Multiple sequence alignment - TraesCS5A01G488900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G488900 chr5A 100.000 8783 0 0 1 8783 659139114 659130332 0.000000e+00 16220.0
1 TraesCS5A01G488900 chr5A 96.577 3301 94 10 2934 6227 105422005 105425293 0.000000e+00 5452.0
2 TraesCS5A01G488900 chr5A 92.424 1386 84 6 3131 4499 567115183 567116564 0.000000e+00 1958.0
3 TraesCS5A01G488900 chr5A 88.094 1453 38 40 952 2366 709674442 709675797 0.000000e+00 1600.0
4 TraesCS5A01G488900 chr5A 88.017 1452 28 33 952 2366 707821644 707820302 0.000000e+00 1583.0
5 TraesCS5A01G488900 chr5A 93.621 1019 50 6 6228 7239 105425325 105426335 0.000000e+00 1507.0
6 TraesCS5A01G488900 chr5A 96.871 831 10 5 7237 8059 707819883 707819061 0.000000e+00 1376.0
7 TraesCS5A01G488900 chr5A 97.519 806 6 3 7237 8036 709676216 709677013 0.000000e+00 1365.0
8 TraesCS5A01G488900 chr5A 97.111 727 8 2 8062 8783 709677316 709678034 0.000000e+00 1214.0
9 TraesCS5A01G488900 chr5A 94.408 304 5 3 2364 2655 709675913 709676216 2.890000e-124 457.0
10 TraesCS5A01G488900 chr5A 94.352 301 5 3 2367 2655 707820183 707819883 1.340000e-122 451.0
11 TraesCS5A01G488900 chr5A 96.043 278 7 3 440 713 707821994 707821717 4.840000e-122 449.0
12 TraesCS5A01G488900 chr5A 91.289 287 22 2 2657 2942 105420454 105420738 1.070000e-103 388.0
13 TraesCS5A01G488900 chr5A 93.820 178 10 1 598 775 709672735 709672911 5.230000e-67 267.0
14 TraesCS5A01G488900 chr5A 94.737 152 5 2 2983 3132 567114994 567115144 5.300000e-57 233.0
15 TraesCS5A01G488900 chr4A 96.516 3301 84 9 2934 6227 684055225 684058501 0.000000e+00 5430.0
16 TraesCS5A01G488900 chr4A 96.457 3302 85 9 2934 6227 684028768 684032045 0.000000e+00 5421.0
17 TraesCS5A01G488900 chr4A 93.609 1017 53 4 6228 7239 684058533 684059542 0.000000e+00 1507.0
18 TraesCS5A01G488900 chr4A 93.425 1019 54 4 6228 7239 684032077 684033089 0.000000e+00 1498.0
19 TraesCS5A01G488900 chr4A 90.837 1135 79 5 3131 4256 737374262 737375380 0.000000e+00 1496.0
20 TraesCS5A01G488900 chr4A 88.209 670 46 15 5572 6227 737378155 737378805 0.000000e+00 769.0
21 TraesCS5A01G488900 chr4A 86.202 674 60 18 6228 6882 737378837 737379496 0.000000e+00 699.0
22 TraesCS5A01G488900 chr4A 91.289 287 22 2 2657 2942 684053674 684053958 1.070000e-103 388.0
23 TraesCS5A01G488900 chr4A 90.941 287 23 2 2657 2942 684027217 684027501 4.970000e-102 383.0
24 TraesCS5A01G488900 chr4A 87.712 236 25 3 2702 2936 737372901 737373133 1.120000e-68 272.0
25 TraesCS5A01G488900 chr4A 88.764 178 15 5 1590 1766 743591688 743591515 6.910000e-51 213.0
26 TraesCS5A01G488900 chr4A 81.223 229 22 4 7317 7545 621470887 621470680 1.960000e-36 165.0
27 TraesCS5A01G488900 chr2A 97.243 2612 64 7 2934 5539 705323364 705325973 0.000000e+00 4418.0
28 TraesCS5A01G488900 chr2A 93.719 1019 50 6 6228 7239 705338629 705339640 0.000000e+00 1515.0
29 TraesCS5A01G488900 chr2A 94.360 656 26 3 5572 6227 705337953 705338597 0.000000e+00 996.0
30 TraesCS5A01G488900 chr2A 92.440 291 18 3 2653 2942 705321995 705322282 6.340000e-111 412.0
31 TraesCS5A01G488900 chr2A 89.091 55 6 0 809 863 338522259 338522313 1.580000e-07 69.4
32 TraesCS5A01G488900 chr3A 96.397 1804 51 5 4425 6227 199136747 199134957 0.000000e+00 2959.0
33 TraesCS5A01G488900 chr3A 96.738 1502 40 8 2934 4428 199138326 199136827 0.000000e+00 2494.0
34 TraesCS5A01G488900 chr3A 93.157 1023 57 4 6228 7243 199134925 199133909 0.000000e+00 1489.0
35 TraesCS5A01G488900 chr3A 89.796 441 37 2 4882 5321 414410354 414410787 7.700000e-155 558.0
36 TraesCS5A01G488900 chr3A 91.638 287 21 2 2657 2942 199139880 199139596 2.300000e-105 394.0
37 TraesCS5A01G488900 chr3A 97.826 46 1 0 2657 2702 54458599 54458554 7.310000e-11 80.5
38 TraesCS5A01G488900 chr1A 97.137 1502 35 6 3501 4996 15371886 15370387 0.000000e+00 2529.0
39 TraesCS5A01G488900 chr1A 92.643 1033 49 6 6228 7239 15356978 15355952 0.000000e+00 1461.0
40 TraesCS5A01G488900 chr1A 96.986 730 22 0 4991 5720 15368591 15367862 0.000000e+00 1227.0
41 TraesCS5A01G488900 chr1A 94.942 514 15 3 5714 6227 15357512 15357010 0.000000e+00 795.0
42 TraesCS5A01G488900 chr1A 93.640 283 16 1 2657 2939 15373814 15373534 1.050000e-113 422.0
43 TraesCS5A01G488900 chr1A 92.157 51 2 2 815 865 489235876 489235924 4.400000e-08 71.3
44 TraesCS5A01G488900 chrUn 96.450 1521 37 3 3804 5321 393661883 393663389 0.000000e+00 2494.0
45 TraesCS5A01G488900 chrUn 95.606 1138 11 5 7237 8342 100171810 100170680 0.000000e+00 1788.0
46 TraesCS5A01G488900 chrUn 93.780 820 19 11 1566 2366 100173025 100172219 0.000000e+00 1203.0
47 TraesCS5A01G488900 chrUn 95.701 628 19 1 5276 5903 471965609 471964990 0.000000e+00 1003.0
48 TraesCS5A01G488900 chrUn 87.315 473 5 19 8339 8783 100170539 100170094 2.850000e-134 490.0
49 TraesCS5A01G488900 chrUn 95.033 302 4 2 2364 2655 100172110 100171810 1.730000e-126 464.0
50 TraesCS5A01G488900 chrUn 90.828 338 11 14 1189 1525 100173330 100173012 1.350000e-117 435.0
51 TraesCS5A01G488900 chrUn 83.333 132 4 7 952 1071 100173453 100173328 1.210000e-18 106.0
52 TraesCS5A01G488900 chrUn 87.500 64 2 3 902 959 100173524 100173461 1.580000e-07 69.4
53 TraesCS5A01G488900 chr7D 93.362 1386 74 5 3131 4499 118443788 118442404 0.000000e+00 2034.0
54 TraesCS5A01G488900 chr7D 89.390 377 29 3 5572 5945 610557034 610557402 1.730000e-126 464.0
55 TraesCS5A01G488900 chr7D 95.395 152 4 2 2983 3132 118443977 118443827 1.140000e-58 239.0
56 TraesCS5A01G488900 chr7D 95.556 45 2 0 2657 2701 110895854 110895898 1.220000e-08 73.1
57 TraesCS5A01G488900 chr6D 91.126 1386 79 15 3131 4499 432971719 432973077 0.000000e+00 1838.0
58 TraesCS5A01G488900 chr6D 89.426 662 54 5 5572 6227 351964220 351964871 0.000000e+00 821.0
