Multiple sequence alignment - TraesCS5A01G489500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G489500 chr5A 100.000 3027 0 0 2873 5899 659340451 659337425 0.000000e+00 5590.0
1 TraesCS5A01G489500 chr5A 97.206 3042 67 6 2873 5899 709195244 709198282 0.000000e+00 5131.0
2 TraesCS5A01G489500 chr5A 100.000 2681 0 0 1 2681 659343323 659340643 0.000000e+00 4951.0
3 TraesCS5A01G489500 chr5A 97.459 1928 24 11 774 2681 709192980 709194902 0.000000e+00 3265.0
4 TraesCS5A01G489500 chr5A 90.468 598 33 17 197 790 709192160 709192737 0.000000e+00 767.0
5 TraesCS5A01G489500 chr5A 88.235 119 3 3 32 150 709211991 709212098 1.330000e-26 132.0
6 TraesCS5A01G489500 chr5A 90.909 55 4 1 3280 3333 709611150 709611096 8.200000e-09 73.1
7 TraesCS5A01G489500 chr4B 88.415 1968 195 14 3621 5570 671697560 671699512 0.000000e+00 2340.0
8 TraesCS5A01G489500 chr4B 84.194 1607 233 14 3335 4929 671706357 671707954 0.000000e+00 1541.0
9 TraesCS5A01G489500 chr4B 90.805 696 45 14 1996 2681 671695887 671696573 0.000000e+00 913.0
10 TraesCS5A01G489500 chr4B 82.948 909 98 26 674 1565 671703288 671704156 0.000000e+00 767.0
11 TraesCS5A01G489500 chr4B 84.548 686 60 23 2873 3520 671696637 671697314 6.450000e-179 638.0
12 TraesCS5A01G489500 chr4B 84.279 687 64 22 1994 2660 671705270 671705932 1.080000e-176 630.0
13 TraesCS5A01G489500 chr4B 92.623 366 23 1 1201 1566 671694536 671694897 1.880000e-144 523.0
14 TraesCS5A01G489500 chr4B 84.795 513 21 15 10 521 671693622 671694078 4.160000e-126 462.0
15 TraesCS5A01G489500 chr4B 88.052 385 27 8 16 400 671702540 671702905 7.020000e-119 438.0
16 TraesCS5A01G489500 chr4B 91.532 248 13 6 928 1170 671694294 671694538 9.470000e-88 335.0
17 TraesCS5A01G489500 chr4B 89.474 190 6 6 744 930 671694088 671694266 1.650000e-55 228.0
18 TraesCS5A01G489500 chr4B 86.207 145 12 5 990 1130 671776139 671775999 3.680000e-32 150.0
19 TraesCS5A01G489500 chr4B 90.654 107 7 2 534 637 671703196 671703302 7.970000e-29 139.0
20 TraesCS5A01G489500 chr4B 85.047 107 5 4 65 165 671708982 671709083 1.350000e-16 99.0
21 TraesCS5A01G489500 chrUn 84.816 1607 220 19 3335 4929 28299696 28298102 0.000000e+00 1594.0
22 TraesCS5A01G489500 chrUn 82.958 933 87 37 674 1579 28302892 28302005 0.000000e+00 776.0
23 TraesCS5A01G489500 chrUn 83.721 688 67 25 1994 2660 28300900 28300237 5.050000e-170 608.0
24 TraesCS5A01G489500 chrUn 84.654 593 33 16 80 639 28303443 28302876 6.730000e-149 538.0
25 TraesCS5A01G489500 chrUn 87.429 175 9 6 975 1136 100234002 100234176 7.800000e-44 189.0
26 TraesCS5A01G489500 chrUn 81.818 220 13 12 66 270 28293973 28293766 6.120000e-35 159.0
