Multiple sequence alignment - TraesCS5A01G487100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G487100 chr5A 100.000 4019 0 0 1 4019 657489411 657493429 0.000000e+00 7422
1 TraesCS5A01G487100 chr5A 85.532 235 20 6 248 474 675839177 675838949 2.420000e-57 233
2 TraesCS5A01G487100 chr5D 87.674 4105 300 115 1 4019 529354373 529358357 0.000000e+00 4588
3 TraesCS5A01G487100 chr5D 85.096 208 22 5 275 474 28573936 28573730 1.890000e-48 204
4 TraesCS5A01G487100 chr5B 90.401 1271 84 18 1835 3098 668196328 668197567 0.000000e+00 1637
5 TraesCS5A01G487100 chr5B 87.050 888 60 25 3094 3959 668197646 668198500 0.000000e+00 952
6 TraesCS5A01G487100 chr5B 88.131 792 50 16 921 1679 668195485 668196265 0.000000e+00 902
7 TraesCS5A01G487100 chr5B 83.571 773 81 29 1 750 668194163 668194912 0.000000e+00 682
8 TraesCS5A01G487100 chr2A 84.394 487 33 26 3454 3916 282967036 282967503 4.770000e-119 438
9 TraesCS5A01G487100 chrUn 82.759 261 32 9 224 474 154750313 154750056 1.880000e-53 220
10 TraesCS5A01G487100 chr4D 77.518 427 54 26 82 474 149088349 149088767 6.760000e-53 219
11 TraesCS5A01G487100 chr2B 85.096 208 16 7 275 474 131904302 131904502 8.810000e-47 198
12 TraesCS5A01G487100 chr7A 85.279 197 20 5 286 474 636328331 636328526 1.140000e-45 195
13 TraesCS5A01G487100 chr1A 85.279 197 20 5 286 474 10194170 10194365 1.140000e-45 195
14 TraesCS5A01G487100 chr1A 85.279 197 20 5 286 474 260084482 260084677 1.140000e-45 195
15 TraesCS5A01G487100 chr6B 84.293 191 21 5 292 474 180392182 180391993 1.150000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G487100 chr5A 657489411 657493429 4018 False 7422.00 7422 100.00000 1 4019 1 chr5A.!!$F1 4018
1 TraesCS5A01G487100 chr5D 529354373 529358357 3984 False 4588.00 4588 87.67400 1 4019 1 chr5D.!!$F1 4018
2 TraesCS5A01G487100 chr5B 668194163 668198500 4337 False 1043.25 1637 87.28825 1 3959 4 chr5B.!!$F1 3958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 278 0.038526 AACAACAGCTACGGAGTCGG 60.039 55.0 0.00 0.00 43.93 4.79 F
270 281 0.243095 AACAGCTACGGAGTCGGTTC 59.757 55.0 8.79 2.17 43.93 3.62 F
1823 2356 0.322975 TGCCTTGAGCTGTCCTTCTC 59.677 55.0 0.00 0.00 44.23 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1441 1934 0.107214 GACCCATTGCTCCATTCGGA 60.107 55.0 0.00 0.00 39.79 4.55 R
2224 2761 0.248458 GCGTGTTGGTCACTTTGTGG 60.248 55.0 0.00 0.00 44.16 4.17 R
3776 4422 0.445043 CGGCTTAACGTTTACTGGCC 59.555 55.0 5.91 12.12 35.33 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.379059 TCAGGGAAGATCATTCTATTAAGCA 57.621 36.000 0.00 0.00 0.00 3.91
45 46 7.472334 AGCAGTTCAAAAATATCATTGTCCT 57.528 32.000 0.00 0.00 0.00 3.85
