Multiple sequence alignment - TraesCS5A01G487900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G487900 chr5A 100.000 4511 0 0 1 4511 657774324 657778834 0.000000e+00 8331
1 TraesCS5A01G487900 chr5D 91.448 3660 162 69 954 4511 530051247 530054857 0.000000e+00 4885
2 TraesCS5A01G487900 chr5D 87.956 548 42 14 393 929 530050358 530050892 3.830000e-175 625
3 TraesCS5A01G487900 chr5D 90.741 108 8 2 1678 1784 526911676 526911570 4.700000e-30 143
4 TraesCS5A01G487900 chr5B 87.578 1602 91 41 2987 4511 669231325 669232895 0.000000e+00 1757
5 TraesCS5A01G487900 chr5B 85.890 1382 107 52 936 2260 669229210 669230560 0.000000e+00 1391
6 TraesCS5A01G487900 chr5B 88.730 488 25 10 392 868 669228522 669228990 1.820000e-158 569
7 TraesCS5A01G487900 chr5B 92.734 289 20 1 2315 2602 669230739 669231027 2.510000e-112 416
8 TraesCS5A01G487900 chr1A 93.207 368 25 0 2 369 376511163 376510796 3.970000e-150 542
9 TraesCS5A01G487900 chr4D 92.954 369 26 0 1 369 483619457 483619825 5.130000e-149 538
10 TraesCS5A01G487900 chr4B 92.412 369 28 0 1 369 105549550 105549182 1.110000e-145 527
11 TraesCS5A01G487900 chr2D 92.412 369 28 0 1 369 546411878 546411510 1.110000e-145 527
12 TraesCS5A01G487900 chr3A 92.371 367 28 0 1 367 703807166 703807532 1.440000e-144 523
13 TraesCS5A01G487900 chr3A 91.328 369 32 0 1 369 100863967 100864335 5.210000e-139 505
14 TraesCS5A01G487900 chr4A 91.870 369 30 0 1 369 687427982 687427614 2.410000e-142 516
15 TraesCS5A01G487900 chr2B 91.870 369 30 0 1 369 669239356 669239724 2.410000e-142 516
16 TraesCS5A01G487900 chr1B 91.870 369 30 0 1 369 651902765 651902397 2.410000e-142 516


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G487900 chr5A 657774324 657778834 4510 False 8331.00 8331 100.000 1 4511 1 chr5A.!!$F1 4510
1 TraesCS5A01G487900 chr5D 530050358 530054857 4499 False 2755.00 4885 89.702 393 4511 2 chr5D.!!$F1 4118
2 TraesCS5A01G487900 chr5B 669228522 669232895 4373 False 1033.25 1757 88.733 392 4511 4 chr5B.!!$F1 4119

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 343 0.035343 GGTTTCCTAGAGCACACCCC 60.035 60.000 0.0 0.0 0.00 4.95 F
1216 1715 0.096976 CGCCTCCAACAAGTAATGCG 59.903 55.000 0.0 0.0 34.52 4.73 F
2295 2875 0.094730 GGACGCACACATAAAGACGC 59.905 55.000 0.0 0.0 0.00 5.19 F
3411 4172 1.077212 CATGCTGCCTTGCTACCCT 60.077 57.895 0.0 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2281 2861 0.035439 AGGGGGCGTCTTTATGTGTG 60.035 55.000 0.00 0.00 0.00 3.82 R
2852 3581 0.247736 GGGACACAGTACTGGAGCAG 59.752 60.000 26.12 12.63 37.52 4.24 R
3413 4174 0.397564 TGCATCAGAGGTTGCACTCA 59.602 50.000 7.05 0.00 43.01 3.41 R
4424 5234 3.432046 CCAAGAAGGAGAAGAGCATCCTC 60.432 52.174 0.00 0.00 45.39 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.785868 AATCCTTCTCACATGCGGC 58.214 52.632 0.00 0.00 0.00 6.53
19 20 1.091771 AATCCTTCTCACATGCGGCG 61.092 55.000 0.51 0.51 0.00 6.46
20 21 3.869272 CCTTCTCACATGCGGCGC 61.869 66.667 27.44 27.44 0.00 6.53
21 22 3.869272 CTTCTCACATGCGGCGCC 61.869 66.667 30.82 19.07 0.00 6.53
22 23 4.695993 TTCTCACATGCGGCGCCA 62.696 61.111 30.82 17.85 0.00 5.69
23 24 4.695993 TCTCACATGCGGCGCCAA 62.696 61.111 30.82 15.06 0.00 4.52
24 25 3.736100 CTCACATGCGGCGCCAAA 61.736 61.111 30.82 14.63 0.00 3.28
25 26 3.951655 CTCACATGCGGCGCCAAAC 62.952 63.158 30.82 15.92 0.00 2.93
28 29 4.132441 CATGCGGCGCCAAACCAT 62.132 61.111 30.82 18.91 0.00 3.55
29 30 4.132441 ATGCGGCGCCAAACCATG 62.132 61.111 30.82 9.29 0.00 3.66
34 35 4.740431 GCGCCAAACCATGCCCAC 62.740 66.667 0.00 0.00 0.00 4.61
35 36 4.067913 CGCCAAACCATGCCCACC 62.068 66.667 0.00 0.00 0.00 4.61
36 37 2.604382 GCCAAACCATGCCCACCT 60.604 61.111 0.00 0.00 0.00 4.00
37 38 2.649129 GCCAAACCATGCCCACCTC 61.649 63.158 0.00 0.00 0.00 3.85
38 39 1.228831 CCAAACCATGCCCACCTCA 60.229 57.895 0.00 0.00 0.00 3.86
39 40 1.535204 CCAAACCATGCCCACCTCAC 61.535 60.000 0.00 0.00 0.00 3.51
40 41 0.827089 CAAACCATGCCCACCTCACA 60.827 55.000 0.00 0.00 0.00 3.58
41 42 0.105760 AAACCATGCCCACCTCACAA 60.106 50.000 0.00 0.00 0.00 3.33
42 43 0.540365 AACCATGCCCACCTCACAAG 60.540 55.000 0.00 0.00 0.00 3.16
43 44 1.379916 CCATGCCCACCTCACAAGA 59.620 57.895 0.00 0.00 0.00 3.02
44 45 0.962356 CCATGCCCACCTCACAAGAC 60.962 60.000 0.00 0.00 0.00 3.01
45 46 0.250858 CATGCCCACCTCACAAGACA 60.251 55.000 0.00 0.00 0.00 3.41
46 47 0.700564 ATGCCCACCTCACAAGACAT 59.299 50.000 0.00 0.00 0.00 3.06
47 48 0.036732 TGCCCACCTCACAAGACATC 59.963 55.000 0.00 0.00 0.00 3.06
48 49 0.036732 GCCCACCTCACAAGACATCA 59.963 55.000 0.00 0.00 0.00 3.07
49 50 1.813513 CCCACCTCACAAGACATCAC 58.186 55.000 0.00 0.00 0.00 3.06
50 51 1.432514 CCACCTCACAAGACATCACG 58.567 55.000 0.00 0.00 0.00 4.35
51 52 1.000843 CCACCTCACAAGACATCACGA 59.999 52.381 0.00 0.00 0.00 4.35
52 53 2.332104 CACCTCACAAGACATCACGAG 58.668 52.381 0.00 0.00 0.00 4.18
53 54 1.964223 ACCTCACAAGACATCACGAGT 59.036 47.619 0.00 0.00 0.00 4.18
54 55 2.029828 ACCTCACAAGACATCACGAGTC 60.030 50.000 0.00 0.00 36.26 3.36
55 56 2.029918 CCTCACAAGACATCACGAGTCA 60.030 50.000 0.00 0.00 38.46 3.41
56 57 2.983136 CTCACAAGACATCACGAGTCAC 59.017 50.000 0.00 0.00 38.46 3.67
57 58 2.061773 CACAAGACATCACGAGTCACC 58.938 52.381 0.00 0.00 38.46 4.02
58 59 1.000955 ACAAGACATCACGAGTCACCC 59.999 52.381 0.00 0.00 38.46 4.61
59 60 1.273606 CAAGACATCACGAGTCACCCT 59.726 52.381 0.00 0.00 38.46 4.34
60 61 1.178276 AGACATCACGAGTCACCCTC 58.822 55.000 0.00 0.00 38.46 4.30
61 62 0.888619 GACATCACGAGTCACCCTCA 59.111 55.000 0.00 0.00 40.48 3.86
62 63 0.603569 ACATCACGAGTCACCCTCAC 59.396 55.000 0.00 0.00 40.48 3.51
63 64 0.456824 CATCACGAGTCACCCTCACG 60.457 60.000 0.00 0.00 40.48 4.35
64 65 0.608308 ATCACGAGTCACCCTCACGA 60.608 55.000 0.00 0.00 40.48 4.35
65 66 0.608308 TCACGAGTCACCCTCACGAT 60.608 55.000 0.00 0.00 40.48 3.73
66 67 1.092348 CACGAGTCACCCTCACGATA 58.908 55.000 0.00 0.00 40.48 2.92
67 68 1.676529 CACGAGTCACCCTCACGATAT 59.323 52.381 0.00 0.00 40.48 1.63
68 69 1.676529 ACGAGTCACCCTCACGATATG 59.323 52.381 0.00 0.00 40.48 1.78
69 70 1.676529 CGAGTCACCCTCACGATATGT 59.323 52.381 0.00 0.00 40.48 2.29
70 71 2.287069 CGAGTCACCCTCACGATATGTC 60.287 54.545 0.00 0.00 40.48 3.06
71 72 2.952978 GAGTCACCCTCACGATATGTCT 59.047 50.000 0.00 0.00 40.17 3.41
72 73 4.135306 GAGTCACCCTCACGATATGTCTA 58.865 47.826 0.00 0.00 40.17 2.59
73 74 4.138290 AGTCACCCTCACGATATGTCTAG 58.862 47.826 0.00 0.00 0.00 2.43
74 75 4.135306 GTCACCCTCACGATATGTCTAGA 58.865 47.826 0.00 0.00 0.00 2.43
75 76 4.023878 GTCACCCTCACGATATGTCTAGAC 60.024 50.000 16.32 16.32 0.00 2.59
76 77 3.883489 CACCCTCACGATATGTCTAGACA 59.117 47.826 27.07 27.07 46.44 3.41
77 78 3.884091 ACCCTCACGATATGTCTAGACAC 59.116 47.826 27.41 14.10 45.05 3.67
78 79 3.253677 CCCTCACGATATGTCTAGACACC 59.746 52.174 27.41 17.40 45.05 4.16
79 80 4.138290 CCTCACGATATGTCTAGACACCT 58.862 47.826 27.41 17.16 45.05 4.00
80 81 4.023622 CCTCACGATATGTCTAGACACCTG 60.024 50.000 27.41 18.53 45.05 4.00
81 82 4.777463 TCACGATATGTCTAGACACCTGA 58.223 43.478 27.41 18.30 45.05 3.86
82 83 5.377478 TCACGATATGTCTAGACACCTGAT 58.623 41.667 27.41 17.28 45.05 2.90
83 84 5.239525 TCACGATATGTCTAGACACCTGATG 59.760 44.000 27.41 20.89 45.05 3.07
84 85 5.239525 CACGATATGTCTAGACACCTGATGA 59.760 44.000 27.41 2.56 45.05 2.92
85 86 5.828328 ACGATATGTCTAGACACCTGATGAA 59.172 40.000 27.41 1.78 45.05 2.57
86 87 6.016693 ACGATATGTCTAGACACCTGATGAAG 60.017 42.308 27.41 13.55 45.05 3.02
87 88 3.876274 TGTCTAGACACCTGATGAAGC 57.124 47.619 21.74 0.00 36.21 3.86
88 89 3.165071 TGTCTAGACACCTGATGAAGCA 58.835 45.455 21.74 0.00 36.21 3.91
89 90 3.771479 TGTCTAGACACCTGATGAAGCAT 59.229 43.478 21.74 0.00 36.21 3.79
90 91 4.118410 GTCTAGACACCTGATGAAGCATG 58.882 47.826 18.20 0.00 0.00 4.06
91 92 3.771479 TCTAGACACCTGATGAAGCATGT 59.229 43.478 0.00 0.00 0.00 3.21
92 93 3.430042 AGACACCTGATGAAGCATGTT 57.570 42.857 0.00 0.00 0.00 2.71
93 94 3.759581 AGACACCTGATGAAGCATGTTT 58.240 40.909 0.00 0.00 0.00 2.83
94 95 4.147321 AGACACCTGATGAAGCATGTTTT 58.853 39.130 0.00 0.00 0.00 2.43
95 96 5.316167 AGACACCTGATGAAGCATGTTTTA 58.684 37.500 0.00 0.00 0.00 1.52
96 97 5.948162 AGACACCTGATGAAGCATGTTTTAT 59.052 36.000 0.00 0.00 0.00 1.40
97 98 7.112122 AGACACCTGATGAAGCATGTTTTATA 58.888 34.615 0.00 0.00 0.00 0.98
98 99 7.066284 AGACACCTGATGAAGCATGTTTTATAC 59.934 37.037 0.00 0.00 0.00 1.47
99 100 6.095440 ACACCTGATGAAGCATGTTTTATACC 59.905 38.462 0.00 0.00 0.00 2.73
100 101 5.594317 ACCTGATGAAGCATGTTTTATACCC 59.406 40.000 0.00 0.00 0.00 3.69
101 102 5.010012 CCTGATGAAGCATGTTTTATACCCC 59.990 44.000 0.00 0.00 0.00 4.95
102 103 5.765510 TGATGAAGCATGTTTTATACCCCT 58.234 37.500 0.00 0.00 0.00 4.79
103 104 5.827797 TGATGAAGCATGTTTTATACCCCTC 59.172 40.000 0.00 0.00 0.00 4.30
104 105 5.450818 TGAAGCATGTTTTATACCCCTCT 57.549 39.130 0.00 0.00 0.00 3.69