27 TraesCS5A01G489500 chrUn 89.091 55 5 1 3280 3333 28955525 28955471 3.820000e-07 67.6
28 TraesCS5A01G489500 chr2D 83.153 926 89 32 674 1579 639535384 639534506 0.000000e+00 784.0
29 TraesCS5A01G489500 chr2D 83.261 687 70 24 1994 2660 639533233 639532572 1.830000e-164 590.0
30 TraesCS5A01G489500 chr2D 83.359 655 46 14 16 642 639535984 639535365 1.120000e-151 547.0
31 TraesCS5A01G489500 chr2D 82.166 157 19 4 66 217 639528432 639528280 6.210000e-25 126.0
32 TraesCS5A01G489500 chr4D 72.909 1351 276 57 3587 4888 381558467 381559776 9.270000e-103 385.0
33 TraesCS5A01G489500 chr4D 73.872 643 116 28 5285 5899 481411661 481412279 5.990000e-50 209.0
34 TraesCS5A01G489500 chr4D 85.211 142 13 4 985 1125 490888638 490888772 7.970000e-29 139.0
35 TraesCS5A01G489500 chr4D 76.471 255 55 4 5642 5895 46305177 46305427 3.710000e-27 134.0
36 TraesCS5A01G489500 chr4D 84.298 121 11 4 1877 1990 335890623 335890742 1.740000e-20 111.0
37 TraesCS5A01G489500 chr6A 74.889 673 131 27 5255 5899 473355067 473354405 7.530000e-69 272.0
38 TraesCS5A01G489500 chr6A 83.721 129 12 5 1877 1996 595172322 595172450 4.830000e-21 113.0
39 TraesCS5A01G489500 chr6A 87.931 58 5 2 3268 3324 115279284 115279340 3.820000e-07 67.6
40 TraesCS5A01G489500 chr7A 77.233 347 58 16 5256 5589 70891372 70891710 3.630000e-42 183.0
41 TraesCS5A01G489500 chr7D 84.677 124 11 4 1877 1992 83344887 83345010 3.740000e-22 117.0
42 TraesCS5A01G489500 chr7D 83.740 123 13 3 1877 1992 454079371 454079249 6.250000e-20 110.0
43 TraesCS5A01G489500 chr3D 85.000 120 11 3 1877 1989 566956790 566956909 1.340000e-21 115.0
44 TraesCS5A01G489500 chr3D 100.000 29 0 0 3471 3499 554700771 554700799 3.000000e-03 54.7
45 TraesCS5A01G489500 chr2B 84.677 124 10 8 1877 1992 679901900 679902022 1.340000e-21 115.0
46 TraesCS5A01G489500 chr2B 97.297 37 1 0 5132 5168 356304888 356304852 4.940000e-06 63.9
47 TraesCS5A01G489500 chr2B 94.595 37 2 0 5132 5168 356257815 356257779 2.300000e-04 58.4
48 TraesCS5A01G489500 chr1B 84.553 123 12 3 1877 1992 334894542 334894664 1.340000e-21 115.0
49 TraesCS5A01G489500 chr1B 90.476 63 4 2 3280 3341 522012338 522012277 1.360000e-11 82.4
50 TraesCS5A01G489500 chr6B 82.812 128 12 5 1877 1996 422321274 422321149 8.090000e-19 106.0
51 TraesCS5A01G489500 chr6B 90.385 52 5 0 3279 3330 112909185 112909134 1.060000e-07 69.4
52 TraesCS5A01G489500 chr6B 79.348 92 16 3 5806 5896 632951530 632951441 1.780000e-05 62.1
53 TraesCS5A01G489500 chr1D 90.476 63 4 2 3280 3341 388640493 388640432 1.360000e-11 82.4
54 TraesCS5A01G489500 chr1A 90.476 63 4 2 3280 3341 487730701 487730640 1.360000e-11 82.4
55 TraesCS5A01G489500 chr5D 90.741 54 3 2 5127 5179 399848852 399848800 2.950000e-08 71.3