49 50 5.499139 TCAAAAATATCATTGTCCTCGGC 57.501 39.130 1.68 0.00 0.00 5.54
58 60 1.266178 TTGTCCTCGGCTCATCAAGA 58.734 50.000 0.00 0.00 0.00 3.02
64 66 2.275318 CTCGGCTCATCAAGAAGTTCC 58.725 52.381 0.00 0.00 0.00 3.62
65 67 1.902508 TCGGCTCATCAAGAAGTTCCT 59.097 47.619 0.00 0.00 0.00 3.36
66 68 3.096852 TCGGCTCATCAAGAAGTTCCTA 58.903 45.455 0.00 0.00 0.00 2.94
67 69 3.119101 TCGGCTCATCAAGAAGTTCCTAC 60.119 47.826 0.00 0.00 0.00 3.18
68 70 3.118956 CGGCTCATCAAGAAGTTCCTACT 60.119 47.826 0.00 0.00 35.68 2.57
69 71 4.438148 GGCTCATCAAGAAGTTCCTACTC 58.562 47.826 0.00 0.00 31.99 2.59
70 72 4.081420 GGCTCATCAAGAAGTTCCTACTCA 60.081 45.833 0.00 0.00 31.99 3.41
71 73 5.396213 GGCTCATCAAGAAGTTCCTACTCAT 60.396 44.000 0.00 0.00 31.99 2.90
80 82 3.362706 AGTTCCTACTCATAGTTGCCGA 58.637 45.455 0.00 0.00 0.00 5.54
103 105 0.974010 AGGGCATGGCAATCACTTGG 60.974 55.000 22.06 0.00 32.72 3.61
112 114 1.066605 GCAATCACTTGGCATAGCAGG 59.933 52.381 0.00 0.00 32.72 4.85
113 115 1.679680 CAATCACTTGGCATAGCAGGG 59.320 52.381 0.00 0.00 0.00 4.45
114 116 1.216064 ATCACTTGGCATAGCAGGGA 58.784 50.000 0.00 0.00 0.00 4.20
115 117 0.991146 TCACTTGGCATAGCAGGGAA 59.009 50.000 0.00 0.00 0.00 3.97
117 119 2.170166 CACTTGGCATAGCAGGGAAAA 58.830 47.619 0.00 0.00 0.00 2.29
118 120 2.762327 CACTTGGCATAGCAGGGAAAAT 59.238 45.455 0.00 0.00 0.00 1.82
119 121 2.762327 ACTTGGCATAGCAGGGAAAATG 59.238 45.455 0.00 0.00 0.00 2.32
120 122 2.530460 TGGCATAGCAGGGAAAATGT 57.470 45.000 0.00 0.00 0.00 2.71
122 124 2.102578 GGCATAGCAGGGAAAATGTGT 58.897 47.619 0.00 0.00 0.00 3.72
123 125 2.497273 GGCATAGCAGGGAAAATGTGTT 59.503 45.455 0.00 0.00 0.00 3.32
125 127 3.928375 GCATAGCAGGGAAAATGTGTTTG 59.072 43.478 0.00 0.00 0.00 2.93
149 153 5.618640 GCAAGGAAATCACTGAAGCAGTAAG 60.619 44.000 0.00 0.00 43.43 2.34
150 154 4.583871 AGGAAATCACTGAAGCAGTAAGG 58.416 43.478 0.00 0.00 43.43 2.69
167 171 3.525800 AAGGACATTAAACACCAGGCT 57.474 42.857 0.00 0.00 0.00 4.58
168 172 3.525800 AGGACATTAAACACCAGGCTT 57.474 42.857 0.00 0.00 0.00 4.35
169 173 4.650972 AGGACATTAAACACCAGGCTTA 57.349 40.909 0.00 0.00 0.00 3.09
170 174 5.193099 AGGACATTAAACACCAGGCTTAT 57.807 39.130 0.00 0.00 0.00 1.73
171 175 6.321821 AGGACATTAAACACCAGGCTTATA 57.678 37.500 0.00 0.00 0.00 0.98
172 176 6.727394 AGGACATTAAACACCAGGCTTATAA 58.273 36.000 0.00 0.00 0.00 0.98
173 177 6.828785 AGGACATTAAACACCAGGCTTATAAG 59.171 38.462 8.20 8.20 0.00 1.73
184 188 8.984855 ACACCAGGCTTATAAGTTATAACTGTA 58.015 33.333 18.70 11.85 39.66 2.74
206 217 8.357290 TGTAAAACTACATTAGGCTAGTCTGA 57.643 34.615 7.24 0.00 0.00 3.27
