Multiple sequence alignment - TraesCS5A01G489000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G489000 chr5A 100.000 6543 0 0 1 6543 659145009 659138467 0.000000e+00 12083.0
1 TraesCS5A01G489000 chr5A 97.210 4875 53 20 982 5800 707826849 707822002 0.000000e+00 8172.0
2 TraesCS5A01G489000 chr5A 96.244 213 4 3 6335 6543 707821994 707821782 4.860000e-91 346.0
3 TraesCS5A01G489000 chr5A 95.620 137 5 1 762 897 707827389 707827253 1.100000e-52 219.0
4 TraesCS5A01G489000 chr5A 97.959 49 1 0 851 899 659144110 659144062 1.170000e-12 86.1
5 TraesCS5A01G489000 chr5A 97.959 49 1 0 900 948 659144159 659144111 1.170000e-12 86.1
6 TraesCS5A01G489000 chr5A 96.078 51 2 0 6493 6543 709672735 709672785 4.200000e-12 84.2
7 TraesCS5A01G489000 chr5A 97.436 39 1 0 724 762 707827765 707827727 4.230000e-07 67.6
8 TraesCS5A01G489000 chrUn 95.459 4735 142 32 982 5677 100179845 100175145 0.000000e+00 7485.0
9 TraesCS5A01G489000 chrUn 86.829 205 21 5 204 407 100181606 100181407 2.370000e-54 224.0
10 TraesCS5A01G489000 chrUn 96.694 121 4 0 777 897 100180376 100180256 1.110000e-47 202.0
11 TraesCS5A01G489000 chr2B 93.726 4766 158 62 982 5685 95352858 95348172 0.000000e+00 7014.0
12 TraesCS5A01G489000 chr2B 87.715 407 36 8 3 405 95354977 95354581 4.620000e-126 462.0
13 TraesCS5A01G489000 chr2B 80.198 404 23 11 6178 6543 95341551 95341167 3.920000e-62 250.0
14 TraesCS5A01G489000 chr2B 81.788 302 15 11 6178 6464 95346417 95346141 3.970000e-52 217.0
15 TraesCS5A01G489000 chr2B 94.017 117 7 0 781 897 95353378 95353262 1.870000e-40 178.0
16 TraesCS5A01G489000 chr2B 94.805 77 4 0 5351 5427 95348566 95348490 3.200000e-23 121.0
17 TraesCS5A01G489000 chr2B 78.818 203 13 10 574 762 95354346 95354160 6.940000e-20 110.0
18 TraesCS5A01G489000 chr2B 94.737 57 3 0 491 547 95354498 95354442 9.040000e-14 89.8
19 TraesCS5A01G489000 chr4B 93.280 4747 180 58 982 5643 672112121 672116813 0.000000e+00 6870.0
20 TraesCS5A01G489000 chr4B 93.962 2120 102 13 2197 4306 646316705 646318808 0.000000e+00 3182.0
21 TraesCS5A01G489000 chr4B 93.815 2118 101 10 2197 4306 646333787 646335882 0.000000e+00 3158.0
22 TraesCS5A01G489000 chr4B 93.433 2132 99 14 2197 4306 646274262 646276374 0.000000e+00 3123.0
23 TraesCS5A01G489000 chr4B 93.189 2129 108 12 2200 4306 646361082 646363195 0.000000e+00 3094.0
24 TraesCS5A01G489000 chr4B 93.444 1922 89 12 2200 4099 646307836 646309742 0.000000e+00 2817.0
25 TraesCS5A01G489000 chr4B 91.755 376 24 4 4305 4675 646336042 646336415 3.500000e-142 516.0
26 TraesCS5A01G489000 chr4B 91.512 377 23 5 4305 4675 646276534 646276907 1.630000e-140 510.0
27 TraesCS5A01G489000 chr4B 90.981 377 25 5 4305 4675 646318970 646319343 3.520000e-137 499.0
28 TraesCS5A01G489000 chr4B 89.594 394 27 6 4305 4687 646363355 646363745 7.630000e-134 488.0
29 TraesCS5A01G489000 chr4B 86.222 225 27 4 172 394 672110240 672110462 2.360000e-59 241.0
30 TraesCS5A01G489000 chr4B 82.609 230 12 15 5457 5679 646276935 646277143 1.870000e-40 178.0
31 TraesCS5A01G489000 chr4B 94.017 117 7 0 781 897 672111601 672111717 1.870000e-40 178.0
32 TraesCS5A01G489000 chr4B 86.957 161 8 3 5457 5607 646336443 646336600 1.130000e-37 169.0
33 TraesCS5A01G489000 chr4B 75.434 403 42 18 6178 6542 646279122 646279505 6.840000e-30 143.0
34 TraesCS5A01G489000 chr4B 80.423 189 21 5 6178 6351 646365933 646366120 5.320000e-26 130.0
35 TraesCS5A01G489000 chr4B 92.308 91 4 1 5457 5547 646363756 646363843 6.890000e-25 126.0
36 TraesCS5A01G489000 chr4B 92.500 80 5 1 6464 6543 646321816 646321894 5.360000e-21 113.0
37 TraesCS5A01G489000 chr4B 92.405 79 6 0 6464 6542 646347358 646347436 5.360000e-21 113.0
38 TraesCS5A01G489000 chr4B 93.846 65 4 0 6400 6464 646347271 646347335 1.500000e-16 99.0
39 TraesCS5A01G489000 chr4B 87.500 72 8 1 6178 6249 646321459 646321529 1.510000e-11 82.4
40 TraesCS5A01G489000 chr4B 86.111 72 9 1 6178 6249 646279045 646279115 7.040000e-10 76.8
41 TraesCS5A01G489000 chr4B 86.111 72 9 1 6178 6249 646347001 646347071 7.040000e-10 76.8
42 TraesCS5A01G489000 chr4B 86.111 72 9 1 6178 6249 646365856 646365926 7.040000e-10 76.8
43 TraesCS5A01G489000 chr4B 100.000 34 0 0 5646 5679 646336618 646336651 5.480000e-06 63.9
44 TraesCS5A01G489000 chr2D 84.662 665 61 25 982 1643 602418604 602417978 5.570000e-175 625.0
45 TraesCS5A01G489000 chr2D 84.337 664 60 24 982 1643 42698400 42697779 1.560000e-170 610.0
46 TraesCS5A01G489000 chr3B 95.070 284 14 0 1095 1378 47190805 47191088 1.290000e-121 448.0
47 TraesCS5A01G489000 chr3B 94.350 177 10 0 1095 1271 47189836 47189660 8.360000e-69 272.0
48 TraesCS5A01G489000 chr3B 95.690 116 5 0 1308 1423 47189662 47189547 3.120000e-43 187.0
49 TraesCS5A01G489000 chr3D 88.390 267 25 4 1391 1657 129678086 129678346 3.810000e-82 316.0
50 TraesCS5A01G489000 chr5D 95.455 44 1 1 6394 6436 78059000 78059043 1.180000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G489000 chr5A 659138467 659145009 6542 True 4085.066667 12083 98.639333 1 6543 3 chr5A.!!$R1 6542
1 TraesCS5A01G489000 chr5A 707821782 707827765 5983 True 2201.150000 8172 96.627500 724 6543 4 chr5A.!!$R2 5819
2 TraesCS5A01G489000 chrUn 100175145 100181606 6461 True 2637.000000 7485 92.994000 204 5677 3 chrUn.!!$R1 5473
3 TraesCS5A01G489000 chr2B 95346141 95352858 6717 True 3615.500000 7014 87.757000 982 6464 2 chr2B.!!$R3 5482
4 TraesCS5A01G489000 chr2B 95353262 95354977 1715 True 209.950000 462 88.821750 3 897 4 chr2B.!!$R4 894