59 TraesCS5A01G488900 chr6D 88.855 664 58 6 5570 6227 28145896 28145243 0.000000e+00 802.0
60 TraesCS5A01G488900 chr2B 95.625 1120 15 14 7237 8342 95337761 95336662 0.000000e+00 1766.0
61 TraesCS5A01G488900 chr2B 95.346 752 17 4 1914 2655 95338504 95337761 0.000000e+00 1179.0
62 TraesCS5A01G488900 chr2B 84.049 1072 71 47 901 1911 95339924 95338892 0.000000e+00 941.0
63 TraesCS5A01G488900 chr2B 85.457 667 36 12 283 910 95341551 95340907 9.620000e-179 638.0
64 TraesCS5A01G488900 chr2B 89.627 482 2 9 8335 8783 95336525 95336059 3.560000e-158 569.0
65 TraesCS5A01G488900 chr2B 82.397 534 28 11 283 775 95346417 95345909 1.060000e-108 405.0
66 TraesCS5A01G488900 chr2B 90.217 184 13 5 1584 1766 263184086 263184265 1.470000e-57 235.0
67 TraesCS5A01G488900 chr2B 84.574 188 13 4 8135 8322 453272352 453272181 1.170000e-38 172.0
68 TraesCS5A01G488900 chr2B 81.928 166 11 10 952 1107 95345691 95345535 1.200000e-23 122.0
69 TraesCS5A01G488900 chr2B 94.000 50 2 1 2652 2701 284939354 284939306 3.400000e-09 75.0
70 TraesCS5A01G488900 chr2B 88.710 62 2 3 902 959 95345759 95345699 4.400000e-08 71.3
71 TraesCS5A01G488900 chr4B 85.139 1043 54 40 7322 8314 646301071 646302062 0.000000e+00 974.0
72 TraesCS5A01G488900 chr4B 83.702 1129 60 42 7259 8314 646368546 646369623 0.000000e+00 952.0
73 TraesCS5A01G488900 chr4B 83.494 1139 63 46 7259 8324 646324168 646325254 0.000000e+00 946.0
74 TraesCS5A01G488900 chr4B 83.304 1132 65 42 7259 8317 646349377 646350457 0.000000e+00 929.0
75 TraesCS5A01G488900 chr4B 84.335 549 30 18 7714 8228 672124973 672125499 3.690000e-133 486.0
76 TraesCS5A01G488900 chr4B 91.156 294 13 9 1225 1505 646366906 646367199 3.850000e-103 387.0
77 TraesCS5A01G488900 chr4B 90.203 296 16 9 1225 1507 646322480 646322775 2.990000e-99 374.0
78 TraesCS5A01G488900 chr4B 90.203 296 16 9 1225 1507 646348020 646348315 2.990000e-99 374.0
79 TraesCS5A01G488900 chr4B 90.909 275 12 9 1246 1507 646280082 646280356 3.020000e-94 357.0
80 TraesCS5A01G488900 chr4B 86.926 283 8 4 7259 7518 672124693 672124969 3.100000e-74 291.0
81 TraesCS5A01G488900 chr4B 78.154 531 56 21 283 775 646279122 646279630 5.190000e-72 283.0
82 TraesCS5A01G488900 chr4B 89.855 207 17 4 569 775 646321816 646322018 6.760000e-66 263.0
83 TraesCS5A01G488900 chr4B 77.444 532 60 19 283 775 646365933 646366443 6.760000e-66 263.0
84 TraesCS5A01G488900 chr4B 81.768 362 13 16 8445 8783 672125658 672125989 4.070000e-63 254.0
85 TraesCS5A01G488900 chr4B 88.406 207 21 3 569 775 646347358 646347561 6.810000e-61 246.0
86 TraesCS5A01G488900 chr4B 88.199 161 16 3 616 776 672121612 672121769 1.160000e-43 189.0
87 TraesCS5A01G488900 chr4B 78.912 294 25 17 8445 8725 646302382 646302651 1.960000e-36 165.0
88 TraesCS5A01G488900 chr4B 78.912 294 25 15 8445 8725 646325790 646326059 1.960000e-36 165.0
89 TraesCS5A01G488900 chr4B 78.912 294 25 15 8445 8725 646369944 646370213 1.960000e-36 165.0
90 TraesCS5A01G488900 chr4B 78.571 294 26 15 8445 8725 646350775 646351044 9.130000e-35 159.0
91 TraesCS5A01G488900 chr4B 81.818 143 11 5 823 959 646279718 646279851 1.210000e-18 106.0
92 TraesCS5A01G488900 chr4B 96.721 61 2 0 7259 7319 646300985 646301045 1.560000e-17 102.0
93 TraesCS5A01G488900 chr4B 93.846 65 4 0 505 569 646347271 646347335 2.020000e-16 99.0
94 TraesCS5A01G488900 chr4B 87.500 72 8 1 283 354 646321459 646321529 2.030000e-11 82.4
95 TraesCS5A01G488900 chr4B 86.111 72 9 1 283 354 646279045 646279115 9.460000e-10 76.8
96 TraesCS5A01G488900 chr4B 86.111 72 9 1 283 354 646347001 646347071 9.460000e-10 76.8
97 TraesCS5A01G488900 chr4B 86.111 72 9 1 283 354 646365856 646365926 9.460000e-10 76.8
98 TraesCS5A01G488900 chr4B 95.455 44 2 0 1152 1195 646347974 646348017 4.400000e-08 71.3
99 TraesCS5A01G488900 chr4B 95.455 44 2 0 1152 1195 646366860 646366903 4.400000e-08 71.3
100 TraesCS5A01G488900 chr1B 86.181 673 62 16 6228 6882 461896796 461896137 0.000000e+00 699.0
101 TraesCS5A01G488900 chr1B 92.903 155 5 2 2983 3132 461901561 461901408 4.130000e-53 220.0
102 TraesCS5A01G488900 chr1B 82.684 231 39 1 7009 7239 489902764 489902993 4.160000e-48 204.0
103 TraesCS5A01G488900 chr1B 95.122 41 2 0 823 863 529430269 529430309 2.050000e-06 65.8
104 TraesCS5A01G488900 chr1D 84.695 673 81 16 6228 6885 4637669 4638334 0.000000e+00 652.0
105 TraesCS5A01G488900 chr7B 88.176 499 51 2 4824 5321 659762870 659762379 9.820000e-164 588.0
106 TraesCS5A01G488900 chr2D 87.859 453 52 3 4497 4948 601996041 601995591 6.040000e-146 529.0
107 TraesCS5A01G488900 chr5B 84.281 299 32 9 7317 7606 690969324 690969616 2.410000e-70 278.0
108 TraesCS5A01G488900 chr5B 83.673 294 33 10 1225 1507 690967405 690967694 6.760000e-66 263.0
109 TraesCS5A01G488900 chr5B 78.291 433 70 13 7323 7745 691286843 691287261 3.150000e-64 257.0
110 TraesCS5A01G488900 chr5B 85.870 184 18 3 4934 5109 649026769 649026952 1.160000e-43 189.0
111 TraesCS5A01G488900 chr5B 89.510 143 15 0 1617 1759 690967949 690968091 1.950000e-41 182.0
112 TraesCS5A01G488900 chr5B 86.806 144 19 0 1616 1759 691285455 691285598 2.540000e-35 161.0
113 TraesCS5A01G488900 chr5B 92.157 51 2 1 2934 2984 47502946 47502994 4.400000e-08 71.3
114 TraesCS5A01G488900 chr5D 82.292 288 35 11 1225 1507 547430974 547431250 1.470000e-57 235.0
115 TraesCS5A01G488900 chr5D 75.810 463 67 19 7317 7747 547433904 547434353 9.000000e-45 193.0
116 TraesCS5A01G488900 chr5D 95.455 44 1 1 499 541 78059000 78059043 1.580000e-07 69.4
117 TraesCS5A01G488900 chr4D 85.981 214 28 2 7028 7240 59619701 59619913 2.470000e-55 228.0
118 TraesCS5A01G488900 chr3B 87.640 178 17 5 1590 1766 570490949 570490776 1.500000e-47 202.0