207 218 8.467598 TGTAAAACTACATTAGGCTAGTCTGAG 58.532 37.037 7.24 0.00 0.00 3.35
215 226 1.595993 GGCTAGTCTGAGACGCCACA 61.596 60.000 21.63 1.36 38.39 4.17
216 227 0.179150 GCTAGTCTGAGACGCCACAG 60.179 60.000 6.99 2.44 37.67 3.66
221 232 2.031012 TGAGACGCCACAGCAAGG 59.969 61.111 0.00 0.00 39.83 3.61
231 242 0.242825 CACAGCAAGGGCAGACAATG 59.757 55.000 0.00 0.00 44.61 2.82
232 243 0.896940 ACAGCAAGGGCAGACAATGG 60.897 55.000 0.00 0.00 44.61 3.16
239 250 4.672251 GCAGACAATGGCATCCCT 57.328 55.556 0.00 0.00 0.00 4.20
240 251 2.412605 GCAGACAATGGCATCCCTC 58.587 57.895 0.00 0.00 0.00 4.30
241 252 0.394762 GCAGACAATGGCATCCCTCA 60.395 55.000 0.00 0.00 0.00 3.86
243 254 2.662866 CAGACAATGGCATCCCTCAAT 58.337 47.619 0.00 0.00 0.00 2.57
244 255 2.361119 CAGACAATGGCATCCCTCAATG 59.639 50.000 0.00 0.00 0.00 2.82
245 256 2.024655 AGACAATGGCATCCCTCAATGT 60.025 45.455 0.00 0.00 0.00 2.71
246 257 3.202818 AGACAATGGCATCCCTCAATGTA 59.797 43.478 0.00 0.00 0.00 2.29
247 258 4.141088 AGACAATGGCATCCCTCAATGTAT 60.141 41.667 0.00 0.00 0.00 2.29
248 259 5.073554 AGACAATGGCATCCCTCAATGTATA 59.926 40.000 0.00 0.00 0.00 1.47
250 261 5.536161 ACAATGGCATCCCTCAATGTATAAC 59.464 40.000 0.00 0.00 0.00 1.89
251 262 4.787135 TGGCATCCCTCAATGTATAACA 57.213 40.909 0.00 0.00 0.00 2.41
252 263 5.122707 TGGCATCCCTCAATGTATAACAA 57.877 39.130 0.00 0.00 0.00 2.83
253 264 4.887071 TGGCATCCCTCAATGTATAACAAC 59.113 41.667 0.00 0.00 0.00 3.32
255 266 5.009010 GGCATCCCTCAATGTATAACAACAG 59.991 44.000 0.00 0.00 31.70 3.16
256 267 5.506317 GCATCCCTCAATGTATAACAACAGC 60.506 44.000 0.00 0.00 31.70 4.40
257 268 5.435686 TCCCTCAATGTATAACAACAGCT 57.564 39.130 0.00 0.00 31.70 4.24
258 269 6.553953 TCCCTCAATGTATAACAACAGCTA 57.446 37.500 0.00 0.00 31.70 3.32
259 270 6.346096 TCCCTCAATGTATAACAACAGCTAC 58.654 40.000 0.00 0.00 31.70 3.58
260 271 5.234329 CCCTCAATGTATAACAACAGCTACG 59.766 44.000 0.00 0.00 31.70 3.51
261 272 5.234329 CCTCAATGTATAACAACAGCTACGG 59.766 44.000 0.00 0.00 31.70 4.02
262 273 5.968254 TCAATGTATAACAACAGCTACGGA 58.032 37.500 0.00 0.00 31.70 4.69
263 274 6.040247 TCAATGTATAACAACAGCTACGGAG 58.960 40.000 0.00 0.00 31.70 4.63
264 275 5.593679 ATGTATAACAACAGCTACGGAGT 57.406 39.130 0.00 0.00 37.38 3.85
265 276 4.990257 TGTATAACAACAGCTACGGAGTC 58.010 43.478 0.00 0.00 43.93 3.36
266 277 2.624316 TAACAACAGCTACGGAGTCG 57.376 50.000 0.00 0.00 43.93 4.18
267 278 0.038526 AACAACAGCTACGGAGTCGG 60.039 55.000 0.00 0.00 43.93 4.79
268 279 1.177256 ACAACAGCTACGGAGTCGGT 61.177 55.000 8.53 8.53 43.93 4.69
269 280 0.038526 CAACAGCTACGGAGTCGGTT 60.039 55.000 8.79 0.00 43.93 4.44