5 TraesCS5A01G489000 chr4B 646307836 646309742 1906 False 2817.000000 2817 93.444000 2200 4099 1 chr4B.!!$F1 1899
6 TraesCS5A01G489000 chr4B 672110240 672116813 6573 False 2429.666667 6870 91.173000 172 5643 3 chr4B.!!$F7 5471
7 TraesCS5A01G489000 chr4B 646333787 646336651 2864 False 976.725000 3158 93.131750 2197 5679 4 chr4B.!!$F4 3482
8 TraesCS5A01G489000 chr4B 646316705 646321894 5189 False 969.100000 3182 91.235750 2197 6543 4 chr4B.!!$F3 4346
9 TraesCS5A01G489000 chr4B 646274262 646279505 5243 False 806.160000 3123 85.819800 2197 6542 5 chr4B.!!$F2 4345
10 TraesCS5A01G489000 chr4B 646361082 646366120 5038 False 782.960000 3094 88.325000 2200 6351 5 chr4B.!!$F6 4151
11 TraesCS5A01G489000 chr2D 602417978 602418604 626 True 625.000000 625 84.662000 982 1643 1 chr2D.!!$R2 661
12 TraesCS5A01G489000 chr2D 42697779 42698400 621 True 610.000000 610 84.337000 982 1643 1 chr2D.!!$R1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 1970 0.035630 CAAGGAGGGGAGTTGCTCTG 60.036 60.000 0.00 0.00 0.0 3.35 F
926 1993 0.106149 ACTTGTTTTCCGGCGACTCT 59.894 50.000 9.30 0.00 0.0 3.24 F
934 2001 0.606096 TCCGGCGACTCTTTCATTCA 59.394 50.000 9.30 0.00 0.0 2.57 F
935 2002 1.001520 TCCGGCGACTCTTTCATTCAA 59.998 47.619 9.30 0.00 0.0 2.69 F
2597 4072 1.003696 GGGACTGAAAGGAACAGAGGG 59.996 57.143 0.00 0.00 39.3 4.30 F
2829 4305 1.545841 CCTTTGGCACCCTTCCTTAC 58.454 55.000 0.00 0.00 0.0 2.34 F
3675 5179 1.671556 CCATCCGACAATGACGTGTCA 60.672 52.381 4.99 4.99 46.9 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2542 4017 1.213430 TCTTCCCGGTTCCTGTTTGTT 59.787 47.619 0.00 0.00 0.00 2.83 R
2597 4072 7.279750 CTCCTCCAGAGTTCTATAGTTTACC 57.720 44.000 0.00 0.00 37.87 2.85 R
3478 4981 2.783135 TCCAGAGCAACAAACAGATCC 58.217 47.619 0.00 0.00 0.00 3.36 R
3608 5112 1.203505 TCCAATCCCCTCCTGTTACCA 60.204 52.381 0.00 0.00 0.00 3.25 R
3717 5221 0.034186 TTGCTGGGCCCAGTTCTATG 60.034 55.000 44.45 24.91 45.24 2.23 R
3757 5261 5.452356 CCATCTGTTTGACCTTTTGAAGCTT 60.452 40.000 0.00 0.00 0.00 3.74 R
5921 8017 0.036858 AGAAGGAGAAAGACAGCCGC 60.037 55.000 0.00 0.00 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.473434 CCCATTCTCCTAGCGTGGAAC 60.473 57.143 2.55 0.00 35.43 3.62
50 51 0.888619 CCTAGCGTGGAACAGACAGA 59.111 55.000 0.00 0.00 41.80 3.41
55 56 1.491670 CGTGGAACAGACAGACACAG 58.508 55.000 0.00 0.00 41.80 3.66
117 118 1.341209 CCACCAGCCTGAAAGAAAACC 59.659 52.381 0.00 0.00 34.07 3.27
149 150 7.404671 TTTACTTAATTCATTCAAGGGAGCC 57.595 36.000 0.00 0.00 0.00 4.70
278 282 5.504173 CGAGAACGATGCTCTACTACAATGA 60.504 44.000 0.00 0.00 42.66 2.57
288 292 5.277250 GCTCTACTACAATGAAATGCTGCTC 60.277 44.000 0.00 0.00 0.00 4.26
292 296 1.131883 ACAATGAAATGCTGCTCTCGC 59.868 47.619 0.00 0.00 0.00 5.03
308 312 2.343758 GCTGTGCGAGTGAAGGGA 59.656 61.111 0.00 0.00 0.00 4.20
318 322 3.262420 CGAGTGAAGGGAAAATCGTGAT 58.738 45.455 0.00 0.00 0.00 3.06
319 323 4.430007 CGAGTGAAGGGAAAATCGTGATA 58.570 43.478 0.00 0.00 0.00 2.15
321 325 5.661458 GAGTGAAGGGAAAATCGTGATAGA 58.339 41.667 0.00 0.00 0.00 1.98
323 327 5.187967 AGTGAAGGGAAAATCGTGATAGACT 59.812 40.000 0.00 0.00 0.00 3.24
324 328 5.292101 GTGAAGGGAAAATCGTGATAGACTG 59.708 44.000 0.00 0.00 0.00 3.51
329 333 5.163499 GGGAAAATCGTGATAGACTGACTCT 60.163 44.000 0.00 0.00 0.00 3.24
333 337 3.536570 TCGTGATAGACTGACTCTGAGG 58.463 50.000 9.85 0.00 0.00 3.86
346 350 0.687757 TCTGAGGGGCATAGCTCGTT 60.688 55.000 0.00 0.00 0.00 3.85
362 367 0.378962 CGTTGAACCACAAGGCGAAA 59.621 50.000 0.00 0.00 39.30 3.46
363 368 1.001815 CGTTGAACCACAAGGCGAAAT 60.002 47.619 0.00 0.00 39.30 2.17
396 401 1.988107 ACTCAGAAATCTCCAAGGGCA 59.012 47.619 0.00 0.00 0.00 5.36
417 447 6.777398 GGCAAACCAACAGACATAGACATGT 61.777 44.000 0.00 0.00 41.34 3.21
420 450 5.738619 ACCAACAGACATAGACATGTACA 57.261 39.130 0.00 0.00 45.58 2.90
489 533 4.647424 TTTTTCTGAGCGGTGTGAAATT 57.353 36.364 10.89 0.00 0.00 1.82
565 624 1.495584 CCGAACCCGTTCACACACAG 61.496 60.000 8.23 0.00 39.46 3.66
594 708 2.138320 CAGAGCAGAGCAGTTTCGAAA 58.862 47.619 6.47 6.47 0.00 3.46
601 715 1.393883 GAGCAGTTTCGAAATCGGACC 59.606 52.381 14.69 0.00 40.29 4.46
616 739 3.969250 GACCGCGGCTCCAATCCAA 62.969 63.158 28.58 0.00 0.00 3.53
683 824 4.834453 CCTCTCGCAGGCAGGCAG 62.834 72.222 0.00 0.00 34.56 4.85
869 1936 2.543653 CCCTCTGCAAACTTGTTTTCCG 60.544 50.000 0.00 0.00 0.00 4.30
881 1948 1.223187 GTTTTCCGGCGACTCTTTCA 58.777 50.000 9.30 0.00 0.00 2.69
897 1964 3.657727 TCTTTCATTCAAGGAGGGGAGTT 59.342 43.478 0.00 0.00 0.00 3.01
898 1965 3.439857 TTCATTCAAGGAGGGGAGTTG 57.560 47.619 0.00 0.00 0.00 3.16
899 1966 1.004745 TCATTCAAGGAGGGGAGTTGC 59.995 52.381 0.00 0.00 0.00 4.17
900 1967 1.005215 CATTCAAGGAGGGGAGTTGCT 59.995 52.381 0.00 0.00 0.00 3.91
901 1968 0.693049 TTCAAGGAGGGGAGTTGCTC 59.307 55.000 0.00 0.00 0.00 4.26
902 1969 0.178891 TCAAGGAGGGGAGTTGCTCT 60.179 55.000 0.00 0.00 0.00 4.09
903 1970 0.035630 CAAGGAGGGGAGTTGCTCTG 60.036 60.000 0.00 0.00 0.00 3.35
904 1971 1.846712 AAGGAGGGGAGTTGCTCTGC 61.847 60.000 0.00 0.00 0.00 4.26
905 1972 2.596851 GGAGGGGAGTTGCTCTGCA 61.597 63.158 0.00 0.00 36.18 4.41
906 1973 1.376466 GAGGGGAGTTGCTCTGCAA 59.624 57.895 0.45 0.45 46.80 4.08
917 1984 3.163630 TGCTCTGCAAACTTGTTTTCC 57.836 42.857 0.00 0.00 34.76 3.13
918 1985 2.119457 GCTCTGCAAACTTGTTTTCCG 58.881 47.619 0.00 0.00 0.00 4.30
919 1986 2.731217 CTCTGCAAACTTGTTTTCCGG 58.269 47.619 0.00 0.00 0.00 5.14
