.06
2003 2045 8.064814 GTCTTTCTAGTCATTTCAACAAGTGAC 58.935 37.037 2.95 2.95 45.33 3.67
2004 2046 7.768582 TGTCTTTCTAGTCATTTCAACAAGTGA 59.231 33.333 0.00 0.00 0.00 3.41
2005 2047 7.919690 TGTCTTTCTAGTCATTTCAACAAGTG 58.080 34.615 0.00 0.00 0.00 3.16
2006 2048 8.506168 TTGTCTTTCTAGTCATTTCAACAAGT 57.494 30.769 0.00 0.00 0.00 3.16
2007 2049 8.616076 ACTTGTCTTTCTAGTCATTTCAACAAG 58.384 33.333 0.00 0.00 43.26 3.16
2008 2050 8.506168 ACTTGTCTTTCTAGTCATTTCAACAA 57.494 30.769 0.00 0.00 0.00 2.83
2009 2051 9.778741 ATACTTGTCTTTCTAGTCATTTCAACA 57.221 29.630 0.00 0.00 34.37 3.33
2017 2059 9.924650 GTTCCTAAATACTTGTCTTTCTAGTCA 57.075 33.333 0.00 0.00 34.37 3.41
2018 2060 9.074443 CGTTCCTAAATACTTGTCTTTCTAGTC 57.926 37.037 0.00 0.00 34.37 2.59
2019 2061 8.033626 CCGTTCCTAAATACTTGTCTTTCTAGT 58.966 37.037 0.00 0.00 36.28 2.57
2020 2062 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
2021 2063 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2022 2064 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2023 2065 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2024 2066 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2025 2067 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2026 2068 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2027 2069 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2028 2070 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2029 2071 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2030 2072 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2031 2073 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2032 2074 4.892345 ACTACTCCCTCCGTTCCTAAATAC 59.108 45.833 0.00 0.00 0.00 1.89
2033 2075 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2034 2076 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2035 2077 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2036 2078 4.803329 ATACTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
2037 2079 7.017551 TGTTATATACTACTCCCTCCGTTCCTA 59.982 40.741 0.00 0.00 0.00 2.94
2038 2080 6.183361 TGTTATATACTACTCCCTCCGTTCCT 60.183 42.308 0.00 0.00 0.00 3.36
2039 2081 6.006449 TGTTATATACTACTCCCTCCGTTCC 58.994 44.000 0.00 0.00 0.00 3.62
2040 2082 7.516198 TTGTTATATACTACTCCCTCCGTTC 57.484 40.000 0.00 0.00 0.00 3.95
2041 2083 7.902920 TTTGTTATATACTACTCCCTCCGTT 57.097 36.000 0.00 0.00 0.00 4.44
2042 2084 7.902920 TTTTGTTATATACTACTCCCTCCGT 57.097 36.000 0.00 0.00 0.00 4.69