56 TraesCS5A01G489500 chr7B 84.058 69 10 1 3262 3330 684471669 684471736 1.370000e-06 65.8
57 TraesCS5A01G489500 chr6D 97.222 36 1 0 5861 5896 419916893 419916858 1.780000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G489500 chr5A 659337425 659343323 5898 True 5270.500000 5590 100.000000 1 5899 2 chr5A.!!$R2 5898
1 TraesCS5A01G489500 chr5A 709192160 709198282 6122 False 3054.333333 5131 95.044333 197 5899 3 chr5A.!!$F2 5702
2 TraesCS5A01G489500 chr4B 671693622 671709083 15461 False 696.384615 2340 87.489692 10 5570 13 chr4B.!!$F1 5560
3 TraesCS5A01G489500 chrUn 28298102 28303443 5341 True 879.000000 1594 84.037250 80 4929 4 chrUn.!!$R3 4849
4 TraesCS5A01G489500 chr2D 639532572 639535984 3412 True 640.333333 784 83.257667 16 2660 3 chr2D.!!$R2 2644
5 TraesCS5A01G489500 chr4D 381558467 381559776 1309 False 385.000000 385 72.909000 3587 4888 1 chr4D.!!$F3 1301
6 TraesCS5A01G489500 chr4D 481411661 481412279 618 False 209.000000 209 73.872000 5285 5899 1 chr4D.!!$F4 614
7 TraesCS5A01G489500 chr6A 473354405 473355067 662 True 272.000000 272 74.889000 5255 5899 1 chr6A.!!$R1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.031314 TGGTGGCGTACGTCGTAAAA 59.969 50.000 16.05 0.00 42.13 1.52 F
104 105 0.040067 GACAGCAAGGCTTTCCGTTG 60.040 55.000 0.00 0.00 36.40 4.10 F
107 108 0.755327 AGCAAGGCTTTCCGTTGGTT 60.755 50.000 0.00 0.00 33.89 3.67 F
859 1173 0.797542 CTTCTTGCTCTGCAGTCTGC 59.202 55.000 18.32 18.32 45.29 4.26 F
1785 2842 4.165779 CGACATGCTGTAAATTTTGGACC 58.834 43.478 0.00 0.00 0.00 4.46 F
2954 4947 2.754002 AGACTCCTTCGTAAGTGTAGCC 59.246 50.000 0.00 0.00 39.48 3.93 F
3828 6225 2.416547 CGTCAACCTTGATCATGTCACC 59.583 50.000 0.00 0.00 39.73 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1044 1444 0.615850 GGTAGCTCAACTGCTTCCCT 59.384 55.000 0.0 0.0 42.36 4.20 R
1979 3767 1.275573 AGTAAGTGCTCCCTCCGTTTC 59.724 52.381 0.0 0.0 0.00 2.78 R
1984 3772 4.465305 TGTAACTAAGTAAGTGCTCCCTCC 59.535 45.833 0.0 0.0 38.88 4.30 R
2379 4206 2.094675 CAAATCCAATGTCCCGAGCTT 58.905 47.619 0.0 0.0 0.00 3.74 R
3614 5868 0.478072 TGTGCCAATCTGGTTCACCT 59.522 50.000 0.0 0.0 40.46 4.00 R
4005 6402 0.810031 CCGTAAAGCAGGATGGACGG 60.810 60.000 0.0 0.0 43.27 4.79 R
5630 17189 1.120530 ACTAATCTACCCCACTGCCG 58.879 55.000 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 0.535335 GATTCTCACCTGGTGGCGTA 59.465 55.000 25.67 11.92 36.63 4.42
55 56 0.249398 ATTCTCACCTGGTGGCGTAC 59.751 55.000 25.67 0.00 36.63 3.67
56 57 2.126071 CTCACCTGGTGGCGTACG 60.126 66.667 25.67 11.84 36.63 3.67
57 58 2.913578 TCACCTGGTGGCGTACGT 60.914 61.111 25.67 0.00 36.63 3.57
