Multiple sequence alignment - TraesCS5A01G488700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G488700 chr5A 100.000 5003 0 0 1 5003 658669460 658674462 0.000000e+00 9239.0
1 TraesCS5A01G488700 chr5A 75.787 413 81 17 241 645 264544429 264544028 1.840000e-44 191.0
2 TraesCS5A01G488700 chr5A 96.078 102 4 0 3709 3810 658673267 658673368 3.100000e-37 167.0
3 TraesCS5A01G488700 chr5D 96.413 1812 47 7 1768 3573 530425669 530427468 0.000000e+00 2970.0
4 TraesCS5A01G488700 chr5D 92.131 1042 51 9 739 1770 530424481 530425501 0.000000e+00 1441.0
5 TraesCS5A01G488700 chr5D 89.922 645 55 6 4362 5003 530428459 530429096 0.000000e+00 822.0
6 TraesCS5A01G488700 chr5D 87.969 640 56 10 3569 4193 530427515 530428148 0.000000e+00 736.0
7 TraesCS5A01G488700 chr5D 89.706 340 34 1 307 645 530418676 530419015 2.770000e-117 433.0
8 TraesCS5A01G488700 chr5D 95.000 100 5 0 215 314 530417922 530418021 1.860000e-34 158.0
9 TraesCS5A01G488700 chr5B 90.143 1116 63 19 671 1771 669669938 669671021 0.000000e+00 1408.0
10 TraesCS5A01G488700 chr5B 88.022 1102 71 30 2503 3573 669671607 669672678 0.000000e+00 1247.0
11 TraesCS5A01G488700 chr5B 89.263 624 54 7 4386 5003 669673844 669674460 0.000000e+00 769.0
12 TraesCS5A01G488700 chr5B 86.389 529 44 13 3569 4084 669672725 669673238 2.040000e-153 553.0
13 TraesCS5A01G488700 chr5B 83.491 424 58 10 2015 2435 669671193 669671607 7.860000e-103 385.0
14 TraesCS5A01G488700 chr5B 92.344 209 16 0 1 209 18323738 18323946 1.050000e-76 298.0
15 TraesCS5A01G488700 chr5B 86.395 147 18 2 3248 3393 455278846 455278991 5.180000e-35 159.0
16 TraesCS5A01G488700 chr5B 90.099 101 10 0 3710 3810 669672954 669673054 1.130000e-26 132.0
17 TraesCS5A01G488700 chr2A 90.557 1006 57 13 772 1770 88661936 88662910 0.000000e+00 1297.0
18 TraesCS5A01G488700 chr2A 90.216 879 70 12 2161 3038 88669111 88669974 0.000000e+00 1133.0
19 TraesCS5A01G488700 chr2A 82.078 876 103 24 2561 3393 41162221 41161357 0.000000e+00 699.0
20 TraesCS5A01G488700 chr2A 86.000 550 42 15 3043 3573 88670294 88670827 1.570000e-154 556.0
21 TraesCS5A01G488700 chr2A 94.135 341 19 1 3569 3909 88670874 88671213 7.420000e-143 518.0
22 TraesCS5A01G488700 chr2A 85.271 516 37 16 4398 4905 88671863 88672347 3.480000e-136 496.0
23 TraesCS5A01G488700 chr2A 82.504 583 60 21 3709 4282 88671112 88671661 1.630000e-129 473.0
24 TraesCS5A01G488700 chr2A 76.570 414 82 13 241 645 748467744 748467337 3.920000e-51 213.0
25 TraesCS5A01G488700 chr2A 84.043 94 14 1 1597 1690 88669778 88669870 6.900000e-14 89.8
26 TraesCS5A01G488700 chr2B 90.486 1009 56 15 772 1770 141559099 141560077 0.000000e+00 1295.0
27 TraesCS5A01G488700 chr2B 88.120 1069 80 23 2529 3573 141563072 141564117 0.000000e+00 1227.0
28 TraesCS5A01G488700 chr2B 94.428 341 18 1 3569 3909 141564164 141564503 1.600000e-144 523.0
29 TraesCS5A01G488700 chr2B 82.465 576 59 21 3709 4275 141564402 141564944 2.730000e-127 466.0
30 TraesCS5A01G488700 chr2B 97.059 102 3 0 3808 3909 141564303 141564404 6.660000e-39 172.0
31 TraesCS5A01G488700 chr2B 93.750 112 7 0 2570 2681 672333444 672333333 8.610000e-38 169.0
32 TraesCS5A01G488700 chr2B 85.106 94 13 1 1597 1690 141563375 141563467 1.480000e-15 95.3
33 TraesCS5A01G488700 chr2D 91.763 947 44 12 772 1710 88287893 88288813 0.000000e+00 1286.0
34 TraesCS5A01G488700 chr2D 88.974 916 65 15 2578 3476 88290446 88291342 0.000000e+00 1099.0
35 TraesCS5A01G488700 chr2D 89.905 525 46 2 4386 4905 88301474 88301996 0.000000e+00 669.0
36 TraesCS5A01G488700 chr2D 94.428 341 18 1 3569 3909 88293698 88294037 1.600000e-144 523.0
37 TraesCS5A01G488700 chr2D 88.022 359 34 2 3709 4059 88293936 88294293 2.790000e-112 416.0
38 TraesCS5A01G488700 chr2D 97.059 102 3 0 3808 3909 88293837 88293938 6.660000e-39 172.0
39 TraesCS5A01G488700 chr2D 87.755 147 17 1 3248 3393 547238898 547239044 2.390000e-38 171.0
40 TraesCS5A01G488700 chr6A 82.326 877 99 27 2561 3393 207841275 207840411 0.000000e+00 710.0
41 TraesCS5A01G488700 chr6A 83.387 620 76 11 2561 3157 614472849 614473464 2.630000e-152 549.0
42 TraesCS5A01G488700 chr7B 81.963 876 104 24 2561 3393 683946682 683947546 0.000000e+00 693.0
43 TraesCS5A01G488700 chr7B 81.735 876 105 26 2561 3393 114144741 114143878 0.000000e+00 680.0
44 TraesCS5A01G488700 chr1D 81.891 878 103 25 2561 3393 97777468 97776602 0.000000e+00 689.0
45 TraesCS5A01G488700 chr6B 81.735 876 106 24 2561 3393 483505988 483505124 0.000000e+00 682.0
46 TraesCS5A01G488700 chr6B 86.500 200 26 1 12 211 539959670 539959868 8.430000e-53 219.0
47 TraesCS5A01G488700 chr6B 91.964 112 9 0 2570 2681 519221520 519221631 1.860000e-34 158.0
48 TraesCS5A01G488700 chr7A 82.581 620 81 11 2561 3157 510565570 510566185 5.740000e-144 521.0
49 TraesCS5A01G488700 chr3D 85.019 534 50 15 2560 3067 497491474 497490945 2.670000e-142 516.0
50 TraesCS5A01G488700 chr3D 100.000 30 0 0 3397 3426 497381620 497381649 7.000000e-04 56.5
51 TraesCS5A01G488700 chr3A 85.572 402 36 7 2560 2940 637282952 637283352 7.800000e-108 401.0
52 TraesCS5A01G488700 chr7D 90.476 210 20 0 3 212 166197804 166198013 1.370000e-70 278.0
53 TraesCS5A01G488700 chr4B 76.982 391 82 6 260 645 588545550 588545163 3.030000e-52 217.0
54 TraesCS5A01G488700 chr4D 76.904 394 75 14 259 644 449235643 449235258 5.080000e-50 209.0
55 TraesCS5A01G488700 chr4D 86.486 148 18 2 3248 3393 375719143 375719290 1.440000e-35 161.0
56 TraesCS5A01G488700 chr4A 76.336 393 80 11 260 645 740958253 740957867 1.100000e-46 198.0
57 TraesCS5A01G488700 chr6D 84.211 190 30 0 23 212 5037704 5037515 8.550000e-43 185.0
58 TraesCS5A01G488700 chr3B 90.909 77 7 0 2560 2636 657541282 657541206 2.460000e-18 104.0
59 TraesCS5A01G488700 chr3B 95.556 45 1 1 2089 2132 224311018 224311062 2.500000e-08 71.3
60 TraesCS5A01G488700 chr1A 97.500 40 0 1 2094 2132 539966749 539966710 3.230000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G488700 chr5A 658669460 658674462 5002 False 4703.000000 9239 98.039000 1 5003 2 chr5A.!!$F1 5002
1 TraesCS5A01G488700 chr5D 530424481 530429096 4615 False 1492.250000 2970 91.608750 739 5003 4 chr5D.!!$F2 4264
2 TraesCS5A01G488700 chr5D 530417922 530419015 1093 False 295.500000 433 92.353000 215 645 2 chr5D.!!$F1 430
3 TraesCS5A01G488700 chr5B 669669938 669674460 4522 False 749.000000 1408 87.901167 671 5003 6 chr5B.!!$F3 4332
4 TraesCS5A01G488700 chr2A 88661936 88662910 974 False 1297.000000 1297 90.557000 772 1770 1 chr2A.!!$F1 998
5 TraesCS5A01G488700 chr2A 41161357 41162221 864 True 699.000000 699 82.078000 2561 3393 1 chr2A.!!$R1 832
6 TraesCS5A01G488700 chr2A 88669111 88672347 3236 False 544.300000 1133 87.028167 1597 4905 6 chr2A.!!$F2 3308
7 TraesCS5A01G488700 chr2B 141559099 141564944 5845 False 629.716667 1295 89.610667 772 4275 6 chr2B.!!$F1 3503
8 TraesCS5A01G488700 chr2D 88287893 88294293 6400 False 699.200000 1286 92.049200 772 4059 5 chr2D.!!$F3 3287
9 TraesCS5A01G488700 chr2D 88301474 88301996 522 False 669.000000 669 89.905000 4386 4905 1 chr2D.!!$F1 519