105 106 5.826643 TGAAGCATGTTTTATACCCCTCTT 58.173 37.500 0.00 0.00 0.00 2.85
106 107 6.252995 TGAAGCATGTTTTATACCCCTCTTT 58.747 36.000 0.00 0.00 0.00 2.52
107 108 6.723977 TGAAGCATGTTTTATACCCCTCTTTT 59.276 34.615 0.00 0.00 0.00 2.27
108 109 6.775594 AGCATGTTTTATACCCCTCTTTTC 57.224 37.500 0.00 0.00 0.00 2.29
109 110 6.494059 AGCATGTTTTATACCCCTCTTTTCT 58.506 36.000 0.00 0.00 0.00 2.52
110 111 6.378280 AGCATGTTTTATACCCCTCTTTTCTG 59.622 38.462 0.00 0.00 0.00 3.02
111 112 6.564328 CATGTTTTATACCCCTCTTTTCTGC 58.436 40.000 0.00 0.00 0.00 4.26
112 113 5.636123 TGTTTTATACCCCTCTTTTCTGCA 58.364 37.500 0.00 0.00 0.00 4.41
113 114 5.710099 TGTTTTATACCCCTCTTTTCTGCAG 59.290 40.000 7.63 7.63 0.00 4.41
114 115 5.772393 TTTATACCCCTCTTTTCTGCAGA 57.228 39.130 13.74 13.74 0.00 4.26
115 116 5.975988 TTATACCCCTCTTTTCTGCAGAT 57.024 39.130 19.04 1.10 0.00 2.90
116 117 4.870021 ATACCCCTCTTTTCTGCAGATT 57.130 40.909 19.04 0.00 0.00 2.40
117 118 3.532641 ACCCCTCTTTTCTGCAGATTT 57.467 42.857 19.04 0.00 0.00 2.17
118 119 3.849527 ACCCCTCTTTTCTGCAGATTTT 58.150 40.909 19.04 0.00 0.00 1.82
119 120 4.226384 ACCCCTCTTTTCTGCAGATTTTT 58.774 39.130 19.04 0.00 0.00 1.94
120 121 4.281941 ACCCCTCTTTTCTGCAGATTTTTC 59.718 41.667 19.04 0.00 0.00 2.29
121 122 4.322273 CCCCTCTTTTCTGCAGATTTTTCC 60.322 45.833 19.04 0.00 0.00 3.13
122 123 4.281688 CCCTCTTTTCTGCAGATTTTTCCA 59.718 41.667 19.04 0.00 0.00 3.53
123 124 5.221501 CCCTCTTTTCTGCAGATTTTTCCAA 60.222 40.000 19.04 3.72 0.00 3.53
124 125 5.924825 CCTCTTTTCTGCAGATTTTTCCAAG 59.075 40.000 19.04 10.78 0.00 3.61
125 126 6.239120 CCTCTTTTCTGCAGATTTTTCCAAGA 60.239 38.462 19.04 13.96 0.00 3.02
126 127 6.742109 TCTTTTCTGCAGATTTTTCCAAGAG 58.258 36.000 19.04 4.64 0.00 2.85
127 128 6.322201 TCTTTTCTGCAGATTTTTCCAAGAGT 59.678 34.615 19.04 0.00 0.00 3.24
128 129 5.695851 TTCTGCAGATTTTTCCAAGAGTC 57.304 39.130 19.04 0.00 0.00 3.36
129 130 3.748048 TCTGCAGATTTTTCCAAGAGTCG 59.252 43.478 13.74 0.00 0.00 4.18
130 131 3.738982 TGCAGATTTTTCCAAGAGTCGA 58.261 40.909 0.00 0.00 0.00 4.20
131 132 3.748048 TGCAGATTTTTCCAAGAGTCGAG 59.252 43.478 0.00 0.00 0.00 4.04
132 133 3.748568 GCAGATTTTTCCAAGAGTCGAGT 59.251 43.478 0.00 0.00 0.00 4.18
133 134 4.929808 GCAGATTTTTCCAAGAGTCGAGTA 59.070 41.667 0.00 0.00 0.00 2.59
134 135 5.062809 GCAGATTTTTCCAAGAGTCGAGTAG 59.937 44.000 0.00 0.00 0.00 2.57
135 136 5.578727 CAGATTTTTCCAAGAGTCGAGTAGG 59.421 44.000 0.00 0.00 0.00 3.18
136 137 3.955650 TTTTCCAAGAGTCGAGTAGGG 57.044 47.619 0.00 0.00 0.00 3.53
137 138 2.893215 TTCCAAGAGTCGAGTAGGGA 57.107 50.000 0.00 0.00 0.00 4.20
138 139 2.893215 TCCAAGAGTCGAGTAGGGAA 57.107 50.000 0.00 0.00 0.00 3.97
139 140 2.444421 TCCAAGAGTCGAGTAGGGAAC 58.556 52.381 0.00 0.00 0.00 3.62
140 141 2.168496 CCAAGAGTCGAGTAGGGAACA 58.832 52.381 0.00 0.00 0.00 3.18
141 142 2.561419 CCAAGAGTCGAGTAGGGAACAA 59.439 50.000 0.00 0.00 0.00 2.83
142 143 3.006537 CCAAGAGTCGAGTAGGGAACAAA 59.993 47.826 0.00 0.00 0.00 2.83
143 144 3.938289 AGAGTCGAGTAGGGAACAAAC 57.062 47.619 0.00 0.00 0.00 2.93
144 145 3.228453 AGAGTCGAGTAGGGAACAAACA 58.772 45.455 0.00 0.00 0.00 2.83
145 146 3.640029 AGAGTCGAGTAGGGAACAAACAA 59.360 43.478 0.00 0.00 0.00 2.83
146 147 3.988517 GAGTCGAGTAGGGAACAAACAAG 59.011 47.826 0.00 0.00 0.00 3.16
147 148 3.640029 AGTCGAGTAGGGAACAAACAAGA 59.360 43.478 0.00 0.00 0.00 3.02
148 149 4.100498 AGTCGAGTAGGGAACAAACAAGAA 59.900 41.667 0.00 0.00 0.00 2.52
149 150 4.812626 GTCGAGTAGGGAACAAACAAGAAA 59.187 41.667 0.00 0.00 0.00 2.52
150 151 5.050295 GTCGAGTAGGGAACAAACAAGAAAG 60.050 44.000 0.00 0.00 0.00 2.62
151 152 5.054477 CGAGTAGGGAACAAACAAGAAAGA 58.946 41.667 0.00 0.00 0.00 2.52
152 153 5.701290 CGAGTAGGGAACAAACAAGAAAGAT 59.299 40.000 0.00 0.00 0.00 2.40
153 154 6.872020 CGAGTAGGGAACAAACAAGAAAGATA 59.128 38.462 0.00 0.00 0.00 1.98
154 155 7.386848 CGAGTAGGGAACAAACAAGAAAGATAA 59.613 37.037 0.00 0.00 0.00 1.75
155 156 9.232473 GAGTAGGGAACAAACAAGAAAGATAAT 57.768 33.333 0.00 0.00 0.00 1.28
156 157 9.014297 AGTAGGGAACAAACAAGAAAGATAATG 57.986 33.333 0.00 0.00 0.00 1.90
157 158 6.691508 AGGGAACAAACAAGAAAGATAATGC 58.308 36.000 0.00 0.00 0.00 3.56
158 159 5.869344 GGGAACAAACAAGAAAGATAATGCC 59.131 40.000 0.00 0.00 0.00 4.40
159 160 6.454795 GGAACAAACAAGAAAGATAATGCCA 58.545 36.000 0.00 0.00 0.00 4.92
160 161 6.587608 GGAACAAACAAGAAAGATAATGCCAG 59.412 38.462 0.00 0.00 0.00 4.85
161 162 6.655078 ACAAACAAGAAAGATAATGCCAGT 57.345 33.333 0.00 0.00 0.00 4.00
162 163 7.759489 ACAAACAAGAAAGATAATGCCAGTA 57.241 32.000 0.00 0.00 0.00 2.74
163 164 8.177119 ACAAACAAGAAAGATAATGCCAGTAA 57.823 30.769 0.00 0.00 0.00 2.24
164 165 8.299570 ACAAACAAGAAAGATAATGCCAGTAAG 58.700 33.333 0.00 0.00 0.00 2.34
165 166 8.514594 CAAACAAGAAAGATAATGCCAGTAAGA 58.485 33.333 0.00 0.00 0.00 2.10
166 167 8.814038 AACAAGAAAGATAATGCCAGTAAGAT 57.186 30.769 0.00 0.00 0.00 2.40
167 168 9.905713 AACAAGAAAGATAATGCCAGTAAGATA 57.094 29.630 0.00 0.00 0.00 1.98
174 175 8.017418 AGATAATGCCAGTAAGATATCTAGGC 57.983 38.462 22.02 22.02 40.93 3.93
179 180 6.936279 TGCCAGTAAGATATCTAGGCATAAC 58.064 40.000 25.19 9.95 44.89 1.89
180 181 6.496911 TGCCAGTAAGATATCTAGGCATAACA 59.503 38.462 25.19 11.46 44.89 2.41
181 182 6.814146 GCCAGTAAGATATCTAGGCATAACAC 59.186 42.308 23.07 6.80 40.29 3.32
182 183 7.310113 GCCAGTAAGATATCTAGGCATAACACT 60.310 40.741 23.07 8.35 40.29 3.55
183 184 8.589338 CCAGTAAGATATCTAGGCATAACACTT 58.411 37.037 5.46 0.00 0.00 3.16
184 185 9.988815 CAGTAAGATATCTAGGCATAACACTTT 57.011 33.333 5.46 0.00 0.00 2.66
185 186 9.988815 AGTAAGATATCTAGGCATAACACTTTG 57.011 33.333 5.46 0.00 0.00 2.77
186 187 9.982651 GTAAGATATCTAGGCATAACACTTTGA 57.017 33.333 5.46 0.00 0.00 2.69
188 189 9.905713 AAGATATCTAGGCATAACACTTTGAAA 57.094 29.630 5.46 0.00 0.00 2.69
189 190 9.905713 AGATATCTAGGCATAACACTTTGAAAA 57.094 29.630 2.53 0.00 0.00 2.29
190 191 9.937175 GATATCTAGGCATAACACTTTGAAAAC 57.063 33.333 0.00 0.00 0.00 2.43
191 192 7.759489 ATCTAGGCATAACACTTTGAAAACA 57.241 32.000 0.00 0.00 0.00 2.83
192 193 7.202016 TCTAGGCATAACACTTTGAAAACAG 57.798 36.000 0.00 0.00 0.00 3.16
193 194 5.200368 AGGCATAACACTTTGAAAACAGG 57.800 39.130 0.00 0.00 0.00 4.00
194 195 4.892934 AGGCATAACACTTTGAAAACAGGA 59.107 37.500 0.00 0.00 0.00 3.86
195 196 5.539955 AGGCATAACACTTTGAAAACAGGAT 59.460 36.000 0.00 0.00 0.00 3.24
196 197 6.041979 AGGCATAACACTTTGAAAACAGGATT 59.958 34.615 0.00 0.00 0.00 3.01
197 198 6.705825 GGCATAACACTTTGAAAACAGGATTT 59.294 34.615 0.00 0.00 0.00 2.17
198 199 7.307337 GGCATAACACTTTGAAAACAGGATTTG 60.307 37.037 0.00 0.00 0.00 2.32
199 200 7.224557 GCATAACACTTTGAAAACAGGATTTGT 59.775 33.333 0.00 0.00 43.45 2.83
217 218 8.310406 GGATTTGTTCCTTGTTTTCCATTTAG 57.690 34.615 0.00 0.00 41.78 1.85
218 219 8.147704 GGATTTGTTCCTTGTTTTCCATTTAGA 58.852 33.333 0.00 0.00 41.78 2.10
219 220 8.887036 ATTTGTTCCTTGTTTTCCATTTAGAC 57.113 30.769 0.00 0.00 0.00 2.59
220 221 6.399639 TGTTCCTTGTTTTCCATTTAGACC 57.600 37.500 0.00 0.00 0.00 3.85
221 222 5.894393 TGTTCCTTGTTTTCCATTTAGACCA 59.106 36.000 0.00 0.00 0.00 4.02
222 223 6.183360 TGTTCCTTGTTTTCCATTTAGACCAC 60.183 38.462 0.00 0.00 0.00 4.16
223 224 5.450453 TCCTTGTTTTCCATTTAGACCACA 58.550 37.500 0.00 0.00 0.00 4.17
224 225 5.894393 TCCTTGTTTTCCATTTAGACCACAA 59.106 36.000 0.00 0.00 0.00 3.33
225 226 6.040391 TCCTTGTTTTCCATTTAGACCACAAG 59.960 38.462 0.00 0.00 36.58 3.16
226 227 6.040391 CCTTGTTTTCCATTTAGACCACAAGA 59.960 38.462 9.70 0.00 37.82 3.02
227 228 6.633500 TGTTTTCCATTTAGACCACAAGAG 57.367 37.500 0.00 0.00 0.00 2.85
228 229 6.361433 TGTTTTCCATTTAGACCACAAGAGA 58.639 36.000 0.00 0.00 0.00 3.10
229 230 6.486657 TGTTTTCCATTTAGACCACAAGAGAG 59.513 38.462 0.00 0.00 0.00 3.20
230 231 4.207891 TCCATTTAGACCACAAGAGAGC 57.792 45.455 0.00 0.00 0.00 4.09
231 232 3.582647 TCCATTTAGACCACAAGAGAGCA 59.417 43.478 0.00 0.00 0.00 4.26
232 233 3.937706 CCATTTAGACCACAAGAGAGCAG 59.062 47.826 0.00 0.00 0.00 4.24
233 234 4.564406 CCATTTAGACCACAAGAGAGCAGT 60.564 45.833 0.00 0.00 0.00 4.40
234 235 5.337571 CCATTTAGACCACAAGAGAGCAGTA 60.338 44.000 0.00 0.00 0.00 2.74
235 236 5.392767 TTTAGACCACAAGAGAGCAGTAG 57.607 43.478 0.00 0.00 0.00 2.57
236 237 2.883026 AGACCACAAGAGAGCAGTAGT 58.117 47.619 0.00 0.00 0.00 2.73
237 238 4.035612 AGACCACAAGAGAGCAGTAGTA 57.964 45.455 0.00 0.00 0.00 1.82
238 239 3.759618 AGACCACAAGAGAGCAGTAGTAC 59.240 47.826 0.00 0.00 0.00 2.73
239 240 2.826725 ACCACAAGAGAGCAGTAGTACC 59.173 50.000 0.00 0.00 0.00 3.34
240 241 2.166664 CCACAAGAGAGCAGTAGTACCC 59.833 54.545 0.00 0.00 0.00 3.69
241 242 2.826128 CACAAGAGAGCAGTAGTACCCA 59.174 50.000 0.00 0.00 0.00 4.51
242 243 3.258372 CACAAGAGAGCAGTAGTACCCAA 59.742 47.826 0.00 0.00 0.00 4.12
243 244 4.081420 CACAAGAGAGCAGTAGTACCCAAT 60.081 45.833 0.00 0.00 0.00 3.16
244 245 5.127194 CACAAGAGAGCAGTAGTACCCAATA 59.873 44.000 0.00 0.00 0.00 1.90
245 246 5.720041 ACAAGAGAGCAGTAGTACCCAATAA 59.280 40.000 0.00 0.00 0.00 1.40