58 59 2.431942 CACCTGGTGGCGTACGTC 60.432 66.667 19.23 14.12 36.63 4.34
59 60 4.047059 ACCTGGTGGCGTACGTCG 62.047 66.667 16.05 2.55 43.12 5.12
60 61 4.047059 CCTGGTGGCGTACGTCGT 62.047 66.667 16.05 2.21 42.13 4.34
61 62 2.689785 CCTGGTGGCGTACGTCGTA 61.690 63.158 16.05 0.00 42.13 3.43
62 63 1.209898 CTGGTGGCGTACGTCGTAA 59.790 57.895 16.05 1.59 42.13 3.18
63 64 0.387112 CTGGTGGCGTACGTCGTAAA 60.387 55.000 16.05 0.00 42.13 2.01
64 65 0.031314 TGGTGGCGTACGTCGTAAAA 59.969 50.000 16.05 0.00 42.13 1.52
96 97 3.189568 TGTTGTTGACAGCAAGGCT 57.810 47.368 4.82 0.00 40.77 4.58
104 105 0.040067 GACAGCAAGGCTTTCCGTTG 60.040 55.000 0.00 0.00 36.40 4.10
105 106 1.286880 CAGCAAGGCTTTCCGTTGG 59.713 57.895 0.00 0.00 36.40 3.77
106 107 1.152756 AGCAAGGCTTTCCGTTGGT 60.153 52.632 0.00 0.00 33.89 3.67
107 108 0.755327 AGCAAGGCTTTCCGTTGGTT 60.755 50.000 0.00 0.00 33.89 3.67
113 114 1.269051 GGCTTTCCGTTGGTTTCTGTG 60.269 52.381 0.00 0.00 0.00 3.66
140 141 7.049133 AGAGCAAATCATATCTCATATCTGGC 58.951 38.462 0.00 0.00 0.00 4.85
165 166 3.665675 AAAGGCGCTAGCTGACGGG 62.666 63.158 13.93 0.00 44.37 5.28
171 172 2.202623 CTAGCTGACGGGCGTGAC 60.203 66.667 0.00 0.00 37.29 3.67
287 291 1.913403 GCAAATGTGTTGCTCATACGC 59.087 47.619 3.85 0.00 41.87 4.42
295 299 3.073678 TGTTGCTCATACGCACAAATCT 58.926 40.909 0.00 0.00 40.09 2.40
487 523 4.974399 AGACAAAGGGGAAGAGTTTACAG 58.026 43.478 0.00 0.00 0.00 2.74
490 526 3.790089 AAGGGGAAGAGTTTACAGTGG 57.210 47.619 0.00 0.00 0.00 4.00
499 535 6.486993 GGAAGAGTTTACAGTGGAAACAAGAT 59.513 38.462 28.51 14.11 46.06 2.40
544 580 1.355720 GCTGGGGCTAATATGGACCAT 59.644 52.381 12.67 12.67 32.41 3.55
586 622 2.699212 CGCCGCGGCTTACTAAAC 59.301 61.111 43.60 15.84 39.32 2.01
688 725 2.803492 GCCGGAAGAGTATGTTGCTAGG 60.803 54.545 5.05 0.00 0.00 3.02
858 1172 2.339418 CTCTTCTTGCTCTGCAGTCTG 58.661 52.381 14.67 6.68 40.61 3.51
859 1173 0.797542 CTTCTTGCTCTGCAGTCTGC 59.202 55.000 18.32 18.32 45.29 4.26
1044 1444 4.680237 CAGCAGGAACCGCCGTCA 62.680 66.667 0.00 0.00 43.43 4.35
1342 1750 4.202441 TCTATAACGGCGAGGTAAAGACT 58.798 43.478 16.62 0.00 0.00 3.24
1753 2810 7.285788 ACATAAAAACACGACGATACAACTTC 58.714 34.615 0.00 0.00 0.00 3.01
1785 2842 4.165779 CGACATGCTGTAAATTTTGGACC 58.834 43.478 0.00 0.00 0.00 4.46
1960 3748 5.332581 CGCATGTAGTTCGTATTGGAATCTG 60.333 44.000 0.00 0.00 0.00 2.90
2379 4206 3.189376 TTCATGGGTGGCGTGCTCA 62.189 57.895 0.00 0.00 0.00 4.26
2417 4244 3.959535 TTGGTGAGGGCATTTCATTTC 57.040 42.857 0.00 0.00 0.00 2.17
2954 4947 2.754002 AGACTCCTTCGTAAGTGTAGCC 59.246 50.000 0.00 0.00 39.48 3.93
3368 5613 5.014438 TCCCCATGCATATGAGATACATGTT 59.986 40.000 2.30 0.00 39.77 2.71