10 TraesCS5A01G488700 chr6A 207840411 207841275 864 True 710.000000 710 82.326000 2561 3393 1 chr6A.!!$R1 832
11 TraesCS5A01G488700 chr6A 614472849 614473464 615 False 549.000000 549 83.387000 2561 3157 1 chr6A.!!$F1 596
12 TraesCS5A01G488700 chr7B 683946682 683947546 864 False 693.000000 693 81.963000 2561 3393 1 chr7B.!!$F1 832
13 TraesCS5A01G488700 chr7B 114143878 114144741 863 True 680.000000 680 81.735000 2561 3393 1 chr7B.!!$R1 832
14 TraesCS5A01G488700 chr1D 97776602 97777468 866 True 689.000000 689 81.891000 2561 3393 1 chr1D.!!$R1 832
15 TraesCS5A01G488700 chr6B 483505124 483505988 864 True 682.000000 682 81.735000 2561 3393 1 chr6B.!!$R1 832
16 TraesCS5A01G488700 chr7A 510565570 510566185 615 False 521.000000 521 82.581000 2561 3157 1 chr7A.!!$F1 596
17 TraesCS5A01G488700 chr3D 497490945 497491474 529 True 516.000000 516 85.019000 2560 3067 1 chr3D.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 1309 0.038526 CTCTGTGTAAGACGCCGGTT 60.039 55.0 1.9 0.0 0.00 4.44 F
648 1312 0.244450 TGTGTAAGACGCCGGTTAGG 59.756 55.0 1.9 0.0 44.97 2.69 F
744 1408 0.251787 GACTGGAAAGGGGTGGCATT 60.252 55.0 0.0 0.0 0.00 3.56 F
1988 2844 0.394352 GGTTCATGGCAGGGTACTGG 60.394 60.0 0.0 0.0 45.04 4.00 F
3765 9750 0.397816 CCCCCGAGAGATCAAGAGGT 60.398 60.0 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 2646 0.315251 GCTGTGGGTCTTTTTGCCTC 59.685 55.000 0.00 0.00 0.00 4.70 R
1988 2844 1.269723 GCCCTTGCTTTTACACTGGAC 59.730 52.381 0.00 0.00 33.53 4.02 R
2359 5684 2.268762 TGGAGCATGTACTTGCAACA 57.731 45.000 29.06 23.88 45.23 3.33 R
3949 10033 0.032952 TCGTCACCCCTTCTTTCGTG 59.967 55.000 0.00 0.00 0.00 4.35 R
4708 11223 1.270839 ACCATGTACTCATATGCCGCC 60.271 52.381 0.00 0.00 32.47 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.685897 CTCTACCACCAGTCTGTAGAGC 59.314 54.545 15.67 0.00 46.66 4.09
23 24 1.751924 CTACCACCAGTCTGTAGAGCC 59.248 57.143 0.00 0.00 35.13 4.70
24 25 0.178932 ACCACCAGTCTGTAGAGCCA 60.179 55.000 0.00 0.00 0.00 4.75
25 26 1.198713 CCACCAGTCTGTAGAGCCAT 58.801 55.000 0.00 0.00 0.00 4.40
26 27 1.556911 CCACCAGTCTGTAGAGCCATT 59.443 52.381 0.00 0.00 0.00 3.16
27 28 2.026822 CCACCAGTCTGTAGAGCCATTT 60.027 50.000 0.00 0.00 0.00 2.32
28 29 3.005554 CACCAGTCTGTAGAGCCATTTG 58.994 50.000 0.00 0.00 0.00 2.32
29 30 2.012673 CCAGTCTGTAGAGCCATTTGC 58.987 52.381 0.00 0.00 41.71 3.68
42 43 4.718940 GCCATTTGCTATGTAAACACCT 57.281 40.909 0.00 0.00 36.87 4.00
43 44 5.828299 GCCATTTGCTATGTAAACACCTA 57.172 39.130 0.00 0.00 36.87 3.08
44 45 5.821204 GCCATTTGCTATGTAAACACCTAG 58.179 41.667 0.00 0.00 36.87 3.02
45 46 5.357032 GCCATTTGCTATGTAAACACCTAGT 59.643 40.000 0.00 0.00 36.87 2.57
46 47 6.127730 GCCATTTGCTATGTAAACACCTAGTT 60.128 38.462 0.00 0.00 38.56 2.24
47 48 7.576856 GCCATTTGCTATGTAAACACCTAGTTT 60.577 37.037 0.00 0.00 44.25 2.66
60 61 7.881775 AACACCTAGTTTTCACTTTCAGATT 57.118 32.000 0.00 0.00 37.03 2.40
61 62 7.497925 ACACCTAGTTTTCACTTTCAGATTC 57.502 36.000 0.00 0.00 34.06 2.52
62 63 7.283329 ACACCTAGTTTTCACTTTCAGATTCT 58.717 34.615 0.00 0.00 34.06 2.40
63 64 7.442666 ACACCTAGTTTTCACTTTCAGATTCTC 59.557 37.037 0.00 0.00 34.06 2.87
64 65 6.647067 ACCTAGTTTTCACTTTCAGATTCTCG 59.353 38.462 0.00 0.00 34.06 4.04
65 66 6.868864 CCTAGTTTTCACTTTCAGATTCTCGA 59.131 38.462 0.00 0.00 34.06 4.04
66 67 7.547370 CCTAGTTTTCACTTTCAGATTCTCGAT 59.453 37.037 0.00 0.00 34.06 3.59
67 68 9.574458 CTAGTTTTCACTTTCAGATTCTCGATA 57.426 33.333 0.00 0.00 34.06 2.92
68 69 8.245701 AGTTTTCACTTTCAGATTCTCGATAC 57.754 34.615 0.00 0.00 0.00 2.24
69 70 7.332182 AGTTTTCACTTTCAGATTCTCGATACC 59.668 37.037 0.00 0.00 0.00 2.73
70 71 5.263968 TCACTTTCAGATTCTCGATACCC 57.736 43.478 0.00 0.00 0.00 3.69
71 72 4.709886 TCACTTTCAGATTCTCGATACCCA 59.290 41.667 0.00 0.00 0.00 4.51
72 73 5.186992 TCACTTTCAGATTCTCGATACCCAA 59.813 40.000 0.00 0.00 0.00 4.12
73 74 5.521735 CACTTTCAGATTCTCGATACCCAAG 59.478 44.000 0.00 0.00 0.00 3.61
74 75 3.735237 TCAGATTCTCGATACCCAAGC 57.265 47.619 0.00 0.00 0.00 4.01
75 76 2.365617 TCAGATTCTCGATACCCAAGCC 59.634 50.000 0.00 0.00 0.00 4.35
76 77 2.103094 CAGATTCTCGATACCCAAGCCA 59.897 50.000 0.00 0.00 0.00 4.75
77 78 2.103263 AGATTCTCGATACCCAAGCCAC 59.897 50.000 0.00 0.00 0.00 5.01
78 79 0.539986 TTCTCGATACCCAAGCCACC 59.460 55.000 0.00 0.00 0.00 4.61
79 80 0.325296 TCTCGATACCCAAGCCACCT 60.325 55.000 0.00 0.00 0.00 4.00
80 81 0.541863 CTCGATACCCAAGCCACCTT 59.458 55.000 0.00 0.00 0.00 3.50
81 82 0.251916 TCGATACCCAAGCCACCTTG 59.748 55.000 0.00 0.00 46.38 3.61
87 88 4.929807 CAAGCCACCTTGGTCCTT 57.070 55.556 0.00 0.00 43.75 3.36
88 89 2.646121 CAAGCCACCTTGGTCCTTC 58.354 57.895 0.00 0.00 43.75 3.46
89 90 1.073199 AAGCCACCTTGGTCCTTCG 59.927 57.895 0.00 0.00 40.46 3.79
90 91 2.359975 GCCACCTTGGTCCTTCGG 60.360 66.667 0.00 0.00 40.46 4.30
91 92 2.351276 CCACCTTGGTCCTTCGGG 59.649 66.667 0.00 0.00 31.35 5.14
92 93 2.359975 CACCTTGGTCCTTCGGGC 60.360 66.667 0.00 0.00 34.44 6.13
93 94 2.529389 ACCTTGGTCCTTCGGGCT 60.529 61.111 0.00 0.00 34.44 5.19
94 95 1.229400 ACCTTGGTCCTTCGGGCTA 60.229 57.895 0.00 0.00 34.44 3.93
95 96 1.221021 CCTTGGTCCTTCGGGCTAC 59.779 63.158 0.00 0.00 34.44 3.58
96 97 1.550130 CCTTGGTCCTTCGGGCTACA 61.550 60.000 0.00 0.00 34.44 2.74
97 98 0.323629 CTTGGTCCTTCGGGCTACAA 59.676 55.000 0.00 0.00 34.44 2.41
98 99 0.766131 TTGGTCCTTCGGGCTACAAA 59.234 50.000 0.00 0.00 34.44 2.83
99 100 0.988832 TGGTCCTTCGGGCTACAAAT 59.011 50.000 0.00 0.00 34.44 2.32
100 101 2.189676 TGGTCCTTCGGGCTACAAATA 58.810 47.619 0.00 0.00 34.44 1.40
101 102 2.572556 TGGTCCTTCGGGCTACAAATAA 59.427 45.455 0.00 0.00 34.44 1.40
102 103 3.201266 TGGTCCTTCGGGCTACAAATAAT 59.799 43.478 0.00 0.00 34.44 1.28
103 104 3.564225 GGTCCTTCGGGCTACAAATAATG 59.436 47.826 0.00 0.00 34.44 1.90
104 105 4.196971 GTCCTTCGGGCTACAAATAATGT 58.803 43.478 0.00 0.00 39.49 2.71
105 106 4.272748 GTCCTTCGGGCTACAAATAATGTC 59.727 45.833 0.00 0.00 38.03 3.06
106 107 3.564225 CCTTCGGGCTACAAATAATGTCC 59.436 47.826 0.00 0.00 42.70 4.02
107 108 3.202829 TCGGGCTACAAATAATGTCCC 57.797 47.619 0.00 0.00 42.70 4.46
108 109 2.506231 TCGGGCTACAAATAATGTCCCA 59.494 45.455 6.27 0.00 43.32 4.37
109 110 3.137544 TCGGGCTACAAATAATGTCCCAT 59.862 43.478 6.27 0.00 43.32 4.00
110 111 3.888930 CGGGCTACAAATAATGTCCCATT 59.111 43.478 6.27 0.00 43.32 3.16
111 112 4.340950 CGGGCTACAAATAATGTCCCATTT 59.659 41.667 6.27 0.00 43.32 2.32
112 113 5.600696 GGGCTACAAATAATGTCCCATTTG 58.399 41.667 5.69 5.69 42.89 2.32
113 114 5.453198 GGGCTACAAATAATGTCCCATTTGG 60.453 44.000 10.71 0.00 42.89 3.28
114 115 5.049828 GCTACAAATAATGTCCCATTTGGC 58.950 41.667 10.71 3.36 43.36 4.52
115 116 4.486125 ACAAATAATGTCCCATTTGGCC 57.514 40.909 0.00 0.00 43.36 5.36
116 117 3.843027 ACAAATAATGTCCCATTTGGCCA 59.157 39.130 0.00 0.00 43.36 5.36
117 118 4.288105 ACAAATAATGTCCCATTTGGCCAA 59.712 37.500 16.05 16.05 43.36 4.52
118 119 4.486125 AATAATGTCCCATTTGGCCAAC 57.514 40.909 20.35 6.89 0.00 3.77
119 120 0.983467 AATGTCCCATTTGGCCAACC 59.017 50.000 20.35 2.64 0.00 3.77
120 121 0.116940 ATGTCCCATTTGGCCAACCT 59.883 50.000 20.35 5.69 36.63 3.50