920 1987 1.202359 TCTGCAAACTTGTTTTCCGGC 60.202 47.619 0.00 0.00 0.00 6.13
921 1988 0.526524 TGCAAACTTGTTTTCCGGCG 60.527 50.000 0.00 0.00 0.00 6.46
922 1989 0.248702 GCAAACTTGTTTTCCGGCGA 60.249 50.000 9.30 0.00 0.00 5.54
923 1990 1.472990 CAAACTTGTTTTCCGGCGAC 58.527 50.000 9.30 0.00 0.00 5.19
924 1991 1.064952 CAAACTTGTTTTCCGGCGACT 59.935 47.619 9.30 0.00 0.00 4.18
925 1992 0.942252 AACTTGTTTTCCGGCGACTC 59.058 50.000 9.30 0.00 0.00 3.36
926 1993 0.106149 ACTTGTTTTCCGGCGACTCT 59.894 50.000 9.30 0.00 0.00 3.24
927 1994 1.226746 CTTGTTTTCCGGCGACTCTT 58.773 50.000 9.30 0.00 0.00 2.85
928 1995 1.602377 CTTGTTTTCCGGCGACTCTTT 59.398 47.619 9.30 0.00 0.00 2.52
929 1996 1.223187 TGTTTTCCGGCGACTCTTTC 58.777 50.000 9.30 0.00 0.00 2.62
930 1997 1.223187 GTTTTCCGGCGACTCTTTCA 58.777 50.000 9.30 0.00 0.00 2.69
931 1998 1.804748 GTTTTCCGGCGACTCTTTCAT 59.195 47.619 9.30 0.00 0.00 2.57
932 1999 2.178912 TTTCCGGCGACTCTTTCATT 57.821 45.000 9.30 0.00 0.00 2.57
933 2000 1.722011 TTCCGGCGACTCTTTCATTC 58.278 50.000 9.30 0.00 0.00 2.67
934 2001 0.606096 TCCGGCGACTCTTTCATTCA 59.394 50.000 9.30 0.00 0.00 2.57
935 2002 1.001520 TCCGGCGACTCTTTCATTCAA 59.998 47.619 9.30 0.00 0.00 2.69
936 2003 1.128692 CCGGCGACTCTTTCATTCAAC 59.871 52.381 9.30 0.00 0.00 3.18
937 2004 1.201812 CGGCGACTCTTTCATTCAACG 60.202 52.381 0.00 0.00 0.00 4.10
938 2005 2.066262 GGCGACTCTTTCATTCAACGA 58.934 47.619 0.00 0.00 0.00 3.85
939 2006 2.092838 GGCGACTCTTTCATTCAACGAG 59.907 50.000 0.00 0.00 36.61 4.18
940 2007 2.092838 GCGACTCTTTCATTCAACGAGG 59.907 50.000 0.00 0.00 35.17 4.63
941 2008 2.668457 CGACTCTTTCATTCAACGAGGG 59.332 50.000 0.00 0.00 35.17 4.30
942 2009 3.003480 GACTCTTTCATTCAACGAGGGG 58.997 50.000 0.00 0.00 35.17 4.79
943 2010 2.637872 ACTCTTTCATTCAACGAGGGGA 59.362 45.455 0.00 0.00 35.17 4.81
944 2011 3.265791 CTCTTTCATTCAACGAGGGGAG 58.734 50.000 0.00 0.00 28.59 4.30
945 2012 2.637872 TCTTTCATTCAACGAGGGGAGT 59.362 45.455 0.00 0.00 0.00 3.85
946 2013 3.072476 TCTTTCATTCAACGAGGGGAGTT 59.928 43.478 0.00 0.00 0.00 3.01
959 2026 4.479158 GAGGGGAGTTGATAGAGACATCT 58.521 47.826 0.00 0.00 39.75 2.90
1697 3163 3.748048 TGCTCTGATTTACTGTCTGCAAC 59.252 43.478 0.00 0.00 0.00 4.17
2045 3512 3.074538 AGGAGACAAAAGGTGCCTATTGT 59.925 43.478 0.00 0.00 38.62 2.71
2212 3679 5.316167 TGTGTTGTAGATTTTGATGGAGCT 58.684 37.500 0.00 0.00 0.00 4.09
2597 4072 1.003696 GGGACTGAAAGGAACAGAGGG 59.996 57.143 0.00 0.00 39.30 4.30
2829 4305 1.545841 CCTTTGGCACCCTTCCTTAC 58.454 55.000 0.00 0.00 0.00 2.34
3478 4981 8.480086 CTTGCTCCAAGACTCTTTAGGTAACTG 61.480 44.444 0.00 0.00 45.78 3.16
3608 5112 6.603201 TCTTTTCTGTTCTTCTCCACAATTGT 59.397 34.615 4.92 4.92 0.00 2.71
3675 5179 1.671556 CCATCCGACAATGACGTGTCA 60.672 52.381 4.99 4.99 46.90 3.58
3757 5261 2.680974 GAAGCAGGTGGACACAGCCA 62.681 60.000 13.18 0.00 46.03 4.75
4111 5623 4.887071 ACTTGTAAATTGTGCCTGACAGAA 59.113 37.500 3.32 0.00 35.44 3.02
4273 5787 2.735134 CAGCACAAGGTAACGTAGGAAC 59.265 50.000 0.00 0.00 46.39 3.62
4367 6045 1.208052 GCAGATAGTGGAGTTGGAGCA 59.792 52.381 0.00 0.00 0.00 4.26
5707 7580 7.555195 GGGGCTGTACTGTATTTGTACTTTATT 59.445 37.037 1.46 0.00 40.44 1.40
5776 7872 1.912001 CACAGCCTGTGTTGTTGTTG 58.088 50.000 16.78 0.00 43.08 3.33
5777 7873 1.202114 CACAGCCTGTGTTGTTGTTGT 59.798 47.619 16.78 0.00 43.08 3.32
5779 7875 2.261345 CAGCCTGTGTTGTTGTTGTTG 58.739 47.619 0.00 0.00 0.00 3.33
5780 7876 1.892474 AGCCTGTGTTGTTGTTGTTGT 59.108 42.857 0.00 0.00 0.00 3.32
5781 7877 2.298729 AGCCTGTGTTGTTGTTGTTGTT 59.701 40.909 0.00 0.00 0.00 2.83
5782 7878 2.411409 GCCTGTGTTGTTGTTGTTGTTG 59.589 45.455 0.00 0.00 0.00 3.33
5783 7879 3.648009 CCTGTGTTGTTGTTGTTGTTGT 58.352 40.909 0.00 0.00 0.00 3.32
5785 7881 4.084641 CCTGTGTTGTTGTTGTTGTTGTTG 60.085 41.667 0.00 0.00 0.00 3.33
5786 7882 4.433615 TGTGTTGTTGTTGTTGTTGTTGT 58.566 34.783 0.00 0.00 0.00 3.32
5787 7883 4.870426 TGTGTTGTTGTTGTTGTTGTTGTT 59.130 33.333 0.00 0.00 0.00 2.83
5788 7884 5.193936 GTGTTGTTGTTGTTGTTGTTGTTG 58.806 37.500 0.00 0.00 0.00 3.33
5789 7885 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5790 7886 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5791 7887 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5792 7888 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5793 7889 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5794 7890 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5795 7891 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5796 7892 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5797 7893 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5798 7894 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5799 7895 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
5800 7896 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5801 7897 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
5833 7929 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
5839 7935 6.856938 TGTTGTTGTTGTTGTTGTTGTACTAC 59.143 34.615 0.05 0.05 0.00 2.73
5840 7936 6.804770 TGTTGTTGTTGTTGTTGTACTACT 57.195 33.333 8.88 0.00 0.00 2.57
5841 7937 7.204496 TGTTGTTGTTGTTGTTGTACTACTT 57.796 32.000 8.88 0.00 0.00 2.24
5842 7938 7.078851 TGTTGTTGTTGTTGTTGTACTACTTG 58.921 34.615 8.88 0.00 0.00 3.16
5843 7939 6.184580 TGTTGTTGTTGTTGTACTACTTGG 57.815 37.500 8.88 0.00 0.00 3.61
5844 7940 4.886247 TGTTGTTGTTGTACTACTTGGC 57.114 40.909 8.88 0.00 0.00 4.52
5845 7941 3.310227 TGTTGTTGTTGTACTACTTGGCG 59.690 43.478 8.88 0.00 0.00 5.69