2043 2085 7.817962 CCATTTTGTTATATACTACTCCCTCCG 59.182 40.741 0.00 0.00 0.00 4.63
2044 2086 7.606839 GCCATTTTGTTATATACTACTCCCTCC 59.393 40.741 0.00 0.00 0.00 4.30
2045 2087 7.606839 GGCCATTTTGTTATATACTACTCCCTC 59.393 40.741 0.00 0.00 0.00 4.30
2046 2088 7.294958 AGGCCATTTTGTTATATACTACTCCCT 59.705 37.037 5.01 0.00 0.00 4.20
2047 2089 7.390718 CAGGCCATTTTGTTATATACTACTCCC 59.609 40.741 5.01 0.00 0.00 4.30
2048 2090 8.154856 TCAGGCCATTTTGTTATATACTACTCC 58.845 37.037 5.01 0.00 0.00 3.85
2049 2091 9.555727 TTCAGGCCATTTTGTTATATACTACTC 57.444 33.333 5.01 0.00 0.00 2.59
2052 2094 9.860650 ACATTCAGGCCATTTTGTTATATACTA 57.139 29.630 5.01 0.00 0.00 1.82
2053 2095 8.766994 ACATTCAGGCCATTTTGTTATATACT 57.233 30.769 5.01 0.00 0.00 2.12
2064 2106 4.832266 TGTTAGTCAACATTCAGGCCATTT 59.168 37.500 5.01 0.00 39.75 2.32
2065 2107 4.406456 TGTTAGTCAACATTCAGGCCATT 58.594 39.130 5.01 0.00 39.75 3.16
2142 2189 4.080356 TGCCTCATCCTTGTAATAAGCAGT 60.080 41.667 0.00 0.00 0.00 4.40
2154 2201 6.363167 TTCATTTCAATTTGCCTCATCCTT 57.637 33.333 0.00 0.00 0.00 3.36
2385 2435 0.392193 CTCCAGCTGACCACACATCC 60.392 60.000 17.39 0.00 0.00 3.51
2468 2518 7.964604 AGACAGTAGACTCAAATTTAACACC 57.035 36.000 0.00 0.00 0.00 4.16
2525 2575 8.839310 AATATGCCTTTCTGTGTATCTGATAC 57.161 34.615 18.64 18.64 36.29 2.24
2593 2643 4.798924 GCACTGTCAGATATCTTAGGCCAG 60.799 50.000 5.01 7.29 0.00 4.85
2723 2773 7.540299 AGGAAAATGTTTGTGACGACTAAAAA 58.460 30.769 0.00 0.00 0.00 1.94
2731 2781 6.750039 AGTACAAAAGGAAAATGTTTGTGACG 59.250 34.615 10.43 0.00 43.43 4.35
2821 2871 4.993705 AACACTAGGATCCAAAACTCCA 57.006 40.909 15.82 0.00 33.75 3.86
2997 3050 0.691332 AGAGCCATGATCCATGCGAT 59.309 50.000 0.00 0.00 40.20 4.58
3000 3053 1.688772 AACAGAGCCATGATCCATGC 58.311 50.000 0.00 0.00 40.20 4.06
3052 3105 5.932619 TCACAGTAACTATGTATGTGCCT 57.067 39.130 0.00 0.00 40.76 4.75
3121 3174 3.367087 GCATGGCAGCAATAGAATCCATC 60.367 47.826 0.00 0.00 32.48 3.51
3247 3303 9.603921 ATGAAACAAATTAAATTCCAGCATAGG 57.396 29.630 0.00 0.00 0.00 2.57
3332 3398 4.349048 TCAGCTATCACCTGGAAGCATATT 59.651 41.667 0.00 0.00 34.28 1.28
3538 3604 3.009723 CACACATATTGGACGAGCCTTT 58.990 45.455 0.00 0.00 37.63 3.11
3660 3728 8.152246 TGTCATCACAGCAATGATATCTATTGA 58.848 33.333 21.84 9.58 37.20 2.57
3698 3766 6.508777 ACAGCTTAGGCGTTTTTCATTAAAA 58.491 32.000 0.00 0.00 44.37 1.52