121 122 0.780637 TGTCCCATTTGGCCAACCTA 59.219 50.000 20.35 3.71 36.63 3.08
122 123 1.360852 TGTCCCATTTGGCCAACCTAT 59.639 47.619 20.35 6.48 36.63 2.57
123 124 2.583101 TGTCCCATTTGGCCAACCTATA 59.417 45.455 20.35 2.78 36.63 1.31
124 125 2.956333 GTCCCATTTGGCCAACCTATAC 59.044 50.000 20.35 10.57 36.63 1.47
125 126 2.856231 TCCCATTTGGCCAACCTATACT 59.144 45.455 20.35 0.00 36.63 2.12
126 127 3.270960 TCCCATTTGGCCAACCTATACTT 59.729 43.478 20.35 0.00 36.63 2.24
127 128 4.479056 TCCCATTTGGCCAACCTATACTTA 59.521 41.667 20.35 0.00 36.63 2.24
128 129 4.827284 CCCATTTGGCCAACCTATACTTAG 59.173 45.833 20.35 0.00 36.63 2.18
129 130 5.445964 CCATTTGGCCAACCTATACTTAGT 58.554 41.667 20.35 0.00 36.63 2.24
130 131 5.891551 CCATTTGGCCAACCTATACTTAGTT 59.108 40.000 20.35 0.00 36.63 2.24
131 132 6.379988 CCATTTGGCCAACCTATACTTAGTTT 59.620 38.462 20.35 0.00 36.63 2.66
132 133 7.093509 CCATTTGGCCAACCTATACTTAGTTTT 60.094 37.037 20.35 0.00 36.63 2.43
133 134 6.827586 TTGGCCAACCTATACTTAGTTTTG 57.172 37.500 16.05 0.00 36.63 2.44
134 135 5.883180 TGGCCAACCTATACTTAGTTTTGT 58.117 37.500 0.61 0.00 36.63 2.83
135 136 6.308566 TGGCCAACCTATACTTAGTTTTGTT 58.691 36.000 0.61 0.00 36.63 2.83
136 137 6.778559 TGGCCAACCTATACTTAGTTTTGTTT 59.221 34.615 0.61 0.00 36.63 2.83
137 138 7.288158 TGGCCAACCTATACTTAGTTTTGTTTT 59.712 33.333 0.61 0.00 36.63 2.43
138 139 7.811236 GGCCAACCTATACTTAGTTTTGTTTTC 59.189 37.037 0.00 0.00 0.00 2.29
139 140 8.354426 GCCAACCTATACTTAGTTTTGTTTTCA 58.646 33.333 0.00 0.00 0.00 2.69
149 150 8.611757 ACTTAGTTTTGTTTTCATCAATTTGCC 58.388 29.630 0.00 0.00 0.00 4.52
150 151 6.998968 AGTTTTGTTTTCATCAATTTGCCA 57.001 29.167 0.00 0.00 0.00 4.92
151 152 7.018635 AGTTTTGTTTTCATCAATTTGCCAG 57.981 32.000 0.00 0.00 0.00 4.85
152 153 6.822676 AGTTTTGTTTTCATCAATTTGCCAGA 59.177 30.769 0.00 0.00 0.00 3.86
153 154 7.336427 AGTTTTGTTTTCATCAATTTGCCAGAA 59.664 29.630 0.00 0.00 0.00 3.02
154 155 7.621428 TTTGTTTTCATCAATTTGCCAGAAA 57.379 28.000 0.00 0.04 0.00 2.52
155 156 7.621428 TTGTTTTCATCAATTTGCCAGAAAA 57.379 28.000 14.08 14.08 33.94 2.29
156 157 7.621428 TGTTTTCATCAATTTGCCAGAAAAA 57.379 28.000 17.17 7.44 36.91 1.94
157 158 8.223177 TGTTTTCATCAATTTGCCAGAAAAAT 57.777 26.923 17.17 0.00 36.91 1.82
158 159 8.344098 TGTTTTCATCAATTTGCCAGAAAAATC 58.656 29.630 17.17 11.06 36.91 2.17
159 160 6.709145 TTCATCAATTTGCCAGAAAAATCG 57.291 33.333 0.00 0.00 0.00 3.34
160 161 6.023357 TCATCAATTTGCCAGAAAAATCGA 57.977 33.333 0.00 0.00 0.00 3.59
161 162 6.094719 TCATCAATTTGCCAGAAAAATCGAG 58.905 36.000 0.00 0.00 0.00 4.04
162 163 5.703978 TCAATTTGCCAGAAAAATCGAGA 57.296 34.783 0.00 0.00 0.00 4.04
163 164 6.271488 TCAATTTGCCAGAAAAATCGAGAT 57.729 33.333 0.00 0.00 0.00 2.75
164 165 6.324819 TCAATTTGCCAGAAAAATCGAGATC 58.675 36.000 0.00 0.00 0.00 2.75
165 166 4.340894 TTTGCCAGAAAAATCGAGATCG 57.659 40.909 0.00 0.00 41.45 3.69
183 184 9.929180 TCGAGATCGATATAATTCCAATCTTTT 57.071 29.630 0.00 0.00 44.22 2.27
186 187 9.155975 AGATCGATATAATTCCAATCTTTTCCG 57.844 33.333 0.00 0.00 0.00 4.30
187 188 8.848474 ATCGATATAATTCCAATCTTTTCCGT 57.152 30.769 0.00 0.00 0.00 4.69
188 189 9.938280 ATCGATATAATTCCAATCTTTTCCGTA 57.062 29.630 0.00 0.00 0.00 4.02
189 190 9.199982 TCGATATAATTCCAATCTTTTCCGTAC 57.800 33.333 0.00 0.00 0.00 3.67
190 191 8.440833 CGATATAATTCCAATCTTTTCCGTACC 58.559 37.037 0.00 0.00 0.00 3.34
191 192 6.954487 ATAATTCCAATCTTTTCCGTACCC 57.046 37.500 0.00 0.00 0.00 3.69
192 193 2.793288 TCCAATCTTTTCCGTACCCC 57.207 50.000 0.00 0.00 0.00 4.95
193 194 2.271777 TCCAATCTTTTCCGTACCCCT 58.728 47.619 0.00 0.00 0.00 4.79
194 195 3.452878 TCCAATCTTTTCCGTACCCCTA 58.547 45.455 0.00 0.00 0.00 3.53
195 196 4.042174 TCCAATCTTTTCCGTACCCCTAT 58.958 43.478 0.00 0.00 0.00 2.57
196 197 5.218179 TCCAATCTTTTCCGTACCCCTATA 58.782 41.667 0.00 0.00 0.00 1.31
197 198 5.306160 TCCAATCTTTTCCGTACCCCTATAG 59.694 44.000 0.00 0.00 0.00 1.31
198 199 5.512576 CCAATCTTTTCCGTACCCCTATAGG 60.513 48.000 12.27 12.27 0.00 2.57
199 200 4.270317 TCTTTTCCGTACCCCTATAGGT 57.730 45.455 17.72 3.45 44.37 3.08
200 201 5.402054 TCTTTTCCGTACCCCTATAGGTA 57.598 43.478 17.72 2.42 41.58 3.08
209 210 4.913154 ACCCCTATAGGTACCTCAAAGA 57.087 45.455 20.32 0.00 38.79 2.52
210 211 5.230746 ACCCCTATAGGTACCTCAAAGAA 57.769 43.478 20.32 0.00 38.79 2.52
211 212 5.606761 ACCCCTATAGGTACCTCAAAGAAA 58.393 41.667 20.32 0.00 38.79 2.52
212 213 6.034003 ACCCCTATAGGTACCTCAAAGAAAA 58.966 40.000 20.32 0.00 38.79 2.29
213 214 6.158169 ACCCCTATAGGTACCTCAAAGAAAAG 59.842 42.308 20.32 5.36 38.79 2.27
214 215 6.056236 CCCTATAGGTACCTCAAAGAAAAGC 58.944 44.000 20.32 0.00 0.00 3.51
215 216 6.126739 CCCTATAGGTACCTCAAAGAAAAGCT 60.127 42.308 20.32 0.00 0.00 3.74
216 217 7.070821 CCCTATAGGTACCTCAAAGAAAAGCTA 59.929 40.741 20.32 0.00 0.00 3.32
217 218 8.145122 CCTATAGGTACCTCAAAGAAAAGCTAG 58.855 40.741 20.32 0.00 0.00 3.42
218 219 5.827326 AGGTACCTCAAAGAAAAGCTAGT 57.173 39.130 9.21 0.00 0.00 2.57
219 220 6.189036 AGGTACCTCAAAGAAAAGCTAGTT 57.811 37.500 9.21 0.00 0.00 2.24
220 221 6.231951 AGGTACCTCAAAGAAAAGCTAGTTC 58.768 40.000 9.21 2.50 0.00 3.01
229 230 0.685097 AAAGCTAGTTCGAGGTGGCA 59.315 50.000 7.11 0.00 0.00 4.92
289 290 1.080354 TGTAGGGGAGGGTGTGAGG 59.920 63.158 0.00 0.00 0.00 3.86
337 1000 3.524606 GCCATGAGCAGCGGCAAT 61.525 61.111 12.44 0.99 45.52 3.56
368 1031 0.725117 GCGTTGTAATCCTTGTCGGG 59.275 55.000 0.00 0.00 0.00 5.14
384 1047 1.076485 GGGGGAGCTGCATCATTGT 60.076 57.895 7.79 0.00 0.00 2.71
418 1081 0.609662 CATGGTCTTTGCTTTGGGGG 59.390 55.000 0.00 0.00 0.00 5.40
421 1084 1.343478 TGGTCTTTGCTTTGGGGGAAA 60.343 47.619 0.00 0.00 0.00 3.13
422 1085 1.765904 GGTCTTTGCTTTGGGGGAAAA 59.234 47.619 0.00 0.00 0.00 2.29
425 1088 1.488393 CTTTGCTTTGGGGGAAAACCA 59.512 47.619 0.00 0.00 42.91 3.67
436 1099 1.186200 GGAAAACCATGCTCCCCTTC 58.814 55.000 0.00 0.00 0.00 3.46
453 1116 3.902218 CCTTCTGGGATAGAAAATGGCA 58.098 45.455 0.00 0.00 44.47 4.92
460 1123 4.072131 GGGATAGAAAATGGCAGCGATTA 58.928 43.478 2.68 0.00 0.00 1.75
465 1128 4.009675 AGAAAATGGCAGCGATTACTTCA 58.990 39.130 13.83 0.00 0.00 3.02
466 1129 4.641989 AGAAAATGGCAGCGATTACTTCAT 59.358 37.500 13.83 0.00 0.00 2.57
468 1131 2.689553 TGGCAGCGATTACTTCATCA 57.310 45.000 0.00 0.00 0.00 3.07
499 1162 1.980765 TGGAGACATTGTCTTGGAGCT 59.019 47.619 19.88 0.00 43.53 4.09
510 1173 3.119459 TGTCTTGGAGCTAACTCGATCAC 60.119 47.826 0.00 0.00 44.48 3.06
513 1176 2.388735 TGGAGCTAACTCGATCACCAT 58.611 47.619 0.00 0.00 44.48 3.55
520 1183 2.073252 ACTCGATCACCATAGCCAGA 57.927 50.000 0.00 0.00 0.00 3.86
522 1185 0.676184 TCGATCACCATAGCCAGAGC 59.324 55.000 0.00 0.00 40.32 4.09
532 1195 1.527034 TAGCCAGAGCAGCTTGTTTG 58.473 50.000 0.00 0.00 43.56 2.93
534 1197 1.288127 CCAGAGCAGCTTGTTTGGC 59.712 57.895 0.00 0.00 0.00 4.52
543 1206 0.527385 GCTTGTTTGGCGTTGCTTCA 60.527 50.000 0.00 0.00 0.00 3.02
544 1207 1.919918 CTTGTTTGGCGTTGCTTCAA 58.080 45.000 0.00 0.00 0.00 2.69
552 1215 0.663153 GCGTTGCTTCAAAGTGAGGT 59.337 50.000 0.00 0.00 0.00 3.85