5846 7942 1.868498 TGTTGTTGTACTACTTGGCGC 59.132 47.619 0.00 0.00 0.00 6.53
5847 7943 1.196127 GTTGTTGTACTACTTGGCGCC 59.804 52.381 22.73 22.73 0.00 6.53
5848 7944 0.682852 TGTTGTACTACTTGGCGCCT 59.317 50.000 29.70 10.43 0.00 5.52
5849 7945 1.337447 TGTTGTACTACTTGGCGCCTC 60.337 52.381 29.70 1.40 0.00 4.70
5850 7946 1.067071 GTTGTACTACTTGGCGCCTCT 60.067 52.381 29.70 12.18 0.00 3.69
5851 7947 0.815734 TGTACTACTTGGCGCCTCTC 59.184 55.000 29.70 9.63 0.00 3.20
5852 7948 0.102663 GTACTACTTGGCGCCTCTCC 59.897 60.000 29.70 0.00 0.00 3.71
5853 7949 0.033405 TACTACTTGGCGCCTCTCCT 60.033 55.000 29.70 8.15 0.00 3.69
5854 7950 1.324005 ACTACTTGGCGCCTCTCCTC 61.324 60.000 29.70 0.00 0.00 3.71
5855 7951 1.000486 TACTTGGCGCCTCTCCTCT 60.000 57.895 29.70 5.30 0.00 3.69
5856 7952 1.323271 TACTTGGCGCCTCTCCTCTG 61.323 60.000 29.70 10.55 0.00 3.35
5857 7953 2.604686 TTGGCGCCTCTCCTCTGT 60.605 61.111 29.70 0.00 0.00 3.41
5858 7954 2.570582 CTTGGCGCCTCTCCTCTGTC 62.571 65.000 29.70 0.00 0.00 3.51
5859 7955 3.071206 GGCGCCTCTCCTCTGTCA 61.071 66.667 22.15 0.00 0.00 3.58
5860 7956 2.183046 GCGCCTCTCCTCTGTCAC 59.817 66.667 0.00 0.00 0.00 3.67
5861 7957 2.640302 GCGCCTCTCCTCTGTCACA 61.640 63.158 0.00 0.00 0.00 3.58
5862 7958 1.967535 CGCCTCTCCTCTGTCACAA 59.032 57.895 0.00 0.00 0.00 3.33
5863 7959 0.108898 CGCCTCTCCTCTGTCACAAG 60.109 60.000 0.00 0.00 0.00 3.16
5864 7960 1.261480 GCCTCTCCTCTGTCACAAGA 58.739 55.000 0.00 0.00 0.00 3.02
5865 7961 1.620819 GCCTCTCCTCTGTCACAAGAA 59.379 52.381 0.00 0.00 0.00 2.52
5866 7962 2.037772 GCCTCTCCTCTGTCACAAGAAA 59.962 50.000 0.00 0.00 0.00 2.52
5867 7963 3.864160 GCCTCTCCTCTGTCACAAGAAAG 60.864 52.174 0.00 0.00 0.00 2.62
5868 7964 3.576118 CCTCTCCTCTGTCACAAGAAAGA 59.424 47.826 0.00 0.00 35.73 2.52
5873 7969 4.465040 CTCTGTCACAAGAAAGAGCAAC 57.535 45.455 0.10 0.00 46.41 4.17
5874 7970 3.872696 TCTGTCACAAGAAAGAGCAACA 58.127 40.909 0.00 0.00 33.09 3.33
5875 7971 4.260985 TCTGTCACAAGAAAGAGCAACAA 58.739 39.130 0.00 0.00 33.09 2.83
5876 7972 4.699735 TCTGTCACAAGAAAGAGCAACAAA 59.300 37.500 0.00 0.00 33.09 2.83
5877 7973 5.182950 TCTGTCACAAGAAAGAGCAACAAAA 59.817 36.000 0.00 0.00 33.09 2.44
5878 7974 5.160641 TGTCACAAGAAAGAGCAACAAAAC 58.839 37.500 0.00 0.00 0.00 2.43
5879 7975 5.160641 GTCACAAGAAAGAGCAACAAAACA 58.839 37.500 0.00 0.00 0.00 2.83
5880 7976 5.807011 GTCACAAGAAAGAGCAACAAAACAT 59.193 36.000 0.00 0.00 0.00 2.71
5881 7977 6.972328 GTCACAAGAAAGAGCAACAAAACATA 59.028 34.615 0.00 0.00 0.00 2.29
5882 7978 7.649306 GTCACAAGAAAGAGCAACAAAACATAT 59.351 33.333 0.00 0.00 0.00 1.78
5883 7979 7.862372 TCACAAGAAAGAGCAACAAAACATATC 59.138 33.333 0.00 0.00 0.00 1.63
5884 7980 7.115378 CACAAGAAAGAGCAACAAAACATATCC 59.885 37.037 0.00 0.00 0.00 2.59
5885 7981 6.899393 AGAAAGAGCAACAAAACATATCCA 57.101 33.333 0.00 0.00 0.00 3.41
5886 7982 6.681777 AGAAAGAGCAACAAAACATATCCAC 58.318 36.000 0.00 0.00 0.00 4.02
5887 7983 6.265196 AGAAAGAGCAACAAAACATATCCACA 59.735 34.615 0.00 0.00 0.00 4.17
5888 7984 6.403866 AAGAGCAACAAAACATATCCACAA 57.596 33.333 0.00 0.00 0.00 3.33
5889 7985 5.772521 AGAGCAACAAAACATATCCACAAC 58.227 37.500 0.00 0.00 0.00 3.32
5890 7986 5.301551 AGAGCAACAAAACATATCCACAACA 59.698 36.000 0.00 0.00 0.00 3.33
5891 7987 6.015180 AGAGCAACAAAACATATCCACAACAT 60.015 34.615 0.00 0.00 0.00 2.71
5892 7988 7.176515 AGAGCAACAAAACATATCCACAACATA 59.823 33.333 0.00 0.00 0.00 2.29
5893 7989 7.315142 AGCAACAAAACATATCCACAACATAG 58.685 34.615 0.00 0.00 0.00 2.23
5894 7990 7.039784 AGCAACAAAACATATCCACAACATAGT 60.040 33.333 0.00 0.00 0.00 2.12
5895 7991 7.062138 GCAACAAAACATATCCACAACATAGTG 59.938 37.037 0.00 0.00 39.21 2.74
5896 7992 7.759489 ACAAAACATATCCACAACATAGTGT 57.241 32.000 0.00 0.00 37.82 3.55
5897 7993 7.816640 ACAAAACATATCCACAACATAGTGTC 58.183 34.615 0.00 0.00 37.82 3.67
5898 7994 7.665559 ACAAAACATATCCACAACATAGTGTCT 59.334 33.333 0.00 0.00 37.82 3.41
5899 7995 9.161629 CAAAACATATCCACAACATAGTGTCTA 57.838 33.333 0.00 0.00 37.82 2.59
5900 7996 9.905713 AAAACATATCCACAACATAGTGTCTAT 57.094 29.630 0.00 0.00 37.82 1.98
5901 7997 8.893219 AACATATCCACAACATAGTGTCTATG 57.107 34.615 13.18 13.18 37.64 2.23
5902 7998 8.023021 ACATATCCACAACATAGTGTCTATGT 57.977 34.615 14.27 14.27 38.71 2.29
5903 7999 8.486210 ACATATCCACAACATAGTGTCTATGTT 58.514 33.333 21.79 21.79 45.77 2.71
5904 8000 8.982685 CATATCCACAACATAGTGTCTATGTTC 58.017 37.037 23.57 0.00 43.80 3.18
5905 8001 6.605471 TCCACAACATAGTGTCTATGTTCT 57.395 37.500 23.57 14.71 43.80 3.01
5906 8002 6.398095 TCCACAACATAGTGTCTATGTTCTG 58.602 40.000 23.57 21.86 43.80 3.02
5907 8003 5.582269 CCACAACATAGTGTCTATGTTCTGG 59.418 44.000 26.23 26.23 43.80 3.86
5908 8004 6.166279 CACAACATAGTGTCTATGTTCTGGT 58.834 40.000 23.57 18.13 43.80 4.00
5909 8005 6.650807 CACAACATAGTGTCTATGTTCTGGTT 59.349 38.462 23.57 7.56 43.80 3.67
5910 8006 7.173218 CACAACATAGTGTCTATGTTCTGGTTT 59.827 37.037 23.57 7.02 43.80 3.27
5911 8007 7.387948 ACAACATAGTGTCTATGTTCTGGTTTC 59.612 37.037 23.57 0.00 43.80 2.78
5912 8008 6.407202 ACATAGTGTCTATGTTCTGGTTTCC 58.593 40.000 14.27 0.00 34.79 3.13
5913 8009 6.213600 ACATAGTGTCTATGTTCTGGTTTCCT 59.786 38.462 14.27 0.00 34.79 3.36
5914 8010 5.568620 AGTGTCTATGTTCTGGTTTCCTT 57.431 39.130 0.00 0.00 0.00 3.36
5915 8011 6.681729 AGTGTCTATGTTCTGGTTTCCTTA 57.318 37.500 0.00 0.00 0.00 2.69
5916 8012 7.074653 AGTGTCTATGTTCTGGTTTCCTTAA 57.925 36.000 0.00 0.00 0.00 1.85
5917 8013 7.162082 AGTGTCTATGTTCTGGTTTCCTTAAG 58.838 38.462 0.00 0.00 0.00 1.85