270 281 0.243095 AACAGCTACGGAGTCGGTTC 59.757 55.000 8.79 2.17 43.93 3.62
271 282 0.608582 ACAGCTACGGAGTCGGTTCT 60.609 55.000 8.79 4.37 43.93 3.01
272 283 1.339438 ACAGCTACGGAGTCGGTTCTA 60.339 52.381 8.79 0.00 43.93 2.10
302 313 3.790152 TCAACCAGTGATCTGATCTCG 57.210 47.619 17.82 10.57 43.76 4.04
330 341 3.300032 CCCAGGTGGTAGTAGAGCA 57.700 57.895 0.00 0.00 0.00 4.26
331 342 1.568504 CCCAGGTGGTAGTAGAGCAA 58.431 55.000 0.00 0.00 37.28 3.91
333 344 1.134670 CCAGGTGGTAGTAGAGCAAGC 60.135 57.143 0.00 0.00 37.28 4.01
334 345 1.550524 CAGGTGGTAGTAGAGCAAGCA 59.449 52.381 0.00 0.00 37.28 3.91
335 346 1.827969 AGGTGGTAGTAGAGCAAGCAG 59.172 52.381 0.00 0.00 37.28 4.24
336 347 1.646189 GTGGTAGTAGAGCAAGCAGC 58.354 55.000 0.00 0.00 46.19 5.25
418 431 1.718757 GCCATCCCGAACATCTGCAC 61.719 60.000 0.00 0.00 0.00 4.57
506 530 2.556622 TGGAAAATCCGGAAGCAAAGAC 59.443 45.455 9.01 0.00 40.17 3.01
578 602 2.395690 CATTGTCGCGACGCCTTC 59.604 61.111 31.88 10.00 0.00 3.46
599 623 0.390866 CCTGCACAGACAGAATCGCT 60.391 55.000 0.00 0.00 40.25 4.93
662 687 2.683933 GGGAAGAGACGGGGAGCA 60.684 66.667 0.00 0.00 0.00 4.26
674 699 3.423154 GGAGCAAAGACGGCGGTG 61.423 66.667 13.24 4.75 36.08 4.94
689 714 1.912971 GGTGCTTACGGGGAAGGAT 59.087 57.895 0.00 0.00 0.00 3.24
698 723 1.689582 GGGGAAGGATGACCGGAGT 60.690 63.158 9.46 0.00 41.83 3.85
753 781 4.933064 GGTCGAGATGCCGCGGAG 62.933 72.222 33.48 12.00 36.25 4.63
784 812 4.940593 CTAGAGCAGCCGCGCCTC 62.941 72.222 0.00 1.49 45.49 4.70
802 1265 3.623453 GCCTCAATCTCTAGGGTTTTGCT 60.623 47.826 0.00 0.00 33.17 3.91
805 1268 5.495640 CTCAATCTCTAGGGTTTTGCTCTT 58.504 41.667 0.00 0.00 0.00 2.85
830 1294 1.093408 TTCTTGGAGGAGGAGGAGGA 58.907 55.000 0.00 0.00 0.00 3.71
835 1299 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
863 1327 1.869754 CGTCCTCATATGGGCTTCGTG 60.870 57.143 2.13 0.00 0.00 4.35
869 1333 0.541392 ATATGGGCTTCGTGCTGACA 59.459 50.000 3.58 2.14 42.39 3.58
872 1336 3.414700 GGCTTCGTGCTGACACCG 61.415 66.667 3.58 0.00 44.40 4.94
927 1396 4.636435 CCACGTTTCTGGGCCGGT 62.636 66.667 13.14 0.00 0.00 5.28
943 1412 0.956633 CGGTAGGTGATAAGCGGCTA 59.043 55.000 1.35 0.00 33.22 3.93
950 1419 6.092259 GGTAGGTGATAAGCGGCTATATTTTG 59.908 42.308 1.35 0.00 0.00 2.44
957 1426 8.462811 TGATAAGCGGCTATATTTTGTTTTTGA 58.537 29.630 1.35 0.00 0.00 2.69
993 1466 4.430765 TTCGTTCCCGAGCGGCTC 62.431 66.667 19.92 19.92 45.24 4.70
1421 1913 3.633065 GTCTCCTTCAAGGTAGTATCGCT 59.367 47.826 2.50 0.00 36.53 4.93
1437 1930 2.680251 TCGCTCCTAGTCTCTCCTCTA 58.320 52.381 0.00 0.00 0.00 2.43
1441 1934 2.979678 CTCCTAGTCTCTCCTCTAGCCT 59.020 54.545 0.00 0.00 34.18 4.58