564 1227 4.038042 TCAAAGTGAGGTCTATGGATAGCG 59.962 45.833 0.00 0.00 0.00 4.26
565 1228 3.510531 AGTGAGGTCTATGGATAGCGA 57.489 47.619 0.00 0.00 0.00 4.93
577 1240 2.092968 TGGATAGCGACTTGAGGCAAAT 60.093 45.455 0.00 0.00 0.00 2.32
592 1256 1.538204 GCAAATGGCATGGATCTGCAG 60.538 52.381 7.63 7.63 44.12 4.41
616 1280 4.127171 GGCGATAGTGATTTTTCTGGCTA 58.873 43.478 0.00 0.00 39.35 3.93
629 1293 3.151022 GGCTAGGCCGCAGTCTCT 61.151 66.667 4.61 0.00 39.62 3.10
634 1298 0.323087 TAGGCCGCAGTCTCTGTGTA 60.323 55.000 0.00 0.00 39.99 2.90
645 1309 0.038526 CTCTGTGTAAGACGCCGGTT 60.039 55.000 1.90 0.00 0.00 4.44
646 1310 1.200716 CTCTGTGTAAGACGCCGGTTA 59.799 52.381 1.90 0.00 0.00 2.85
647 1311 1.200716 TCTGTGTAAGACGCCGGTTAG 59.799 52.381 1.90 0.00 0.00 2.34
648 1312 0.244450 TGTGTAAGACGCCGGTTAGG 59.756 55.000 1.90 0.00 44.97 2.69
659 1323 4.390048 GGTTAGGCCGCAGTTCAA 57.610 55.556 0.00 0.00 0.00 2.69
660 1324 2.636299 GGTTAGGCCGCAGTTCAAA 58.364 52.632 0.00 0.00 0.00 2.69
661 1325 0.955905 GGTTAGGCCGCAGTTCAAAA 59.044 50.000 0.00 0.00 0.00 2.44
662 1326 1.338655 GGTTAGGCCGCAGTTCAAAAA 59.661 47.619 0.00 0.00 0.00 1.94
663 1327 2.029380 GGTTAGGCCGCAGTTCAAAAAT 60.029 45.455 0.00 0.00 0.00 1.82
664 1328 3.242518 GTTAGGCCGCAGTTCAAAAATC 58.757 45.455 0.00 0.00 0.00 2.17
665 1329 1.620822 AGGCCGCAGTTCAAAAATCT 58.379 45.000 0.00 0.00 0.00 2.40
666 1330 1.541588 AGGCCGCAGTTCAAAAATCTC 59.458 47.619 0.00 0.00 0.00 2.75
667 1331 1.269448 GGCCGCAGTTCAAAAATCTCA 59.731 47.619 0.00 0.00 0.00 3.27
668 1332 2.094545 GGCCGCAGTTCAAAAATCTCAT 60.095 45.455 0.00 0.00 0.00 2.90
669 1333 3.578688 GCCGCAGTTCAAAAATCTCATT 58.421 40.909 0.00 0.00 0.00 2.57
675 1339 4.774200 CAGTTCAAAAATCTCATTCCCCCT 59.226 41.667 0.00 0.00 0.00 4.79
692 1356 2.004733 CCCTTTGGGTTATCGAACGTC 58.995 52.381 0.00 0.00 38.25 4.34
694 1358 2.613474 CCTTTGGGTTATCGAACGTCCA 60.613 50.000 0.00 0.00 36.32 4.02
698 1362 3.474600 TGGGTTATCGAACGTCCAAAAA 58.525 40.909 0.00 0.00 36.32 1.94
702 1366 5.106436 GGGTTATCGAACGTCCAAAAATCTT 60.106 40.000 0.00 0.00 36.32 2.40
703 1367 6.092533 GGGTTATCGAACGTCCAAAAATCTTA 59.907 38.462 0.00 0.00 36.32 2.10
711 1375 4.264217 ACGTCCAAAAATCTTATTCCCCCT 60.264 41.667 0.00 0.00 0.00 4.79
714 1378 6.406370 GTCCAAAAATCTTATTCCCCCTTTG 58.594 40.000 0.00 0.00 0.00 2.77
734 1398 2.232941 TGGGTTAGCGTAGACTGGAAAG 59.767 50.000 0.00 0.00 0.00 2.62
744 1408 0.251787 GACTGGAAAGGGGTGGCATT 60.252 55.000 0.00 0.00 0.00 3.56
761 1425 3.243501 GGCATTACCACCGACGTTAGATA 60.244 47.826 0.00 0.00 38.86 1.98
795 1459 1.204146 GAGATTGCACCCTAGGACCA 58.796 55.000 11.48 0.72 0.00 4.02
805 1469 3.006728 TAGGACCAACCCCAGGCG 61.007 66.667 0.00 0.00 40.05 5.52
897 1569 1.340017 CCCTTCGAGAAATTCTGCCCA 60.340 52.381 0.00 0.00 0.00 5.36
912 1584 1.079127 CCCAAGATTCCGCACGAGT 60.079 57.895 0.00 0.00 0.00 4.18
1408 2087 0.629596 CCCCTTTCCCCTTTCCTACC 59.370 60.000 0.00 0.00 0.00 3.18
1412 2091 0.702316 TTTCCCCTTTCCTACCAGGC 59.298 55.000 0.00 0.00 34.61 4.85
1432 2111 0.439985 CGCTTCTGTGTGTGATTCCG 59.560 55.000 0.00 0.00 0.00 4.30
1434 2113 2.143122 GCTTCTGTGTGTGATTCCGAA 58.857 47.619 0.00 0.00 0.00 4.30
1450 2130 1.666888 CCGAATGGTGCTTTGCTGAAC 60.667 52.381 0.00 0.00 0.00 3.18
1458 2138 3.240069 GTGCTTTGCTGAACTGCTAATG 58.760 45.455 5.42 2.96 0.00 1.90
1479 2159 1.554042 TTGTTTCGCTTCGTCTCGGC 61.554 55.000 0.00 0.00 0.00 5.54
1480 2160 1.733399 GTTTCGCTTCGTCTCGGCT 60.733 57.895 0.00 0.00 0.00 5.52
1491 2176 1.069159 CGTCTCGGCTGCGTAGATAAT 60.069 52.381 4.08 0.00 0.00 1.28
1641 2326 2.203153 AAAGGCGAGTGCAACCGT 60.203 55.556 10.13 0.00 45.35 4.83
1644 2329 4.980805 GGCGAGTGCAACCGTGGA 62.981 66.667 10.13 0.00 45.35 4.02
1650 2335 2.359850 TGCAACCGTGGAGATGCC 60.360 61.111 11.46 0.00 38.00 4.40
1761 2446 0.855349 CTATTCACCATCGTGCTCGC 59.145 55.000 2.69 0.00 40.04 5.03
1801 2657 3.351740 TGAACACTGTGAGGCAAAAAGA 58.648 40.909 15.86 0.00 0.00 2.52
1988 2844 0.394352 GGTTCATGGCAGGGTACTGG 60.394 60.000 0.00 0.00 45.04 4.00
1993 2849 1.274703 ATGGCAGGGTACTGGTCCAG 61.275 60.000 17.88 17.88 45.04 3.86
2059 2915 1.970917 GCGATTCACAACCTGCCTCG 61.971 60.000 0.00 0.00 0.00 4.63
2150 3006 6.819146 GGGAGTAGAAAATTAGTTCCTGACAG 59.181 42.308 0.00 0.00 0.00 3.51
2162 5486 3.685139 TCCTGACAGTTCACTCCAATC 57.315 47.619 0.93 0.00 0.00 2.67
2177 5501 5.408299 CACTCCAATCGTCTGTGAAATAACA 59.592 40.000 0.00 0.00 0.00 2.41
2193 5518 9.988350 GTGAAATAACAGTCTGTGGTAATAATG 57.012 33.333 6.18 0.00 29.90 1.90
2491 5816 3.054878 CTGCTTCTCCAAATGCACAAAC 58.945 45.455 0.00 0.00 0.00 2.93
3352 7064 0.527565 ATTGTCGCTTTGGGCATGAC 59.472 50.000 0.00 0.00 41.91 3.06
3438 7151 1.261480 TGGTTATGGGTGCGCATTTT 58.739 45.000 15.91 1.37 0.00 1.82
3483 9409 9.706691 AATATGTCCTTTATACTTGGTCGTATG 57.293 33.333 0.00 0.00 32.63 2.39
3518 9444 4.116961 TGTTGTTCAGTCGTTCCAGTAAG 58.883 43.478 0.00 0.00 0.00 2.34
3519 9445 2.750948 TGTTCAGTCGTTCCAGTAAGC 58.249 47.619 0.00 0.00 0.00 3.09
3520 9446 2.067013 GTTCAGTCGTTCCAGTAAGCC 58.933 52.381 0.00 0.00 0.00 4.35
3521 9447 1.334160 TCAGTCGTTCCAGTAAGCCA 58.666 50.000 0.00 0.00 0.00 4.75
3546 9479 4.357996 GCTTGGCAGCTAATTCTGATTTC 58.642 43.478 0.00 0.00 43.51 2.17
3547 9480 4.142315 GCTTGGCAGCTAATTCTGATTTCA 60.142 41.667 0.00 0.00 43.51 2.69
3554 9488 7.381678 GGCAGCTAATTCTGATTTCATGAATTC 59.618 37.037 19.03 19.03 39.90 2.17
3573 9507 7.765307 TGAATTCTATTTTCAGAGGAATGCAC 58.235 34.615 7.05 0.00 29.94 4.57
3574 9508 6.705863 ATTCTATTTTCAGAGGAATGCACC 57.294 37.500 0.00 0.00 31.93 5.01
3575 9509 5.178096 TCTATTTTCAGAGGAATGCACCA 57.822 39.130 0.00 0.00 31.93 4.17
3577 9511 6.009589 TCTATTTTCAGAGGAATGCACCAAA 58.990 36.000 0.00 0.00 31.93 3.28
3625 9609 5.342017 TCCCTGACAGGAATAAAGAAGAGA 58.658 41.667 23.77 3.87 37.67 3.10
3670 9654 4.332268 GTCAATCCTCAAGATCAGAGTTGC 59.668 45.833 12.47 6.12 32.47 4.17
3699 9684 2.288458 CCGAGATTCTAGGTCGAGACAC 59.712 54.545 4.75 0.00 35.70 3.67
3765 9750 0.397816 CCCCCGAGAGATCAAGAGGT 60.398 60.000 0.00 0.00 0.00 3.85
3837 9822 1.771255 GATAGGGACAGGAACAGGCAT 59.229 52.381 0.00 0.00 0.00 4.40
3915 9999 6.191657 AGAGAAGATAGATCAGAGAGCAGA 57.808 41.667 0.00 0.00 0.00 4.26
3936 10020 0.452585 GGTCTAGGCACGACAGAGAC 59.547 60.000 0.00 0.00 36.60 3.36
3949 10033 2.041686 AGAGACTCTGGTCGCCGTC 61.042 63.158 3.56 0.00 46.29 4.79
3985 10071 1.543358 ACGAAGAGGAAGAACGGTACC 59.457 52.381 0.16 0.16 0.00 3.34
4039 10141 1.336887 TGCCGTTGCTGTTCTAGTCTC 60.337 52.381 0.00 0.00 38.71 3.36
4093 10196 8.154649 ACAATTTTGTTAGTCCTTAGTCTGTG 57.845 34.615 0.00 0.00 38.47 3.66
4094 10197 6.803154 ATTTTGTTAGTCCTTAGTCTGTGC 57.197 37.500 0.00 0.00 0.00 4.57
4095 10198 5.546621 TTTGTTAGTCCTTAGTCTGTGCT 57.453 39.130 0.00 0.00 0.00 4.40
4096 10199 6.659745 TTTGTTAGTCCTTAGTCTGTGCTA 57.340 37.500 0.00 0.00 0.00 3.49
4098 10201 5.567430 TGTTAGTCCTTAGTCTGTGCTAGA 58.433 41.667 0.00 0.00 0.00 2.43
4101 10204 7.999545 TGTTAGTCCTTAGTCTGTGCTAGATAT 59.000 37.037 0.00 0.00 37.83 1.63
4102 10205 8.852135 GTTAGTCCTTAGTCTGTGCTAGATATT 58.148 37.037 0.00 0.00 37.83 1.28
4103 10206 7.519032 AGTCCTTAGTCTGTGCTAGATATTC 57.481 40.000 0.00 0.00 37.83 1.75