5918 8014 5.938125 TGTCTATGTTCTGGTTTCCTTAAGC 59.062 40.000 0.00 0.00 34.80 3.09
5919 8015 6.174049 GTCTATGTTCTGGTTTCCTTAAGCT 58.826 40.000 0.00 0.00 35.28 3.74
5920 8016 6.655425 GTCTATGTTCTGGTTTCCTTAAGCTT 59.345 38.462 3.48 3.48 35.28 3.74
5921 8017 5.712152 ATGTTCTGGTTTCCTTAAGCTTG 57.288 39.130 9.86 0.00 35.28 4.01
5922 8018 3.317993 TGTTCTGGTTTCCTTAAGCTTGC 59.682 43.478 9.86 0.00 35.28 4.01
5923 8019 2.151202 TCTGGTTTCCTTAAGCTTGCG 58.849 47.619 9.86 0.00 35.28 4.85
5924 8020 1.200020 CTGGTTTCCTTAAGCTTGCGG 59.800 52.381 9.86 9.35 35.28 5.69
5925 8021 0.109272 GGTTTCCTTAAGCTTGCGGC 60.109 55.000 9.86 0.00 42.19 6.53
5934 8030 3.660621 GCTTGCGGCTGTCTTTCT 58.339 55.556 0.00 0.00 38.06 2.52
5935 8031 1.499502 GCTTGCGGCTGTCTTTCTC 59.500 57.895 0.00 0.00 38.06 2.87
5936 8032 1.916697 GCTTGCGGCTGTCTTTCTCC 61.917 60.000 0.00 0.00 38.06 3.71
5937 8033 0.321122 CTTGCGGCTGTCTTTCTCCT 60.321 55.000 0.00 0.00 0.00 3.69
5938 8034 0.108585 TTGCGGCTGTCTTTCTCCTT 59.891 50.000 0.00 0.00 0.00 3.36
5939 8035 0.320771 TGCGGCTGTCTTTCTCCTTC 60.321 55.000 0.00 0.00 0.00 3.46
5940 8036 0.036858 GCGGCTGTCTTTCTCCTTCT 60.037 55.000 0.00 0.00 0.00 2.85
5941 8037 2.003196 CGGCTGTCTTTCTCCTTCTC 57.997 55.000 0.00 0.00 0.00 2.87
5942 8038 1.548269 CGGCTGTCTTTCTCCTTCTCT 59.452 52.381 0.00 0.00 0.00 3.10
5943 8039 2.028567 CGGCTGTCTTTCTCCTTCTCTT 60.029 50.000 0.00 0.00 0.00 2.85
5944 8040 3.556004 CGGCTGTCTTTCTCCTTCTCTTT 60.556 47.826 0.00 0.00 0.00 2.52
5945 8041 4.000325 GGCTGTCTTTCTCCTTCTCTTTC 59.000 47.826 0.00 0.00 0.00 2.62
5946 8042 4.262851 GGCTGTCTTTCTCCTTCTCTTTCT 60.263 45.833 0.00 0.00 0.00 2.52
5947 8043 5.304778 GCTGTCTTTCTCCTTCTCTTTCTT 58.695 41.667 0.00 0.00 0.00 2.52
5948 8044 5.179182 GCTGTCTTTCTCCTTCTCTTTCTTG 59.821 44.000 0.00 0.00 0.00 3.02
5949 8045 6.240549 TGTCTTTCTCCTTCTCTTTCTTGT 57.759 37.500 0.00 0.00 0.00 3.16
5950 8046 6.051717 TGTCTTTCTCCTTCTCTTTCTTGTG 58.948 40.000 0.00 0.00 0.00 3.33
5951 8047 5.049749 GTCTTTCTCCTTCTCTTTCTTGTGC 60.050 44.000 0.00 0.00 0.00 4.57
5952 8048 4.696479 TTCTCCTTCTCTTTCTTGTGCT 57.304 40.909 0.00 0.00 0.00 4.40
5953 8049 4.696479 TCTCCTTCTCTTTCTTGTGCTT 57.304 40.909 0.00 0.00 0.00 3.91
5954 8050 5.041191 TCTCCTTCTCTTTCTTGTGCTTT 57.959 39.130 0.00 0.00 0.00 3.51
5955 8051 6.174720 TCTCCTTCTCTTTCTTGTGCTTTA 57.825 37.500 0.00 0.00 0.00 1.85
5956 8052 6.226787 TCTCCTTCTCTTTCTTGTGCTTTAG 58.773 40.000 0.00 0.00 0.00 1.85
5957 8053 5.308825 TCCTTCTCTTTCTTGTGCTTTAGG 58.691 41.667 0.00 0.00 0.00 2.69
5958 8054 5.066593 CCTTCTCTTTCTTGTGCTTTAGGT 58.933 41.667 0.00 0.00 0.00 3.08
5959 8055 5.180304 CCTTCTCTTTCTTGTGCTTTAGGTC 59.820 44.000 0.00 0.00 0.00 3.85
5960 8056 4.642429 TCTCTTTCTTGTGCTTTAGGTCC 58.358 43.478 0.00 0.00 0.00 4.46
5961 8057 3.751518 TCTTTCTTGTGCTTTAGGTCCC 58.248 45.455 0.00 0.00 0.00 4.46
5962 8058 2.579410 TTCTTGTGCTTTAGGTCCCC 57.421 50.000 0.00 0.00 0.00 4.81
5963 8059 0.696501 TCTTGTGCTTTAGGTCCCCC 59.303 55.000 0.00 0.00 0.00 5.40
5998 8094 9.149225 TCCATTTTCGTTTTTAATCCATGAATG 57.851 29.630 0.00 0.00 0.00 2.67
6005 8101 9.757227 TCGTTTTTAATCCATGAATGTTCTTTT 57.243 25.926 0.00 0.00 0.00 2.27
6106 8296 9.303537 CAACTTTTTGCAAATTCATTTTCCAAT 57.696 25.926 13.65 0.00 0.00 3.16
6270 10134 3.499918 CACCAGGAGTTGTGAGATTTGTC 59.500 47.826 0.00 0.00 34.37 3.18
6298 10162 8.675504 ACTATAGTGTGTCTATGTTGTGTACTC 58.324 37.037 4.10 0.00 39.42 2.59
6395 10260 1.774300 GTTCAATGGTGGGGGTCCT 59.226 57.895 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.174783 GTCTGTTCCACGCTAGGAGA 58.825 55.000 0.00 0.00 39.25 3.71
43 44 3.854666 CCATTCTACCTGTGTCTGTCTG 58.145 50.000 0.00 0.00 0.00 3.51
50 51 1.078426 GCCGCCATTCTACCTGTGT 60.078 57.895 0.00 0.00 0.00 3.72
55 56 2.119029 GTTGGGCCGCCATTCTACC 61.119 63.158 12.58 0.00 0.00 3.18
148 149 7.416964 AAGTAGATTATCCTAGCTAGCATGG 57.583 40.000 18.83 17.69 0.00 3.66
149 150 9.796120 GTAAAGTAGATTATCCTAGCTAGCATG 57.204 37.037 18.83 8.75 0.00 4.06
292 296 1.593196 TTTTCCCTTCACTCGCACAG 58.407 50.000 0.00 0.00 0.00 3.66
308 312 6.405286 CCTCAGAGTCAGTCTATCACGATTTT 60.405 42.308 0.00 0.00 32.51 1.82
318 322 0.704664 TGCCCCTCAGAGTCAGTCTA 59.295 55.000 0.00 0.00 32.51 2.59
319 323 0.042431 ATGCCCCTCAGAGTCAGTCT 59.958 55.000 0.00 0.00 35.00 3.24
321 325 1.786937 CTATGCCCCTCAGAGTCAGT 58.213 55.000 0.00 0.00 29.68 3.41
323 327 0.031716 AGCTATGCCCCTCAGAGTCA 60.032 55.000 0.00 0.00 36.43 3.41
324 328 0.678950 GAGCTATGCCCCTCAGAGTC 59.321 60.000 0.00 0.00 36.43 3.36
329 333 0.975556 TCAACGAGCTATGCCCCTCA 60.976 55.000 0.00 0.00 0.00 3.86
333 337 0.392461 TGGTTCAACGAGCTATGCCC 60.392 55.000 0.00 0.00 0.00 5.36
346 350 0.958091 CCATTTCGCCTTGTGGTTCA 59.042 50.000 0.00 0.00 35.27 3.18
362 367 5.843019 TTTCTGAGTCCCTCTTTTACCAT 57.157 39.130 0.00 0.00 0.00 3.55
363 368 5.548056 AGATTTCTGAGTCCCTCTTTTACCA 59.452 40.000 0.00 0.00 0.00 3.25
380 385 2.158325 TGGTTTGCCCTTGGAGATTTCT 60.158 45.455 0.00 0.00 0.00 2.52
390 395 2.086610 ATGTCTGTTGGTTTGCCCTT 57.913 45.000 0.00 0.00 0.00 3.95
396 401 6.426937 GTGTACATGTCTATGTCTGTTGGTTT 59.573 38.462 0.00 0.00 44.00 3.27
473 517 6.381801 AGAAAAATAATTTCACACCGCTCAG 58.618 36.000 4.01 0.00 0.00 3.35
474 518 6.325919 AGAAAAATAATTTCACACCGCTCA 57.674 33.333 4.01 0.00 0.00 4.26
477 521 6.033966 CCCTAGAAAAATAATTTCACACCGC 58.966 40.000 0.00 0.00 0.00 5.68
478 522 6.033966 GCCCTAGAAAAATAATTTCACACCG 58.966 40.000 0.00 0.00 0.00 4.94