246 247 6.212791 ACAAGAGAGCAGTAGTACCCAATAAA 59.787 38.462 0.00 0.00 0.00 1.40
247 248 6.869206 AGAGAGCAGTAGTACCCAATAAAA 57.131 37.500 0.00 0.00 0.00 1.52
248 249 6.641474 AGAGAGCAGTAGTACCCAATAAAAC 58.359 40.000 0.00 0.00 0.00 2.43
249 250 6.212791 AGAGAGCAGTAGTACCCAATAAAACA 59.787 38.462 0.00 0.00 0.00 2.83
250 251 6.775708 AGAGCAGTAGTACCCAATAAAACAA 58.224 36.000 0.00 0.00 0.00 2.83
251 252 6.653740 AGAGCAGTAGTACCCAATAAAACAAC 59.346 38.462 0.00 0.00 0.00 3.32
252 253 6.540083 AGCAGTAGTACCCAATAAAACAACT 58.460 36.000 0.00 0.00 0.00 3.16
253 254 7.682628 AGCAGTAGTACCCAATAAAACAACTA 58.317 34.615 0.00 0.00 0.00 2.24
254 255 7.605309 AGCAGTAGTACCCAATAAAACAACTAC 59.395 37.037 0.00 0.00 38.59 2.73
255 256 7.605309 GCAGTAGTACCCAATAAAACAACTACT 59.395 37.037 6.46 6.46 45.42 2.57
256 257 9.148104 CAGTAGTACCCAATAAAACAACTACTC 57.852 37.037 8.80 0.00 43.71 2.59
257 258 9.097946 AGTAGTACCCAATAAAACAACTACTCT 57.902 33.333 6.46 0.00 42.61 3.24
265 266 9.774742 CCAATAAAACAACTACTCTATCTTTGC 57.225 33.333 0.00 0.00 0.00 3.68
295 296 2.949451 AGACAACCAGATCTAGCACG 57.051 50.000 0.00 0.00 0.00 5.34
296 297 1.478510 AGACAACCAGATCTAGCACGG 59.521 52.381 0.00 0.00 0.00 4.94
297 298 0.537188 ACAACCAGATCTAGCACGGG 59.463 55.000 0.00 0.00 0.00 5.28
298 299 0.537188 CAACCAGATCTAGCACGGGT 59.463 55.000 0.00 0.00 36.27 5.28
299 300 0.824759 AACCAGATCTAGCACGGGTC 59.175 55.000 0.00 0.00 33.90 4.46
300 301 1.360551 CCAGATCTAGCACGGGTCG 59.639 63.158 0.00 0.00 0.00 4.79
301 302 1.101635 CCAGATCTAGCACGGGTCGA 61.102 60.000 0.00 0.00 0.00 4.20
302 303 0.309302 CAGATCTAGCACGGGTCGAG 59.691 60.000 0.00 0.00 0.00 4.04
303 304 0.180642 AGATCTAGCACGGGTCGAGA 59.819 55.000 0.00 0.00 0.00 4.04
304 305 1.022735 GATCTAGCACGGGTCGAGAA 58.977 55.000 0.00 0.00 0.00 2.87
305 306 1.404391 GATCTAGCACGGGTCGAGAAA 59.596 52.381 0.00 0.00 0.00 2.52
306 307 1.250328 TCTAGCACGGGTCGAGAAAA 58.750 50.000 0.00 0.00 0.00 2.29
307 308 1.201647 TCTAGCACGGGTCGAGAAAAG 59.798 52.381 0.00 0.00 0.00 2.27
308 309 1.201647 CTAGCACGGGTCGAGAAAAGA 59.798 52.381 0.00 0.00 0.00 2.52
309 310 0.319641 AGCACGGGTCGAGAAAAGAC 60.320 55.000 0.00 0.00 37.86 3.01
310 311 0.599204 GCACGGGTCGAGAAAAGACA 60.599 55.000 0.00 0.00 40.20 3.41
311 312 1.939838 GCACGGGTCGAGAAAAGACAT 60.940 52.381 0.00 0.00 40.20 3.06
312 313 2.413837 CACGGGTCGAGAAAAGACATT 58.586 47.619 0.00 0.00 40.20 2.71
313 314 2.157668 CACGGGTCGAGAAAAGACATTG 59.842 50.000 0.00 0.00 40.20 2.82
314 315 1.732259 CGGGTCGAGAAAAGACATTGG 59.268 52.381 0.00 0.00 40.20 3.16
315 316 2.611971 CGGGTCGAGAAAAGACATTGGA 60.612 50.000 0.00 0.00 40.20 3.53
316 317 3.003480 GGGTCGAGAAAAGACATTGGAG 58.997 50.000 0.00 0.00 40.20 3.86
317 318 2.416893 GGTCGAGAAAAGACATTGGAGC 59.583 50.000 0.00 0.00 40.20 4.70
318 319 3.330267 GTCGAGAAAAGACATTGGAGCT 58.670 45.455 0.00 0.00 38.42 4.09
319 320 3.369451 GTCGAGAAAAGACATTGGAGCTC 59.631 47.826 4.71 4.71 38.42 4.09
320 321 3.259374 TCGAGAAAAGACATTGGAGCTCT 59.741 43.478 14.64 0.00 0.00 4.09
321 322 3.616379 CGAGAAAAGACATTGGAGCTCTC 59.384 47.826 14.64 2.45 0.00 3.20
322 323 4.620332 CGAGAAAAGACATTGGAGCTCTCT 60.620 45.833 14.64 5.07 0.00 3.10
323 324 4.577875 AGAAAAGACATTGGAGCTCTCTG 58.422 43.478 14.64 10.95 0.00 3.35
324 325 3.347077 AAAGACATTGGAGCTCTCTGG 57.653 47.619 14.64 4.14 0.00 3.86
325 326 1.949799 AGACATTGGAGCTCTCTGGT 58.050 50.000 14.64 7.48 0.00 4.00
326 327 2.264455 AGACATTGGAGCTCTCTGGTT 58.736 47.619 14.64 0.00 0.00 3.67
327 328 2.641815 AGACATTGGAGCTCTCTGGTTT 59.358 45.455 14.64 0.32 0.00 3.27
328 329 3.006247 GACATTGGAGCTCTCTGGTTTC 58.994 50.000 14.64 0.00 0.00 2.78
329 330 2.290577 ACATTGGAGCTCTCTGGTTTCC 60.291 50.000 14.64 0.00 0.00 3.13
330 331 1.734655 TTGGAGCTCTCTGGTTTCCT 58.265 50.000 14.64 0.00 0.00 3.36
331 332 2.623418 TGGAGCTCTCTGGTTTCCTA 57.377 50.000 14.64 0.00 0.00 2.94
332 333 2.461695 TGGAGCTCTCTGGTTTCCTAG 58.538 52.381 14.64 0.00 0.00 3.02
333 334 2.043115 TGGAGCTCTCTGGTTTCCTAGA 59.957 50.000 14.64 0.00 0.00 2.43
334 335 2.693074 GGAGCTCTCTGGTTTCCTAGAG 59.307 54.545 14.64 11.55 41.36 2.43
335 336 2.595124 GCTCTCTGGTTTCCTAGAGC 57.405 55.000 19.43 19.43 45.41 4.09
337 338 3.518634 CTCTCTGGTTTCCTAGAGCAC 57.481 52.381 0.00 0.00 40.14 4.40
338 339 2.828520 CTCTCTGGTTTCCTAGAGCACA 59.171 50.000 0.00 0.00 40.14 4.57
339 340 2.563179 TCTCTGGTTTCCTAGAGCACAC 59.437 50.000 0.00 0.00 40.14 3.82
340 341 1.623811 TCTGGTTTCCTAGAGCACACC 59.376 52.381 0.00 0.00 0.00 4.16
341 342 0.690762 TGGTTTCCTAGAGCACACCC 59.309 55.000 0.00 0.00 0.00 4.61
342 343 0.035343 GGTTTCCTAGAGCACACCCC 60.035 60.000 0.00 0.00 0.00 4.95
343 344 0.690762 GTTTCCTAGAGCACACCCCA 59.309 55.000 0.00 0.00 0.00 4.96
344 345 0.690762 TTTCCTAGAGCACACCCCAC 59.309 55.000 0.00 0.00 0.00 4.61
345 346 0.472925 TTCCTAGAGCACACCCCACA 60.473 55.000 0.00 0.00 0.00 4.17
346 347 0.472925 TCCTAGAGCACACCCCACAA 60.473 55.000 0.00 0.00 0.00 3.33
347 348 0.620556 CCTAGAGCACACCCCACAAT 59.379 55.000 0.00 0.00 0.00 2.71
348 349 1.837439 CCTAGAGCACACCCCACAATA 59.163 52.381 0.00 0.00 0.00 1.90
349 350 2.439507 CCTAGAGCACACCCCACAATAT 59.560 50.000 0.00 0.00 0.00 1.28
350 351 3.117888 CCTAGAGCACACCCCACAATATT 60.118 47.826 0.00 0.00 0.00 1.28
351 352 3.004752 AGAGCACACCCCACAATATTC 57.995 47.619 0.00 0.00 0.00 1.75
352 353 2.024414 GAGCACACCCCACAATATTCC 58.976 52.381 0.00 0.00 0.00 3.01
353 354 1.357420 AGCACACCCCACAATATTCCA 59.643 47.619 0.00 0.00 0.00 3.53
354 355 1.476488 GCACACCCCACAATATTCCAC 59.524 52.381 0.00 0.00 0.00 4.02
355 356 2.801483 CACACCCCACAATATTCCACA 58.199 47.619 0.00 0.00 0.00 4.17
356 357 2.754552 CACACCCCACAATATTCCACAG 59.245 50.000 0.00 0.00 0.00 3.66
357 358 2.291540 ACACCCCACAATATTCCACAGG 60.292 50.000 0.00 0.00 0.00 4.00
358 359 2.025416 CACCCCACAATATTCCACAGGA 60.025 50.000 0.00 0.00 0.00 3.86
359 360 2.652348 ACCCCACAATATTCCACAGGAA 59.348 45.455 0.30 0.30 46.39 3.36
360 361 3.023832 CCCCACAATATTCCACAGGAAC 58.976 50.000 0.00 0.00 45.07 3.62
361 362 3.309121 CCCCACAATATTCCACAGGAACT 60.309 47.826 0.00 0.00 45.07 3.01
362 363 4.344104 CCCACAATATTCCACAGGAACTT 58.656 43.478 0.00 0.00 45.07 2.66
363 364 5.505780 CCCACAATATTCCACAGGAACTTA 58.494 41.667 0.00 0.00 45.07 2.24
364 365 5.590259 CCCACAATATTCCACAGGAACTTAG 59.410 44.000 0.00 0.00 45.07 2.18
365 366 5.066505 CCACAATATTCCACAGGAACTTAGC 59.933 44.000 0.00 0.00 45.07 3.09
366 367 5.882557 CACAATATTCCACAGGAACTTAGCT 59.117 40.000 0.00 0.00 45.07 3.32
367 368 7.047891 CACAATATTCCACAGGAACTTAGCTA 58.952 38.462 0.00 0.00 45.07 3.32
368 369 7.552687 CACAATATTCCACAGGAACTTAGCTAA 59.447 37.037 5.94 5.94 45.07 3.09
369 370 8.107095 ACAATATTCCACAGGAACTTAGCTAAA 58.893 33.333 7.74 0.00 45.07 1.85
370 371 8.616076 CAATATTCCACAGGAACTTAGCTAAAG 58.384 37.037 7.74 4.69 45.07 1.85
389 390 7.702348 AGCTAAAGTCGAAAATAAATTGGATGC 59.298 33.333 0.00 0.00 0.00 3.91
390 391 7.043391 GCTAAAGTCGAAAATAAATTGGATGCC 60.043 37.037 0.00 0.00 0.00 4.40
391 392 6.530019 AAGTCGAAAATAAATTGGATGCCT 57.470 33.333 0.00 0.00 0.00 4.75
396 397 8.755018 GTCGAAAATAAATTGGATGCCTTATTG 58.245 33.333 0.00 0.00 0.00 1.90
442 444 2.577606 TCAGCGAAATTTGGGAAGGA 57.422 45.000 0.00 0.00 0.00 3.36
458 460 4.640647 GGGAAGGACCATACAAACATTCTC 59.359 45.833 0.00 0.00 41.20 2.87
459 461 4.640647 GGAAGGACCATACAAACATTCTCC 59.359 45.833 0.00 0.00 38.79 3.71
460 462 5.501156 GAAGGACCATACAAACATTCTCCT 58.499 41.667 0.00 0.00 0.00 3.69
461 463 4.848357 AGGACCATACAAACATTCTCCTG 58.152 43.478 0.00 0.00 0.00 3.86
462 464 4.289672 AGGACCATACAAACATTCTCCTGT 59.710 41.667 0.00 0.00 0.00 4.00
482 487 8.155821 TCCTGTAATTTTGAATCACAACGTAA 57.844 30.769 0.00 0.00 38.29 3.18
490 495 7.972623 TTTGAATCACAACGTAAAACGAATT 57.027 28.000 6.44 0.00 45.86 2.17
552 558 0.107456 AGCGTAGGAAGGCCATCATG 59.893 55.000 10.67 0.00 37.19 3.07
621 630 2.036089 GACTCCAACACTCGTCTTCCTT 59.964 50.000 0.00 0.00 0.00 3.36
622 631 2.036089 ACTCCAACACTCGTCTTCCTTC 59.964 50.000 0.00 0.00 0.00 3.46
623 632 1.000607 TCCAACACTCGTCTTCCTTCG 60.001 52.381 0.00 0.00 0.00 3.79
624 633 1.269621 CCAACACTCGTCTTCCTTCGT 60.270 52.381 0.00 0.00 0.00 3.85
625 634 2.052157 CAACACTCGTCTTCCTTCGTC 58.948 52.381 0.00 0.00 0.00 4.20
626 635 0.597072 ACACTCGTCTTCCTTCGTCC 59.403 55.000 0.00 0.00 0.00 4.79
627 636 0.109226 CACTCGTCTTCCTTCGTCCC 60.109 60.000 0.00 0.00 0.00 4.46
819 844 1.134438 ACCACCTTCTTCCACCTCCC 61.134 60.000 0.00 0.00 0.00 4.30
852 877 3.412408 GTCCCCTCCAAGCCCCTC 61.412 72.222 0.00 0.00 0.00 4.30
900 925 1.500736 CCCCCTTTTAGCATCTCCCAT 59.499 52.381 0.00 0.00 0.00 4.00
922 947 2.765807 CCTCGCCTCCCATCACCT 60.766 66.667 0.00 0.00 0.00 4.00
929 954 0.327000 CCTCCCATCACCTCCTCCTT 60.327 60.000 0.00 0.00 0.00 3.36
930 955 0.835941 CTCCCATCACCTCCTCCTTG 59.164 60.000 0.00 0.00 0.00 3.61
931 956 0.621571 TCCCATCACCTCCTCCTTGG 60.622 60.000 0.00 0.00 37.10 3.61