119 TraesCS5A01G488900 chr3B 91.870 123 10 0 4795 4917 803622845 803622967 1.170000e-38 172.0
120 TraesCS5A01G488900 chr3B 96.078 51 0 1 2934 2984 689925185 689925137 2.030000e-11 82.4
121 TraesCS5A01G488900 chr6A 84.577 201 29 2 7040 7239 544005372 544005173 1.930000e-46 198.0
122 TraesCS5A01G488900 chr6A 83.099 71 7 3 808 875 613661549 613661481 9.520000e-05 60.2
123 TraesCS5A01G488900 chr3D 94.118 51 1 1 2934 2984 318848797 318848749 9.460000e-10 76.8
124 TraesCS5A01G488900 chr3D 93.333 45 3 0 819 863 582147199 582147243 5.690000e-07 67.6
125 TraesCS5A01G488900 chr7A 93.333 45 3 0 819 863 649953177 649953221 5.690000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G488900 chr5A 659130332 659139114 8782 True 16220.000000 16220 100.000000 1 8783 1 chr5A.!!$R1 8782
1 TraesCS5A01G488900 chr5A 105420454 105426335 5881 False 2449.000000 5452 93.829000 2657 7239 3 chr5A.!!$F1 4582
2 TraesCS5A01G488900 chr5A 567114994 567116564 1570 False 1095.500000 1958 93.580500 2983 4499 2 chr5A.!!$F2 1516
3 TraesCS5A01G488900 chr5A 709672735 709678034 5299 False 980.600000 1600 94.190400 598 8783 5 chr5A.!!$F3 8185
4 TraesCS5A01G488900 chr5A 707819061 707821994 2933 True 964.750000 1583 93.820750 440 8059 4 chr5A.!!$R2 7619
5 TraesCS5A01G488900 chr4A 684053674 684059542 5868 False 2441.666667 5430 93.804667 2657 7239 3 chr4A.!!$F2 4582
6 TraesCS5A01G488900 chr4A 684027217 684033089 5872 False 2434.000000 5421 93.607667 2657 7239 3 chr4A.!!$F1 4582
7 TraesCS5A01G488900 chr4A 737372901 737379496 6595 False 809.000000 1496 88.240000 2702 6882 4 chr4A.!!$F3 4180
8 TraesCS5A01G488900 chr2A 705321995 705325973 3978 False 2415.000000 4418 94.841500 2653 5539 2 chr2A.!!$F2 2886
9 TraesCS5A01G488900 chr2A 705337953 705339640 1687 False 1255.500000 1515 94.039500 5572 7239 2 chr2A.!!$F3 1667
10 TraesCS5A01G488900 chr3A 199133909 199139880 5971 True 1834.000000 2959 94.482500 2657 7243 4 chr3A.!!$R2 4586
11 TraesCS5A01G488900 chr1A 15367862 15373814 5952 True 1392.666667 2529 95.921000 2657 5720 3 chr1A.!!$R2 3063
12 TraesCS5A01G488900 chr1A 15355952 15357512 1560 True 1128.000000 1461 93.792500 5714 7239 2 chr1A.!!$R1 1525
13 TraesCS5A01G488900 chrUn 393661883 393663389 1506 False 2494.000000 2494 96.450000 3804 5321 1 chrUn.!!$F1 1517
14 TraesCS5A01G488900 chrUn 471964990 471965609 619 True 1003.000000 1003 95.701000 5276 5903 1 chrUn.!!$R1 627
15 TraesCS5A01G488900 chrUn 100170094 100173524 3430 True 650.771429 1788 90.485000 902 8783 7 chrUn.!!$R2 7881
16 TraesCS5A01G488900 chr7D 118442404 118443977 1573 True 1136.500000 2034 94.378500 2983 4499 2 chr7D.!!$R1 1516
17 TraesCS5A01G488900 chr6D 432971719 432973077 1358 False 1838.000000 1838 91.126000 3131 4499 1 chr6D.!!$F2 1368
18 TraesCS5A01G488900 chr6D 351964220 351964871 651 False 821.000000 821 89.426000 5572 6227 1 chr6D.!!$F1 655
19 TraesCS5A01G488900 chr6D 28145243 28145896 653 True 802.000000 802 88.855000 5570 6227 1 chr6D.!!$R1 657
20 TraesCS5A01G488900 chr2B 95336059 95346417 10358 True 711.412500 1766 87.892375 283 8783 8 chr2B.!!$R3 8500
21 TraesCS5A01G488900 chr4B 646300985 646302651 1666 False 413.666667 974 86.924000 7259 8725 3 chr4B.!!$F2 1466
22 TraesCS5A01G488900 chr4B 646321459 646326059 4600 False 366.080000 946 85.992800 283 8725 5 chr4B.!!$F3 8442
23 TraesCS5A01G488900 chr4B 646365856 646370213 4357 False 319.183333 952 85.463333 283 8725 6 chr4B.!!$F5 8442
24 TraesCS5A01G488900 chr4B 672121612 672125989 4377 False 305.000000 486 85.307000 616 8783 4 chr4B.!!$F6 8167
25 TraesCS5A01G488900 chr4B 646347001 646351044 4043 False 279.300000 929 87.985143 283 8725 7 chr4B.!!$F4 8442
26 TraesCS5A01G488900 chr4B 646279045 646280356 1311 False 205.700000 357 84.248000 283 1507 4 chr4B.!!$F1 1224
27 TraesCS5A01G488900 chr1B 461896137 461896796 659 True 699.000000 699 86.181000 6228 6882 1 chr1B.!!$R1 654
28 TraesCS5A01G488900 chr1D 4637669 4638334 665 False 652.000000 652 84.695000 6228 6885 1 chr1D.!!$F1 657
29 TraesCS5A01G488900 chr5B 690967405 690969616 2211 False 241.000000 278 85.821333 1225 7606 3 chr5B.!!$F3 6381
30 TraesCS5A01G488900 chr5B 691285455 691287261 1806 False 209.000000 257 82.548500 1616 7745 2 chr5B.!!$F4 6129
31 TraesCS5A01G488900 chr5D 547430974 547434353 3379 False 214.000000 235 79.051000 1225 7747 2 chr5D.!!$F2 6522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.036858 GCGGCTGTCTTTCTCCTTCT 60.037 55.000 0.00 0.00 0.00 2.85 F
68 69 0.696501 TCTTGTGCTTTAGGTCCCCC 59.303 55.000 0.00 0.00 0.00 5.40 F
500 632 1.774300 GTTCAATGGTGGGGGTCCT 59.226 57.895 0.00 0.00 0.00 3.85 F
767 929 2.361865 GGGCGGGCACATAAACCA 60.362 61.111 3.27 0.00 0.00 3.67 F
2169 12246 0.324460 CTGTTACTCCCTCCGTCCCT 60.324 60.000 0.00 0.00 0.00 4.20 F
2923 13146 0.505231 CGCGTCACACATGTAACGTT 59.495 50.000 21.34 5.88 37.45 3.99 F
3642 15272 1.705186 AGGCAAGAGGTAGGCAAAGAA 59.295 47.619 0.00 0.00 0.00 2.52 F
4839 17673 1.382522 ACCGCATATGGTCTTGCAAG 58.617 50.000 20.81 20.81 37.91 4.01 F
5541 20333 0.624500 TCCTTCCCCTATTGCCAGCT 60.625 55.000 0.00 0.00 0.00 4.24 F
6411 21754 0.032117 ATCTCTCGGGTGGATGGACA 60.032 55.000 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1009 8622 0.976073 TAGGGTAGGACTGCAGGCAC 60.976 60.000 23.9 12.1 0.00 5.01 R
1205 8908 1.125093 TTCTTGCCCTCCTCAACGGA 61.125 55.000 0.0 0.0 40.30 4.69 R
1527 9266 2.036346 AGTGGCAAACAAAAGGAGCATC 59.964 45.455 0.0 0.0 0.00 3.91 R
2654 12876 0.179134 GCGCAACGAGTCATCTAGGT 60.179 55.000 0.3 0.0 0.00 3.08 R
3930 15565 3.431766 GGGGATGCGTAACAGTTCTATGT 60.432 47.826 0.0 0.0 33.96 2.29 R
4839 17673 3.258971 AGCTTCCATAGTGAGAGCAAC 57.741 47.619 0.0 0.0 35.86 4.17 R