479 523 6.033966 CGCCCTAGAAAAATAATTTCACACC 58.966 40.000 0.00 0.00 0.00 4.16
480 524 6.033966 CCGCCCTAGAAAAATAATTTCACAC 58.966 40.000 0.00 0.00 0.00 3.82
481 525 5.126384 CCCGCCCTAGAAAAATAATTTCACA 59.874 40.000 0.00 0.00 0.00 3.58
482 526 5.358725 TCCCGCCCTAGAAAAATAATTTCAC 59.641 40.000 0.00 0.00 0.00 3.18
483 527 5.511363 TCCCGCCCTAGAAAAATAATTTCA 58.489 37.500 0.00 0.00 0.00 2.69
484 528 5.826208 TCTCCCGCCCTAGAAAAATAATTTC 59.174 40.000 0.00 0.00 0.00 2.17
488 532 4.847990 TTCTCCCGCCCTAGAAAAATAA 57.152 40.909 0.00 0.00 0.00 1.40
489 533 4.445735 CCATTCTCCCGCCCTAGAAAAATA 60.446 45.833 0.00 0.00 35.47 1.40
547 592 1.931551 CTGTGTGTGAACGGGTTCG 59.068 57.895 7.03 0.00 42.28 3.95
549 594 0.678366 TTGCTGTGTGTGAACGGGTT 60.678 50.000 0.00 0.00 0.00 4.11
550 595 1.078072 TTGCTGTGTGTGAACGGGT 60.078 52.632 0.00 0.00 0.00 5.28
555 600 1.987704 GCACCGTTGCTGTGTGTGAA 61.988 55.000 0.00 0.00 46.17 3.18
556 601 2.468670 GCACCGTTGCTGTGTGTGA 61.469 57.895 0.00 0.00 46.17 3.58
601 715 1.861542 TTGTTTGGATTGGAGCCGCG 61.862 55.000 0.00 0.00 0.00 6.46
612 735 1.952621 TTGGGTTTGGGTTGTTTGGA 58.047 45.000 0.00 0.00 0.00 3.53
616 739 2.482494 TGGATTTGGGTTTGGGTTGTT 58.518 42.857 0.00 0.00 0.00 2.83
762 918 2.840038 AGAGAGAGAGAGAGAGAGCACA 59.160 50.000 0.00 0.00 0.00 4.57
763 919 3.133721 AGAGAGAGAGAGAGAGAGAGCAC 59.866 52.174 0.00 0.00 0.00 4.40
764 920 3.378512 AGAGAGAGAGAGAGAGAGAGCA 58.621 50.000 0.00 0.00 0.00 4.26
765 921 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
767 923 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
869 1936 2.675348 CTCCTTGAATGAAAGAGTCGCC 59.325 50.000 0.00 0.00 0.00 5.54
881 1948 1.283321 GAGCAACTCCCCTCCTTGAAT 59.717 52.381 0.00 0.00 0.00 2.57
897 1964 2.479389 CGGAAAACAAGTTTGCAGAGCA 60.479 45.455 6.04 0.00 37.40 4.26
898 1965 2.119457 CGGAAAACAAGTTTGCAGAGC 58.881 47.619 6.04 0.00 37.40 4.09
899 1966 2.731217 CCGGAAAACAAGTTTGCAGAG 58.269 47.619 0.00 0.00 37.40 3.35
900 1967 1.202359 GCCGGAAAACAAGTTTGCAGA 60.202 47.619 5.05 0.00 37.40 4.26
901 1968 1.208259 GCCGGAAAACAAGTTTGCAG 58.792 50.000 5.05 1.85 37.40 4.41
902 1969 0.526524 CGCCGGAAAACAAGTTTGCA 60.527 50.000 5.05 0.00 37.40 4.08
903 1970 0.248702 TCGCCGGAAAACAAGTTTGC 60.249 50.000 5.05 0.00 34.37 3.68
904 1971 1.064952 AGTCGCCGGAAAACAAGTTTG 59.935 47.619 5.05 0.00 32.36 2.93
905 1972 1.332686 GAGTCGCCGGAAAACAAGTTT 59.667 47.619 5.05 0.00 0.00 2.66
906 1973 0.942252 GAGTCGCCGGAAAACAAGTT 59.058 50.000 5.05 0.00 0.00 2.66
907 1974 0.106149 AGAGTCGCCGGAAAACAAGT 59.894 50.000 5.05 0.00 0.00 3.16
908 1975 1.226746 AAGAGTCGCCGGAAAACAAG 58.773 50.000 5.05 0.00 0.00 3.16
909 1976 1.600485 GAAAGAGTCGCCGGAAAACAA 59.400 47.619 5.05 0.00 0.00 2.83
910 1977 1.223187 GAAAGAGTCGCCGGAAAACA 58.777 50.000 5.05 0.00 0.00 2.83
911 1978 1.223187 TGAAAGAGTCGCCGGAAAAC 58.777 50.000 5.05 0.00 0.00 2.43
912 1979 2.178912 ATGAAAGAGTCGCCGGAAAA 57.821 45.000 5.05 0.00 0.00 2.29
913 1980 2.073816 GAATGAAAGAGTCGCCGGAAA 58.926 47.619 5.05 0.00 0.00 3.13
914 1981 1.001520 TGAATGAAAGAGTCGCCGGAA 59.998 47.619 5.05 0.00 0.00 4.30
915 1982 0.606096 TGAATGAAAGAGTCGCCGGA 59.394 50.000 5.05 0.00 0.00 5.14
916 1983 1.128692 GTTGAATGAAAGAGTCGCCGG 59.871 52.381 0.00 0.00 0.00 6.13
917 1984 1.201812 CGTTGAATGAAAGAGTCGCCG 60.202 52.381 0.00 0.00 0.00 6.46
918 1985 2.066262 TCGTTGAATGAAAGAGTCGCC 58.934 47.619 0.00 0.00 0.00 5.54
919 1986 2.092838 CCTCGTTGAATGAAAGAGTCGC 59.907 50.000 0.00 0.00 38.21 5.19
920 1987 2.668457 CCCTCGTTGAATGAAAGAGTCG 59.332 50.000 0.00 0.00 38.21 4.18
921 1988 3.003480 CCCCTCGTTGAATGAAAGAGTC 58.997 50.000 0.00 0.00 38.21 3.36
922 1989 2.637872 TCCCCTCGTTGAATGAAAGAGT 59.362 45.455 0.00 0.00 38.21 3.24
923 1990 3.265791 CTCCCCTCGTTGAATGAAAGAG 58.734 50.000 0.00 0.00 39.24 2.85
924 1991 2.637872 ACTCCCCTCGTTGAATGAAAGA 59.362 45.455 0.00 0.00 0.00 2.52
925 1992 3.059352 ACTCCCCTCGTTGAATGAAAG 57.941 47.619 0.00 0.00 0.00 2.62
926 1993 3.146066 CAACTCCCCTCGTTGAATGAAA 58.854 45.455 0.00 0.00 43.28 2.69
927 1994 2.370519 TCAACTCCCCTCGTTGAATGAA 59.629 45.455 3.38 0.00 45.39 2.57
928 1995 1.974957 TCAACTCCCCTCGTTGAATGA 59.025 47.619 3.38 0.00 45.39 2.57
929 1996 2.472695 TCAACTCCCCTCGTTGAATG 57.527 50.000 3.38 0.00 45.39 2.67
933 2000 3.024547 TCTCTATCAACTCCCCTCGTTG 58.975 50.000 0.00 0.00 42.27 4.10
934 2001 3.025262 GTCTCTATCAACTCCCCTCGTT 58.975 50.000 0.00 0.00 0.00 3.85
935 2002 2.025226 TGTCTCTATCAACTCCCCTCGT 60.025 50.000 0.00 0.00 0.00 4.18
936 2003 2.656002 TGTCTCTATCAACTCCCCTCG 58.344 52.381 0.00 0.00 0.00 4.63
937 2004 4.280677 CAGATGTCTCTATCAACTCCCCTC 59.719 50.000 0.00 0.00 0.00 4.30
938 2005 4.078922 TCAGATGTCTCTATCAACTCCCCT 60.079 45.833 0.00 0.00 0.00 4.79
939 2006 4.219115 TCAGATGTCTCTATCAACTCCCC 58.781 47.826 0.00 0.00 0.00 4.81
940 2007 5.136828 TCTCAGATGTCTCTATCAACTCCC 58.863 45.833 0.00 0.00 0.00 4.30
941 2008 6.096141 TGTTCTCAGATGTCTCTATCAACTCC 59.904 42.308 0.00 0.00 0.00 3.85
942 2009 7.094508 TGTTCTCAGATGTCTCTATCAACTC 57.905 40.000 0.00 0.00 0.00 3.01
943 2010 7.658525 ATGTTCTCAGATGTCTCTATCAACT 57.341 36.000 0.00 0.00 0.00 3.16
944 2011 8.629158 ACTATGTTCTCAGATGTCTCTATCAAC 58.371 37.037 0.00 0.00 0.00 3.18
945 2012 8.759481 ACTATGTTCTCAGATGTCTCTATCAA 57.241 34.615 0.00 0.00 0.00 2.57
946 2013 7.446931 GGACTATGTTCTCAGATGTCTCTATCA 59.553 40.741 0.00 0.00 0.00 2.15
959 2026 1.207089 CCGCCTTGGACTATGTTCTCA 59.793 52.381 0.00 0.00 42.00 3.27
1697 3163 6.289745 CCATTTCTTGTGGTTGTTTTGATG 57.710 37.500 0.00 0.00 31.96 3.07