932 957 0.621571 CCCATCACCTCCTCCTTGGA 60.622 60.000 0.00 0.00 43.86 3.53
933 958 1.289160 CCATCACCTCCTCCTTGGAA 58.711 55.000 0.00 0.00 45.63 3.53
940 971 1.563410 CCTCCTCCTTGGAAGAAGCAT 59.437 52.381 0.00 0.00 45.63 3.79
942 973 2.238144 CTCCTCCTTGGAAGAAGCATCA 59.762 50.000 0.00 0.00 45.63 3.07
1216 1715 0.096976 CGCCTCCAACAAGTAATGCG 59.903 55.000 0.00 0.00 34.52 4.73
1218 1717 1.821216 CCTCCAACAAGTAATGCGGT 58.179 50.000 0.00 0.00 0.00 5.68
1219 1718 2.937873 GCCTCCAACAAGTAATGCGGTA 60.938 50.000 0.00 0.00 0.00 4.02
1221 1720 2.351726 CTCCAACAAGTAATGCGGTAGC 59.648 50.000 0.00 0.00 45.41 3.58
1253 1752 2.556189 AGCTGTAGTGTCACTCTGTCAG 59.444 50.000 9.26 14.00 0.00 3.51
1281 1796 3.321682 GTCTTCAGAGATGGATGGAGAGG 59.678 52.174 0.00 0.00 31.61 3.69
1287 1802 1.216678 AGATGGATGGAGAGGTCGACT 59.783 52.381 16.46 0.90 0.00 4.18
1295 1810 1.612199 GGAGAGGTCGACTGACTGACT 60.612 57.143 16.46 1.29 44.83 3.41
1297 1812 0.109504 GAGGTCGACTGACTGACTGC 60.110 60.000 16.46 0.00 44.83 4.40
1300 1815 1.269831 GGTCGACTGACTGACTGCTTT 60.270 52.381 16.46 0.00 44.83 3.51
1305 1820 3.544834 CGACTGACTGACTGCTTTGTTTG 60.545 47.826 0.00 0.00 0.00 2.93
1471 1999 4.241681 GTTCTCTCCAGCTACAACTTCAG 58.758 47.826 0.00 0.00 0.00 3.02
1491 2019 0.746923 TGCTGGCATCTCACTCATGC 60.747 55.000 0.00 0.00 45.13 4.06
1507 2035 4.225042 ACTCATGCTGTACCAGGTAATCAA 59.775 41.667 0.00 0.00 31.21 2.57
1508 2036 4.513442 TCATGCTGTACCAGGTAATCAAC 58.487 43.478 0.00 0.00 31.21 3.18
1514 2042 5.935789 GCTGTACCAGGTAATCAACTTGTTA 59.064 40.000 0.00 0.00 33.42 2.41
1516 2044 7.120726 GCTGTACCAGGTAATCAACTTGTTAAT 59.879 37.037 0.00 0.00 33.42 1.40
1578 2109 6.119240 AGCTCAATACTGGCATATGTGTAT 57.881 37.500 4.29 8.13 0.00 2.29
1700 2243 5.333035 CGAGTTCTTCGCTGTAATTTCAACA 60.333 40.000 0.00 0.00 43.22 3.33
1706 2249 5.845985 TCGCTGTAATTTCAACAGAAGAG 57.154 39.130 10.41 0.35 45.89 2.85
1709 2252 5.348724 CGCTGTAATTTCAACAGAAGAGCTA 59.651 40.000 10.41 0.00 45.89 3.32
1788 2331 0.398696 AACCGGAATGTACAGGTGCA 59.601 50.000 9.46 0.00 38.26 4.57
1806 2349 2.094597 TGCATCCTGCTTAAATGTGCAC 60.095 45.455 10.75 10.75 45.31 4.57
1814 2357 4.588899 TGCTTAAATGTGCACTCCATAGT 58.411 39.130 19.41 0.00 35.91 2.12
1817 2360 5.220739 GCTTAAATGTGCACTCCATAGTCTG 60.221 44.000 19.41 0.24 31.97 3.51
1820 2363 4.767578 ATGTGCACTCCATAGTCTGAAT 57.232 40.909 19.41 0.00 31.97 2.57
1856 2402 8.446273 CGATCTTCTTACAATAATATTGGCCTG 58.554 37.037 16.36 5.02 0.00 4.85
1864 2410 6.064717 ACAATAATATTGGCCTGACCTTCTC 58.935 40.000 16.36 0.00 40.22 2.87
1866 2412 7.072454 ACAATAATATTGGCCTGACCTTCTCTA 59.928 37.037 16.36 0.00 40.22 2.43
1883 2429 6.151817 CCTTCTCTATTCCCCTTTTGTTTCTG 59.848 42.308 0.00 0.00 0.00 3.02
1931 2478 2.682352 TGTTGCCATGGTGACGATATTG 59.318 45.455 14.67 0.00 0.00 1.90
1959 2506 4.981674 ACATGACAAACATTTTAACGGCTG 59.018 37.500 0.00 0.00 37.07 4.85
2035 2585 2.197792 TGCATGATGGTACGTCGTAC 57.802 50.000 24.23 24.23 38.19 3.67
2068 2641 4.473477 AGCTAATGACTTCACTACACCC 57.527 45.455 0.00 0.00 0.00 4.61
2076 2649 2.104281 ACTTCACTACACCCACCTGTTC 59.896 50.000 0.00 0.00 0.00 3.18
2090 2663 5.454187 CCCACCTGTTCTAAGAGTGTAACAA 60.454 44.000 0.00 0.00 41.43 2.83
2091 2664 5.465724 CCACCTGTTCTAAGAGTGTAACAAC 59.534 44.000 0.00 0.00 41.43 3.32
2092 2665 5.175126 CACCTGTTCTAAGAGTGTAACAACG 59.825 44.000 0.00 0.00 41.43 4.10
2118 2691 1.399440 CCAACATGATTGCTGACCTCG 59.601 52.381 0.00 0.00 0.00 4.63
2133 2706 0.605589 CCTCGGTGCACTTTCTCTCT 59.394 55.000 17.98 0.00 0.00 3.10
2161 2734 5.047448 TCTCCTGCAGATTATATCAGCTGTC 60.047 44.000 17.39 2.32 41.72 3.51
2164 2737 4.313282 TGCAGATTATATCAGCTGTCAGC 58.687 43.478 17.48 17.48 41.72 4.26
2192 2765 6.540189 CGGTATGACAGATCTTTCTTTCCATT 59.460 38.462 15.92 0.00 29.19 3.16
2204 2777 7.745015 TCTTTCTTTCCATTTAATCGGTTACG 58.255 34.615 0.00 0.00 42.74 3.18
2266 2839 4.020573 TCGGTTAGTTCATGTTGTCCTCAT 60.021 41.667 0.00 0.00 0.00 2.90
2272 2852 2.892374 TCATGTTGTCCTCATAGTGCG 58.108 47.619 0.00 0.00 0.00 5.34
2274 2854 0.320050 TGTTGTCCTCATAGTGCGCA 59.680 50.000 5.66 5.66 0.00 6.09
2277 2857 1.878522 GTCCTCATAGTGCGCACGG 60.879 63.158 32.94 26.60 36.20 4.94
2295 2875 0.094730 GGACGCACACATAAAGACGC 59.905 55.000 0.00 0.00 0.00 5.19
2444 3172 3.682858 TGTTACTTAACAATGCGCTCTCC 59.317 43.478 9.73 0.00 42.66 3.71
2617 3346 9.543018 GACTGAGTATTTATTTTGTTTCCGAAG 57.457 33.333 0.00 0.00 0.00 3.79
2773 3502 6.227298 TGAAATTTTAACTTGCCTTGGACA 57.773 33.333 0.00 0.00 0.00 4.02
2829 3558 4.899352 AACCAACTCTAGCATGAAGTCT 57.101 40.909 0.00 0.00 0.00 3.24
2846 3575 8.869897 CATGAAGTCTGATGAAATGGAAAAATG 58.130 33.333 0.00 0.00 0.00 2.32
2852 3581 8.919661 GTCTGATGAAATGGAAAAATGAAAGAC 58.080 33.333 0.00 0.00 0.00 3.01
2955 3687 7.150783 AGTGCTTTCAAAGGTAGAATTCATC 57.849 36.000 8.44 0.00 0.00 2.92
2964 3696 2.536928 GGTAGAATTCATCGTTGTGCGC 60.537 50.000 8.44 0.00 41.07 6.09
3185 3918 3.260128 TGCCCACATAAATGTTTGCATGA 59.740 39.130 10.63 0.00 38.82 3.07
3253 4012 7.121168 TCACATGTTGATAATCACTTTTCTCCC 59.879 37.037 0.00 0.00 0.00 4.30
3296 4055 6.150474 CACTAAACAAGATACCCATTTCGGTT 59.850 38.462 0.00 0.00 37.34 4.44
3317 4076 3.689347 TGCTGGTGTCTTGCTATTCAAT 58.311 40.909 0.00 0.00 33.57 2.57
3320 4079 4.082571 GCTGGTGTCTTGCTATTCAATGTT 60.083 41.667 0.00 0.00 33.57 2.71
3329 4088 7.119846 GTCTTGCTATTCAATGTTCCTGTTAGT 59.880 37.037 0.00 0.00 33.57 2.24
3356 4115 8.611757 GTGGAAAATTTGTTCAGCATAGTTTTT 58.388 29.630 0.00 0.00 29.33 1.94
3360 4119 9.606631 AAAATTTGTTCAGCATAGTTTTTGGTA 57.393 25.926 0.00 0.00 0.00 3.25
3365 4124 8.453238 TGTTCAGCATAGTTTTTGGTAAGTAA 57.547 30.769 0.00 0.00 0.00 2.24
3367 4126 9.556030 GTTCAGCATAGTTTTTGGTAAGTAATC 57.444 33.333 0.00 0.00 0.00 1.75
3369 4128 8.946085 TCAGCATAGTTTTTGGTAAGTAATCTG 58.054 33.333 0.00 0.00 0.00 2.90
3378 4137 9.959749 TTTTTGGTAAGTAATCTGTTTCATCAC 57.040 29.630 0.00 0.00 0.00 3.06
3379 4138 7.681939 TTGGTAAGTAATCTGTTTCATCACC 57.318 36.000 0.00 0.00 0.00 4.02
3380 4139 6.774673 TGGTAAGTAATCTGTTTCATCACCA 58.225 36.000 0.00 0.00 0.00 4.17
3381 4140 6.653320 TGGTAAGTAATCTGTTTCATCACCAC 59.347 38.462 0.00 0.00 0.00 4.16
3383 4142 6.808008 AAGTAATCTGTTTCATCACCACTG 57.192 37.500 0.00 0.00 0.00 3.66
3385 4144 2.566833 TCTGTTTCATCACCACTGGG 57.433 50.000 0.00 0.00 41.29 4.45
3399 4160 2.424601 CCACTGGGTTATGAACATGCTG 59.575 50.000 0.00 0.00 0.00 4.41
3403 4164 2.102578 GGGTTATGAACATGCTGCCTT 58.897 47.619 0.00 0.00 0.00 4.35
3411 4172 1.077212 CATGCTGCCTTGCTACCCT 60.077 57.895 0.00 0.00 0.00 4.34
3413 4174 1.143813 ATGCTGCCTTGCTACCCTAT 58.856 50.000 0.00 0.00 0.00 2.57
3418 4179 1.486310 TGCCTTGCTACCCTATGAGTG 59.514 52.381 0.00 0.00 0.00 3.51
3419 4180 1.811941 GCCTTGCTACCCTATGAGTGC 60.812 57.143 0.00 0.00 0.00 4.40
3420 4181 1.486310 CCTTGCTACCCTATGAGTGCA 59.514 52.381 0.00 0.00 0.00 4.57
3421 4182 2.092968 CCTTGCTACCCTATGAGTGCAA 60.093 50.000 0.00 0.00 37.96 4.08
3423 4184 1.209504 TGCTACCCTATGAGTGCAACC 59.790 52.381 0.00 0.00 37.80 3.77
3424 4185 1.486726 GCTACCCTATGAGTGCAACCT 59.513 52.381 0.00 0.00 37.80 3.50
3425 4186 2.483889 GCTACCCTATGAGTGCAACCTC 60.484 54.545 0.00 0.00 37.80 3.85
3427 4188 1.556911 ACCCTATGAGTGCAACCTCTG 59.443 52.381 5.97 0.00 37.80 3.35
3428 4189 1.833630 CCCTATGAGTGCAACCTCTGA 59.166 52.381 5.97 0.00 37.80 3.27
3429 4190 2.437281 CCCTATGAGTGCAACCTCTGAT 59.563 50.000 5.97 0.00 37.80 2.90
3430 4191 3.464907 CCTATGAGTGCAACCTCTGATG 58.535 50.000 5.97 0.00 37.80 3.07
3431 4192 1.747709 ATGAGTGCAACCTCTGATGC 58.252 50.000 5.97 0.00 42.86 3.91
3436 4197 2.034104 TGCAACCTCTGATGCATCTC 57.966 50.000 26.32 4.13 46.87 2.75
3438 4199 1.941294 GCAACCTCTGATGCATCTCTG 59.059 52.381 26.32 16.25 42.12 3.35
3443 4205 4.029520 ACCTCTGATGCATCTCTGTACTT 58.970 43.478 26.32 2.03 0.00 2.24
3517 4279 5.491982 AGATGTCCAAGTCCTAATGTTCAC 58.508 41.667 0.00 0.00 0.00 3.18
3528 4290 0.674895 AATGTTCACTCTCCTGGCGC 60.675 55.000 0.00 0.00 0.00 6.53
3545 4307 1.136446 GCGCGACTGTAACACGAAAAT 60.136 47.619 12.10 0.00 0.00 1.82
3618 4384 3.181774 CGTTTGAACTTGTCGAGTCGATT 59.818 43.478 19.75 8.75 37.72 3.34
3704 4481 1.024271 TTTGCAGGACTTGTCACAGC 58.976 50.000 3.08 4.19 0.00 4.40
3705 4482 0.181114 TTGCAGGACTTGTCACAGCT 59.819 50.000 3.08 0.00 0.00 4.24
3811 4592 1.142474 GGAATTTGCTGTTGCTGTGC 58.858 50.000 0.00 0.00 40.48 4.57
3836 4617 2.178580 AGAGCTTCCTCTGTTCCTCTG 58.821 52.381 0.00 0.00 46.51 3.35
3837 4618 2.175202 GAGCTTCCTCTGTTCCTCTGA 58.825 52.381 0.00 0.00 35.16 3.27
3838 4619 2.765699 GAGCTTCCTCTGTTCCTCTGAT 59.234 50.000 0.00 0.00 35.16 2.90
3839 4620 3.957497 GAGCTTCCTCTGTTCCTCTGATA 59.043 47.826 0.00 0.00 35.16 2.15
3851 4636 9.003658 TCTGTTCCTCTGATATTTTTCAGTTTC 57.996 33.333 1.76 0.00 43.02 2.78
3914 4699 9.545105 CCAATCTTTGGCTATGATCTAGATATC 57.455 37.037 4.89 0.00 45.17 1.63