3639 6033 4.458989 GTGAACCAGATTGGCACATCTTTA 59.541 41.667 8.75 0.00 42.67 1.85
3828 6225 2.416547 CGTCAACCTTGATCATGTCACC 59.583 50.000 0.00 0.00 39.73 4.02
4005 6402 6.812879 TTAAGTAGCTTTGTTAAAGGCTCC 57.187 37.500 0.00 0.00 44.85 4.70
4105 6502 9.683069 CACAAAAGTTGTTGAAGAAAGCTATAT 57.317 29.630 0.00 0.00 43.23 0.86
4663 7088 0.897621 TGGACATCGTCTCTGTGCAT 59.102 50.000 0.00 0.00 39.60 3.96
4953 16484 9.167311 CATTGGTACTTATATTCCCAGCTAATC 57.833 37.037 0.00 0.00 0.00 1.75
5065 16596 3.194329 TCTGATGGAGCACTTGTCTACAG 59.806 47.826 0.00 0.00 0.00 2.74
5068 16599 1.618837 TGGAGCACTTGTCTACAGTCC 59.381 52.381 0.00 0.00 0.00 3.85
5129 16660 5.996644 TGGTCCAAAACTTAGAAAGTGAGA 58.003 37.500 0.00 0.00 41.91 3.27
5203 16734 7.874016 TGGTTGGAATTGATGATTGAAAGAAAG 59.126 33.333 0.00 0.00 0.00 2.62
5304 16835 2.224305 GGACCGGGATCCATAACTTCAG 60.224 54.545 15.23 0.00 38.77 3.02
5418 16952 6.441093 TGGAATTATTGCAGACAGACATTC 57.559 37.500 0.00 0.00 0.00 2.67
5536 17075 6.424812 ACCAGAGCATTTTCATTAAAGCAAAC 59.575 34.615 0.00 0.00 0.00 2.93
5593 17132 1.067565 GCTCATCACCGAGACAACTGA 60.068 52.381 0.00 0.00 34.79 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.488341 GACATGGAGTGTGTACAGGTTATT 58.512 41.667 0.00 0.00 42.36 1.40
2 3 3.259876 GGACATGGAGTGTGTACAGGTTA 59.740 47.826 0.00 0.00 42.36 2.85
3 4 2.038557 GGACATGGAGTGTGTACAGGTT 59.961 50.000 0.00 0.00 42.36 3.50
4 5 1.623811 GGACATGGAGTGTGTACAGGT 59.376 52.381 0.00 0.00 42.36 4.00
5 6 1.902508 AGGACATGGAGTGTGTACAGG 59.097 52.381 0.00 0.00 42.36 4.00
6 7 2.300152 ACAGGACATGGAGTGTGTACAG 59.700 50.000 0.00 0.00 42.36 2.74
7 8 2.037121 CACAGGACATGGAGTGTGTACA 59.963 50.000 12.87 0.00 42.36 2.90
8 9 2.688507 CACAGGACATGGAGTGTGTAC 58.311 52.381 12.87 0.00 42.36 2.90
9 10 1.001974 GCACAGGACATGGAGTGTGTA 59.998 52.381 18.96 0.00 42.36 2.90
10 11 0.250467 GCACAGGACATGGAGTGTGT 60.250 55.000 18.96 4.62 42.36 3.72
11 12 0.250424 TGCACAGGACATGGAGTGTG 60.250 55.000 15.52 15.52 42.36 3.82
12 13 0.694771 ATGCACAGGACATGGAGTGT 59.305 50.000 0.00 0.00 45.83 3.55
96 97 2.092861 TCTCCACAGAAACCAACGGAAA 60.093 45.455 0.00 0.00 0.00 3.13
104 105 3.149196 TGATTTGCTCTCCACAGAAACC 58.851 45.455 0.00 0.00 0.00 3.27
105 106 6.541641 AGATATGATTTGCTCTCCACAGAAAC 59.458 38.462 0.00 0.00 0.00 2.78
106 107 6.656902 AGATATGATTTGCTCTCCACAGAAA 58.343 36.000 0.00 0.00 0.00 2.52
107 108 6.126968 TGAGATATGATTTGCTCTCCACAGAA 60.127 38.462 0.00 0.00 34.54 3.02
113 114 7.711772 CCAGATATGAGATATGATTTGCTCTCC 59.288 40.741 0.00 0.00 34.54 3.71
140 141 2.520904 GCTAGCGCCTTTGCTCTCG 61.521 63.158 2.29 0.00 45.87 4.04
193 197 1.615392 CAAAGGACAAAGGGAGCCTTG 59.385 52.381 0.00 0.00 43.92 3.61