3702 3770 4.517453 TGTACAGCTTAGGCGTTTTTCATT 59.483 37.500 0.00 0.00 44.37 2.57
3703 3771 4.069304 TGTACAGCTTAGGCGTTTTTCAT 58.931 39.130 0.00 0.00 44.37 2.57
3711 3781 7.591795 GCATACTATATATGTACAGCTTAGGCG 59.408 40.741 0.33 0.00 44.37 5.52
4012 4084 2.317371 TCTCTTCAAGGAGAGTGCCT 57.683 50.000 5.33 0.00 42.96 4.75
4075 4147 6.014647 ACAGGCATGCCATGATATTTTAGAT 58.985 36.000 37.18 9.60 38.92 1.98
4126 4201 4.963318 ACAGGTTCTTCATGAGTCAGAA 57.037 40.909 4.53 4.53 0.00 3.02
4131 4206 5.552870 AGTGTTACAGGTTCTTCATGAGT 57.447 39.130 0.00 0.00 0.00 3.41
4143 4218 1.455786 CTGTCGCGAAAGTGTTACAGG 59.544 52.381 18.49 0.00 40.61 4.00
4162 4237 1.472480 ACACTTTTGCGACTGTTTGCT 59.528 42.857 7.36 0.00 32.59 3.91
4163 4238 1.908065 ACACTTTTGCGACTGTTTGC 58.092 45.000 0.00 0.00 0.00 3.68
4166 4241 2.032924 GCCTAACACTTTTGCGACTGTT 59.967 45.455 0.00 0.00 0.00 3.16
4167 4242 1.602377 GCCTAACACTTTTGCGACTGT 59.398 47.619 0.00 0.00 0.00 3.55
4168 4243 1.601903 TGCCTAACACTTTTGCGACTG 59.398 47.619 0.00 0.00 0.00 3.51
4170 4245 2.989422 ATGCCTAACACTTTTGCGAC 57.011 45.000 0.00 0.00 0.00 5.19
4171 4246 5.637006 AAATATGCCTAACACTTTTGCGA 57.363 34.783 0.00 0.00 0.00 5.10
4172 4247 6.551736 ACTAAATATGCCTAACACTTTTGCG 58.448 36.000 0.00 0.00 0.00 4.85
4173 4248 7.535139 TGACTAAATATGCCTAACACTTTTGC 58.465 34.615 0.00 0.00 0.00 3.68
4184 4259 9.632638 ACATGTCTAAATTGACTAAATATGCCT 57.367 29.630 0.00 0.00 37.79 4.75
4211 4286 4.666512 AGATGCAAGTCCCAAAACACTAT 58.333 39.130 0.00 0.00 0.00 2.12
4220 4295 3.620488 GGTATCAAAGATGCAAGTCCCA 58.380 45.455 0.00 0.00 0.00 4.37
4242 4317 1.398390 GAATTAAGACCCGCTGCAGTG 59.602 52.381 20.56 20.56 0.00 3.66
4346 4421 3.715628 TTTTCCTTTGAGCTGTTGAGC 57.284 42.857 0.00 0.00 46.64 4.26
4407 4482 9.046296 CAGATACCAAAGTCTGTATTGTAATCC 57.954 37.037 0.00 0.00 37.62 3.01
4414 4489 9.060347 CATTATGCAGATACCAAAGTCTGTATT 57.940 33.333 10.38 0.00 42.58 1.89
4486 4565 7.042051 GCTAAGATCACTGTTACAAAGTTGACA 60.042 37.037 0.00 0.00 0.00 3.58
4487 4566 7.171678 AGCTAAGATCACTGTTACAAAGTTGAC 59.828 37.037 0.00 0.00 0.00 3.18
4500 4579 9.800433 CATAGTATTATCCAGCTAAGATCACTG 57.200 37.037 1.82 0.00 0.00 3.66
4536 4615 6.054860 AGGTCATGCTGAAAGTAACACTAT 57.945 37.500 0.00 0.00 35.30 2.12
4680 5130 4.648762 CCAAGTCCAATATTGCCACCATTA 59.351 41.667 10.11 0.00 0.00 1.90
4683 5133 2.042297 TCCAAGTCCAATATTGCCACCA 59.958 45.455 10.11 0.00 0.00 4.17
4844 5294 3.878160 AGAATCGACCTGTTCTCTTCC 57.122 47.619 0.00 0.00 28.93 3.46