3915 4700 9.545105 CAATCTTTGGCTATGATCTAGATATCC 57.455 37.037 4.89 3.59 0.00 2.59
3992 4778 5.127031 GGTATTGGGATCTTAGCAAAGCAAA 59.873 40.000 0.00 0.00 32.36 3.68
4010 4796 6.639632 AGCAAAGCTTAACATGGGTATATG 57.360 37.500 0.00 0.00 33.89 1.78
4103 4898 6.712095 TCACAGCAAGAATCATTTGAGTAGTT 59.288 34.615 0.00 0.00 0.00 2.24
4213 5012 4.147322 GCGCGCACGTGCTTATGT 62.147 61.111 35.27 0.00 46.85 2.29
4214 5013 2.794355 GCGCGCACGTGCTTATGTA 61.794 57.895 35.27 0.00 46.85 2.29
4216 5015 1.410737 CGCGCACGTGCTTATGTAGT 61.411 55.000 35.27 0.00 39.32 2.73
4217 5016 0.719465 GCGCACGTGCTTATGTAGTT 59.281 50.000 35.27 0.00 39.32 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.091771 CGCCGCATGTGAGAAGGATT 61.092 55.000 8.11 0.00 0.00 3.01
1 2 1.522355 CGCCGCATGTGAGAAGGAT 60.522 57.895 8.11 0.00 0.00 3.24
2 3 2.125552 CGCCGCATGTGAGAAGGA 60.126 61.111 8.11 0.00 0.00 3.36
3 4 3.869272 GCGCCGCATGTGAGAAGG 61.869 66.667 3.15 0.00 0.00 3.46
4 5 3.869272 GGCGCCGCATGTGAGAAG 61.869 66.667 12.58 0.00 0.00 2.85
5 6 4.695993 TGGCGCCGCATGTGAGAA 62.696 61.111 23.90 0.00 0.00 2.87
6 7 4.695993 TTGGCGCCGCATGTGAGA 62.696 61.111 23.90 0.00 0.00 3.27
7 8 3.736100 TTTGGCGCCGCATGTGAG 61.736 61.111 23.90 2.49 0.00 3.51
8 9 4.036804 GTTTGGCGCCGCATGTGA 62.037 61.111 23.90 0.00 0.00 3.58
11 12 4.132441 ATGGTTTGGCGCCGCATG 62.132 61.111 23.90 0.00 0.00 4.06
12 13 4.132441 CATGGTTTGGCGCCGCAT 62.132 61.111 23.90 8.03 0.00 4.73
20 21 1.228831 TGAGGTGGGCATGGTTTGG 60.229 57.895 0.00 0.00 0.00 3.28
21 22 0.827089 TGTGAGGTGGGCATGGTTTG 60.827 55.000 0.00 0.00 0.00 2.93
22 23 0.105760 TTGTGAGGTGGGCATGGTTT 60.106 50.000 0.00 0.00 0.00 3.27
23 24 0.540365 CTTGTGAGGTGGGCATGGTT 60.540 55.000 0.00 0.00 0.00 3.67
24 25 1.075482 CTTGTGAGGTGGGCATGGT 59.925 57.895 0.00 0.00 0.00 3.55
25 26 0.962356 GTCTTGTGAGGTGGGCATGG 60.962 60.000 0.00 0.00 0.00 3.66
26 27 0.250858 TGTCTTGTGAGGTGGGCATG 60.251 55.000 0.00 0.00 0.00 4.06
27 28 0.700564 ATGTCTTGTGAGGTGGGCAT 59.299 50.000 0.00 0.00 0.00 4.40
28 29 0.036732 GATGTCTTGTGAGGTGGGCA 59.963 55.000 0.00 0.00 0.00 5.36
29 30 0.036732 TGATGTCTTGTGAGGTGGGC 59.963 55.000 0.00 0.00 0.00 5.36
30 31 1.813513 GTGATGTCTTGTGAGGTGGG 58.186 55.000 0.00 0.00 0.00 4.61
31 32 1.000843 TCGTGATGTCTTGTGAGGTGG 59.999 52.381 0.00 0.00 0.00 4.61
32 33 2.288457 ACTCGTGATGTCTTGTGAGGTG 60.288 50.000 0.00 0.00 0.00 4.00
33 34 1.964223 ACTCGTGATGTCTTGTGAGGT 59.036 47.619 0.00 0.00 0.00 3.85
34 35 2.029918 TGACTCGTGATGTCTTGTGAGG 60.030 50.000 0.00 0.00 35.63 3.86
35 36 2.983136 GTGACTCGTGATGTCTTGTGAG 59.017 50.000 0.00 0.00 35.63 3.51
36 37 2.288213 GGTGACTCGTGATGTCTTGTGA 60.288 50.000 0.00 0.00 35.63 3.58
37 38 2.061773 GGTGACTCGTGATGTCTTGTG 58.938 52.381 0.00 0.00 35.63 3.33
38 39 1.000955 GGGTGACTCGTGATGTCTTGT 59.999 52.381 0.00 0.00 35.63 3.16
39 40 1.273606 AGGGTGACTCGTGATGTCTTG 59.726 52.381 0.00 0.00 35.63 3.02
40 41 1.546476 GAGGGTGACTCGTGATGTCTT 59.454 52.381 0.00 0.00 36.29 3.01
41 42 1.178276 GAGGGTGACTCGTGATGTCT 58.822 55.000 0.00 0.00 36.29 3.41
42 43 3.723554 GAGGGTGACTCGTGATGTC 57.276 57.895 0.00 0.00 36.29 3.06
50 51 2.952978 AGACATATCGTGAGGGTGACTC 59.047 50.000 0.00 0.00 46.78 3.36
51 52 3.019799 AGACATATCGTGAGGGTGACT 57.980 47.619 0.00 0.00 0.00 3.41
52 53 4.023878 GTCTAGACATATCGTGAGGGTGAC 60.024 50.000 18.20 0.00 0.00 3.67
53 54 4.135306 GTCTAGACATATCGTGAGGGTGA 58.865 47.826 18.20 0.00 0.00 4.02
54 55 3.883489 TGTCTAGACATATCGTGAGGGTG 59.117 47.826 21.74 0.00 36.21 4.61
55 56 3.884091 GTGTCTAGACATATCGTGAGGGT 59.116 47.826 27.54 0.00 43.97 4.34
56 57 3.253677 GGTGTCTAGACATATCGTGAGGG 59.746 52.174 27.54 0.00 43.97 4.30
57 58 4.023622 CAGGTGTCTAGACATATCGTGAGG 60.024 50.000 27.54 7.42 43.97 3.86
58 59 4.816925 TCAGGTGTCTAGACATATCGTGAG 59.183 45.833 27.54 12.22 43.97 3.51
59 60 4.777463 TCAGGTGTCTAGACATATCGTGA 58.223 43.478 27.54 24.82 43.97 4.35
60 61 5.239525 TCATCAGGTGTCTAGACATATCGTG 59.760 44.000 27.54 23.25 43.97 4.35
61 62 5.377478 TCATCAGGTGTCTAGACATATCGT 58.623 41.667 27.54 14.02 43.97 3.73
62 63 5.948992 TCATCAGGTGTCTAGACATATCG 57.051 43.478 27.54 16.28 43.97 2.92
63 64 6.155827 GCTTCATCAGGTGTCTAGACATATC 58.844 44.000 27.54 19.04 43.97 1.63
64 65 5.600069 TGCTTCATCAGGTGTCTAGACATAT 59.400 40.000 27.54 16.53 43.97 1.78
65 66 4.956075 TGCTTCATCAGGTGTCTAGACATA 59.044 41.667 27.54 14.28 43.97 2.29
66 67 3.771479 TGCTTCATCAGGTGTCTAGACAT 59.229 43.478 27.54 10.98 43.97 3.06
67 68 3.165071 TGCTTCATCAGGTGTCTAGACA 58.835 45.455 21.74 21.74 39.32 3.41
68 69 3.876274 TGCTTCATCAGGTGTCTAGAC 57.124 47.619 16.32 16.32 0.00 2.59
69 70 3.771479 ACATGCTTCATCAGGTGTCTAGA 59.229 43.478 0.00 0.00 29.04 2.43
70 71 4.134379 ACATGCTTCATCAGGTGTCTAG 57.866 45.455 0.00 0.00 29.04 2.43
71 72 4.558226 AACATGCTTCATCAGGTGTCTA 57.442 40.909 0.00 0.00 30.80 2.59
72 73 3.430042 AACATGCTTCATCAGGTGTCT 57.570 42.857 0.00 0.00 30.80 3.41
73 74 4.510038 AAAACATGCTTCATCAGGTGTC 57.490 40.909 0.00 0.00 30.80 3.67
74 75 6.095440 GGTATAAAACATGCTTCATCAGGTGT 59.905 38.462 0.00 0.00 30.80 4.16
75 76 6.460123 GGGTATAAAACATGCTTCATCAGGTG 60.460 42.308 0.00 0.00 30.80 4.00
76 77 5.594317 GGGTATAAAACATGCTTCATCAGGT 59.406 40.000 0.00 0.00 31.74 4.00
77 78 5.010012 GGGGTATAAAACATGCTTCATCAGG 59.990 44.000 0.00 0.00 0.00 3.86
78 79 5.829924 AGGGGTATAAAACATGCTTCATCAG 59.170 40.000 0.00 0.00 0.00 2.90
79 80 5.765510 AGGGGTATAAAACATGCTTCATCA 58.234 37.500 0.00 0.00 0.00 3.07
80 81 6.064717 AGAGGGGTATAAAACATGCTTCATC 58.935 40.000 0.00 0.00 0.00 2.92
81 82 6.018433 AGAGGGGTATAAAACATGCTTCAT 57.982 37.500 0.00 0.00 0.00 2.57
82 83 5.450818 AGAGGGGTATAAAACATGCTTCA 57.549 39.130 0.00 0.00 0.00 3.02
83 84 6.775594 AAAGAGGGGTATAAAACATGCTTC 57.224 37.500 0.00 0.00 0.00 3.86
84 85 6.954102 AGAAAAGAGGGGTATAAAACATGCTT 59.046 34.615 0.00 0.00 0.00 3.91
85 86 6.378280 CAGAAAAGAGGGGTATAAAACATGCT 59.622 38.462 0.00 0.00 0.00 3.79
86 87 6.564328 CAGAAAAGAGGGGTATAAAACATGC 58.436 40.000 0.00 0.00 0.00 4.06
87 88 6.152661 TGCAGAAAAGAGGGGTATAAAACATG 59.847 38.462 0.00 0.00 0.00 3.21
88 89 6.252995 TGCAGAAAAGAGGGGTATAAAACAT 58.747 36.000 0.00 0.00 0.00 2.71
89 90 5.636123 TGCAGAAAAGAGGGGTATAAAACA 58.364 37.500 0.00 0.00 0.00 2.83
90 91 5.944007 TCTGCAGAAAAGAGGGGTATAAAAC 59.056 40.000 15.67 0.00 0.00 2.43
91 92 6.134535 TCTGCAGAAAAGAGGGGTATAAAA 57.865 37.500 15.67 0.00 0.00 1.52
92 93 5.772393 TCTGCAGAAAAGAGGGGTATAAA 57.228 39.130 15.67 0.00 0.00 1.40
93 94 5.975988 ATCTGCAGAAAAGAGGGGTATAA 57.024 39.130 22.50 0.00 0.00 0.98
94 95 5.975988 AATCTGCAGAAAAGAGGGGTATA 57.024 39.130 22.50 0.00 0.00 1.47
95 96 4.870021 AATCTGCAGAAAAGAGGGGTAT 57.130 40.909 22.50 0.00 0.00 2.73
96 97 4.657814 AAATCTGCAGAAAAGAGGGGTA 57.342 40.909 22.50 0.00 0.00 3.69
97 98 3.532641 AAATCTGCAGAAAAGAGGGGT 57.467 42.857 22.50 0.00 0.00 4.95
98 99 4.322273 GGAAAAATCTGCAGAAAAGAGGGG 60.322 45.833 22.50 0.00 0.00 4.79
99 100 4.281688 TGGAAAAATCTGCAGAAAAGAGGG 59.718 41.667 22.50 0.00 0.00 4.30
100 101 5.458041 TGGAAAAATCTGCAGAAAAGAGG 57.542 39.130 22.50 0.00 0.00 3.69
101 102 6.742109 TCTTGGAAAAATCTGCAGAAAAGAG 58.258 36.000 22.50 10.56 0.00 2.85
102 103 6.322201 ACTCTTGGAAAAATCTGCAGAAAAGA 59.678 34.615 22.50 17.39 0.00 2.52
103 104 6.510536 ACTCTTGGAAAAATCTGCAGAAAAG 58.489 36.000 22.50 14.51 0.00 2.27
104 105 6.469782 ACTCTTGGAAAAATCTGCAGAAAA 57.530 33.333 22.50 0.00 0.00 2.29
105 106 5.277974 CGACTCTTGGAAAAATCTGCAGAAA 60.278 40.000 22.50 7.55 0.00 2.52
106 107 4.214119 CGACTCTTGGAAAAATCTGCAGAA 59.786 41.667 22.50 4.23 0.00 3.02
107 108 3.748048 CGACTCTTGGAAAAATCTGCAGA 59.252 43.478 20.79 20.79 0.00 4.26
108 109 3.748048 TCGACTCTTGGAAAAATCTGCAG 59.252 43.478 7.63 7.63 0.00 4.41
109 110 3.738982 TCGACTCTTGGAAAAATCTGCA 58.261 40.909 0.00 0.00 0.00 4.41
110 111 3.748568 ACTCGACTCTTGGAAAAATCTGC 59.251 43.478 0.00 0.00 0.00 4.26
111 112 5.578727 CCTACTCGACTCTTGGAAAAATCTG 59.421 44.000 0.00 0.00 0.00 2.90
112 113 5.337652 CCCTACTCGACTCTTGGAAAAATCT 60.338 44.000 0.00 0.00 0.00 2.40
113 114 4.870991 CCCTACTCGACTCTTGGAAAAATC 59.129 45.833 0.00 0.00 0.00 2.17
114 115 4.530946 TCCCTACTCGACTCTTGGAAAAAT 59.469 41.667 0.00 0.00 0.00 1.82
115 116 3.899360 TCCCTACTCGACTCTTGGAAAAA 59.101 43.478 0.00 0.00 0.00 1.94
116 117 3.503365 TCCCTACTCGACTCTTGGAAAA 58.497 45.455 0.00 0.00 0.00 2.29
117 118 3.165087 TCCCTACTCGACTCTTGGAAA 57.835 47.619 0.00 0.00 0.00 3.13
118 119 2.824341 GTTCCCTACTCGACTCTTGGAA 59.176 50.000 0.00 0.00 0.00 3.53
119 120 2.224942 TGTTCCCTACTCGACTCTTGGA 60.225 50.000 0.00 0.00 0.00 3.53
120 121 2.168496 TGTTCCCTACTCGACTCTTGG 58.832 52.381 0.00 0.00 0.00 3.61
121 122 3.936372 TTGTTCCCTACTCGACTCTTG 57.064 47.619 0.00 0.00 0.00 3.02
122 123 3.640029 TGTTTGTTCCCTACTCGACTCTT 59.360 43.478 0.00 0.00 0.00 2.85
123 124 3.228453 TGTTTGTTCCCTACTCGACTCT 58.772 45.455 0.00 0.00 0.00 3.24