5541 20333 0.549902 TGGAATGAAGGAGCAGGGGA 60.550 55.000 0.0 0.0 0.00 4.81 R
6386 21724 0.331616 TCCACCCGAGAGATCAGTCA 59.668 55.000 0.0 0.0 0.00 3.41 R
6856 22242 0.633921 CTCCTTCCTCTCTCCCTCCA 59.366 60.000 0.0 0.0 0.00 3.86 R
7842 25783 0.529378 CTAGGCAGGGCAAAGCAAAG 59.471 55.000 0.0 0.0 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.424176 GTCTATGTTCTGGTTTCCTTAAGC 57.576 41.667 0.00 0.00 34.80 3.09
26 27 5.712152 ATGTTCTGGTTTCCTTAAGCTTG 57.288 39.130 9.86 0.00 35.28 4.01
27 28 3.317993 TGTTCTGGTTTCCTTAAGCTTGC 59.682 43.478 9.86 0.00 35.28 4.01
28 29 2.151202 TCTGGTTTCCTTAAGCTTGCG 58.849 47.619 9.86 0.00 35.28 4.85
30 31 0.109272 GGTTTCCTTAAGCTTGCGGC 60.109 55.000 9.86 0.00 42.19 6.53
39 40 3.660621 GCTTGCGGCTGTCTTTCT 58.339 55.556 0.00 0.00 38.06 2.52
40 41 1.499502 GCTTGCGGCTGTCTTTCTC 59.500 57.895 0.00 0.00 38.06 2.87
41 42 1.916697 GCTTGCGGCTGTCTTTCTCC 61.917 60.000 0.00 0.00 38.06 3.71
42 43 0.321122 CTTGCGGCTGTCTTTCTCCT 60.321 55.000 0.00 0.00 0.00 3.69
43 44 0.108585 TTGCGGCTGTCTTTCTCCTT 59.891 50.000 0.00 0.00 0.00 3.36
44 45 0.320771 TGCGGCTGTCTTTCTCCTTC 60.321 55.000 0.00 0.00 0.00 3.46
45 46 0.036858 GCGGCTGTCTTTCTCCTTCT 60.037 55.000 0.00 0.00 0.00 2.85
46 47 2.003196 CGGCTGTCTTTCTCCTTCTC 57.997 55.000 0.00 0.00 0.00 2.87
47 48 1.548269 CGGCTGTCTTTCTCCTTCTCT 59.452 52.381 0.00 0.00 0.00 3.10
48 49 2.028567 CGGCTGTCTTTCTCCTTCTCTT 60.029 50.000 0.00 0.00 0.00 2.85
49 50 3.556004 CGGCTGTCTTTCTCCTTCTCTTT 60.556 47.826 0.00 0.00 0.00 2.52
50 51 4.000325 GGCTGTCTTTCTCCTTCTCTTTC 59.000 47.826 0.00 0.00 0.00 2.62
51 52 4.262851 GGCTGTCTTTCTCCTTCTCTTTCT 60.263 45.833 0.00 0.00 0.00 2.52
52 53 5.304778 GCTGTCTTTCTCCTTCTCTTTCTT 58.695 41.667 0.00 0.00 0.00 2.52
53 54 5.179182 GCTGTCTTTCTCCTTCTCTTTCTTG 59.821 44.000 0.00 0.00 0.00 3.02
54 55 6.240549 TGTCTTTCTCCTTCTCTTTCTTGT 57.759 37.500 0.00 0.00 0.00 3.16
55 56 6.051717 TGTCTTTCTCCTTCTCTTTCTTGTG 58.948 40.000 0.00 0.00 0.00 3.33
56 57 5.049749 GTCTTTCTCCTTCTCTTTCTTGTGC 60.050 44.000 0.00 0.00 0.00 4.57
57 58 4.696479 TTCTCCTTCTCTTTCTTGTGCT 57.304 40.909 0.00 0.00 0.00 4.40
58 59 4.696479 TCTCCTTCTCTTTCTTGTGCTT 57.304 40.909 0.00 0.00 0.00 3.91
59 60 5.041191 TCTCCTTCTCTTTCTTGTGCTTT 57.959 39.130 0.00 0.00 0.00 3.51
60 61 6.174720 TCTCCTTCTCTTTCTTGTGCTTTA 57.825 37.500 0.00 0.00 0.00 1.85
61 62 6.226787 TCTCCTTCTCTTTCTTGTGCTTTAG 58.773 40.000 0.00 0.00 0.00 1.85
62 63 5.308825 TCCTTCTCTTTCTTGTGCTTTAGG 58.691 41.667 0.00 0.00 0.00 2.69
63 64 5.066593 CCTTCTCTTTCTTGTGCTTTAGGT 58.933 41.667 0.00 0.00 0.00 3.08
64 65 5.180304 CCTTCTCTTTCTTGTGCTTTAGGTC 59.820 44.000 0.00 0.00 0.00 3.85
65 66 4.642429 TCTCTTTCTTGTGCTTTAGGTCC 58.358 43.478 0.00 0.00 0.00 4.46
66 67 3.751518 TCTTTCTTGTGCTTTAGGTCCC 58.248 45.455 0.00 0.00 0.00 4.46
67 68 2.579410 TTCTTGTGCTTTAGGTCCCC 57.421 50.000 0.00 0.00 0.00 4.81
68 69 0.696501 TCTTGTGCTTTAGGTCCCCC 59.303 55.000 0.00 0.00 0.00 5.40
100 101 9.547753 TTTTCCATTTTCGTTTTTAATCCATGA 57.452 25.926 0.00 0.00 0.00 3.07
101 102 9.547753 TTTCCATTTTCGTTTTTAATCCATGAA 57.452 25.926 0.00 0.00 0.00 2.57
102 103 9.717942 TTCCATTTTCGTTTTTAATCCATGAAT 57.282 25.926 0.00 0.00 0.00 2.57
103 104 9.149225 TCCATTTTCGTTTTTAATCCATGAATG 57.851 29.630 0.00 0.00 0.00 2.67
104 105 8.934825 CCATTTTCGTTTTTAATCCATGAATGT 58.065 29.630 0.00 0.00 0.00 2.71
107 108 9.757227 TTTTCGTTTTTAATCCATGAATGTTCT 57.243 25.926 0.00 0.00 0.00 3.01
108 109 9.757227 TTTCGTTTTTAATCCATGAATGTTCTT 57.243 25.926 0.00 0.00 0.00 2.52
109 110 9.757227 TTCGTTTTTAATCCATGAATGTTCTTT 57.243 25.926 0.00 0.00 0.00 2.52
110 111 9.757227 TCGTTTTTAATCCATGAATGTTCTTTT 57.243 25.926 0.00 0.00 0.00 2.27
195 196 9.771915 TTTTTCTCAAATTCATCAACTTTTTGC 57.228 25.926 0.00 0.00 32.17 3.68
196 197 8.489990 TTTCTCAAATTCATCAACTTTTTGCA 57.510 26.923 0.00 0.00 32.17 4.08
197 198 8.489990 TTCTCAAATTCATCAACTTTTTGCAA 57.510 26.923 0.00 0.00 32.17 4.08
198 199 8.489990 TCTCAAATTCATCAACTTTTTGCAAA 57.510 26.923 8.05 8.05 32.17 3.68
199 200 9.111613 TCTCAAATTCATCAACTTTTTGCAAAT 57.888 25.926 13.65 0.00 32.17 2.32
200 201 9.724839 CTCAAATTCATCAACTTTTTGCAAATT 57.275 25.926 13.65 1.28 32.17 1.82
201 202 9.719279 TCAAATTCATCAACTTTTTGCAAATTC 57.281 25.926 13.65 0.00 32.17 2.17
202 203 9.504710 CAAATTCATCAACTTTTTGCAAATTCA 57.495 25.926 13.65 0.00 32.17 2.57
207 208 9.719279 TCATCAACTTTTTGCAAATTCATTTTC 57.281 25.926 13.65 0.00 32.17 2.29
208 209 8.960075 CATCAACTTTTTGCAAATTCATTTTCC 58.040 29.630 13.65 0.00 32.17 3.13
209 210 8.048534 TCAACTTTTTGCAAATTCATTTTCCA 57.951 26.923 13.65 0.00 32.17 3.53
210 211 8.517878 TCAACTTTTTGCAAATTCATTTTCCAA 58.482 25.926 13.65 0.00 32.17 3.53
211 212 9.303537 CAACTTTTTGCAAATTCATTTTCCAAT 57.696 25.926 13.65 0.00 0.00 3.16
212 213 9.872721 AACTTTTTGCAAATTCATTTTCCAATT 57.127 22.222 13.65 0.00 0.00 2.32
213 214 9.872721 ACTTTTTGCAAATTCATTTTCCAATTT 57.127 22.222 13.65 0.00 33.37 1.82
263 264 9.492973 AGAGGATGGTTTTGTATTTCAATTTTG 57.507 29.630 0.00 0.00 35.84 2.44
264 265 9.271828 GAGGATGGTTTTGTATTTCAATTTTGT 57.728 29.630 0.00 0.00 35.84 2.83
265 266 9.625747 AGGATGGTTTTGTATTTCAATTTTGTT 57.374 25.926 0.00 0.00 35.84 2.83
375 468 3.499918 CACCAGGAGTTGTGAGATTTGTC 59.500 47.826 0.00 0.00 34.37 3.18
403 496 8.675504 ACTATAGTGTGTCTATGTTGTGTACTC 58.324 37.037 4.10 0.00 39.42 2.59
456 549 5.770162 CCCTCACTTTTCATAAGTTGGTTCT 59.230 40.000 0.00 0.00 0.00 3.01
457 550 6.265422 CCCTCACTTTTCATAAGTTGGTTCTT 59.735 38.462 0.00 0.00 0.00 2.52
458 551 7.201911 CCCTCACTTTTCATAAGTTGGTTCTTT 60.202 37.037 0.00 0.00 0.00 2.52
459 552 8.197439 CCTCACTTTTCATAAGTTGGTTCTTTT 58.803 33.333 0.00 0.00 0.00 2.27
460 553 9.586435 CTCACTTTTCATAAGTTGGTTCTTTTT 57.414 29.630 0.00 0.00 0.00 1.94