4938 5388 7.069578 ACCAGGACACAACTACTTACTATATGG 59.930 40.741 0.00 0.00 0.00 2.74
5020 5472 3.917985 ACACAAAGAACAAACGAACTTGC 59.082 39.130 0.00 0.00 0.00 4.01
5055 5507 8.739972 AGACAAGTTTTTCATTAGACACAAAGT 58.260 29.630 0.00 0.00 0.00 2.66
5211 5870 4.007644 GCCAGCCCTTTGTTGCCC 62.008 66.667 0.00 0.00 0.00 5.36
5212 5871 3.233231 TGCCAGCCCTTTGTTGCC 61.233 61.111 0.00 0.00 0.00 4.52
5213 5872 2.029518 GTGCCAGCCCTTTGTTGC 59.970 61.111 0.00 0.00 0.00 4.17
5214 5873 1.067916 GTGTGCCAGCCCTTTGTTG 59.932 57.895 0.00 0.00 0.00 3.33
5215 5874 2.133641 GGTGTGCCAGCCCTTTGTT 61.134 57.895 0.00 0.00 34.09 2.83
5216 5875 2.521708 GGTGTGCCAGCCCTTTGT 60.522 61.111 0.00 0.00 34.09 2.83
5232 5891 3.243805 TGCAAAATCATGAACTGGTGTGG 60.244 43.478 0.00 0.00 0.00 4.17
5269 5928 4.769688 TGTAAATCTGCCATCTGGTACTG 58.230 43.478 0.00 0.00 37.57 2.74
5274 5933 5.614308 TCATACTGTAAATCTGCCATCTGG 58.386 41.667 0.00 0.00 38.53 3.86
5275 5934 6.286758 ACTCATACTGTAAATCTGCCATCTG 58.713 40.000 0.00 0.00 0.00 2.90
5276 5935 6.491714 ACTCATACTGTAAATCTGCCATCT 57.508 37.500 0.00 0.00 0.00 2.90
5277 5936 7.332926 CCATACTCATACTGTAAATCTGCCATC 59.667 40.741 0.00 0.00 0.00 3.51
5280 5939 5.409826 GCCATACTCATACTGTAAATCTGCC 59.590 44.000 0.00 0.00 0.00 4.85
5281 5940 6.226787 AGCCATACTCATACTGTAAATCTGC 58.773 40.000 0.00 0.00 0.00 4.26
5387 6060 4.767255 GAGGCCACCTGACCTGCG 62.767 72.222 5.01 0.00 36.05 5.18
5388 6061 4.416738 GGAGGCCACCTGACCTGC 62.417 72.222 12.67 0.00 36.05 4.85
5426 6099 1.598183 CGTGTGTAGGAGATAGCTGCG 60.598 57.143 0.00 0.00 37.57 5.18
5460 6133 8.529476 TCCTACAGTTCTTTCTTAATACTGACC 58.471 37.037 0.00 0.00 38.74 4.02
5485 6162 4.788609 GCTGCTACTGCGAAAATAAAACTC 59.211 41.667 0.00 0.00 43.34 3.01
5486 6163 4.215399 TGCTGCTACTGCGAAAATAAAACT 59.785 37.500 0.00 0.00 43.34 2.66
5487 6164 4.472286 TGCTGCTACTGCGAAAATAAAAC 58.528 39.130 0.00 0.00 43.34 2.43
5488 6165 4.757799 TGCTGCTACTGCGAAAATAAAA 57.242 36.364 0.00 0.00 43.34 1.52
5490 6167 3.751175 ACTTGCTGCTACTGCGAAAATAA 59.249 39.130 0.00 0.00 43.34 1.40
5497 6174 0.945743 TGTCACTTGCTGCTACTGCG 60.946 55.000 0.00 0.00 43.34 5.18
5501 6178 2.213499 ACTTGTGTCACTTGCTGCTAC 58.787 47.619 4.27 0.00 0.00 3.58
5502 6179 2.620251 ACTTGTGTCACTTGCTGCTA 57.380 45.000 4.27 0.00 0.00 3.49
5544 6222 2.358369 TCGACGTGCGTCCTCTCT 60.358 61.111 17.47 0.00 41.76 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.