124 125 3.655276 TGTTTGTTCCCTACTCGACTC 57.345 47.619 0.00 0.00 0.00 3.36
125 126 3.640029 TCTTGTTTGTTCCCTACTCGACT 59.360 43.478 0.00 0.00 0.00 4.18
126 127 3.986277 TCTTGTTTGTTCCCTACTCGAC 58.014 45.455 0.00 0.00 0.00 4.20
127 128 4.675976 TTCTTGTTTGTTCCCTACTCGA 57.324 40.909 0.00 0.00 0.00 4.04
128 129 5.054477 TCTTTCTTGTTTGTTCCCTACTCG 58.946 41.667 0.00 0.00 0.00 4.18
129 130 8.617290 TTATCTTTCTTGTTTGTTCCCTACTC 57.383 34.615 0.00 0.00 0.00 2.59
130 131 9.014297 CATTATCTTTCTTGTTTGTTCCCTACT 57.986 33.333 0.00 0.00 0.00 2.57
131 132 7.755373 GCATTATCTTTCTTGTTTGTTCCCTAC 59.245 37.037 0.00 0.00 0.00 3.18
132 133 7.093945 GGCATTATCTTTCTTGTTTGTTCCCTA 60.094 37.037 0.00 0.00 0.00 3.53
133 134 6.295292 GGCATTATCTTTCTTGTTTGTTCCCT 60.295 38.462 0.00 0.00 0.00 4.20
134 135 5.869344 GGCATTATCTTTCTTGTTTGTTCCC 59.131 40.000 0.00 0.00 0.00 3.97
135 136 6.454795 TGGCATTATCTTTCTTGTTTGTTCC 58.545 36.000 0.00 0.00 0.00 3.62
136 137 7.147976 ACTGGCATTATCTTTCTTGTTTGTTC 58.852 34.615 0.00 0.00 0.00 3.18
137 138 7.054491 ACTGGCATTATCTTTCTTGTTTGTT 57.946 32.000 0.00 0.00 0.00 2.83
138 139 6.655078 ACTGGCATTATCTTTCTTGTTTGT 57.345 33.333 0.00 0.00 0.00 2.83
139 140 8.514594 TCTTACTGGCATTATCTTTCTTGTTTG 58.485 33.333 0.00 0.00 0.00 2.93
140 141 8.635765 TCTTACTGGCATTATCTTTCTTGTTT 57.364 30.769 0.00 0.00 0.00 2.83
141 142 8.814038 ATCTTACTGGCATTATCTTTCTTGTT 57.186 30.769 0.00 0.00 0.00 2.83
148 149 8.482128 GCCTAGATATCTTACTGGCATTATCTT 58.518 37.037 22.54 0.00 38.79 2.40
149 150 7.621285 TGCCTAGATATCTTACTGGCATTATCT 59.379 37.037 24.57 0.00 43.09 1.98
150 151 7.786030 TGCCTAGATATCTTACTGGCATTATC 58.214 38.462 24.57 7.82 43.09 1.75
151 152 7.739995 TGCCTAGATATCTTACTGGCATTAT 57.260 36.000 24.57 0.00 43.09 1.28
156 157 6.814146 GTGTTATGCCTAGATATCTTACTGGC 59.186 42.308 21.53 21.53 39.33 4.85
157 158 8.128322 AGTGTTATGCCTAGATATCTTACTGG 57.872 38.462 11.25 9.50 0.00 4.00
158 159 9.988815 AAAGTGTTATGCCTAGATATCTTACTG 57.011 33.333 11.25 0.00 0.00 2.74
159 160 9.988815 CAAAGTGTTATGCCTAGATATCTTACT 57.011 33.333 11.25 0.18 0.00 2.24
160 161 9.982651 TCAAAGTGTTATGCCTAGATATCTTAC 57.017 33.333 11.25 1.59 0.00 2.34
162 163 9.905713 TTTCAAAGTGTTATGCCTAGATATCTT 57.094 29.630 11.25 0.00 0.00 2.40
163 164 9.905713 TTTTCAAAGTGTTATGCCTAGATATCT 57.094 29.630 10.73 10.73 0.00 1.98
164 165 9.937175 GTTTTCAAAGTGTTATGCCTAGATATC 57.063 33.333 0.00 0.00 0.00 1.63
165 166 9.461312 TGTTTTCAAAGTGTTATGCCTAGATAT 57.539 29.630 0.00 0.00 0.00 1.63
166 167 8.856153 TGTTTTCAAAGTGTTATGCCTAGATA 57.144 30.769 0.00 0.00 0.00 1.98
167 168 7.094205 CCTGTTTTCAAAGTGTTATGCCTAGAT 60.094 37.037 0.00 0.00 0.00 1.98
168 169 6.206634 CCTGTTTTCAAAGTGTTATGCCTAGA 59.793 38.462 0.00 0.00 0.00 2.43
169 170 6.206634 TCCTGTTTTCAAAGTGTTATGCCTAG 59.793 38.462 0.00 0.00 0.00 3.02
170 171 6.065374 TCCTGTTTTCAAAGTGTTATGCCTA 58.935 36.000 0.00 0.00 0.00 3.93
171 172 4.892934 TCCTGTTTTCAAAGTGTTATGCCT 59.107 37.500 0.00 0.00 0.00 4.75
172 173 5.195001 TCCTGTTTTCAAAGTGTTATGCC 57.805 39.130 0.00 0.00 0.00 4.40
173 174 7.224557 ACAAATCCTGTTTTCAAAGTGTTATGC 59.775 33.333 0.00 0.00 32.99 3.14
174 175 8.647143 ACAAATCCTGTTTTCAAAGTGTTATG 57.353 30.769 0.00 0.00 32.99 1.90
193 194 8.978539 GTCTAAATGGAAAACAAGGAACAAATC 58.021 33.333 0.00 0.00 0.00 2.17
194 195 7.931407 GGTCTAAATGGAAAACAAGGAACAAAT 59.069 33.333 0.00 0.00 0.00 2.32
195 196 7.093289 TGGTCTAAATGGAAAACAAGGAACAAA 60.093 33.333 0.00 0.00 0.00 2.83
196 197 6.381420 TGGTCTAAATGGAAAACAAGGAACAA 59.619 34.615 0.00 0.00 0.00 2.83
197 198 5.894393 TGGTCTAAATGGAAAACAAGGAACA 59.106 36.000 0.00 0.00 0.00 3.18
198 199 6.183360 TGTGGTCTAAATGGAAAACAAGGAAC 60.183 38.462 0.00 0.00 0.00 3.62
199 200 5.894393 TGTGGTCTAAATGGAAAACAAGGAA 59.106 36.000 0.00 0.00 0.00 3.36
200 201 5.450453 TGTGGTCTAAATGGAAAACAAGGA 58.550 37.500 0.00 0.00 0.00 3.36
201 202 5.782893 TGTGGTCTAAATGGAAAACAAGG 57.217 39.130 0.00 0.00 0.00 3.61
202 203 7.013274 TCTCTTGTGGTCTAAATGGAAAACAAG 59.987 37.037 12.68 12.68 39.56 3.16
203 204 6.831353 TCTCTTGTGGTCTAAATGGAAAACAA 59.169 34.615 0.00 0.00 0.00 2.83
204 205 6.361433 TCTCTTGTGGTCTAAATGGAAAACA 58.639 36.000 0.00 0.00 0.00 2.83
205 206 6.568653 GCTCTCTTGTGGTCTAAATGGAAAAC 60.569 42.308 0.00 0.00 0.00 2.43
206 207 5.473504 GCTCTCTTGTGGTCTAAATGGAAAA 59.526 40.000 0.00 0.00 0.00 2.29
207 208 5.003804 GCTCTCTTGTGGTCTAAATGGAAA 58.996 41.667 0.00 0.00 0.00 3.13
208 209 4.041567 TGCTCTCTTGTGGTCTAAATGGAA 59.958 41.667 0.00 0.00 0.00 3.53
209 210 3.582647 TGCTCTCTTGTGGTCTAAATGGA 59.417 43.478 0.00 0.00 0.00 3.41
210 211 3.937706 CTGCTCTCTTGTGGTCTAAATGG 59.062 47.826 0.00 0.00 0.00 3.16
211 212 4.573900 ACTGCTCTCTTGTGGTCTAAATG 58.426 43.478 0.00 0.00 0.00 2.32
212 213 4.899352 ACTGCTCTCTTGTGGTCTAAAT 57.101 40.909 0.00 0.00 0.00 1.40
213 214 4.833380 ACTACTGCTCTCTTGTGGTCTAAA 59.167 41.667 0.00 0.00 0.00 1.85
214 215 4.408276 ACTACTGCTCTCTTGTGGTCTAA 58.592 43.478 0.00 0.00 0.00 2.10
215 216 4.035612 ACTACTGCTCTCTTGTGGTCTA 57.964 45.455 0.00 0.00 0.00 2.59
216 217 2.883026 ACTACTGCTCTCTTGTGGTCT 58.117 47.619 0.00 0.00 0.00 3.85
217 218 3.119424 GGTACTACTGCTCTCTTGTGGTC 60.119 52.174 0.00 0.00 0.00 4.02
218 219 2.826725 GGTACTACTGCTCTCTTGTGGT 59.173 50.000 0.00 0.00 0.00 4.16
219 220 2.166664 GGGTACTACTGCTCTCTTGTGG 59.833 54.545 0.00 0.00 0.00 4.17
220 221 2.826128 TGGGTACTACTGCTCTCTTGTG 59.174 50.000 0.00 0.00 0.00 3.33
221 222 3.170991 TGGGTACTACTGCTCTCTTGT 57.829 47.619 0.00 0.00 0.00 3.16
222 223 4.744795 ATTGGGTACTACTGCTCTCTTG 57.255 45.455 0.00 0.00 0.00 3.02
223 224 6.869206 TTTATTGGGTACTACTGCTCTCTT 57.131 37.500 0.00 0.00 0.00 2.85
224 225 6.212791 TGTTTTATTGGGTACTACTGCTCTCT 59.787 38.462 0.00 0.00 0.00 3.10
225 226 6.403878 TGTTTTATTGGGTACTACTGCTCTC 58.596 40.000 0.00 0.00 0.00 3.20
226 227 6.368779 TGTTTTATTGGGTACTACTGCTCT 57.631 37.500 0.00 0.00 0.00 4.09
227 228 6.653740 AGTTGTTTTATTGGGTACTACTGCTC 59.346 38.462 0.00 0.00 0.00 4.26
228 229 6.540083 AGTTGTTTTATTGGGTACTACTGCT 58.460 36.000 0.00 0.00 0.00 4.24
229 230 6.812879 AGTTGTTTTATTGGGTACTACTGC 57.187 37.500 0.00 0.00 0.00 4.40
230 231 9.148104 GAGTAGTTGTTTTATTGGGTACTACTG 57.852 37.037 14.58 0.00 43.89 2.74
231 232 9.097946 AGAGTAGTTGTTTTATTGGGTACTACT 57.902 33.333 10.73 10.73 45.50 2.57
239 240 9.774742 GCAAAGATAGAGTAGTTGTTTTATTGG 57.225 33.333 0.00 0.00 0.00 3.16
274 275 3.243234 CCGTGCTAGATCTGGTTGTCTAG 60.243 52.174 5.18 5.31 44.27 2.43
275 276 2.688446 CCGTGCTAGATCTGGTTGTCTA 59.312 50.000 5.18 0.00 0.00 2.59
276 277 1.478510 CCGTGCTAGATCTGGTTGTCT 59.521 52.381 5.18 0.00 0.00 3.41
277 278 1.471676 CCCGTGCTAGATCTGGTTGTC 60.472 57.143 5.18 0.00 0.00 3.18
278 279 0.537188 CCCGTGCTAGATCTGGTTGT 59.463 55.000 5.18 0.00 0.00 3.32
279 280 0.537188 ACCCGTGCTAGATCTGGTTG 59.463 55.000 5.18 0.00 0.00 3.77
280 281 0.824759 GACCCGTGCTAGATCTGGTT 59.175 55.000 5.18 0.00 0.00 3.67
281 282 1.384989 CGACCCGTGCTAGATCTGGT 61.385 60.000 5.18 2.23 0.00 4.00
282 283 1.101635 TCGACCCGTGCTAGATCTGG 61.102 60.000 5.18 2.94 0.00 3.86
283 284 0.309302 CTCGACCCGTGCTAGATCTG 59.691 60.000 5.18 0.00 0.00 2.90
284 285 0.180642 TCTCGACCCGTGCTAGATCT 59.819 55.000 0.00 0.00 0.00 2.75
285 286 1.022735 TTCTCGACCCGTGCTAGATC 58.977 55.000 0.00 0.00 0.00 2.75
286 287 1.471119 TTTCTCGACCCGTGCTAGAT 58.529 50.000 0.00 0.00 0.00 1.98
287 288 1.201647 CTTTTCTCGACCCGTGCTAGA 59.798 52.381 0.00 0.00 0.00 2.43
288 289 1.201647 TCTTTTCTCGACCCGTGCTAG 59.798 52.381 0.00 0.00 0.00 3.42
289 290 1.068055 GTCTTTTCTCGACCCGTGCTA 60.068 52.381 0.00 0.00 0.00 3.49
290 291 0.319641 GTCTTTTCTCGACCCGTGCT 60.320 55.000 0.00 0.00 0.00 4.40
291 292 0.599204 TGTCTTTTCTCGACCCGTGC 60.599 55.000 0.00 0.00 0.00 5.34
292 293 2.080286 ATGTCTTTTCTCGACCCGTG 57.920 50.000 0.00 0.00 0.00 4.94
293 294 2.413837 CAATGTCTTTTCTCGACCCGT 58.586 47.619 0.00 0.00 0.00 5.28
294 295 1.732259 CCAATGTCTTTTCTCGACCCG 59.268 52.381 0.00 0.00 0.00 5.28
295 296 3.003480 CTCCAATGTCTTTTCTCGACCC 58.997 50.000 0.00 0.00 0.00 4.46
296 297 2.416893 GCTCCAATGTCTTTTCTCGACC 59.583 50.000 0.00 0.00 0.00 4.79
297 298 3.330267 AGCTCCAATGTCTTTTCTCGAC 58.670 45.455 0.00 0.00 0.00 4.20
298 299 3.259374 AGAGCTCCAATGTCTTTTCTCGA 59.741 43.478 10.93 0.00 0.00 4.04
299 300 3.594134 AGAGCTCCAATGTCTTTTCTCG 58.406 45.455 10.93 0.00 0.00 4.04
300 301 4.630940 CAGAGAGCTCCAATGTCTTTTCTC 59.369 45.833 10.93 0.00 0.00 2.87
301 302 4.565236 CCAGAGAGCTCCAATGTCTTTTCT 60.565 45.833 10.93 0.00 0.00 2.52
302 303 3.688673 CCAGAGAGCTCCAATGTCTTTTC 59.311 47.826 10.93 0.00 0.00 2.29
303 304 3.073650 ACCAGAGAGCTCCAATGTCTTTT 59.926 43.478 10.93 0.00 0.00 2.27
304 305 2.641815 ACCAGAGAGCTCCAATGTCTTT 59.358 45.455 10.93 0.00 0.00 2.52
305 306 2.264455 ACCAGAGAGCTCCAATGTCTT 58.736 47.619 10.93 0.00 0.00 3.01
306 307 1.949799 ACCAGAGAGCTCCAATGTCT 58.050 50.000 10.93 3.05 0.00 3.41