500 632 1.774300 GTTCAATGGTGGGGGTCCT 59.226 57.895 0.00 0.00 0.00 3.85
767 929 2.361865 GGGCGGGCACATAAACCA 60.362 61.111 3.27 0.00 0.00 3.67
853 5897 6.849085 TGTTTGGATTGCTTACCACATATT 57.151 33.333 0.00 0.00 35.81 1.28
870 5914 4.021544 ACATATTTCACGTGGTGGCAATTT 60.022 37.500 17.00 0.05 33.87 1.82
976 8589 4.060900 GCCCACTATCACATCACATAGTG 58.939 47.826 10.79 10.79 46.62 2.74
979 8592 4.060900 CACTATCACATCACATAGTGGGC 58.939 47.826 10.12 0.00 44.70 5.36
980 8593 3.969976 ACTATCACATCACATAGTGGGCT 59.030 43.478 0.00 0.00 35.01 5.19
981 8594 2.696989 TCACATCACATAGTGGGCTG 57.303 50.000 0.00 0.00 36.43 4.85
1009 8622 2.574322 GCGTGTTATGTGCTGAAGTTG 58.426 47.619 0.00 0.00 0.00 3.16
1525 9264 6.047231 GTCAGTCAGTTGATGATGATGATGA 58.953 40.000 0.00 0.00 40.92 2.92
1527 9266 6.706270 TCAGTCAGTTGATGATGATGATGATG 59.294 38.462 0.00 0.00 40.92 3.07
1568 9307 6.586344 CCACTAACTTACACCTGATGATGAT 58.414 40.000 0.00 0.00 0.00 2.45
1571 9310 7.930325 CACTAACTTACACCTGATGATGATGAT 59.070 37.037 0.00 0.00 0.00 2.45
1572 9311 7.930325 ACTAACTTACACCTGATGATGATGATG 59.070 37.037 0.00 0.00 0.00 3.07
1586 9338 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
1587 9339 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
1588 9340 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
1590 9342 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
1591 9343 8.267183 TGATGATGATGATGATGATGATGATGA 58.733 33.333 0.00 0.00 0.00 2.92
1592 9344 9.282569 GATGATGATGATGATGATGATGATGAT 57.717 33.333 0.00 0.00 0.00 2.45
1593 9345 8.442632 TGATGATGATGATGATGATGATGATG 57.557 34.615 0.00 0.00 0.00 3.07
2169 12246 0.324460 CTGTTACTCCCTCCGTCCCT 60.324 60.000 0.00 0.00 0.00 4.20
2193 12270 9.531942 CCTTAATATAACATCATTTTGCAAGCA 57.468 29.630 0.00 0.00 0.00 3.91
2314 12406 8.095937 AGTTTGTCTGGCTGTTTTAGTAATAC 57.904 34.615 0.00 0.00 0.00 1.89
2339 12431 5.030147 ACCTCTGTCCCATATTAACTGACA 58.970 41.667 0.00 0.00 34.95 3.58
2437 12657 4.279922 ACAGCCTAAATGGTGTGGTAAAAC 59.720 41.667 0.00 0.00 38.35 2.43
2451 12673 6.201997 GTGTGGTAAAACAAAAATTAGGGCAG 59.798 38.462 0.00 0.00 0.00 4.85
2489 12711 1.609208 TTCTGGTTTTGCCTGCTCTC 58.391 50.000 0.00 0.00 38.35 3.20
2519 12741 2.213499 GGAAATGATACCGAGCACTGG 58.787 52.381 0.00 0.00 0.00 4.00
2631 12853 6.517529 CGGAGGGAGTAATGAAGATCCTAAAG 60.518 46.154 0.00 0.00 32.18 1.85
2655 12877 9.668497 AAGTATTTCCAGAAGGTCTTGTAATAC 57.332 33.333 9.16 9.16 35.89 1.89
2792 13015 9.937175 GTCAAAATAAGTAGGAATAGATTGCAC 57.063 33.333 0.00 0.00 0.00 4.57
2867 13090 6.826893 ACAAAATTACAACTGTGTCATTGC 57.173 33.333 0.00 0.00 39.30 3.56
2923 13146 0.505231 CGCGTCACACATGTAACGTT 59.495 50.000 21.34 5.88 37.45 3.99
2958 14529 8.383318 CACTTGTTGGAATCTCTAGAAAAAGA 57.617 34.615 0.00 0.00 0.00 2.52
3549 15175 5.875359 AGTAAATAGAAGTGTACTGCTTGCC 59.125 40.000 0.00 0.00 32.96 4.52
3642 15272 1.705186 AGGCAAGAGGTAGGCAAAGAA 59.295 47.619 0.00 0.00 0.00 2.52
3707 15337 1.800586 TCACAAGAAAGCGAGCATGAC 59.199 47.619 0.00 0.00 0.00 3.06
3913 15548 7.143340 CACCATATACATTTTCCATGCTTCAG 58.857 38.462 0.00 0.00 0.00 3.02
3951 15586 3.793559 ACATAGAACTGTTACGCATCCC 58.206 45.455 0.00 0.00 0.00 3.85
4322 15966 3.320541 TCCAATTGTTTGTTCCGAATGCT 59.679 39.130 4.43 0.00 0.00 3.79
4412 16056 8.822652 AATGCAAACAGGAAATAAAGAAGAAG 57.177 30.769 0.00 0.00 0.00 2.85
4529 17363 2.494870 GCTGAAGATGGCTGGACAAAAT 59.505 45.455 0.00 0.00 0.00 1.82
4538 17372 6.894103 AGATGGCTGGACAAAATTCTAAGATT 59.106 34.615 0.00 0.00 0.00 2.40
4603 17437 2.160417 GCACTTGACAACCATAGCAGTC 59.840 50.000 0.00 0.00 0.00 3.51
4839 17673 1.382522 ACCGCATATGGTCTTGCAAG 58.617 50.000 20.81 20.81 37.91 4.01
5041 19674 1.489649 CAGGAATCTCTCCCAGCACAT 59.510 52.381 0.00 0.00 46.81 3.21
5169 19887 9.635520 AGAAAATGATAAATCTGAAAGTTGCAG 57.364 29.630 4.24 4.24 33.76 4.41
5191 19909 9.462174 TGCAGTCATAGTCAAATTAAAAACAAG 57.538 29.630 0.00 0.00 0.00 3.16
5194 19912 8.585018 AGTCATAGTCAAATTAAAAACAAGGGG 58.415 33.333 0.00 0.00 0.00 4.79
5269 19987 8.150296 TCAACATGTCAAGAATAAGAGTGAGAA 58.850 33.333 0.00 0.00 0.00 2.87
5359 20077 5.070001 CCTCCCTGTACAAAACTCAAATCA 58.930 41.667 0.00 0.00 0.00 2.57
5365 20083 4.887071 TGTACAAAACTCAAATCACCAGCT 59.113 37.500 0.00 0.00 0.00 4.24
5381 20099 3.720193 CTGCTGCCGCACACTGAC 61.720 66.667 0.00 0.00 42.25 3.51
5531 20323 3.080121 CTCGCTGCTCCTTCCCCT 61.080 66.667 0.00 0.00 0.00 4.79
5541 20333 0.624500 TCCTTCCCCTATTGCCAGCT 60.625 55.000 0.00 0.00 0.00 4.24
5556 20348 1.307691 AGCTCCCCTGCTCCTTCAT 60.308 57.895 0.00 0.00 39.34 2.57
5781 21064 3.213506 TGTGTGCATGGCCTATAATGTC 58.786 45.455 3.32 0.00 0.00 3.06
5782 21065 2.554032 GTGTGCATGGCCTATAATGTCC 59.446 50.000 3.32 0.00 0.00 4.02
5783 21066 2.442878 TGTGCATGGCCTATAATGTCCT 59.557 45.455 3.32 0.00 0.00 3.85
5784 21067 3.077359 GTGCATGGCCTATAATGTCCTC 58.923 50.000 3.32 0.00 0.00 3.71
5785 21068 2.710471 TGCATGGCCTATAATGTCCTCA 59.290 45.455 3.32 0.00 0.00 3.86
5786 21069 3.077359 GCATGGCCTATAATGTCCTCAC 58.923 50.000 3.32 0.00 0.00 3.51
5787 21070 3.329386 CATGGCCTATAATGTCCTCACG 58.671 50.000 3.32 0.00 0.00 4.35
5788 21071 2.673258 TGGCCTATAATGTCCTCACGA 58.327 47.619 3.32 0.00 0.00 4.35
5824 21108 7.554118 TGAGTAATTCATCAAAGAAGCCCTAAG 59.446 37.037 0.00 0.00 0.00 2.18
5836 21121 5.645201 AGAAGCCCTAAGAAAACCTTCAAT 58.355 37.500 0.00 0.00 36.34 2.57
5878 21163 3.435026 GCAAGCTTACCTGAATGGGGATA 60.435 47.826 0.00 0.00 41.11 2.59
5903 21188 3.843422 CATGACCTGGATCTCCTAGTCT 58.157 50.000 0.00 4.36 38.62 3.24
6020 21312 7.927629 TGTTAAGATCAAAATCAGCAGCTTTTT 59.072 29.630 0.00 0.00 34.07 1.94
6134 21426 2.408050 CTCAAGAACCCGTGACTGAAG 58.592 52.381 0.00 0.00 0.00 3.02