1462 1956 0.744414 CGAATGGAGCAATGGGTCGT 60.744 55.000 0.00 0.00 42.46 4.34
1474 1968 2.267188 TGGGTCGTTCGTTTAGATCG 57.733 50.000 0.00 0.00 41.89 3.69
1535 2041 3.747388 CGTAATGTGCCATGGGGTATCTT 60.747 47.826 15.13 0.00 36.17 2.40
1547 2053 6.475504 CATGGGGTATCTTGATTGTGCTATA 58.524 40.000 0.00 0.00 0.00 1.31
1548 2054 6.702449 TGGGGTATCTTGATTGTGCTATAT 57.298 37.500 0.00 0.00 0.00 0.86
1549 2055 7.806680 TGGGGTATCTTGATTGTGCTATATA 57.193 36.000 0.00 0.00 0.00 0.86
1550 2056 8.392631 TGGGGTATCTTGATTGTGCTATATAT 57.607 34.615 0.00 0.00 0.00 0.86
1553 2059 9.319143 GGGTATCTTGATTGTGCTATATATGAC 57.681 37.037 0.00 0.00 0.00 3.06
1576 2082 2.811317 CCGCCGTGCAGAACTCTC 60.811 66.667 0.00 0.00 0.00 3.20
1580 2086 1.416813 GCCGTGCAGAACTCTCATCG 61.417 60.000 0.00 0.00 0.00 3.84
1585 2091 0.390340 GCAGAACTCTCATCGCCACA 60.390 55.000 0.00 0.00 0.00 4.17
1597 2106 4.980590 TCATCGCCACATAAATTTCACAC 58.019 39.130 0.00 0.00 0.00 3.82
1598 2107 3.840890 TCGCCACATAAATTTCACACC 57.159 42.857 0.00 0.00 0.00 4.16
1602 2111 4.658071 GCCACATAAATTTCACACCTACG 58.342 43.478 0.00 0.00 0.00 3.51
1605 2114 5.413213 CCACATAAATTTCACACCTACGGAA 59.587 40.000 0.00 0.00 0.00 4.30
1608 2117 6.487331 ACATAAATTTCACACCTACGGAACAA 59.513 34.615 0.00 0.00 0.00 2.83
1611 2120 4.822036 TTTCACACCTACGGAACAATTG 57.178 40.909 3.24 3.24 0.00 2.32
1621 2130 4.159377 ACGGAACAATTGTGCATAACAG 57.841 40.909 18.45 4.72 40.74 3.16
1632 2141 2.744202 GTGCATAACAGAACCTGTGAGG 59.256 50.000 0.00 0.00 44.62 3.86
1662 2171 3.689161 TGGCTATTGGTTGTGAATTCTCG 59.311 43.478 7.05 0.00 0.00 4.04
1663 2172 3.487544 GGCTATTGGTTGTGAATTCTCGC 60.488 47.826 7.05 0.68 0.00 5.03
1681 2190 2.251371 GGCGACACTTGCCGTTTC 59.749 61.111 0.00 0.00 43.70 2.78
1682 2191 2.539338 GGCGACACTTGCCGTTTCA 61.539 57.895 0.00 0.00 43.70 2.69
1697 2212 7.209471 TGCCGTTTCATTTTCAGTAACTAAT 57.791 32.000 0.00 0.00 0.00 1.73
1698 2213 7.653647 TGCCGTTTCATTTTCAGTAACTAATT 58.346 30.769 0.00 0.00 0.00 1.40
1699 2214 8.138712 TGCCGTTTCATTTTCAGTAACTAATTT 58.861 29.630 0.00 0.00 0.00 1.82
1700 2215 8.974408 GCCGTTTCATTTTCAGTAACTAATTTT 58.026 29.630 0.00 0.00 0.00 1.82
1727 2242 7.905604 TGTAGTCCTTGTTACTTGAATCATG 57.094 36.000 0.00 0.00 0.00 3.07
1748 2267 4.314121 TGCAATCATGTTAAACTTTGGGC 58.686 39.130 0.00 0.00 0.00 5.36
1768 2287 3.133721 GGCTAGTGAGATGTGAGGTGAAT 59.866 47.826 0.00 0.00 0.00 2.57
1774 2293 3.584406 TGAGATGTGAGGTGAATCCAACT 59.416 43.478 0.00 0.00 44.48 3.16
1776 2295 5.091261 AGATGTGAGGTGAATCCAACTAC 57.909 43.478 0.00 0.00 41.20 2.73
1777 2296 3.313012 TGTGAGGTGAATCCAACTACG 57.687 47.619 0.00 0.00 41.20 3.51