307 308 2.777832 AACCAGAGAGCTCCAATGTC 57.222 50.000 10.93 0.27 0.00 3.06
308 309 2.290577 GGAAACCAGAGAGCTCCAATGT 60.291 50.000 10.93 0.00 0.00 2.71
309 310 2.026449 AGGAAACCAGAGAGCTCCAATG 60.026 50.000 10.93 6.77 0.00 2.82
310 311 2.273619 AGGAAACCAGAGAGCTCCAAT 58.726 47.619 10.93 0.00 0.00 3.16
311 312 1.734655 AGGAAACCAGAGAGCTCCAA 58.265 50.000 10.93 0.00 0.00 3.53
312 313 2.043115 TCTAGGAAACCAGAGAGCTCCA 59.957 50.000 10.93 0.00 0.00 3.86
313 314 2.693074 CTCTAGGAAACCAGAGAGCTCC 59.307 54.545 10.93 1.70 40.68 4.70
316 317 2.595124 GCTCTAGGAAACCAGAGAGC 57.405 55.000 20.50 20.50 46.64 4.09
317 318 2.828520 TGTGCTCTAGGAAACCAGAGAG 59.171 50.000 15.73 14.12 40.68 3.20
318 319 2.563179 GTGTGCTCTAGGAAACCAGAGA 59.437 50.000 15.73 6.77 40.68 3.10
319 320 2.354203 GGTGTGCTCTAGGAAACCAGAG 60.354 54.545 5.99 0.00 42.66 3.35
320 321 1.623811 GGTGTGCTCTAGGAAACCAGA 59.376 52.381 5.99 0.00 42.66 3.86
321 322 1.339151 GGGTGTGCTCTAGGAAACCAG 60.339 57.143 12.37 0.00 44.68 4.00
322 323 0.690762 GGGTGTGCTCTAGGAAACCA 59.309 55.000 12.37 0.00 44.68 3.67
323 324 0.035343 GGGGTGTGCTCTAGGAAACC 60.035 60.000 2.29 2.29 42.43 3.27
324 325 0.690762 TGGGGTGTGCTCTAGGAAAC 59.309 55.000 0.00 0.00 0.00 2.78
325 326 0.690762 GTGGGGTGTGCTCTAGGAAA 59.309 55.000 0.00 0.00 0.00 3.13
326 327 0.472925 TGTGGGGTGTGCTCTAGGAA 60.473 55.000 0.00 0.00 0.00 3.36
327 328 0.472925 TTGTGGGGTGTGCTCTAGGA 60.473 55.000 0.00 0.00 0.00 2.94
328 329 0.620556 ATTGTGGGGTGTGCTCTAGG 59.379 55.000 0.00 0.00 0.00 3.02
329 330 3.845781 ATATTGTGGGGTGTGCTCTAG 57.154 47.619 0.00 0.00 0.00 2.43
330 331 3.118038 GGAATATTGTGGGGTGTGCTCTA 60.118 47.826 0.00 0.00 0.00 2.43
331 332 2.357154 GGAATATTGTGGGGTGTGCTCT 60.357 50.000 0.00 0.00 0.00 4.09
332 333 2.024414 GGAATATTGTGGGGTGTGCTC 58.976 52.381 0.00 0.00 0.00 4.26
333 334 1.357420 TGGAATATTGTGGGGTGTGCT 59.643 47.619 0.00 0.00 0.00 4.40
334 335 1.476488 GTGGAATATTGTGGGGTGTGC 59.524 52.381 0.00 0.00 0.00 4.57
335 336 2.754552 CTGTGGAATATTGTGGGGTGTG 59.245 50.000 0.00 0.00 0.00 3.82
336 337 2.291540 CCTGTGGAATATTGTGGGGTGT 60.292 50.000 0.00 0.00 0.00 4.16
337 338 2.025416 TCCTGTGGAATATTGTGGGGTG 60.025 50.000 0.00 0.00 0.00 4.61
338 339 2.283834 TCCTGTGGAATATTGTGGGGT 58.716 47.619 0.00 0.00 0.00 4.95
339 340 3.023832 GTTCCTGTGGAATATTGTGGGG 58.976 50.000 2.17 0.00 44.04 4.96
340 341 3.968265 AGTTCCTGTGGAATATTGTGGG 58.032 45.455 2.17 0.00 44.04 4.61
341 342 5.066505 GCTAAGTTCCTGTGGAATATTGTGG 59.933 44.000 2.17 0.00 44.04 4.17
342 343 5.882557 AGCTAAGTTCCTGTGGAATATTGTG 59.117 40.000 2.17 1.88 44.04 3.33
343 344 6.067217 AGCTAAGTTCCTGTGGAATATTGT 57.933 37.500 2.17 0.00 44.04 2.71
344 345 8.506168 TTTAGCTAAGTTCCTGTGGAATATTG 57.494 34.615 6.24 0.00 44.04 1.90
345 346 8.329502 ACTTTAGCTAAGTTCCTGTGGAATATT 58.670 33.333 6.24 4.19 44.73 1.28
346 347 7.862675 ACTTTAGCTAAGTTCCTGTGGAATAT 58.137 34.615 6.24 0.00 44.73 1.28
347 348 7.253905 ACTTTAGCTAAGTTCCTGTGGAATA 57.746 36.000 6.24 0.00 44.73 1.75
348 349 6.128138 ACTTTAGCTAAGTTCCTGTGGAAT 57.872 37.500 6.24 0.00 44.73 3.01
349 350 5.548406 GACTTTAGCTAAGTTCCTGTGGAA 58.452 41.667 6.24 0.00 47.00 3.53
350 351 4.321750 CGACTTTAGCTAAGTTCCTGTGGA 60.322 45.833 6.24 0.00 47.00 4.02
351 352 3.927142 CGACTTTAGCTAAGTTCCTGTGG 59.073 47.826 6.24 0.00 47.00 4.17
352 353 4.806330 TCGACTTTAGCTAAGTTCCTGTG 58.194 43.478 6.24 0.00 47.00 3.66
353 354 5.464030 TTCGACTTTAGCTAAGTTCCTGT 57.536 39.130 6.24 0.97 47.00 4.00
354 355 6.780706 TTTTCGACTTTAGCTAAGTTCCTG 57.219 37.500 6.24 0.00 47.00 3.86
355 356 9.498176 TTTATTTTCGACTTTAGCTAAGTTCCT 57.502 29.630 6.24 0.00 47.00 3.36
363 364 7.702348 GCATCCAATTTATTTTCGACTTTAGCT 59.298 33.333 0.00 0.00 0.00 3.32
364 365 7.043391 GGCATCCAATTTATTTTCGACTTTAGC 60.043 37.037 0.00 0.00 0.00 3.09
365 366 8.190784 AGGCATCCAATTTATTTTCGACTTTAG 58.809 33.333 0.00 0.00 0.00 1.85
366 367 8.062065 AGGCATCCAATTTATTTTCGACTTTA 57.938 30.769 0.00 0.00 0.00 1.85
367 368 6.935167 AGGCATCCAATTTATTTTCGACTTT 58.065 32.000 0.00 0.00 0.00 2.66
368 369 6.530019 AGGCATCCAATTTATTTTCGACTT 57.470 33.333 0.00 0.00 0.00 3.01
369 370 6.530019 AAGGCATCCAATTTATTTTCGACT 57.470 33.333 0.00 0.00 0.00 4.18
370 371 8.755018 CAATAAGGCATCCAATTTATTTTCGAC 58.245 33.333 0.00 0.00 0.00 4.20
371 372 7.925483 CCAATAAGGCATCCAATTTATTTTCGA 59.075 33.333 0.00 0.00 0.00 3.71
372 373 7.710475 ACCAATAAGGCATCCAATTTATTTTCG 59.290 33.333 0.00 0.00 43.14 3.46
373 374 8.829612 CACCAATAAGGCATCCAATTTATTTTC 58.170 33.333 0.00 0.00 43.14 2.29
374 375 7.774625 CCACCAATAAGGCATCCAATTTATTTT 59.225 33.333 0.00 0.00 43.14 1.82
375 376 7.281841 CCACCAATAAGGCATCCAATTTATTT 58.718 34.615 0.00 0.00 43.14 1.40
376 377 6.183361 CCCACCAATAAGGCATCCAATTTATT 60.183 38.462 0.00 0.00 43.14 1.40
377 378 5.307716 CCCACCAATAAGGCATCCAATTTAT 59.692 40.000 0.00 0.00 43.14 1.40
378 379 4.653341 CCCACCAATAAGGCATCCAATTTA 59.347 41.667 0.00 0.00 43.14 1.40
379 380 3.455543 CCCACCAATAAGGCATCCAATTT 59.544 43.478 0.00 0.00 43.14 1.82
380 381 3.040477 CCCACCAATAAGGCATCCAATT 58.960 45.455 0.00 0.00 43.14 2.32
381 382 2.023113 ACCCACCAATAAGGCATCCAAT 60.023 45.455 0.00 0.00 43.14 3.16
382 383 1.360852 ACCCACCAATAAGGCATCCAA 59.639 47.619 0.00 0.00 43.14 3.53
383 384 1.006813 ACCCACCAATAAGGCATCCA 58.993 50.000 0.00 0.00 43.14 3.41
384 385 1.064017 TCACCCACCAATAAGGCATCC 60.064 52.381 0.00 0.00 43.14 3.51
385 386 2.435372 TCACCCACCAATAAGGCATC 57.565 50.000 0.00 0.00 43.14 3.91
386 387 2.917713 TTCACCCACCAATAAGGCAT 57.082 45.000 0.00 0.00 43.14 4.40
387 388 2.685106 TTTCACCCACCAATAAGGCA 57.315 45.000 0.00 0.00 43.14 4.75
388 389 2.897326 ACTTTTCACCCACCAATAAGGC 59.103 45.455 0.00 0.00 43.14 4.35
389 390 5.545063 AAACTTTTCACCCACCAATAAGG 57.455 39.130 0.00 0.00 45.67 2.69
390 391 7.519032 TCTAAACTTTTCACCCACCAATAAG 57.481 36.000 0.00 0.00 0.00 1.73
391 392 7.899648 TTCTAAACTTTTCACCCACCAATAA 57.100 32.000 0.00 0.00 0.00 1.40
396 397 5.303333 TGGATTTCTAAACTTTTCACCCACC 59.697 40.000 0.00 0.00 0.00 4.61
438 440 5.222130 ACAGGAGAATGTTTGTATGGTCCTT 60.222 40.000 0.00 0.00 30.51 3.36
442 444 8.650143 AAATTACAGGAGAATGTTTGTATGGT 57.350 30.769 0.00 0.00 34.56 3.55
458 460 8.789881 TTTACGTTGTGATTCAAAATTACAGG 57.210 30.769 0.00 0.00 37.81 4.00
460 462 8.734933 CGTTTTACGTTGTGATTCAAAATTACA 58.265 29.630 0.00 0.00 37.81 2.41
461 463 8.945930 TCGTTTTACGTTGTGATTCAAAATTAC 58.054 29.630 0.00 0.00 43.14 1.89
462 464 9.499585 TTCGTTTTACGTTGTGATTCAAAATTA 57.500 25.926 0.00 0.00 43.14 1.40
482 487 3.675775 CGCCCATGGATTCAAATTCGTTT 60.676 43.478 15.22 0.00 0.00 3.60
485 490 1.269206 CCGCCCATGGATTCAAATTCG 60.269 52.381 15.22 2.26 0.00 3.34
490 495 2.278404 CCCCGCCCATGGATTCAA 59.722 61.111 15.22 0.00 0.00 2.69
552 558 1.720852 GTTTGACATTGTTGGCGCATC 59.279 47.619 10.83 0.00 31.31 3.91
764 782 4.424566 GTAGGTCAACGCGGGCGA 62.425 66.667 20.98 0.00 42.83 5.54
779 797 2.967397 CGCCTTCGGTGGTGAGTA 59.033 61.111 2.69 0.00 39.82 2.59
852 877 0.179129 GATGCCTTTCAACGCCATGG 60.179 55.000 7.63 7.63 0.00 3.66
884 909 2.489802 GGGGGATGGGAGATGCTAAAAG 60.490 54.545 0.00 0.00 0.00 2.27
906 931 2.801631 GGAGGTGATGGGAGGCGAG 61.802 68.421 0.00 0.00 0.00 5.03
929 954 1.377202 GGCGGTGATGCTTCTTCCA 60.377 57.895 0.88 0.00 34.52 3.53
930 955 2.115291 GGGCGGTGATGCTTCTTCC 61.115 63.158 0.88 3.33 34.52 3.46
931 956 1.078143 AGGGCGGTGATGCTTCTTC 60.078 57.895 0.88 0.00 34.52 2.87
932 957 1.377725 CAGGGCGGTGATGCTTCTT 60.378 57.895 0.88 0.00 34.52 2.52
933 958 2.270205 CAGGGCGGTGATGCTTCT 59.730 61.111 0.88 0.00 34.52 2.85
940 971 0.960364 GAAGAAATGCAGGGCGGTGA 60.960 55.000 0.00 0.00 0.00 4.02
942 973 1.678970 GGAAGAAATGCAGGGCGGT 60.679 57.895 0.00 0.00 0.00 5.68
1223 1722 1.002251 GACACTACAGCTAGCGCCTAG 60.002 57.143 9.55 11.30 37.16 3.02
1225 1724 0.965866 TGACACTACAGCTAGCGCCT 60.966 55.000 9.55 0.00 36.60 5.52
1226 1725 0.802607 GTGACACTACAGCTAGCGCC 60.803 60.000 9.55 0.00 36.60 6.53
1234 1733 5.384063 AATCTGACAGAGTGACACTACAG 57.616 43.478 8.41 14.63 0.00 2.74
1235 1734 5.562890 CGAAATCTGACAGAGTGACACTACA 60.563 44.000 8.41 6.15 0.00 2.74
1236 1735 4.854291 CGAAATCTGACAGAGTGACACTAC 59.146 45.833 8.41 2.61 0.00 2.73
1237 1736 4.519350 ACGAAATCTGACAGAGTGACACTA 59.481 41.667 8.41 0.00 0.00 2.74
1238 1737 3.319405 ACGAAATCTGACAGAGTGACACT 59.681 43.478 8.12 8.12 0.00 3.55
1239 1738 3.643763 ACGAAATCTGACAGAGTGACAC 58.356 45.455 11.52 0.00 0.00 3.67
1253 1752 4.749099 CCATCCATCTCTGAAGACGAAATC 59.251 45.833 0.00 0.00 33.32 2.17
1281 1796 1.789464 CAAAGCAGTCAGTCAGTCGAC 59.211 52.381 7.70 7.70 42.95 4.20
1287 1802 1.405105 GCCAAACAAAGCAGTCAGTCA 59.595 47.619 0.00 0.00 0.00 3.41
1295 1810 1.329171 ACAGCCTGCCAAACAAAGCA 61.329 50.000 0.00 0.00 37.46 3.91
1297 1812 0.318107 CGACAGCCTGCCAAACAAAG 60.318 55.000 0.00 0.00 0.00 2.77
1300 1815 1.597854 CTCGACAGCCTGCCAAACA 60.598 57.895 0.00 0.00 0.00 2.83