2212 3679 3.507162 ATCCCAATGTCGCCATCATTA 57.493 42.857 0.00 0.00 34.34 1.90
2542 4017 1.213430 TCTTCCCGGTTCCTGTTTGTT 59.787 47.619 0.00 0.00 0.00 2.83
2597 4072 7.279750 CTCCTCCAGAGTTCTATAGTTTACC 57.720 44.000 0.00 0.00 37.87 2.85
3478 4981 2.783135 TCCAGAGCAACAAACAGATCC 58.217 47.619 0.00 0.00 0.00 3.36
3608 5112 1.203505 TCCAATCCCCTCCTGTTACCA 60.204 52.381 0.00 0.00 0.00 3.25
3626 5130 2.298729 TGCACAAACATTAGGGCTTTCC 59.701 45.455 0.00 0.00 0.00 3.13
3675 5179 4.877323 GTTCAACGAACTCAAGGTTTCT 57.123 40.909 0.00 0.00 39.23 2.52
3717 5221 0.034186 TTGCTGGGCCCAGTTCTATG 60.034 55.000 44.45 24.91 45.24 2.23
3757 5261 5.452356 CCATCTGTTTGACCTTTTGAAGCTT 60.452 40.000 0.00 0.00 0.00 3.74
4052 5563 6.944862 AGCCTAGAAGAATCAACACAAGATTT 59.055 34.615 0.00 0.00 35.93 2.17
5638 7488 5.127693 ACAGACAAGTCAGTCATCACTAC 57.872 43.478 2.72 0.00 40.98 2.73
5707 7580 5.322754 ACTCTGCAGTAAGTACCAAGTAGA 58.677 41.667 14.67 0.00 0.00 2.59
5769 7865 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5770 7866 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5771 7867 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5772 7868 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5773 7869 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5774 7870 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5776 7872 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5777 7873 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5779 7875 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5780 7876 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5781 7877 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5782 7878 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5783 7879 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5785 7881 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5786 7882 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5787 7883 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5788 7884 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5789 7885 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5790 7886 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5791 7887 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5792 7888 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5793 7889 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5794 7890 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5795 7891 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5796 7892 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5797 7893 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5798 7894 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5799 7895 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5800 7896 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5801 7897 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5833 7929 0.102663 GGAGAGGCGCCAAGTAGTAC 59.897 60.000 31.54 10.25 0.00 2.73
5839 7935 2.186384 CAGAGGAGAGGCGCCAAG 59.814 66.667 31.54 4.59 0.00 3.61
5840 7936 2.604686 ACAGAGGAGAGGCGCCAA 60.605 61.111 31.54 0.00 0.00 4.52
5841 7937 3.071206 GACAGAGGAGAGGCGCCA 61.071 66.667 31.54 0.00 0.00 5.69
5842 7938 3.071206 TGACAGAGGAGAGGCGCC 61.071 66.667 21.89 21.89 0.00 6.53
5843 7939 2.159819 TTGTGACAGAGGAGAGGCGC 62.160 60.000 0.00 0.00 0.00 6.53
5844 7940 0.108898 CTTGTGACAGAGGAGAGGCG 60.109 60.000 0.00 0.00 0.00 5.52
5845 7941 1.261480 TCTTGTGACAGAGGAGAGGC 58.739 55.000 0.00 0.00 0.00 4.70
5846 7942 3.576118 TCTTTCTTGTGACAGAGGAGAGG 59.424 47.826 3.09 0.00 0.00 3.69
5847 7943 4.808558 CTCTTTCTTGTGACAGAGGAGAG 58.191 47.826 0.00 0.00 41.18 3.20
5848 7944 3.006323 GCTCTTTCTTGTGACAGAGGAGA 59.994 47.826 10.10 0.00 43.62 3.71
5849 7945 3.244009 TGCTCTTTCTTGTGACAGAGGAG 60.244 47.826 10.10 1.97 43.62 3.69
5850 7946 2.700371 TGCTCTTTCTTGTGACAGAGGA 59.300 45.455 10.10 5.61 43.62 3.71
5851 7947 3.117491 TGCTCTTTCTTGTGACAGAGG 57.883 47.619 10.10 0.00 43.62 3.69
5852 7948 3.873361 TGTTGCTCTTTCTTGTGACAGAG 59.127 43.478 5.21 5.21 45.24 3.35
5853 7949 3.872696 TGTTGCTCTTTCTTGTGACAGA 58.127 40.909 0.00 0.00 0.00 3.41
5854 7950 4.621068 TTGTTGCTCTTTCTTGTGACAG 57.379 40.909 0.00 0.00 0.00 3.51
5855 7951 5.160641 GTTTTGTTGCTCTTTCTTGTGACA 58.839 37.500 0.00 0.00 0.00 3.58
5856 7952 5.160641 TGTTTTGTTGCTCTTTCTTGTGAC 58.839 37.500 0.00 0.00 0.00 3.67
5857 7953 5.384063 TGTTTTGTTGCTCTTTCTTGTGA 57.616 34.783 0.00 0.00 0.00 3.58
5858 7954 7.115378 GGATATGTTTTGTTGCTCTTTCTTGTG 59.885 37.037 0.00 0.00 0.00 3.33
5859 7955 7.147976 GGATATGTTTTGTTGCTCTTTCTTGT 58.852 34.615 0.00 0.00 0.00 3.16
5860 7956 7.115378 GTGGATATGTTTTGTTGCTCTTTCTTG 59.885 37.037 0.00 0.00 0.00 3.02
5861 7957 7.147976 GTGGATATGTTTTGTTGCTCTTTCTT 58.852 34.615 0.00 0.00 0.00 2.52
5862 7958 6.265196 TGTGGATATGTTTTGTTGCTCTTTCT 59.735 34.615 0.00 0.00 0.00 2.52
5863 7959 6.446318 TGTGGATATGTTTTGTTGCTCTTTC 58.554 36.000 0.00 0.00 0.00 2.62
5864 7960 6.403866 TGTGGATATGTTTTGTTGCTCTTT 57.596 33.333 0.00 0.00 0.00 2.52
5865 7961 6.183360 TGTTGTGGATATGTTTTGTTGCTCTT 60.183 34.615 0.00 0.00 0.00 2.85
5866 7962 5.301551 TGTTGTGGATATGTTTTGTTGCTCT 59.698 36.000 0.00 0.00 0.00 4.09
5867 7963 5.527951 TGTTGTGGATATGTTTTGTTGCTC 58.472 37.500 0.00 0.00 0.00 4.26
5868 7964 5.528043 TGTTGTGGATATGTTTTGTTGCT 57.472 34.783 0.00 0.00 0.00 3.91
5869 7965 7.062138 CACTATGTTGTGGATATGTTTTGTTGC 59.938 37.037 0.00 0.00 34.56 4.17