6150 21442 4.646572 ACTGAAGGATGTGGAGAGAAAAC 58.353 43.478 0.00 0.00 0.00 2.43
6173 21469 6.948353 ACTGCAAAATATGAGCATTAGTACG 58.052 36.000 0.00 0.00 37.68 3.67
6290 21621 9.160496 GGGCACAATATCTATTTATTCTCAGAG 57.840 37.037 0.00 0.00 0.00 3.35
6359 21697 2.049985 GAGAGCGCACGTGACAGT 60.050 61.111 22.23 0.00 0.00 3.55
6373 21711 4.038763 ACGTGACAGTGAGAAAGGATGTAA 59.961 41.667 0.00 0.00 0.00 2.41
6411 21754 0.032117 ATCTCTCGGGTGGATGGACA 60.032 55.000 0.00 0.00 0.00 4.02
6660 22003 4.271816 CCGACCTCGCTAGCGCAT 62.272 66.667 31.82 18.89 39.59 4.73
6800 22186 3.417779 GGGGGTTGGGAGGCTACC 61.418 72.222 9.51 9.51 0.00 3.18
6892 22280 3.157949 GGAGGAGGCGAAGAGGGG 61.158 72.222 0.00 0.00 0.00 4.79
6999 22394 1.903404 CGCTGCCTTTTTCCACCCT 60.903 57.895 0.00 0.00 0.00 4.34
7008 22403 3.430236 CCTTTTTCCACCCTGACACAAAC 60.430 47.826 0.00 0.00 0.00 2.93
7017 22412 1.063469 CCTGACACAAACACGAACACC 59.937 52.381 0.00 0.00 0.00 4.16
7018 22413 1.063469 CTGACACAAACACGAACACCC 59.937 52.381 0.00 0.00 0.00 4.61
7021 22416 1.090625 CACAAACACGAACACCCGGA 61.091 55.000 0.73 0.00 0.00 5.14
7088 22483 1.833434 CGCTCTAGCCCGAGTAGACG 61.833 65.000 0.00 0.00 37.91 4.18
7105 22500 3.378339 AGACGGTGTACAGAAAAACGAG 58.622 45.455 0.00 0.00 0.00 4.18
7124 22519 1.202710 AGTGCACGGATGTTTACCACA 60.203 47.619 12.01 0.00 40.71 4.17
7610 24102 9.456147 TGTACACCTAATGTATTTATGCTTGTT 57.544 29.630 0.00 0.00 45.59 2.83
7839 25780 1.204113 AGGACCCAGCAAGCTAGCTT 61.204 55.000 24.42 24.42 43.70 3.74
7840 25781 0.322906 GGACCCAGCAAGCTAGCTTT 60.323 55.000 27.34 12.08 43.70 3.51
7841 25782 0.807496 GACCCAGCAAGCTAGCTTTG 59.193 55.000 27.34 22.27 43.70 2.77
7842 25783 1.246737 ACCCAGCAAGCTAGCTTTGC 61.247 55.000 29.17 29.17 43.70 3.68
7995 25940 5.559770 TGAACAACTCTTGCCATATGAGAA 58.440 37.500 3.65 0.00 35.24 2.87
8218 26445 7.889873 TTCCTTTGAATACTTGTTTTCCAGA 57.110 32.000 2.50 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.174049 AGCTTAAGGAAACCAGAACATAGAC 58.826 40.000 4.29 0.00 0.00 2.59
2 3 6.623767 GCAAGCTTAAGGAAACCAGAACATAG 60.624 42.308 0.00 0.00 0.00 2.23
4 5 4.021981 GCAAGCTTAAGGAAACCAGAACAT 60.022 41.667 0.00 0.00 0.00 2.71
5 6 3.317993 GCAAGCTTAAGGAAACCAGAACA 59.682 43.478 0.00 0.00 0.00 3.18
6 7 3.609409 CGCAAGCTTAAGGAAACCAGAAC 60.609 47.826 0.00 0.00 0.00 3.01
7 8 2.552315 CGCAAGCTTAAGGAAACCAGAA 59.448 45.455 0.00 0.00 0.00 3.02
8 9 2.151202 CGCAAGCTTAAGGAAACCAGA 58.849 47.619 0.00 0.00 0.00 3.86
9 10 1.200020 CCGCAAGCTTAAGGAAACCAG 59.800 52.381 12.61 0.00 0.00 4.00
11 12 0.109272 GCCGCAAGCTTAAGGAAACC 60.109 55.000 19.94 2.31 38.99 3.27
22 23 1.499502 GAGAAAGACAGCCGCAAGC 59.500 57.895 0.00 0.00 44.25 4.01
23 24 0.321122 AGGAGAAAGACAGCCGCAAG 60.321 55.000 0.00 0.00 0.00 4.01
26 27 0.036858 AGAAGGAGAAAGACAGCCGC 60.037 55.000 0.00 0.00 0.00 6.53
27 28 1.548269 AGAGAAGGAGAAAGACAGCCG 59.452 52.381 0.00 0.00 0.00 5.52
28 29 3.694043 AAGAGAAGGAGAAAGACAGCC 57.306 47.619 0.00 0.00 0.00 4.85
30 31 6.202570 CACAAGAAAGAGAAGGAGAAAGACAG 59.797 42.308 0.00 0.00 0.00 3.51
32 33 5.049749 GCACAAGAAAGAGAAGGAGAAAGAC 60.050 44.000 0.00 0.00 0.00 3.01
33 34 5.059833 GCACAAGAAAGAGAAGGAGAAAGA 58.940 41.667 0.00 0.00 0.00 2.52
34 35 5.062528 AGCACAAGAAAGAGAAGGAGAAAG 58.937 41.667 0.00 0.00 0.00 2.62
36 37 4.696479 AGCACAAGAAAGAGAAGGAGAA 57.304 40.909 0.00 0.00 0.00 2.87
37 38 4.696479 AAGCACAAGAAAGAGAAGGAGA 57.304 40.909 0.00 0.00 0.00 3.71
38 39 5.411053 CCTAAAGCACAAGAAAGAGAAGGAG 59.589 44.000 0.00 0.00 0.00 3.69
39 40 5.163195 ACCTAAAGCACAAGAAAGAGAAGGA 60.163 40.000 0.00 0.00 0.00 3.36
40 41 5.066593 ACCTAAAGCACAAGAAAGAGAAGG 58.933 41.667 0.00 0.00 0.00 3.46
41 42 5.180304 GGACCTAAAGCACAAGAAAGAGAAG 59.820 44.000 0.00 0.00 0.00 2.85
42 43 5.063880 GGACCTAAAGCACAAGAAAGAGAA 58.936 41.667 0.00 0.00 0.00 2.87
43 44 4.505039 GGGACCTAAAGCACAAGAAAGAGA 60.505 45.833 0.00 0.00 0.00 3.10
44 45 3.753797 GGGACCTAAAGCACAAGAAAGAG 59.246 47.826 0.00 0.00 0.00 2.85
45 46 3.751518 GGGACCTAAAGCACAAGAAAGA 58.248 45.455 0.00 0.00 0.00 2.52
74 75 9.547753 TCATGGATTAAAAACGAAAATGGAAAA 57.452 25.926 0.00 0.00 0.00 2.29
75 76 9.547753 TTCATGGATTAAAAACGAAAATGGAAA 57.452 25.926 0.00 0.00 0.00 3.13
76 77 9.717942 ATTCATGGATTAAAAACGAAAATGGAA 57.282 25.926 0.00 0.00 0.00 3.53
77 78 9.149225 CATTCATGGATTAAAAACGAAAATGGA 57.851 29.630 0.00 0.00 0.00 3.41
78 79 8.934825 ACATTCATGGATTAAAAACGAAAATGG 58.065 29.630 0.00 0.00 0.00 3.16
81 82 9.757227 AGAACATTCATGGATTAAAAACGAAAA 57.243 25.926 0.00 0.00 0.00 2.29
82 83 9.757227 AAGAACATTCATGGATTAAAAACGAAA 57.243 25.926 0.00 0.00 0.00 3.46
83 84 9.757227 AAAGAACATTCATGGATTAAAAACGAA 57.243 25.926 0.00 0.00 0.00 3.85
84 85 9.757227 AAAAGAACATTCATGGATTAAAAACGA 57.243 25.926 0.00 0.00 0.00 3.85
169 170 9.771915 GCAAAAAGTTGATGAATTTGAGAAAAA 57.228 25.926 0.00 0.00 36.83 1.94
170 171 8.944029 TGCAAAAAGTTGATGAATTTGAGAAAA 58.056 25.926 0.00 0.00 36.83 2.29
171 172 8.489990 TGCAAAAAGTTGATGAATTTGAGAAA 57.510 26.923 0.00 0.00 36.83 2.52
172 173 8.489990 TTGCAAAAAGTTGATGAATTTGAGAA 57.510 26.923 0.00 0.00 36.83 2.87
173 174 8.489990 TTTGCAAAAAGTTGATGAATTTGAGA 57.510 26.923 10.02 0.00 36.83 3.27
174 175 9.724839 AATTTGCAAAAAGTTGATGAATTTGAG 57.275 25.926 17.19 0.00 36.83 3.02
175 176 9.719279 GAATTTGCAAAAAGTTGATGAATTTGA 57.281 25.926 17.19 0.00 36.83 2.69
176 177 9.504710 TGAATTTGCAAAAAGTTGATGAATTTG 57.495 25.926 17.19 0.00 36.83 2.32
181 182 9.719279 GAAAATGAATTTGCAAAAAGTTGATGA 57.281 25.926 17.19 0.00 36.83 2.92
182 183 8.960075 GGAAAATGAATTTGCAAAAAGTTGATG 58.040 29.630 17.19 0.00 39.03 3.07
183 184 8.684520 TGGAAAATGAATTTGCAAAAAGTTGAT 58.315 25.926 17.19 3.02 45.02 2.57
184 185 8.048534 TGGAAAATGAATTTGCAAAAAGTTGA 57.951 26.923 17.19 0.39 45.02 3.18