1305 1820 2.125350 CTTCCTCGACAGCCTGCC 60.125 66.667 0.00 0.00 0.00 4.85
1471 1999 1.015109 CATGAGTGAGATGCCAGCAC 58.985 55.000 0.00 0.00 0.00 4.40
1491 2019 9.010029 AATTAACAAGTTGATTACCTGGTACAG 57.990 33.333 10.54 0.00 40.23 2.74
1528 2056 6.262273 TGAAGTTACTTCAGAATGGTTCAACC 59.738 38.462 22.16 0.00 44.27 3.77
1578 2109 2.946990 CAAGCACCACATCTCATATGCA 59.053 45.455 0.00 0.00 35.51 3.96
1686 2229 5.619625 AGCTCTTCTGTTGAAATTACAGC 57.380 39.130 2.49 0.00 42.12 4.40
1687 2230 8.087982 TGTTAGCTCTTCTGTTGAAATTACAG 57.912 34.615 0.00 1.08 43.41 2.74
1688 2231 8.506437 CATGTTAGCTCTTCTGTTGAAATTACA 58.494 33.333 0.00 0.00 0.00 2.41
1700 2243 5.489792 TCAACTTCCATGTTAGCTCTTCT 57.510 39.130 0.00 0.00 0.00 2.85
1706 2249 6.150140 AGACTTTGATCAACTTCCATGTTAGC 59.850 38.462 7.89 0.00 0.00 3.09
1709 2252 5.242393 CCAGACTTTGATCAACTTCCATGTT 59.758 40.000 7.89 0.00 0.00 2.71
1788 2331 3.019564 GGAGTGCACATTTAAGCAGGAT 58.980 45.455 21.04 0.00 42.14 3.24
1806 2349 8.138074 TCGTAGAAATCAATTCAGACTATGGAG 58.862 37.037 0.00 0.00 40.72 3.86
1856 2402 5.180810 ACAAAAGGGGAATAGAGAAGGTC 57.819 43.478 0.00 0.00 0.00 3.85
1864 2410 5.334879 CGTGACAGAAACAAAAGGGGAATAG 60.335 44.000 0.00 0.00 0.00 1.73
1866 2412 3.317993 CGTGACAGAAACAAAAGGGGAAT 59.682 43.478 0.00 0.00 0.00 3.01
1883 2429 5.459110 TGTACTTCAAACTGAAACGTGAC 57.541 39.130 0.00 0.00 35.73 3.67
1931 2478 7.566868 GCCGTTAAAATGTTTGTCATGTTCTTC 60.567 37.037 0.00 0.00 35.75 2.87
1959 2506 7.554959 TCCTGAAAACATATATCTCCCCTAC 57.445 40.000 0.00 0.00 0.00 3.18
2056 2629 2.368875 AGAACAGGTGGGTGTAGTGAAG 59.631 50.000 0.00 0.00 0.00 3.02
2061 2634 3.833070 ACTCTTAGAACAGGTGGGTGTAG 59.167 47.826 0.00 0.00 0.00 2.74
2065 2638 2.690840 ACACTCTTAGAACAGGTGGGT 58.309 47.619 4.74 0.00 32.88 4.51
2068 2641 5.175126 CGTTGTTACACTCTTAGAACAGGTG 59.825 44.000 0.00 0.00 33.60 4.00
2076 2649 4.916249 GGTCTGTCGTTGTTACACTCTTAG 59.084 45.833 0.00 0.00 0.00 2.18
2090 2663 1.806542 GCAATCATGTTGGTCTGTCGT 59.193 47.619 9.19 0.00 0.00 4.34
2091 2664 2.079158 AGCAATCATGTTGGTCTGTCG 58.921 47.619 6.83 0.00 0.00 4.35
2092 2665 3.076621 TCAGCAATCATGTTGGTCTGTC 58.923 45.455 8.97 0.00 38.23 3.51
2118 2691 3.471680 AGAAACAGAGAGAAAGTGCACC 58.528 45.455 14.63 0.00 0.00 5.01
2161 2734 0.941463 GATCTGTCATACCGCCGCTG 60.941 60.000 0.00 0.00 0.00 5.18
2164 2737 2.128035 GAAAGATCTGTCATACCGCCG 58.872 52.381 8.12 0.00 0.00 6.46
2192 2765 0.389556 TGCCACGCGTAACCGATTAA 60.390 50.000 13.44 0.00 35.63 1.40
2204 2777 1.391144 GCAATTCAAAATCTGCCACGC 59.609 47.619 0.00 0.00 0.00 5.34
2272 2852 0.179225 CTTTATGTGTGCGTCCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
2274 2854 1.425412 GTCTTTATGTGTGCGTCCGT 58.575 50.000 0.00 0.00 0.00 4.69
2277 2857 0.094730 GGCGTCTTTATGTGTGCGTC 59.905 55.000 0.00 0.00 0.00 5.19
2281 2861 0.035439 AGGGGGCGTCTTTATGTGTG 60.035 55.000 0.00 0.00 0.00 3.82
2284 2864 2.574824 ACTAAAGGGGGCGTCTTTATGT 59.425 45.455 10.04 8.37 36.49 2.29
2295 2875 4.521639 GTCAAGGTTAAACACTAAAGGGGG 59.478 45.833 0.00 0.00 0.00 5.40
2527 3255 5.818136 TTGCTTTTATGTATGGCTGAGAC 57.182 39.130 0.00 0.00 0.00 3.36
2660 3389 2.771372 TGCATGATAACTACTGCTGGGA 59.229 45.455 0.00 0.00 35.66 4.37
2829 3558 7.385752 GCAGTCTTTCATTTTTCCATTTCATCA 59.614 33.333 0.00 0.00 0.00 3.07
2846 3575 3.243907 ACACAGTACTGGAGCAGTCTTTC 60.244 47.826 26.12 0.00 41.21 2.62
2852 3581 0.247736 GGGACACAGTACTGGAGCAG 59.752 60.000 26.12 12.63 37.52 4.24
3244 4002 5.221126 CCAACAAGACTGAAAGGGAGAAAAG 60.221 44.000 0.00 0.00 39.30 2.27
3253 4012 3.209410 AGTGAGCCAACAAGACTGAAAG 58.791 45.455 0.00 0.00 42.29 2.62
3296 4055 2.857186 TGAATAGCAAGACACCAGCA 57.143 45.000 0.00 0.00 0.00 4.41
3317 4076 6.153680 ACAAATTTTCCACACTAACAGGAACA 59.846 34.615 0.00 0.00 40.88 3.18
3320 4079 6.378564 TGAACAAATTTTCCACACTAACAGGA 59.621 34.615 0.00 0.00 0.00 3.86
3329 4088 6.403866 ACTATGCTGAACAAATTTTCCACA 57.596 33.333 0.00 0.00 0.00 4.17
3356 4115 6.653320 GTGGTGATGAAACAGATTACTTACCA 59.347 38.462 0.00 0.00 0.00 3.25
3360 4119 5.707298 CCAGTGGTGATGAAACAGATTACTT 59.293 40.000 0.00 0.00 0.00 2.24
3365 4124 2.376518 ACCCAGTGGTGATGAAACAGAT 59.623 45.455 8.74 0.00 45.58 2.90
3367 4126 2.276732 ACCCAGTGGTGATGAAACAG 57.723 50.000 8.74 0.00 45.58 3.16
3378 4137 2.424601 CAGCATGTTCATAACCCAGTGG 59.575 50.000 0.63 0.63 37.80 4.00
3379 4138 2.159338 GCAGCATGTTCATAACCCAGTG 60.159 50.000 0.00 0.00 39.31 3.66
3380 4139 2.094675 GCAGCATGTTCATAACCCAGT 58.905 47.619 0.00 0.00 39.31 4.00
3381 4140 1.406539 GGCAGCATGTTCATAACCCAG 59.593 52.381 0.00 0.00 39.31 4.45
3383 4142 1.767759 AGGCAGCATGTTCATAACCC 58.232 50.000 0.00 0.00 39.31 4.11
3385 4144 2.165030 AGCAAGGCAGCATGTTCATAAC 59.835 45.455 4.78 0.00 39.31 1.89
3386 4145 2.449464 AGCAAGGCAGCATGTTCATAA 58.551 42.857 4.78 0.00 39.31 1.90
3388 4147 1.747355 GTAGCAAGGCAGCATGTTCAT 59.253 47.619 4.78 0.00 39.31 2.57
3389 4148 1.167851 GTAGCAAGGCAGCATGTTCA 58.832 50.000 4.78 0.00 39.31 3.18
3390 4149 0.453390 GGTAGCAAGGCAGCATGTTC 59.547 55.000 4.78 0.00 39.31 3.18
3391 4150 0.967380 GGGTAGCAAGGCAGCATGTT 60.967 55.000 4.78 0.00 39.31 2.71
3392 4151 1.379044 GGGTAGCAAGGCAGCATGT 60.379 57.895 4.78 0.00 39.31 3.21
3397 4158 1.765314 ACTCATAGGGTAGCAAGGCAG 59.235 52.381 0.00 0.00 0.00 4.85
3399 4160 1.811941 GCACTCATAGGGTAGCAAGGC 60.812 57.143 0.00 0.00 0.00 4.35
3403 4164 1.209504 GGTTGCACTCATAGGGTAGCA 59.790 52.381 0.00 0.00 0.00 3.49
3411 4172 2.236893 TGCATCAGAGGTTGCACTCATA 59.763 45.455 7.05 0.00 43.01 2.15
3413 4174 0.397564 TGCATCAGAGGTTGCACTCA 59.602 50.000 7.05 0.00 43.01 3.41
3418 4179 1.941294 CAGAGATGCATCAGAGGTTGC 59.059 52.381 27.81 7.01 39.62 4.17
3419 4180 3.263489 ACAGAGATGCATCAGAGGTTG 57.737 47.619 27.81 16.89 0.00 3.77
3420 4181 4.029520 AGTACAGAGATGCATCAGAGGTT 58.970 43.478 27.81 6.52 0.00 3.50
3421 4182 3.641046 AGTACAGAGATGCATCAGAGGT 58.359 45.455 27.81 20.25 0.00 3.85
3423 4184 5.259832 TCAAGTACAGAGATGCATCAGAG 57.740 43.478 27.81 17.93 0.00 3.35
3424 4185 5.597594 AGATCAAGTACAGAGATGCATCAGA 59.402 40.000 27.81 11.19 0.00 3.27
3425 4186 5.845103 AGATCAAGTACAGAGATGCATCAG 58.155 41.667 27.81 18.60 0.00 2.90
3427 4188 7.708322 TGTTAAGATCAAGTACAGAGATGCATC 59.292 37.037 19.37 19.37 0.00 3.91
3428 4189 7.559486 TGTTAAGATCAAGTACAGAGATGCAT 58.441 34.615 0.00 0.00 0.00 3.96
3429 4190 6.935167 TGTTAAGATCAAGTACAGAGATGCA 58.065 36.000 0.00 0.00 0.00 3.96
3430 4191 7.925483 AGATGTTAAGATCAAGTACAGAGATGC 59.075 37.037 14.46 0.00 0.00 3.91
3431 4192 9.247126 CAGATGTTAAGATCAAGTACAGAGATG 57.753 37.037 14.46 0.00 0.00 2.90
3432 4193 7.925483 GCAGATGTTAAGATCAAGTACAGAGAT 59.075 37.037 14.46 0.00 0.00 2.75
3433 4194 7.093771 TGCAGATGTTAAGATCAAGTACAGAGA 60.094 37.037 14.46 0.00 0.00 3.10
3434 4195 7.038048 TGCAGATGTTAAGATCAAGTACAGAG 58.962 38.462 14.46 0.00 0.00 3.35
3436 4197 6.257411 CCTGCAGATGTTAAGATCAAGTACAG 59.743 42.308 17.39 12.15 0.00 2.74
3438 4199 6.109359 ACCTGCAGATGTTAAGATCAAGTAC 58.891 40.000 17.39 0.67 0.00 2.73
3443 4205 5.426689 AAGACCTGCAGATGTTAAGATCA 57.573 39.130 17.39 0.00 0.00 2.92
3517 4279 1.934220 TTACAGTCGCGCCAGGAGAG 61.934 60.000 0.00 0.00 0.00 3.20
3545 4307 2.822255 GGCCTTGCCGTGCGAATA 60.822 61.111 0.00 0.00 39.62 1.75
3618 4384 4.764679 CAGAATGTTTCACGAAATCCCA 57.235 40.909 0.00 0.00 32.36 4.37
3653 4419 5.170021 TGCATGCAGTTATGAAACAAATCC 58.830 37.500 18.46 0.00 38.12 3.01
3698 4475 5.559770 TCAACAATTGGATAGAAGCTGTGA 58.440 37.500 10.83 0.00 0.00 3.58
3704 4481 6.766944 AGCAGAGATCAACAATTGGATAGAAG 59.233 38.462 10.83 0.00 0.00 2.85
3705 4482 6.656902 AGCAGAGATCAACAATTGGATAGAA 58.343 36.000 10.83 0.00 0.00 2.10
3745 4522 9.554395 CTTTTCCCTTTATTTTGTATGGTTGTT 57.446 29.630 0.00 0.00 0.00 2.83
3811 4592 0.695347 AACAGAGGAAGCTCTTGGGG 59.305 55.000 0.00 0.00 0.00 4.96
3924 4709 7.885922 TGGGACTGCTGATTTTAAACATAACTA 59.114 33.333 0.00 0.00 0.00 2.24
3925 4710 6.719370 TGGGACTGCTGATTTTAAACATAACT 59.281 34.615 0.00 0.00 0.00 2.24
3992 4778 8.097038 CAGTATGTCATATACCCATGTTAAGCT 58.903 37.037 0.00 0.00 0.00 3.74
4007 4793 5.893824 TCTCTCAAAGGCTCAGTATGTCATA 59.106 40.000 0.00 0.00 37.40 2.15
4010 4796 4.727507 TCTCTCAAAGGCTCAGTATGTC 57.272 45.455 0.00 0.00 37.40 3.06
4103 4898 3.004524 TGCATATATGTACACGCGGTGTA 59.995 43.478 12.47 13.87 45.56 2.90
4143 4942 5.527214 TCGATTTATTGCTGTAACTCCATGG 59.473 40.000 4.97 4.97 0.00 3.66
4202 5001 2.233922 AGGCTGAACTACATAAGCACGT 59.766 45.455 0.00 0.00 37.40 4.49
4203 5002 2.893637 AGGCTGAACTACATAAGCACG 58.106 47.619 0.00 0.00 37.40 5.34
4204 5003 4.938226 AGAAAGGCTGAACTACATAAGCAC 59.062 41.667 0.00 0.00 37.40 4.40
4205 5004 5.165961 AGAAAGGCTGAACTACATAAGCA 57.834 39.130 0.00 0.00 37.40 3.91
4207 5006 6.428385 CCAAGAAAGGCTGAACTACATAAG 57.572 41.667 0.00 0.00 0.00 1.73
4424 5234 3.432046 CCAAGAAGGAGAAGAGCATCCTC 60.432 52.174 0.00 0.00 45.39 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.