4104 10207 7.063593 AGTCCTTAGTCTGTGCTAGATATTCA 58.936 38.462 0.00 0.00 37.83 2.57
4105 10208 7.230510 AGTCCTTAGTCTGTGCTAGATATTCAG 59.769 40.741 0.00 0.00 37.83 3.02
4110 10216 4.342378 GTCTGTGCTAGATATTCAGGGTGA 59.658 45.833 0.00 0.00 37.83 4.02
4111 10217 4.342378 TCTGTGCTAGATATTCAGGGTGAC 59.658 45.833 0.00 0.00 0.00 3.67
4113 10219 4.655649 TGTGCTAGATATTCAGGGTGACAT 59.344 41.667 0.00 0.00 0.00 3.06
4132 10239 6.017109 GTGACATCTGCTTGTTCTTTTCCTTA 60.017 38.462 0.00 0.00 0.00 2.69
4161 10269 6.210584 AGTTTTTGAACATACTAACCCATGGG 59.789 38.462 30.23 30.23 42.03 4.00
4174 10282 0.108041 CCATGGGTGATTTTGCAGGC 60.108 55.000 2.85 0.00 0.00 4.85
4177 10285 2.530460 TGGGTGATTTTGCAGGCTAT 57.470 45.000 0.00 0.00 0.00 2.97
4178 10286 3.660970 TGGGTGATTTTGCAGGCTATA 57.339 42.857 0.00 0.00 0.00 1.31
4191 10299 6.186420 TGCAGGCTATATTAACTCAATCCA 57.814 37.500 0.00 0.00 0.00 3.41
4192 10300 6.782986 TGCAGGCTATATTAACTCAATCCAT 58.217 36.000 0.00 0.00 0.00 3.41
4193 10301 6.656270 TGCAGGCTATATTAACTCAATCCATG 59.344 38.462 0.00 0.00 0.00 3.66
4208 10316 3.507162 TCCATGATTGGTTCACACAGT 57.493 42.857 0.00 0.00 44.06 3.55
4210 10318 4.979335 TCCATGATTGGTTCACACAGTAA 58.021 39.130 0.00 0.00 44.06 2.24
4216 10329 6.061441 TGATTGGTTCACACAGTAATGTTCT 58.939 36.000 0.00 0.00 0.00 3.01
4222 10335 9.733556 TGGTTCACACAGTAATGTTCTTTATAT 57.266 29.630 0.00 0.00 0.00 0.86
4250 10476 7.438459 GTCATAGTAACAACTATCTGGCGAATT 59.562 37.037 0.00 0.00 31.09 2.17
4256 10482 6.811253 ACAACTATCTGGCGAATTTTGTAA 57.189 33.333 0.00 0.00 0.00 2.41
4257 10483 7.391148 ACAACTATCTGGCGAATTTTGTAAT 57.609 32.000 0.00 0.00 0.00 1.89
4262 10488 8.612619 ACTATCTGGCGAATTTTGTAATACTTG 58.387 33.333 0.00 0.00 0.00 3.16
4263 10489 6.811253 TCTGGCGAATTTTGTAATACTTGT 57.189 33.333 0.00 0.00 0.00 3.16
4265 10491 5.704888 TGGCGAATTTTGTAATACTTGTGG 58.295 37.500 0.00 0.00 0.00 4.17
4266 10492 5.241949 TGGCGAATTTTGTAATACTTGTGGT 59.758 36.000 0.00 0.00 0.00 4.16
4269 10495 7.808856 GGCGAATTTTGTAATACTTGTGGTAAA 59.191 33.333 0.00 0.00 33.74 2.01
4302 10557 7.708998 TGTAAAATTACCAGAAAACTGACACC 58.291 34.615 0.00 0.00 32.72 4.16
4305 10560 6.575162 AATTACCAGAAAACTGACACCATC 57.425 37.500 0.00 0.00 0.00 3.51
4316 10571 3.708403 TGACACCATCAGAGCAAAGAT 57.292 42.857 0.00 0.00 31.91 2.40
4322 10800 5.763698 ACACCATCAGAGCAAAGATATCATG 59.236 40.000 5.32 4.90 0.00 3.07
4339 10817 9.399797 AGATATCATGCTTGAACAATTCTGTTA 57.600 29.630 6.36 0.00 45.98 2.41
4343 10821 7.487484 TCATGCTTGAACAATTCTGTTAAACA 58.513 30.769 0.00 0.00 45.98 2.83
4387 10887 3.604875 ATGGAATGGCAGAAAAGCAAG 57.395 42.857 0.00 0.00 35.83 4.01
4437 10938 8.577048 TGACTGAACTTATTACACTAGCTACT 57.423 34.615 0.00 0.00 0.00 2.57
4451 10952 6.600822 ACACTAGCTACTACTGTTTATTCGGA 59.399 38.462 0.00 0.00 0.00 4.55
4542 11049 3.164268 TGAAAGCAAACATGCCCTACAT 58.836 40.909 0.00 0.00 40.66 2.29
4573 11088 2.981909 AGGAACGTCGACTCGGCA 60.982 61.111 14.70 0.00 34.94 5.69
4585 11100 1.227350 CTCGGCAAGATCGATGGCA 60.227 57.895 21.77 11.76 43.00 4.92
4708 11223 4.707840 CGTGCGTTGCTGCTGTCG 62.708 66.667 0.00 4.37 35.36 4.35
4793 11308 4.443857 CGATGTCCATGTCGCCAT 57.556 55.556 0.00 0.00 0.00 4.40
4807 11322 0.755079 CGCCATGGAAGGAGATCTGA 59.245 55.000 18.40 0.00 0.00 3.27
4905 11424 0.329261 TCAGAAGGAAGCATGTGGGG 59.671 55.000 0.00 0.00 0.00 4.96
4941 11460 1.905894 TCAGGGTTGAATCATGGACGA 59.094 47.619 0.00 0.00 0.00 4.20
4951 11470 7.009540 GGTTGAATCATGGACGAATTGAATTTC 59.990 37.037 0.00 0.00 0.00 2.17
4966 11485 9.248291 GAATTGAATTTCAACAACAGCTTTCTA 57.752 29.630 13.80 0.00 39.45 2.10
4970 11489 8.632679 TGAATTTCAACAACAGCTTTCTAGAAT 58.367 29.630 5.89 0.00 0.00 2.40
4973 11492 6.228273 TCAACAACAGCTTTCTAGAATTCG 57.772 37.500 5.89 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.620886 GGCTCTACAGACTGGTGGTAGA 60.621 54.545 7.51 4.11 40.71 2.59
3 4 1.751924 GGCTCTACAGACTGGTGGTAG 59.248 57.143 7.51 0.00 36.65 3.18
5 6 0.178932 TGGCTCTACAGACTGGTGGT 60.179 55.000 7.51 0.00 0.00 4.16
6 7 1.198713 ATGGCTCTACAGACTGGTGG 58.801 55.000 7.51 0.00 0.00 4.61
7 8 3.005554 CAAATGGCTCTACAGACTGGTG 58.994 50.000 7.51 0.00 0.00 4.17
8 9 2.616510 GCAAATGGCTCTACAGACTGGT 60.617 50.000 7.51 0.00 40.25 4.00
9 10 2.012673 GCAAATGGCTCTACAGACTGG 58.987 52.381 7.51 0.00 40.25 4.00
20 21 8.233550 AACTAGGTGTTTACATAGCAAATGGCT 61.234 37.037 0.00 0.00 46.13 4.75
21 22 4.718940 AGGTGTTTACATAGCAAATGGC 57.281 40.909 4.34 0.00 45.30 4.40
22 23 7.391148 AACTAGGTGTTTACATAGCAAATGG 57.609 36.000 0.00 0.00 43.18 3.16
32 33 7.825270 TCTGAAAGTGAAAACTAGGTGTTTACA 59.175 33.333 0.00 0.00 40.81 2.41
33 34 8.205131 TCTGAAAGTGAAAACTAGGTGTTTAC 57.795 34.615 0.00 0.00 40.81 2.01
34 35 8.974060 ATCTGAAAGTGAAAACTAGGTGTTTA 57.026 30.769 0.00 0.00 40.81 2.01
35 36 7.881775 ATCTGAAAGTGAAAACTAGGTGTTT 57.118 32.000 0.00 0.00 42.37 2.83
36 37 7.775561 AGAATCTGAAAGTGAAAACTAGGTGTT 59.224 33.333 0.00 0.00 36.22 3.32
37 38 7.283329 AGAATCTGAAAGTGAAAACTAGGTGT 58.717 34.615 0.00 0.00 33.76 4.16
38 39 7.359598 CGAGAATCTGAAAGTGAAAACTAGGTG 60.360 40.741 0.00 0.00 33.76 4.00
39 40 6.647067 CGAGAATCTGAAAGTGAAAACTAGGT 59.353 38.462 0.00 0.00 33.76 3.08
40 41 6.868864 TCGAGAATCTGAAAGTGAAAACTAGG 59.131 38.462 0.00 0.00 33.76 3.02
41 42 7.875316 TCGAGAATCTGAAAGTGAAAACTAG 57.125 36.000 0.00 0.00 33.76 2.57
42 43 9.355215 GTATCGAGAATCTGAAAGTGAAAACTA 57.645 33.333 0.00 0.00 33.76 2.24
43 44 7.332182 GGTATCGAGAATCTGAAAGTGAAAACT 59.668 37.037 0.00 0.00 33.76 2.66
44 45 7.413109 GGGTATCGAGAATCTGAAAGTGAAAAC 60.413 40.741 0.00 0.00 33.76 2.43
45 46 6.594159 GGGTATCGAGAATCTGAAAGTGAAAA 59.406 38.462 0.00 0.00 33.76 2.29
46 47 6.106673 GGGTATCGAGAATCTGAAAGTGAAA 58.893 40.000 0.00 0.00 33.76 2.69
47 48 5.186992 TGGGTATCGAGAATCTGAAAGTGAA 59.813 40.000 0.00 0.00 33.76 3.18
48 49 4.709886 TGGGTATCGAGAATCTGAAAGTGA 59.290 41.667 0.00 0.00 33.76 3.41
49 50 5.011090 TGGGTATCGAGAATCTGAAAGTG 57.989 43.478 0.00 0.00 33.76 3.16
50 51 5.665459 CTTGGGTATCGAGAATCTGAAAGT 58.335 41.667 0.00 0.00 33.76 2.66
51 52 4.509600 GCTTGGGTATCGAGAATCTGAAAG 59.490 45.833 0.00 0.00 0.00 2.62
52 53 4.442706 GCTTGGGTATCGAGAATCTGAAA 58.557 43.478 0.00 0.00 0.00 2.69
53 54 3.181465 GGCTTGGGTATCGAGAATCTGAA 60.181 47.826 0.00 0.00 0.00 3.02
54 55 2.365617 GGCTTGGGTATCGAGAATCTGA 59.634 50.000 0.00 0.00 0.00 3.27
55 56 2.103094 TGGCTTGGGTATCGAGAATCTG 59.897 50.000 0.00 0.00 0.00 2.90
56 57 2.103263 GTGGCTTGGGTATCGAGAATCT 59.897 50.000 0.00 0.00 0.00 2.40
57 58 2.484889 GTGGCTTGGGTATCGAGAATC 58.515 52.381 0.00 0.00 0.00 2.52
58 59 1.141053 GGTGGCTTGGGTATCGAGAAT 59.859 52.381 0.00 0.00 0.00 2.40
59 60 0.539986 GGTGGCTTGGGTATCGAGAA 59.460 55.000 0.00 0.00 0.00 2.87
60 61 0.325296 AGGTGGCTTGGGTATCGAGA 60.325 55.000 0.00 0.00 0.00 4.04
61 62 0.541863 AAGGTGGCTTGGGTATCGAG 59.458 55.000 0.00 0.00 0.00 4.04
62 63 0.251916 CAAGGTGGCTTGGGTATCGA 59.748 55.000 0.00 0.00 0.00 3.59
63 64 2.780595 CAAGGTGGCTTGGGTATCG 58.219 57.895 0.00 0.00 0.00 2.92
70 71 1.237285 CGAAGGACCAAGGTGGCTTG 61.237 60.000 0.00 0.00 42.67 4.01