287 291 9.903682 ATCAAAGATGAAAACTACAGATTTGTG 57.096 29.630 0.00 0.00 39.49 3.33
295 299 9.748708 CAAAGGAAATCAAAGATGAAAACTACA 57.251 29.630 0.00 0.00 39.49 2.74
487 523 3.077359 AGCTAGCACATCTTGTTTCCAC 58.923 45.455 18.83 0.00 0.00 4.02
490 526 2.421424 CCCAGCTAGCACATCTTGTTTC 59.579 50.000 18.83 0.00 0.00 2.78
521 557 1.140134 TCCATATTAGCCCCAGCCCC 61.140 60.000 0.00 0.00 41.25 5.80
544 580 1.420532 AAAACCGTAGCCACAGGGGA 61.421 55.000 0.00 0.00 40.01 4.81
669 706 3.119101 ACACCTAGCAACATACTCTTCCG 60.119 47.826 0.00 0.00 0.00 4.30
858 1172 0.039798 CTCTTGGTGTGTGTGCATGC 60.040 55.000 11.82 11.82 0.00 4.06
859 1173 0.039798 GCTCTTGGTGTGTGTGCATG 60.040 55.000 0.00 0.00 0.00 4.06
860 1174 0.179009 AGCTCTTGGTGTGTGTGCAT 60.179 50.000 0.00 0.00 0.00 3.96
861 1175 0.815213 GAGCTCTTGGTGTGTGTGCA 60.815 55.000 6.43 0.00 0.00 4.57
1044 1444 0.615850 GGTAGCTCAACTGCTTCCCT 59.384 55.000 0.00 0.00 42.36 4.20
1342 1750 4.345257 GTGGTGGAGCTAATGATCTTCCTA 59.655 45.833 0.00 0.00 0.00 2.94
1785 2842 2.762535 TTTCTTCCTGTTCTAGGCGG 57.237 50.000 0.00 0.00 46.87 6.13
1979 3767 1.275573 AGTAAGTGCTCCCTCCGTTTC 59.724 52.381 0.00 0.00 0.00 2.78
1984 3772 4.465305 TGTAACTAAGTAAGTGCTCCCTCC 59.535 45.833 0.00 0.00 38.88 4.30
2379 4206 2.094675 CAAATCCAATGTCCCGAGCTT 58.905 47.619 0.00 0.00 0.00 3.74
2417 4244 8.801715 ATATTCACACACAAAACTTAAAGCAG 57.198 30.769 0.00 0.00 0.00 4.24
2982 4975 3.861840 ACCCTCAACTAATCGTGTCATG 58.138 45.455 0.00 0.00 0.00 3.07
3614 5868 0.478072 TGTGCCAATCTGGTTCACCT 59.522 50.000 0.00 0.00 40.46 4.00
3828 6225 1.479709 AGAACTCATCCACCTCCTCG 58.520 55.000 0.00 0.00 0.00 4.63
4005 6402 0.810031 CCGTAAAGCAGGATGGACGG 60.810 60.000 0.00 0.00 43.27 4.79
4953 16484 3.084039 ACTGTGTCCACATGGCATAAAG 58.916 45.455 0.00 0.00 41.01 1.85
5065 16596 2.288579 TGTGTAGGTGACGTTCATGGAC 60.289 50.000 0.00 0.00 0.00 4.02
5068 16599 2.749776 TGTGTGTAGGTGACGTTCATG 58.250 47.619 0.00 0.00 0.00 3.07
5265 16796 6.476378 CCGGTCCTTTATTCCTCATAATCAT 58.524 40.000 0.00 0.00 0.00 2.45
5304 16835 5.967088 TGTTTTCTAGAGAGATGCCACTAC 58.033 41.667 0.00 0.00 0.00 2.73
5398 16932 4.943705 ACGGAATGTCTGTCTGCAATAATT 59.056 37.500 0.00 0.00 27.61 1.40
5413 16947 3.949754 TCTACGATACAAGGACGGAATGT 59.050 43.478 0.00 0.00 0.00 2.71
5418 16952 3.204526 AGAGTCTACGATACAAGGACGG 58.795 50.000 0.00 0.00 32.86 4.79
5472 17007 6.538021 GGATATGCATGATGGATAGTTGTCTC 59.462 42.308 10.16 4.10 34.20 3.36
5512 17049 6.647895 AGTTTGCTTTAATGAAAATGCTCTGG 59.352 34.615 0.00 0.00 0.00 3.86
5616 17155 3.139077 CACTGCCGAAAGTAGAAAAGGT 58.861 45.455 0.00 0.00 0.00 3.50
5630 17189 1.120530 ACTAATCTACCCCACTGCCG 58.879 55.000 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.