237 238 9.492973 CAAAATTGAAATACAAAACCATCCTCT 57.507 29.630 0.00 0.00 42.03 3.69
238 239 9.271828 ACAAAATTGAAATACAAAACCATCCTC 57.728 29.630 0.00 0.00 42.03 3.71
239 240 9.625747 AACAAAATTGAAATACAAAACCATCCT 57.374 25.926 0.00 0.00 42.03 3.24
258 259 9.940166 GCTCATTCAAAAATCTGAAAACAAAAT 57.060 25.926 0.00 0.00 38.75 1.82
259 260 9.165035 AGCTCATTCAAAAATCTGAAAACAAAA 57.835 25.926 0.00 0.00 38.75 2.44
260 261 8.721019 AGCTCATTCAAAAATCTGAAAACAAA 57.279 26.923 0.00 0.00 38.75 2.83
261 262 8.721019 AAGCTCATTCAAAAATCTGAAAACAA 57.279 26.923 0.00 0.00 38.75 2.83
262 263 9.248291 GTAAGCTCATTCAAAAATCTGAAAACA 57.752 29.630 0.00 0.00 38.75 2.83
263 264 8.420189 CGTAAGCTCATTCAAAAATCTGAAAAC 58.580 33.333 0.00 0.00 38.75 2.43
264 265 8.134895 ACGTAAGCTCATTCAAAAATCTGAAAA 58.865 29.630 0.00 0.00 38.96 2.29
265 266 7.648142 ACGTAAGCTCATTCAAAAATCTGAAA 58.352 30.769 0.00 0.00 38.96 2.69
266 267 7.202016 ACGTAAGCTCATTCAAAAATCTGAA 57.798 32.000 0.00 0.00 45.62 3.02
267 268 6.401047 CGACGTAAGCTCATTCAAAAATCTGA 60.401 38.462 0.00 0.00 45.62 3.27
268 269 5.729883 CGACGTAAGCTCATTCAAAAATCTG 59.270 40.000 0.00 0.00 45.62 2.90
269 270 5.163854 CCGACGTAAGCTCATTCAAAAATCT 60.164 40.000 0.00 0.00 45.62 2.40
270 271 5.022021 CCGACGTAAGCTCATTCAAAAATC 58.978 41.667 0.00 0.00 45.62 2.17
271 272 4.671766 GCCGACGTAAGCTCATTCAAAAAT 60.672 41.667 2.15 0.00 45.62 1.82
272 273 3.364565 GCCGACGTAAGCTCATTCAAAAA 60.365 43.478 2.15 0.00 45.62 1.94
273 274 2.158841 GCCGACGTAAGCTCATTCAAAA 59.841 45.455 2.15 0.00 45.62 2.44
274 275 1.730064 GCCGACGTAAGCTCATTCAAA 59.270 47.619 2.15 0.00 45.62 2.69
275 276 1.355971 GCCGACGTAAGCTCATTCAA 58.644 50.000 2.15 0.00 45.62 2.69
276 277 0.800683 CGCCGACGTAAGCTCATTCA 60.801 55.000 7.59 0.00 45.62 2.57
277 278 1.917921 CGCCGACGTAAGCTCATTC 59.082 57.895 7.59 0.00 45.62 2.67
278 279 2.165301 GCGCCGACGTAAGCTCATT 61.165 57.895 0.00 0.00 42.83 2.57
279 280 2.582498 GCGCCGACGTAAGCTCAT 60.582 61.111 0.00 0.00 42.83 2.90
375 468 9.932699 GTACACAACATAGACACACTATAGTAG 57.067 37.037 4.74 4.07 39.50 2.57
403 496 1.225376 TTGACGGCCGCAAACACTAG 61.225 55.000 28.58 0.00 0.00 2.57
460 553 9.137459 TGAACCAACTTATGATTACCTCAAAAA 57.863 29.630 0.00 0.00 37.44 1.94
461 554 8.698973 TGAACCAACTTATGATTACCTCAAAA 57.301 30.769 0.00 0.00 37.44 2.44
462 555 8.698973 TTGAACCAACTTATGATTACCTCAAA 57.301 30.769 0.00 0.00 37.44 2.69
463 556 8.739039 CATTGAACCAACTTATGATTACCTCAA 58.261 33.333 0.00 0.00 37.44 3.02
464 557 7.339212 CCATTGAACCAACTTATGATTACCTCA 59.661 37.037 0.00 0.00 38.53 3.86
465 558 7.339466 ACCATTGAACCAACTTATGATTACCTC 59.661 37.037 0.00 0.00 0.00 3.85
466 559 7.122650 CACCATTGAACCAACTTATGATTACCT 59.877 37.037 0.00 0.00 0.00 3.08
467 560 7.257722 CACCATTGAACCAACTTATGATTACC 58.742 38.462 0.00 0.00 0.00 2.85
468 561 7.257722 CCACCATTGAACCAACTTATGATTAC 58.742 38.462 0.00 0.00 0.00 1.89
469 562 6.379703 CCCACCATTGAACCAACTTATGATTA 59.620 38.462 0.00 0.00 0.00 1.75
470 563 5.187576 CCCACCATTGAACCAACTTATGATT 59.812 40.000 0.00 0.00 0.00 2.57
471 564 4.711355 CCCACCATTGAACCAACTTATGAT 59.289 41.667 0.00 0.00 0.00 2.45
472 565 4.085733 CCCACCATTGAACCAACTTATGA 58.914 43.478 0.00 0.00 0.00 2.15
473 566 3.195396 CCCCACCATTGAACCAACTTATG 59.805 47.826 0.00 0.00 0.00 1.90
474 567 3.440127 CCCCACCATTGAACCAACTTAT 58.560 45.455 0.00 0.00 0.00 1.73
475 568 2.491825 CCCCCACCATTGAACCAACTTA 60.492 50.000 0.00 0.00 0.00 2.24
476 569 1.715785 CCCCACCATTGAACCAACTT 58.284 50.000 0.00 0.00 0.00 2.66
477 570 0.178935 CCCCCACCATTGAACCAACT 60.179 55.000 0.00 0.00 0.00 3.16
478 571 0.471022 ACCCCCACCATTGAACCAAC 60.471 55.000 0.00 0.00 0.00 3.77
479 572 0.178947 GACCCCCACCATTGAACCAA 60.179 55.000 0.00 0.00 0.00 3.67
480 573 1.462928 GACCCCCACCATTGAACCA 59.537 57.895 0.00 0.00 0.00 3.67
481 574 1.304962 GGACCCCCACCATTGAACC 60.305 63.158 0.00 0.00 0.00 3.62
482 575 0.114364 AAGGACCCCCACCATTGAAC 59.886 55.000 0.00 0.00 33.88 3.18
483 576 0.407918 GAAGGACCCCCACCATTGAA 59.592 55.000 0.00 0.00 33.88 2.69
484 577 0.774096 TGAAGGACCCCCACCATTGA 60.774 55.000 0.00 0.00 33.88 2.57
485 578 0.336048 ATGAAGGACCCCCACCATTG 59.664 55.000 0.00 0.00 33.88 2.82
500 632 5.104776 AGGCAGAGCTATGTGTTAAGATGAA 60.105 40.000 10.55 0.00 0.00 2.57
759 921 9.550406 AATAATGGAAATCATGCTTGGTTTATG 57.450 29.630 10.54 0.00 36.30 1.90
853 5897 2.969628 AAAAATTGCCACCACGTGAA 57.030 40.000 19.30 2.61 35.23 3.18
979 8592 3.344137 ATAACACGCCCAGGCCCAG 62.344 63.158 0.00 0.00 37.98 4.45
980 8593 3.334891 ATAACACGCCCAGGCCCA 61.335 61.111 0.00 0.00 37.98 5.36
981 8594 2.828549 CATAACACGCCCAGGCCC 60.829 66.667 0.00 0.00 37.98 5.80
1009 8622 0.976073 TAGGGTAGGACTGCAGGCAC 60.976 60.000 23.90 12.10 0.00 5.01
1198 8901 3.338126 CTCCTCAACGGACGGACGG 62.338 68.421 6.00 0.00 36.69 4.79
1199 8902 2.178521 CTCCTCAACGGACGGACG 59.821 66.667 0.00 0.00 36.69 4.79
1200 8903 2.572284 CCTCCTCAACGGACGGAC 59.428 66.667 0.00 0.00 36.69 4.79
1201 8904 2.678934 CCCTCCTCAACGGACGGA 60.679 66.667 0.00 0.00 39.56 4.69
1202 8905 4.452733 GCCCTCCTCAACGGACGG 62.453 72.222 0.00 0.00 40.01 4.79
1203 8906 3.234630 TTGCCCTCCTCAACGGACG 62.235 63.158 0.00 0.00 36.69 4.79
1204 8907 1.376037 CTTGCCCTCCTCAACGGAC 60.376 63.158 0.00 0.00 36.69 4.79
1205 8908 1.125093 TTCTTGCCCTCCTCAACGGA 61.125 55.000 0.00 0.00 40.30 4.69
1350 9070 3.336694 AGAGAGAGAGAGGGAAAGAAGGT 59.663 47.826 0.00 0.00 0.00 3.50
1356 9076 7.857404 TTTTTAAGAGAGAGAGAGAGGGAAA 57.143 36.000 0.00 0.00 0.00 3.13
1525 9264 2.633967 TGGCAAACAAAAGGAGCATCAT 59.366 40.909 0.00 0.00 36.25 2.45
1527 9266 2.036346 AGTGGCAAACAAAAGGAGCATC 59.964 45.455 0.00 0.00 0.00 3.91
1568 9307 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