71 72 1.073199 CGAAGGACCAAGGTGGCTT 59.927 57.895 0.00 0.00 42.67 4.35
72 73 2.750350 CGAAGGACCAAGGTGGCT 59.250 61.111 0.00 0.00 42.67 4.75
79 80 8.717573 ACATTATTTGTAGCCCGAAGGACCAA 62.718 42.308 0.00 0.00 45.33 3.67
80 81 7.330659 ACATTATTTGTAGCCCGAAGGACCA 62.331 44.000 0.00 0.00 45.33 4.02
81 82 4.926145 ACATTATTTGTAGCCCGAAGGACC 60.926 45.833 0.00 0.00 45.33 4.46
82 83 4.196971 ACATTATTTGTAGCCCGAAGGAC 58.803 43.478 0.00 0.00 45.33 3.85
83 84 4.448210 GACATTATTTGTAGCCCGAAGGA 58.552 43.478 0.00 0.00 46.87 3.36
84 85 3.564225 GGACATTATTTGTAGCCCGAAGG 59.436 47.826 0.00 0.00 44.23 3.46
85 86 3.564225 GGGACATTATTTGTAGCCCGAAG 59.436 47.826 0.00 0.00 39.18 3.79
86 87 3.054287 TGGGACATTATTTGTAGCCCGAA 60.054 43.478 0.00 0.00 42.73 4.30
87 88 2.506231 TGGGACATTATTTGTAGCCCGA 59.494 45.455 0.00 0.00 42.73 5.14
88 89 2.925724 TGGGACATTATTTGTAGCCCG 58.074 47.619 0.00 0.00 42.73 6.13
103 104 9.705592 ACTAAGTATAGGTTGGCCAAATGGGAC 62.706 44.444 22.47 15.58 38.21 4.46
104 105 2.856231 AGTATAGGTTGGCCAAATGGGA 59.144 45.455 22.47 4.42 40.01 4.37
105 106 3.312736 AGTATAGGTTGGCCAAATGGG 57.687 47.619 22.47 0.00 40.85 4.00
106 107 5.445964 ACTAAGTATAGGTTGGCCAAATGG 58.554 41.667 22.47 3.95 37.19 3.16
107 108 7.404671 AAACTAAGTATAGGTTGGCCAAATG 57.595 36.000 22.47 0.59 37.66 2.32
108 109 7.453439 ACAAAACTAAGTATAGGTTGGCCAAAT 59.547 33.333 22.47 14.81 38.11 2.32
109 110 6.778559 ACAAAACTAAGTATAGGTTGGCCAAA 59.221 34.615 22.47 5.00 38.11 3.28
110 111 6.308566 ACAAAACTAAGTATAGGTTGGCCAA 58.691 36.000 16.05 16.05 38.11 4.52
111 112 5.883180 ACAAAACTAAGTATAGGTTGGCCA 58.117 37.500 0.00 0.00 38.11 5.36
112 113 6.829229 AACAAAACTAAGTATAGGTTGGCC 57.171 37.500 0.00 0.00 38.11 5.36
113 114 8.354426 TGAAAACAAAACTAAGTATAGGTTGGC 58.646 33.333 0.00 0.00 38.11 4.52
123 124 8.611757 GGCAAATTGATGAAAACAAAACTAAGT 58.388 29.630 0.00 0.00 30.45 2.24
124 125 8.610896 TGGCAAATTGATGAAAACAAAACTAAG 58.389 29.630 0.00 0.00 30.45 2.18
125 126 8.498054 TGGCAAATTGATGAAAACAAAACTAA 57.502 26.923 0.00 0.00 30.45 2.24
126 127 7.984050 TCTGGCAAATTGATGAAAACAAAACTA 59.016 29.630 0.00 0.00 30.45 2.24
127 128 6.822676 TCTGGCAAATTGATGAAAACAAAACT 59.177 30.769 0.00 0.00 30.45 2.66
128 129 7.014092 TCTGGCAAATTGATGAAAACAAAAC 57.986 32.000 0.00 0.00 30.45 2.43
129 130 7.621428 TTCTGGCAAATTGATGAAAACAAAA 57.379 28.000 0.00 0.00 30.45 2.44
130 131 7.621428 TTTCTGGCAAATTGATGAAAACAAA 57.379 28.000 0.00 0.00 30.45 2.83
131 132 7.621428 TTTTCTGGCAAATTGATGAAAACAA 57.379 28.000 13.04 0.00 31.51 2.83
132 133 7.621428 TTTTTCTGGCAAATTGATGAAAACA 57.379 28.000 15.16 8.50 34.52 2.83
133 134 7.531534 CGATTTTTCTGGCAAATTGATGAAAAC 59.468 33.333 15.16 8.50 34.52 2.43
134 135 7.440556 TCGATTTTTCTGGCAAATTGATGAAAA 59.559 29.630 13.04 13.04 31.62 2.29
135 136 6.927936 TCGATTTTTCTGGCAAATTGATGAAA 59.072 30.769 0.00 1.18 31.62 2.69
136 137 6.453943 TCGATTTTTCTGGCAAATTGATGAA 58.546 32.000 0.00 0.00 31.62 2.57
137 138 6.023357 TCGATTTTTCTGGCAAATTGATGA 57.977 33.333 0.00 0.00 31.62 2.92
138 139 6.094719 TCTCGATTTTTCTGGCAAATTGATG 58.905 36.000 0.00 0.00 34.75 3.07
139 140 6.271488 TCTCGATTTTTCTGGCAAATTGAT 57.729 33.333 0.00 0.00 34.75 2.57
140 141 5.703978 TCTCGATTTTTCTGGCAAATTGA 57.296 34.783 0.00 0.00 34.29 2.57
141 142 5.228635 CGATCTCGATTTTTCTGGCAAATTG 59.771 40.000 0.00 0.00 43.02 2.32
142 143 5.123820 TCGATCTCGATTTTTCTGGCAAATT 59.876 36.000 0.00 0.00 44.22 1.82
143 144 4.635765 TCGATCTCGATTTTTCTGGCAAAT 59.364 37.500 0.00 0.00 44.22 2.32
144 145 4.000325 TCGATCTCGATTTTTCTGGCAAA 59.000 39.130 0.00 0.00 44.22 3.68
145 146 3.595173 TCGATCTCGATTTTTCTGGCAA 58.405 40.909 0.00 0.00 44.22 4.52
146 147 3.245518 TCGATCTCGATTTTTCTGGCA 57.754 42.857 0.00 0.00 44.22 4.92
160 161 9.155975 CGGAAAAGATTGGAATTATATCGATCT 57.844 33.333 0.00 0.00 0.00 2.75
161 162 8.936864 ACGGAAAAGATTGGAATTATATCGATC 58.063 33.333 0.00 0.00 0.00 3.69
162 163 8.848474 ACGGAAAAGATTGGAATTATATCGAT 57.152 30.769 2.16 2.16 0.00 3.59
163 164 9.199982 GTACGGAAAAGATTGGAATTATATCGA 57.800 33.333 0.00 0.00 0.00 3.59
164 165 8.440833 GGTACGGAAAAGATTGGAATTATATCG 58.559 37.037 0.00 0.00 0.00 2.92
165 166 8.727910 GGGTACGGAAAAGATTGGAATTATATC 58.272 37.037 0.00 0.00 0.00 1.63
166 167 7.668469 GGGGTACGGAAAAGATTGGAATTATAT 59.332 37.037 0.00 0.00 0.00 0.86
167 168 6.999871 GGGGTACGGAAAAGATTGGAATTATA 59.000 38.462 0.00 0.00 0.00 0.98
168 169 5.831525 GGGGTACGGAAAAGATTGGAATTAT 59.168 40.000 0.00 0.00 0.00 1.28
169 170 5.044698 AGGGGTACGGAAAAGATTGGAATTA 60.045 40.000 0.00 0.00 0.00 1.40
170 171 4.021229 GGGGTACGGAAAAGATTGGAATT 58.979 43.478 0.00 0.00 0.00 2.17
171 172 3.268595 AGGGGTACGGAAAAGATTGGAAT 59.731 43.478 0.00 0.00 0.00 3.01
172 173 2.645797 AGGGGTACGGAAAAGATTGGAA 59.354 45.455 0.00 0.00 0.00 3.53
173 174 2.271777 AGGGGTACGGAAAAGATTGGA 58.728 47.619 0.00 0.00 0.00 3.53
174 175 2.801077 AGGGGTACGGAAAAGATTGG 57.199 50.000 0.00 0.00 0.00 3.16
175 176 5.071384 ACCTATAGGGGTACGGAAAAGATTG 59.929 44.000 22.91 0.00 37.90 2.67
176 177 5.222086 ACCTATAGGGGTACGGAAAAGATT 58.778 41.667 22.91 0.00 37.90 2.40
177 178 4.824276 ACCTATAGGGGTACGGAAAAGAT 58.176 43.478 22.91 0.00 37.90 2.40
178 179 4.270317 ACCTATAGGGGTACGGAAAAGA 57.730 45.455 22.91 0.00 37.90 2.52
187 188 6.359873 TTCTTTGAGGTACCTATAGGGGTA 57.640 41.667 22.91 5.27 40.48 3.69
188 189 4.913154 TCTTTGAGGTACCTATAGGGGT 57.087 45.455 22.91 6.32 42.86 4.95
189 190 6.570654 TTTTCTTTGAGGTACCTATAGGGG 57.429 41.667 22.91 3.68 40.27 4.79
190 191 6.056236 GCTTTTCTTTGAGGTACCTATAGGG 58.944 44.000 22.91 4.78 40.27 3.53
191 192 6.890293 AGCTTTTCTTTGAGGTACCTATAGG 58.110 40.000 16.29 17.73 42.17 2.57
192 193 8.697292 ACTAGCTTTTCTTTGAGGTACCTATAG 58.303 37.037 16.29 12.33 0.00 1.31
193 194 8.605325 ACTAGCTTTTCTTTGAGGTACCTATA 57.395 34.615 16.29 4.07 0.00 1.31
194 195 7.497773 ACTAGCTTTTCTTTGAGGTACCTAT 57.502 36.000 16.29 0.00 0.00 2.57
195 196 6.930068 ACTAGCTTTTCTTTGAGGTACCTA 57.070 37.500 16.29 0.00 0.00 3.08
196 197 5.827326 ACTAGCTTTTCTTTGAGGTACCT 57.173 39.130 16.26 16.26 0.00 3.08
197 198 5.120363 CGAACTAGCTTTTCTTTGAGGTACC 59.880 44.000 2.73 2.73 0.00 3.34
198 199 5.924825 TCGAACTAGCTTTTCTTTGAGGTAC 59.075 40.000 0.00 0.00 0.00 3.34
199 200 6.092955 TCGAACTAGCTTTTCTTTGAGGTA 57.907 37.500 0.00 0.00 0.00 3.08
200 201 4.957296 TCGAACTAGCTTTTCTTTGAGGT 58.043 39.130 0.00 0.00 0.00 3.85
201 202 4.390297 CCTCGAACTAGCTTTTCTTTGAGG 59.610 45.833 9.34 9.34 33.99 3.86
202 203 4.991687 ACCTCGAACTAGCTTTTCTTTGAG 59.008 41.667 0.00 0.00 0.00 3.02
203 204 4.750098 CACCTCGAACTAGCTTTTCTTTGA 59.250 41.667 0.00 0.00 0.00 2.69
204 205 4.083802 CCACCTCGAACTAGCTTTTCTTTG 60.084 45.833 0.00 0.00 0.00 2.77
205 206 4.065789 CCACCTCGAACTAGCTTTTCTTT 58.934 43.478 0.00 0.00 0.00 2.52
206 207 3.665190 CCACCTCGAACTAGCTTTTCTT 58.335 45.455 0.00 0.00 0.00 2.52
207 208 2.613223 GCCACCTCGAACTAGCTTTTCT 60.613 50.000 0.00 0.00 0.00 2.52
208 209 1.732809 GCCACCTCGAACTAGCTTTTC 59.267 52.381 0.00 0.00 0.00 2.29
209 210 1.071699 TGCCACCTCGAACTAGCTTTT 59.928 47.619 0.00 0.00 0.00 2.27