5870 7966 8.081633 ACACTATGTTGTGGATATGTTTTGTTG 58.918 33.333 0.00 0.00 41.84 3.33
5871 7967 8.177119 ACACTATGTTGTGGATATGTTTTGTT 57.823 30.769 0.00 0.00 41.84 2.83
5872 7968 7.665559 AGACACTATGTTGTGGATATGTTTTGT 59.334 33.333 0.00 0.00 41.84 2.83
5873 7969 8.044060 AGACACTATGTTGTGGATATGTTTTG 57.956 34.615 0.00 0.00 41.84 2.44
5874 7970 9.905713 ATAGACACTATGTTGTGGATATGTTTT 57.094 29.630 0.00 0.00 41.84 2.43
5875 7971 9.330063 CATAGACACTATGTTGTGGATATGTTT 57.670 33.333 9.71 0.00 41.84 2.83
5876 7972 8.486210 ACATAGACACTATGTTGTGGATATGTT 58.514 33.333 15.73 6.22 43.23 2.71
5877 7973 8.023021 ACATAGACACTATGTTGTGGATATGT 57.977 34.615 15.73 15.00 42.27 2.29
5878 7974 8.893219 AACATAGACACTATGTTGTGGATATG 57.107 34.615 25.94 8.86 43.92 1.78
5879 7975 8.928448 AGAACATAGACACTATGTTGTGGATAT 58.072 33.333 29.34 12.47 45.10 1.63
5880 7976 8.197439 CAGAACATAGACACTATGTTGTGGATA 58.803 37.037 31.30 1.97 46.51 2.59
5881 7977 7.044181 CAGAACATAGACACTATGTTGTGGAT 58.956 38.462 31.30 16.50 46.51 3.41
5882 7978 6.398095 CAGAACATAGACACTATGTTGTGGA 58.602 40.000 31.30 0.00 46.51 4.02
5883 7979 6.653273 CAGAACATAGACACTATGTTGTGG 57.347 41.667 31.30 21.57 46.51 4.17
5885 7981 6.360370 ACCAGAACATAGACACTATGTTGT 57.640 37.500 29.34 24.95 45.10 3.32
5886 7982 7.148407 GGAAACCAGAACATAGACACTATGTTG 60.148 40.741 29.34 20.77 45.10 3.33
5887 7983 6.879458 GGAAACCAGAACATAGACACTATGTT 59.121 38.462 26.49 26.49 46.99 2.71
5888 7984 6.213600 AGGAAACCAGAACATAGACACTATGT 59.786 38.462 15.73 15.73 39.60 2.29
5889 7985 6.644347 AGGAAACCAGAACATAGACACTATG 58.356 40.000 14.64 14.64 0.00 2.23
5890 7986 6.875972 AGGAAACCAGAACATAGACACTAT 57.124 37.500 0.00 0.00 0.00 2.12
5891 7987 6.681729 AAGGAAACCAGAACATAGACACTA 57.318 37.500 0.00 0.00 0.00 2.74
5892 7988 5.568620 AAGGAAACCAGAACATAGACACT 57.431 39.130 0.00 0.00 0.00 3.55
5893 7989 6.128254 GCTTAAGGAAACCAGAACATAGACAC 60.128 42.308 4.29 0.00 0.00 3.67
5894 7990 5.938125 GCTTAAGGAAACCAGAACATAGACA 59.062 40.000 4.29 0.00 0.00 3.41
5895 7991 6.174049 AGCTTAAGGAAACCAGAACATAGAC 58.826 40.000 4.29 0.00 0.00 2.59
5896 7992 6.374417 AGCTTAAGGAAACCAGAACATAGA 57.626 37.500 4.29 0.00 0.00 1.98
5897 7993 6.623767 GCAAGCTTAAGGAAACCAGAACATAG 60.624 42.308 0.00 0.00 0.00 2.23
5898 7994 5.183140 GCAAGCTTAAGGAAACCAGAACATA 59.817 40.000 0.00 0.00 0.00 2.29
5899 7995 4.021981 GCAAGCTTAAGGAAACCAGAACAT 60.022 41.667 0.00 0.00 0.00 2.71
5900 7996 3.317993 GCAAGCTTAAGGAAACCAGAACA 59.682 43.478 0.00 0.00 0.00 3.18
5901 7997 3.609409 CGCAAGCTTAAGGAAACCAGAAC 60.609 47.826 0.00 0.00 0.00 3.01
5902 7998 2.552315 CGCAAGCTTAAGGAAACCAGAA 59.448 45.455 0.00 0.00 0.00 3.02
5903 7999 2.151202 CGCAAGCTTAAGGAAACCAGA 58.849 47.619 0.00 0.00 0.00 3.86
5904 8000 1.200020 CCGCAAGCTTAAGGAAACCAG 59.800 52.381 12.61 0.00 0.00 4.00
5905 8001 1.243902 CCGCAAGCTTAAGGAAACCA 58.756 50.000 12.61 0.00 0.00 3.67
5906 8002 0.109272 GCCGCAAGCTTAAGGAAACC 60.109 55.000 19.94 2.31 38.99 3.27
5907 8003 3.401577 GCCGCAAGCTTAAGGAAAC 57.598 52.632 19.94 2.61 38.99 2.78
5917 8013 1.499502 GAGAAAGACAGCCGCAAGC 59.500 57.895 0.00 0.00 44.25 4.01
5918 8014 0.321122 AGGAGAAAGACAGCCGCAAG 60.321 55.000 0.00 0.00 0.00 4.01
5919 8015 0.108585 AAGGAGAAAGACAGCCGCAA 59.891 50.000 0.00 0.00 0.00 4.85
5920 8016 0.320771 GAAGGAGAAAGACAGCCGCA 60.321 55.000 0.00 0.00 0.00 5.69
5921 8017 0.036858 AGAAGGAGAAAGACAGCCGC 60.037 55.000 0.00 0.00 0.00 6.53
5922 8018 1.548269 AGAGAAGGAGAAAGACAGCCG 59.452 52.381 0.00 0.00 0.00 5.52
5923 8019 3.694043 AAGAGAAGGAGAAAGACAGCC 57.306 47.619 0.00 0.00 0.00 4.85
5924 8020 4.893608 AGAAAGAGAAGGAGAAAGACAGC 58.106 43.478 0.00 0.00 0.00 4.40
5925 8021 6.202570 CACAAGAAAGAGAAGGAGAAAGACAG 59.797 42.308 0.00 0.00 0.00 3.51
5926 8022 6.051717 CACAAGAAAGAGAAGGAGAAAGACA 58.948 40.000 0.00 0.00 0.00 3.41
5927 8023 5.049749 GCACAAGAAAGAGAAGGAGAAAGAC 60.050 44.000 0.00 0.00 0.00 3.01
5928 8024 5.059833 GCACAAGAAAGAGAAGGAGAAAGA 58.940 41.667 0.00 0.00 0.00 2.52
5929 8025 5.062528 AGCACAAGAAAGAGAAGGAGAAAG 58.937 41.667 0.00 0.00 0.00 2.62
5930 8026 5.041191 AGCACAAGAAAGAGAAGGAGAAA 57.959 39.130 0.00 0.00 0.00 2.52
5931 8027 4.696479 AGCACAAGAAAGAGAAGGAGAA 57.304 40.909 0.00 0.00 0.00 2.87
5932 8028 4.696479 AAGCACAAGAAAGAGAAGGAGA 57.304 40.909 0.00 0.00 0.00 3.71
5933 8029 5.411053 CCTAAAGCACAAGAAAGAGAAGGAG 59.589 44.000 0.00 0.00 0.00 3.69
5934 8030 5.163195 ACCTAAAGCACAAGAAAGAGAAGGA 60.163 40.000 0.00 0.00 0.00 3.36
5935 8031 5.066593 ACCTAAAGCACAAGAAAGAGAAGG 58.933 41.667 0.00 0.00 0.00 3.46
5936 8032 5.180304 GGACCTAAAGCACAAGAAAGAGAAG 59.820 44.000 0.00 0.00 0.00 2.85
5937 8033 5.063880 GGACCTAAAGCACAAGAAAGAGAA 58.936 41.667 0.00 0.00 0.00 2.87
5938 8034 4.505039 GGGACCTAAAGCACAAGAAAGAGA 60.505 45.833 0.00 0.00 0.00 3.10
5939 8035 3.753797 GGGACCTAAAGCACAAGAAAGAG 59.246 47.826 0.00 0.00 0.00 2.85
5940 8036 3.751518 GGGACCTAAAGCACAAGAAAGA 58.248 45.455 0.00 0.00 0.00 2.52
6133 8323 9.271828 ACAAAATTGAAATACAAAACCATCCTC 57.728 29.630 0.00 0.00 42.03 3.71
6270 10134 9.932699 GTACACAACATAGACACACTATAGTAG 57.067 37.037 4.74 4.07 39.50 2.57
6298 10162 1.225376 TTGACGGCCGCAAACACTAG 61.225 55.000 28.58 0.00 0.00 2.57
6368 10233 3.195396 CCCCACCATTGAACCAACTTATG 59.805 47.826 0.00 0.00 0.00 1.90
6369 10234 3.440127 CCCCACCATTGAACCAACTTAT 58.560 45.455 0.00 0.00 0.00 1.73
6395 10260 5.104776 AGGCAGAGCTATGTGTTAAGATGAA 60.105 40.000 10.55 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.