1571 9310 8.267183 TCATCATCATCATCATCATCATCATCA 58.733 33.333 0.00 0.00 0.00 3.07
1572 9311 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
1586 9338 9.912634 CATTCATTCATTCATTCATCATCATCA 57.087 29.630 0.00 0.00 0.00 3.07
1590 9342 9.399403 CACTCATTCATTCATTCATTCATCATC 57.601 33.333 0.00 0.00 0.00 2.92
1591 9343 9.131791 TCACTCATTCATTCATTCATTCATCAT 57.868 29.630 0.00 0.00 0.00 2.45
1592 9344 8.514330 TCACTCATTCATTCATTCATTCATCA 57.486 30.769 0.00 0.00 0.00 3.07
1593 9345 9.967346 ATTCACTCATTCATTCATTCATTCATC 57.033 29.630 0.00 0.00 0.00 2.92
1950 10251 5.606749 AGCTTGGTGGATAACAGGTATCATA 59.393 40.000 7.80 0.00 40.53 2.15
2193 12270 5.806654 AGACCATTTTGCAACCTAACATT 57.193 34.783 0.00 0.00 0.00 2.71
2244 12335 7.148573 GGTCATATATCAGATTACAAGCAACCG 60.149 40.741 0.00 0.00 0.00 4.44
2339 12431 6.192234 ACGTCTAGATACATTCGTTTGAGT 57.808 37.500 0.00 0.00 0.00 3.41
2451 12673 5.393461 CCAGAATCAAACCATTTAGGCTGTC 60.393 44.000 0.00 0.00 43.14 3.51
2489 12711 4.821260 TCGGTATCATTTCCATGTTCCATG 59.179 41.667 0.00 0.00 0.00 3.66
2631 12853 8.434733 GGTATTACAAGACCTTCTGGAAATAC 57.565 38.462 0.00 0.00 37.32 1.89
2653 12875 1.065102 GCGCAACGAGTCATCTAGGTA 59.935 52.381 0.30 0.00 0.00 3.08
2654 12876 0.179134 GCGCAACGAGTCATCTAGGT 60.179 55.000 0.30 0.00 0.00 3.08
2655 12877 0.872021 GGCGCAACGAGTCATCTAGG 60.872 60.000 10.83 0.00 0.00 3.02
2753 12975 7.833285 ACTTATTTTGACTTCCTTTTAGCCA 57.167 32.000 0.00 0.00 0.00 4.75
2792 13015 5.651530 ACTGGTATGATCTGTACTGTTTCG 58.348 41.667 0.00 0.00 0.00 3.46
2861 13084 2.143122 GTGGTTCTCTTGTCGCAATGA 58.857 47.619 0.00 0.00 0.00 2.57
2867 13090 2.128035 GAGTGTGTGGTTCTCTTGTCG 58.872 52.381 0.00 0.00 0.00 4.35
2958 14529 5.736616 ACTCCCTCCTTTCCCAAATATAAGT 59.263 40.000 0.00 0.00 0.00 2.24
3549 15175 5.752892 TGAGTCCTAAGTAAGCGTGATAG 57.247 43.478 0.00 0.00 0.00 2.08
3661 15291 9.155975 AGCAGTACTTTAGTTTAGATTGACATG 57.844 33.333 0.00 0.00 0.00 3.21
3930 15565 3.431766 GGGGATGCGTAACAGTTCTATGT 60.432 47.826 0.00 0.00 33.96 2.29
4034 15677 5.579511 GCCGACTAACTTACATAACACACAT 59.420 40.000 0.00 0.00 0.00 3.21
4322 15966 3.681417 CGTGTGCTTCTCAAGAATGATCA 59.319 43.478 0.00 0.00 34.37 2.92
4412 16056 5.639931 CAGTTAGCAAGTAAGTCCTTTCTCC 59.360 44.000 0.00 0.00 0.00 3.71
4603 17437 8.812147 TTTATTAATATACGACTCTGCACCAG 57.188 34.615 0.00 0.00 0.00 4.00
4804 17638 3.585862 TGCGGTCTTATGTTTGAGAGTC 58.414 45.455 0.00 0.00 0.00 3.36
4809 17643 4.776349 ACCATATGCGGTCTTATGTTTGA 58.224 39.130 0.00 0.00 32.11 2.69
4839 17673 3.258971 AGCTTCCATAGTGAGAGCAAC 57.741 47.619 0.00 0.00 35.86 4.17
5041 19674 5.249780 TGCTTTATTGAAGGGGACTAACA 57.750 39.130 0.00 0.00 42.68 2.41
5169 19887 8.581578 TCCCCTTGTTTTTAATTTGACTATGAC 58.418 33.333 0.00 0.00 0.00 3.06
5191 19909 1.125633 TAGGGCGACATTAACTCCCC 58.874 55.000 0.00 0.00 37.70 4.81
5194 19912 6.926313 AGAGATTATAGGGCGACATTAACTC 58.074 40.000 0.00 0.00 0.00 3.01
5269 19987 1.869342 GCACATTGCCTTTCGTTTGCT 60.869 47.619 0.00 0.00 37.42 3.91
5381 20099 2.025418 ACAACTCGGCCTAAACGCG 61.025 57.895 3.53 3.53 0.00 6.01
5531 20323 1.987807 GAGCAGGGGAGCTGGCAATA 61.988 60.000 0.00 0.00 46.75 1.90
5541 20333 0.549902 TGGAATGAAGGAGCAGGGGA 60.550 55.000 0.00 0.00 0.00 4.81
5556 20348 1.064758 CCGGATCCTTCATGGTTGGAA 60.065 52.381 10.75 0.00 37.07 3.53
5634 20917 4.462483 AGCTAGCTAGATGCCTAGATTGAC 59.538 45.833 25.15 1.15 44.00 3.18
5781 21064 3.361794 CTCATATGTGAGGTCGTGAGG 57.638 52.381 11.44 0.00 46.56 3.86
5846 21131 4.218417 TCAGGTAAGCTTGCCTTTCATTTC 59.782 41.667 31.05 3.58 41.64 2.17
6134 21426 2.783135 TGCAGTTTTCTCTCCACATCC 58.217 47.619 0.00 0.00 0.00 3.51
6150 21442 6.948353 ACGTACTAATGCTCATATTTTGCAG 58.052 36.000 0.00 0.00 40.18 4.41
6173 21469 7.055667 TCCATTGAATCTCTGTGATACCTAC 57.944 40.000 0.00 0.00 34.45 3.18
6290 21621 6.695713 GTGGCCGAATATTTGGTAATTTCTTC 59.304 38.462 20.81 3.25 34.01 2.87
6359 21697 3.096852 TCCTCGCTTACATCCTTTCTCA 58.903 45.455 0.00 0.00 0.00 3.27
6386 21724 0.331616 TCCACCCGAGAGATCAGTCA 59.668 55.000 0.00 0.00 0.00 3.41
6598 21941 1.065701 CTCGATCCGTTCCTGAATCGT 59.934 52.381 0.00 0.00 33.78 3.73
6856 22242 0.633921 CTCCTTCCTCTCTCCCTCCA 59.366 60.000 0.00 0.00 0.00 3.86
6892 22280 1.133482 CCTCCTCTCCTTCCTCTCTCC 60.133 61.905 0.00 0.00 0.00 3.71
6921 22309 2.603560 CGAGTCAAGCCCGAGAAAATAC 59.396 50.000 0.00 0.00 0.00 1.89
6999 22394 1.088306 GGGTGTTCGTGTTTGTGTCA 58.912 50.000 0.00 0.00 0.00 3.58
7008 22403 3.033764 CACGTCCGGGTGTTCGTG 61.034 66.667 16.81 16.81 45.10 4.35
7017 22412 2.022129 GTCTTGCAGTCACGTCCGG 61.022 63.158 0.00 0.00 0.00 5.14
7018 22413 2.365068 CGTCTTGCAGTCACGTCCG 61.365 63.158 6.11 0.00 0.00 4.79
7021 22416 1.299926 GTCCGTCTTGCAGTCACGT 60.300 57.895 11.69 0.00 0.00 4.49
7088 22483 2.610374 TGCACTCGTTTTTCTGTACACC 59.390 45.455 0.00 0.00 0.00 4.16
7105 22500 1.196808 CTGTGGTAAACATCCGTGCAC 59.803 52.381 6.82 6.82 38.39 4.57
7154 22549 2.491621 CTCGCTCGATGTGCCTCA 59.508 61.111 0.00 0.00 0.00 3.86
7610 24102 6.154877 AGTTTATGATGTCATGCCCAAATTCA 59.845 34.615 5.78 0.00 37.15 2.57
7838 25779 0.814812 GCAGGGCAAAGCAAAGCAAA 60.815 50.000 0.00 0.00 0.00 3.68
7839 25780 1.227615 GCAGGGCAAAGCAAAGCAA 60.228 52.632 0.00 0.00 0.00 3.91
7840 25781 2.422591 GCAGGGCAAAGCAAAGCA 59.577 55.556 0.00 0.00 0.00 3.91
7841 25782 1.535204 TAGGCAGGGCAAAGCAAAGC 61.535 55.000 0.00 0.00 0.00 3.51
7842 25783 0.529378 CTAGGCAGGGCAAAGCAAAG 59.471 55.000 0.00 0.00 0.00 2.77
7995 25940 6.012771 AGGTAGGTAGCTTAATTTGTTGAGGT 60.013 38.462 0.00 0.00 0.00 3.85
8218 26445 1.661463 TTCAGAGAGGAGTTGGGCAT 58.339 50.000 0.00 0.00 0.00 4.40
8392 27022 6.319405 CCACACAAGTTGGAATGATATGATGA 59.681 38.462 7.96 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.