210 211 0.685097 TGCCACCTCGAACTAGCTTT 59.315 50.000 0.00 0.00 0.00 3.51
211 212 0.247736 CTGCCACCTCGAACTAGCTT 59.752 55.000 0.00 0.00 0.00 3.74
212 213 1.893786 CTGCCACCTCGAACTAGCT 59.106 57.895 0.00 0.00 0.00 3.32
213 214 1.811679 GCTGCCACCTCGAACTAGC 60.812 63.158 0.00 0.00 0.00 3.42
214 215 1.517257 CGCTGCCACCTCGAACTAG 60.517 63.158 0.00 0.00 0.00 2.57
215 216 2.571757 CGCTGCCACCTCGAACTA 59.428 61.111 0.00 0.00 0.00 2.24
216 217 4.379243 CCGCTGCCACCTCGAACT 62.379 66.667 0.00 0.00 0.00 3.01
217 218 4.681978 ACCGCTGCCACCTCGAAC 62.682 66.667 0.00 0.00 0.00 3.95
218 219 3.936203 AACCGCTGCCACCTCGAA 61.936 61.111 0.00 0.00 0.00 3.71
219 220 4.680237 CAACCGCTGCCACCTCGA 62.680 66.667 0.00 0.00 0.00 4.04
289 290 0.187606 ACAAGGTTTCCCCAACTCCC 59.812 55.000 0.00 0.00 35.46 4.30
331 994 1.746615 CCCAGAGGTGTCATTGCCG 60.747 63.158 0.00 0.00 0.00 5.69
368 1031 0.743097 GGAACAATGATGCAGCTCCC 59.257 55.000 2.53 0.00 0.00 4.30
384 1047 1.045350 CCATGAGCGGAGGAGAGGAA 61.045 60.000 0.00 0.00 0.00 3.36
418 1081 1.821136 CAGAAGGGGAGCATGGTTTTC 59.179 52.381 0.00 1.95 0.00 2.29
421 1084 1.693640 CCAGAAGGGGAGCATGGTT 59.306 57.895 0.00 0.00 0.00 3.67
422 1085 3.419858 CCAGAAGGGGAGCATGGT 58.580 61.111 0.00 0.00 0.00 3.55
436 1099 1.605710 CGCTGCCATTTTCTATCCCAG 59.394 52.381 0.00 0.00 0.00 4.45
442 1105 5.182487 TGAAGTAATCGCTGCCATTTTCTA 58.818 37.500 0.00 0.00 0.00 2.10
453 1116 5.028549 AGGTCAATGATGAAGTAATCGCT 57.971 39.130 0.00 0.00 37.30 4.93
460 1123 5.045359 TCTCCATGAAGGTCAATGATGAAGT 60.045 40.000 0.00 0.00 37.30 3.01
465 1128 4.849813 TGTCTCCATGAAGGTCAATGAT 57.150 40.909 0.00 0.00 39.02 2.45
466 1129 4.849813 ATGTCTCCATGAAGGTCAATGA 57.150 40.909 0.00 0.00 39.02 2.57
468 1131 4.927049 ACAATGTCTCCATGAAGGTCAAT 58.073 39.130 0.00 0.00 39.02 2.57
492 1155 2.176045 TGGTGATCGAGTTAGCTCCAA 58.824 47.619 0.48 0.00 38.49 3.53
499 1162 3.562182 TCTGGCTATGGTGATCGAGTTA 58.438 45.455 0.00 0.00 0.00 2.24
510 1173 0.107312 ACAAGCTGCTCTGGCTATGG 60.107 55.000 1.00 0.00 39.30 2.74
513 1176 1.527034 CAAACAAGCTGCTCTGGCTA 58.473 50.000 1.00 0.00 39.30 3.93
520 1183 1.066257 CAACGCCAAACAAGCTGCT 59.934 52.632 0.00 0.00 0.00 4.24
522 1185 0.528249 AAGCAACGCCAAACAAGCTG 60.528 50.000 0.00 0.00 31.88 4.24
532 1195 0.040067 CCTCACTTTGAAGCAACGCC 60.040 55.000 0.00 0.00 0.00 5.68
534 1197 2.213499 AGACCTCACTTTGAAGCAACG 58.787 47.619 0.00 0.00 0.00 4.10
543 1206 4.038162 GTCGCTATCCATAGACCTCACTTT 59.962 45.833 0.00 0.00 32.05 2.66
544 1207 3.570550 GTCGCTATCCATAGACCTCACTT 59.429 47.826 0.00 0.00 32.05 3.16
552 1215 2.558795 GCCTCAAGTCGCTATCCATAGA 59.441 50.000 0.00 0.00 32.05 1.98
564 1227 1.134907 CCATGCCATTTGCCTCAAGTC 60.135 52.381 0.00 0.00 40.16 3.01
565 1228 0.899720 CCATGCCATTTGCCTCAAGT 59.100 50.000 0.00 0.00 40.16 3.16
577 1240 2.515290 CGCTGCAGATCCATGCCA 60.515 61.111 20.43 0.00 45.91 4.92
592 1256 2.286418 CCAGAAAAATCACTATCGCCGC 60.286 50.000 0.00 0.00 0.00 6.53
616 1280 1.185618 TTACACAGAGACTGCGGCCT 61.186 55.000 0.00 0.00 34.37 5.19
629 1293 0.244450 CCTAACCGGCGTCTTACACA 59.756 55.000 6.01 0.00 0.00 3.72
645 1309 2.747446 GAGATTTTTGAACTGCGGCCTA 59.253 45.455 0.00 0.00 0.00 3.93
646 1310 1.541588 GAGATTTTTGAACTGCGGCCT 59.458 47.619 0.00 0.00 0.00 5.19
647 1311 1.269448 TGAGATTTTTGAACTGCGGCC 59.731 47.619 0.00 0.00 0.00 6.13
648 1312 2.704725 TGAGATTTTTGAACTGCGGC 57.295 45.000 0.00 0.00 0.00 6.53
649 1313 4.168760 GGAATGAGATTTTTGAACTGCGG 58.831 43.478 0.00 0.00 0.00 5.69
650 1314 4.168760 GGGAATGAGATTTTTGAACTGCG 58.831 43.478 0.00 0.00 0.00 5.18
651 1315 4.498241 GGGGAATGAGATTTTTGAACTGC 58.502 43.478 0.00 0.00 0.00 4.40
652 1316 4.774200 AGGGGGAATGAGATTTTTGAACTG 59.226 41.667 0.00 0.00 0.00 3.16
653 1317 5.015813 AGGGGGAATGAGATTTTTGAACT 57.984 39.130 0.00 0.00 0.00 3.01
654 1318 5.745312 AAGGGGGAATGAGATTTTTGAAC 57.255 39.130 0.00 0.00 0.00 3.18
655 1319 5.012975 CCAAAGGGGGAATGAGATTTTTGAA 59.987 40.000 0.00 0.00 0.00 2.69
656 1320 4.531732 CCAAAGGGGGAATGAGATTTTTGA 59.468 41.667 0.00 0.00 0.00 2.69
657 1321 4.835678 CCAAAGGGGGAATGAGATTTTTG 58.164 43.478 0.00 0.00 0.00 2.44
675 1339 2.835580 TGGACGTTCGATAACCCAAA 57.164 45.000 0.00 0.00 31.46 3.28
685 1349 5.329493 GGGAATAAGATTTTTGGACGTTCG 58.671 41.667 0.00 0.00 0.00 3.95
692 1356 5.744171 CCAAAGGGGGAATAAGATTTTTGG 58.256 41.667 0.00 0.00 37.88 3.28
711 1375 2.250031 TCCAGTCTACGCTAACCCAAA 58.750 47.619 0.00 0.00 0.00 3.28
714 1378 2.418334 CCTTTCCAGTCTACGCTAACCC 60.418 54.545 0.00 0.00 0.00 4.11
721 1385 0.249398 CCACCCCTTTCCAGTCTACG 59.751 60.000 0.00 0.00 0.00 3.51
744 1408 8.169977 AGATTTTATATCTAACGTCGGTGGTA 57.830 34.615 0.00 0.00 0.00 3.25
761 1425 5.527582 GTGCAATCTCCACCGTAGATTTTAT 59.472 40.000 0.00 0.00 36.51 1.40
897 1569 0.179145 CGGTACTCGTGCGGAATCTT 60.179 55.000 0.00 0.00 0.00 2.40
932 1604 4.500826 GACCCCTCCCCTCCCCTC 62.501 77.778 0.00 0.00 0.00 4.30
1203 1877 2.361992 GGGGAACGGGCGGAAAAT 60.362 61.111 0.00 0.00 0.00 1.82
1408 2087 2.281070 ACACACAGAAGCGGCCTG 60.281 61.111 0.00 0.00 37.64 4.85
1412 2091 0.798776 GGAATCACACACAGAAGCGG 59.201 55.000 0.00 0.00 0.00 5.52
1432 2111 2.669364 CAGTTCAGCAAAGCACCATTC 58.331 47.619 0.00 0.00 0.00 2.67
1434 2113 0.316204 GCAGTTCAGCAAAGCACCAT 59.684 50.000 0.00 0.00 0.00 3.55
1450 2130 3.599514 CGAAGCGAAACAAACATTAGCAG 59.400 43.478 0.00 0.00 31.78 4.24
1458 2138 1.396815 CCGAGACGAAGCGAAACAAAC 60.397 52.381 0.00 0.00 0.00 2.93
1479 2159 4.320494 GCCCCATTCAAATTATCTACGCAG 60.320 45.833 0.00 0.00 0.00 5.18
1480 2160 3.568007 GCCCCATTCAAATTATCTACGCA 59.432 43.478 0.00 0.00 0.00 5.24
1491 2176 3.825908 AGAACCTTAGCCCCATTCAAA 57.174 42.857 0.00 0.00 0.00 2.69
1641 2326 3.225104 GGAATATTTGCAGGCATCTCCA 58.775 45.455 0.00 0.00 37.29 3.86
1644 2329 3.317455 TGGGAATATTTGCAGGCATCT 57.683 42.857 0.00 0.00 0.00 2.90
1650 2335 6.151663 TGTTCATCATGGGAATATTTGCAG 57.848 37.500 4.42 0.00 0.00 4.41
1723 2408 3.417069 AGGTTGTGTGTATTGCTAGCA 57.583 42.857 14.93 14.93 0.00 3.49
1729 2414 6.456853 CGATGGTGAATAGGTTGTGTGTATTG 60.457 42.308 0.00 0.00 0.00 1.90
1789 2645 1.691196 CTGTGGGTCTTTTTGCCTCA 58.309 50.000 0.00 0.00 0.00 3.86
1790 2646 0.315251 GCTGTGGGTCTTTTTGCCTC 59.685 55.000 0.00 0.00 0.00 4.70
1801 2657 6.268847 TGTTTTTCTAATAAATGGCTGTGGGT 59.731 34.615 0.00 0.00 0.00 4.51
1871 2727 9.162733 AGATAGCCTAGTTAGTCTAGTTAGTCT 57.837 37.037 0.00 0.00 43.23 3.24
1904 2760 4.694339 ACAGACTCTGTTGTCCTTGTAAC 58.306 43.478 5.82 0.00 42.59 2.50
1928 2784 2.332063 TAGTCCTGCTGCAATTAGGC 57.668 50.000 3.02 0.00 0.00 3.93
1988 2844 1.269723 GCCCTTGCTTTTACACTGGAC 59.730 52.381 0.00 0.00 33.53 4.02
2059 2915 6.586844 AGAACTTCTCTCGTGCAAATTACTAC 59.413 38.462 0.00 0.00 0.00 2.73
2076 2932 6.085555 TGACACTATCGTGAAAGAACTTCT 57.914 37.500 4.10 0.00 43.97 2.85
2150 3006 3.026630 TCACAGACGATTGGAGTGAAC 57.973 47.619 0.00 0.00 36.39 3.18
2162 5486 4.150627 CCACAGACTGTTATTTCACAGACG 59.849 45.833 5.04 1.93 46.29 4.18
2177 5501 6.640518 CAGGTGTACATTATTACCACAGACT 58.359 40.000 0.00 0.00 35.66 3.24
2193 5518 6.985188 TTATCTTGAGAAATGCAGGTGTAC 57.015 37.500 0.00 0.00 0.00 2.90
2225 5550 7.009907 GCCTTACTGTACAAGTATAAGTTTCCG 59.990 40.741 0.00 0.00 41.10 4.30
2359 5684 2.268762 TGGAGCATGTACTTGCAACA 57.731 45.000 29.06 23.88 45.23 3.33
2436 5761 6.528423 TGCGGAAATAACAATAAAATTGTCCG 59.472 34.615 18.22 18.22 37.64 4.79
2465 5790 4.156556 TGTGCATTTGGAGAAGCAGATAAC 59.843 41.667 0.00 0.00 37.72 1.89
3438 7151 2.300956 TTCCAGCCAGGCAACAATAA 57.699 45.000 15.80 0.00 41.41 1.40
3483 9409 6.560253 ACTGAACAACATTACTGATGAACC 57.440 37.500 0.00 0.00 39.15 3.62
3546 9479 8.410912 TGCATTCCTCTGAAAATAGAATTCATG 58.589 33.333 8.44 0.00 36.30 3.07
3547 9480 8.411683 GTGCATTCCTCTGAAAATAGAATTCAT 58.588 33.333 8.44 0.00 36.30 2.57
3554 9488 5.902613 TTGGTGCATTCCTCTGAAAATAG 57.097 39.130 0.00 0.00 33.32 1.73
3573 9507 1.969923 TGGCTCTTTGGTGGATTTTGG 59.030 47.619 0.00 0.00 0.00 3.28
3574 9508 2.364970 TGTGGCTCTTTGGTGGATTTTG 59.635 45.455 0.00 0.00 0.00 2.44
3575 9509 2.676748 TGTGGCTCTTTGGTGGATTTT 58.323 42.857 0.00 0.00 0.00 1.82
3577 9511 2.380064 TTGTGGCTCTTTGGTGGATT 57.620 45.000 0.00 0.00 0.00 3.01
3625 9609 1.158904 TCCCTATCCCCTGATCTCGT 58.841 55.000 0.00 0.00 32.18 4.18
3670 9654 1.683917 CCTAGAATCTCGGTCCCTGTG 59.316 57.143 0.00 0.00 0.00 3.66
3699 9684 2.876091 TCTTTTGTGTCTCTATCGCCG 58.124 47.619 0.00 0.00 0.00 6.46
3765 9750 1.683707 ATCGCCTCTCTGCCTGTCA 60.684 57.895 0.00 0.00 0.00 3.58
3837 9822 3.999603 TGATCTCTCAGGGGATTTCTCA 58.000 45.455 0.00 0.00 0.00 3.27
3915 9999 1.303074 TCTGTCGTGCCTAGACCGT 60.303 57.895 0.00 0.00 37.80 4.83
3936 10020 2.742710 TTTCGTGACGGCGACCAGAG 62.743 60.000 16.62 8.31 40.85 3.35
3943 10027 2.380410 CCCTTCTTTCGTGACGGCG 61.380 63.158 4.80 4.80 0.00 6.46
3949 10033 0.032952 TCGTCACCCCTTCTTTCGTG 59.967 55.000 0.00 0.00 0.00 4.35
3985 10071 4.868171 TGAGTTTTATCTCCGTGATTTCCG 59.132 41.667 0.00 0.00 36.65 4.30
4039 10141 5.660629 TGTACAAGTACAAACATCAACCG 57.339 39.130 10.42 0.00 42.49 4.44
4082 10185 6.295011 CCCTGAATATCTAGCACAGACTAAGG 60.295 46.154 0.00 0.00 35.62 2.69
4086 10189 4.343526 CACCCTGAATATCTAGCACAGACT 59.656 45.833 0.00 0.00 35.62 3.24
4088 10191 4.342378 GTCACCCTGAATATCTAGCACAGA 59.658 45.833 0.00 0.00 37.79 3.41
4089 10192 4.100035 TGTCACCCTGAATATCTAGCACAG 59.900 45.833 0.00 0.00 0.00 3.66
4093 10196 5.477510 CAGATGTCACCCTGAATATCTAGC 58.522 45.833 0.00 0.00 33.53 3.42
4094 10197 5.245751 AGCAGATGTCACCCTGAATATCTAG 59.754 44.000 7.94 0.00 33.53 2.43
4095 10198 5.150715 AGCAGATGTCACCCTGAATATCTA 58.849 41.667 7.94 0.00 33.53 1.98
4096 10199 3.972638 AGCAGATGTCACCCTGAATATCT 59.027 43.478 7.94 0.00 34.75 1.98
4098 10201 4.080129 ACAAGCAGATGTCACCCTGAATAT 60.080 41.667 7.94 0.00 32.37 1.28
4101 10204 1.421268 ACAAGCAGATGTCACCCTGAA 59.579 47.619 7.94 0.00 32.37 3.02
4102 10205 1.059098 ACAAGCAGATGTCACCCTGA 58.941 50.000 7.94 0.00 32.37 3.86
4103 10206 1.808945 GAACAAGCAGATGTCACCCTG 59.191 52.381 0.00 0.00 31.81 4.45
4104 10207 1.701847 AGAACAAGCAGATGTCACCCT 59.298 47.619 0.00 0.00 31.81 4.34
4105 10208 2.191128 AGAACAAGCAGATGTCACCC 57.809 50.000 0.00 0.00 31.81 4.61
4110 10216 5.827797 TGTAAGGAAAAGAACAAGCAGATGT 59.172 36.000 0.00 0.00 34.24 3.06
4111 10217 6.317789 TGTAAGGAAAAGAACAAGCAGATG 57.682 37.500 0.00 0.00 0.00 2.90
4113 10219 6.377146 ACTTTGTAAGGAAAAGAACAAGCAGA 59.623 34.615 3.09 0.00 37.91 4.26
4132 10239 8.068892 TGGGTTAGTATGTTCAAAAACTTTGT 57.931 30.769 0.00 0.00 36.30 2.83
4161 10269 7.930217 TGAGTTAATATAGCCTGCAAAATCAC 58.070 34.615 0.00 0.00 0.00 3.06
4191 10299 6.716628 AGAACATTACTGTGTGAACCAATCAT 59.283 34.615 0.00 0.00 35.86 2.45
4192 10300 6.061441 AGAACATTACTGTGTGAACCAATCA 58.939 36.000 0.00 0.00 35.22 2.57
4193 10301 6.560253 AGAACATTACTGTGTGAACCAATC 57.440 37.500 0.00 0.00 35.22 2.67
4222 10335 6.040247 CGCCAGATAGTTGTTACTATGACAA 58.960 40.000 2.74 0.00 45.43 3.18
4224 10337 5.828747 TCGCCAGATAGTTGTTACTATGAC 58.171 41.667 2.74 0.00 45.43 3.06
4225 10338 6.459670 TTCGCCAGATAGTTGTTACTATGA 57.540 37.500 2.74 0.00 45.43 2.15
4226 10339 7.715265 AATTCGCCAGATAGTTGTTACTATG 57.285 36.000 2.74 0.00 45.43 2.23
4228 10341 7.604927 ACAAAATTCGCCAGATAGTTGTTACTA 59.395 33.333 0.00 0.00 40.96 1.82
4229 10342 6.430000 ACAAAATTCGCCAGATAGTTGTTACT 59.570 34.615 0.00 0.00 38.44 2.24
4230 10343 6.608610 ACAAAATTCGCCAGATAGTTGTTAC 58.391 36.000 0.00 0.00 0.00 2.50
4236 10462 8.612619 CAAGTATTACAAAATTCGCCAGATAGT 58.387 33.333 0.00 0.00 0.00 2.12
4237 10463 8.612619 ACAAGTATTACAAAATTCGCCAGATAG 58.387 33.333 0.00 0.00 0.00 2.08
4273 10499 9.059260 GTCAGTTTTCTGGTAATTTTACAGGTA 57.941 33.333 3.12 0.00 46.94 3.08
4274 10500 7.558444 TGTCAGTTTTCTGGTAATTTTACAGGT 59.442 33.333 3.12 0.00 46.94 4.00
4276 10502 7.860872 GGTGTCAGTTTTCTGGTAATTTTACAG 59.139 37.037 3.12 0.00 46.94 2.74
4277 10503 7.339721 TGGTGTCAGTTTTCTGGTAATTTTACA 59.660 33.333 3.12 0.00 46.94 2.41
4278 10504 7.708998 TGGTGTCAGTTTTCTGGTAATTTTAC 58.291 34.615 0.00 0.00 46.94 2.01
4280 10506 6.783708 TGGTGTCAGTTTTCTGGTAATTTT 57.216 33.333 0.00 0.00 46.94 1.82
4283 10538 5.630121 TGATGGTGTCAGTTTTCTGGTAAT 58.370 37.500 0.00 0.00 46.94 1.89
4302 10557 6.204882 TCAAGCATGATATCTTTGCTCTGATG 59.795 38.462 24.56 20.17 45.54 3.07
4305 10560 6.183360 TGTTCAAGCATGATATCTTTGCTCTG 60.183 38.462 24.56 22.44 45.54 3.35
4313 10568 7.876936 ACAGAATTGTTCAAGCATGATATCT 57.123 32.000 3.98 0.00 34.96 1.98
4316 10571 9.624697 GTTTAACAGAATTGTTCAAGCATGATA 57.375 29.630 0.00 0.00 44.00 2.15
4360 10838 7.794041 TGCTTTTCTGCCATTCCATTATATTT 58.206 30.769 0.00 0.00 0.00 1.40
4361 10839 7.364149 TGCTTTTCTGCCATTCCATTATATT 57.636 32.000 0.00 0.00 0.00 1.28
4364 10842 5.188359 ACTTGCTTTTCTGCCATTCCATTAT 59.812 36.000 0.00 0.00 0.00 1.28
4370 10870 3.311966 GACACTTGCTTTTCTGCCATTC 58.688 45.455 0.00 0.00 0.00 2.67
4437 10938 3.603158 TGCTGCTCCGAATAAACAGTA 57.397 42.857 0.00 0.00 0.00 2.74
4451 10952 1.458639 GCTGTGGGTTCTTTGCTGCT 61.459 55.000 0.00 0.00 0.00 4.24
4512 11019 3.011949 TGTTTGCTTTCATTTCTCCGC 57.988 42.857 0.00 0.00 0.00 5.54
4513 11020 3.365820 GCATGTTTGCTTTCATTTCTCCG 59.634 43.478 0.00 0.00 45.77 4.63
4514 11021 4.916099 GCATGTTTGCTTTCATTTCTCC 57.084 40.909 0.00 0.00 45.77 3.71
4542 11049 0.035439 GTTCCTGGATTTCTCCGGCA 60.035 55.000 0.00 0.00 45.41 5.69
4573 11088 1.589993 CGCTCGTGCCATCGATCTT 60.590 57.895 3.52 0.00 39.12 2.40
4708 11223 1.270839 ACCATGTACTCATATGCCGCC 60.271 52.381 0.00 0.00 32.47 6.13
4792 11307 2.461300 TCGGTCAGATCTCCTTCCAT 57.539 50.000 0.00 0.00 0.00 3.41
4793 11308 2.103373 CTTCGGTCAGATCTCCTTCCA 58.897 52.381 0.00 0.00 0.00 3.53
4828 11343 2.809601 GAAGTGACGATGCGCGGT 60.810 61.111 8.83 0.00 46.49 5.68
4905 11424 1.471684 CCTGAATTCACTGAGCAAGCC 59.528 52.381 3.38 0.00 0.00 4.35
4939 11458 6.515043 AAGCTGTTGTTGAAATTCAATTCG 57.485 33.333 11.87 1.32 38.79 3.34
4941 11460 9.252962 CTAGAAAGCTGTTGTTGAAATTCAATT 57.747 29.630 11.87 0.00 38.79 2.32
4951 11470 6.228273 TCGAATTCTAGAAAGCTGTTGTTG 57.772 37.500 9.71 0.00 0.00 3.33
4970 11489 9.773328 GTGTCAAATCAATCATATTTCTTCGAA 57.227 29.630 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.