1778 2297 2.894765 TGTGAGGTGAATCCAACTACGA 59.105 45.455 0.00 0.00 41.20 3.43
1779 2298 3.513912 TGTGAGGTGAATCCAACTACGAT 59.486 43.478 0.00 0.00 41.20 3.73
1780 2299 4.707934 TGTGAGGTGAATCCAACTACGATA 59.292 41.667 0.00 0.00 41.20 2.92
1781 2300 5.163550 TGTGAGGTGAATCCAACTACGATAG 60.164 44.000 0.00 0.00 41.20 2.08
1782 2301 4.202121 TGAGGTGAATCCAACTACGATAGC 60.202 45.833 0.00 0.00 41.20 2.97
1784 2303 3.069729 GGTGAATCCAACTACGATAGCCT 59.930 47.826 0.00 0.00 36.17 4.58
1785 2304 4.051922 GTGAATCCAACTACGATAGCCTG 58.948 47.826 0.00 0.00 42.67 4.85
1796 2329 3.278574 ACGATAGCCTGCTTATTTGCAA 58.721 40.909 0.00 0.00 40.87 4.08
1797 2330 3.313526 ACGATAGCCTGCTTATTTGCAAG 59.686 43.478 0.00 0.00 40.87 4.01
1811 2344 3.689414 CAAGCCATGCTGCCTTGA 58.311 55.556 9.80 0.00 39.62 3.02
1812 2345 1.511305 CAAGCCATGCTGCCTTGAG 59.489 57.895 9.80 0.00 39.62 3.02
1813 2346 2.348888 AAGCCATGCTGCCTTGAGC 61.349 57.895 0.00 1.69 39.62 4.26
1814 2347 2.754658 GCCATGCTGCCTTGAGCT 60.755 61.111 0.00 0.00 44.23 4.09
1815 2348 3.064987 GCCATGCTGCCTTGAGCTG 62.065 63.158 0.00 0.00 44.23 4.24
1816 2349 1.677966 CCATGCTGCCTTGAGCTGT 60.678 57.895 0.00 0.00 44.23 4.40
1817 2350 1.654954 CCATGCTGCCTTGAGCTGTC 61.655 60.000 0.00 0.00 44.23 3.51
1818 2351 1.378250 ATGCTGCCTTGAGCTGTCC 60.378 57.895 0.00 0.00 44.23 4.02
1819 2352 1.849975 ATGCTGCCTTGAGCTGTCCT 61.850 55.000 0.00 0.00 44.23 3.85
1820 2353 1.303155 GCTGCCTTGAGCTGTCCTT 60.303 57.895 0.00 0.00 44.23 3.36
1821 2354 1.304509 GCTGCCTTGAGCTGTCCTTC 61.305 60.000 0.00 0.00 44.23 3.46
1822 2355 0.324285 CTGCCTTGAGCTGTCCTTCT 59.676 55.000 0.00 0.00 44.23 2.85
1823 2356 0.322975 TGCCTTGAGCTGTCCTTCTC 59.677 55.000 0.00 0.00 44.23 2.87
1824 2357 0.322975 GCCTTGAGCTGTCCTTCTCA 59.677 55.000 0.00 0.00 38.99 3.27
1825 2358 1.943507 GCCTTGAGCTGTCCTTCTCAC 60.944 57.143 0.00 0.00 38.87 3.51
1826 2359 1.345741 CCTTGAGCTGTCCTTCTCACA 59.654 52.381 0.00 0.00 38.87 3.58
1827 2360 2.224378 CCTTGAGCTGTCCTTCTCACAA 60.224 50.000 0.00 0.00 38.87 3.33
1828 2361 3.470709 CTTGAGCTGTCCTTCTCACAAA 58.529 45.455 0.00 0.00 38.87 2.83
1829 2362 3.777106 TGAGCTGTCCTTCTCACAAAT 57.223 42.857 0.00 0.00 34.69 2.32
1830 2363 4.890158 TGAGCTGTCCTTCTCACAAATA 57.110 40.909 0.00 0.00 34.69 1.40
1831 2364 5.426689 TGAGCTGTCCTTCTCACAAATAT 57.573 39.130 0.00 0.00 34.69 1.28
1832 2365 5.809001 TGAGCTGTCCTTCTCACAAATATT 58.191 37.500 0.00 0.00 34.69 1.28
1833 2366 5.877012 TGAGCTGTCCTTCTCACAAATATTC 59.123 40.000 0.00 0.00 34.69 1.75
1852 2385 9.638176 AAATATTCTCTGCAGATTTACAATCCT 57.362 29.630 18.63 0.63 0.00 3.24
1906 2439 5.888724 TGGTTTGATCAGTACCAAGTCAAAA 59.111 36.000 22.51 4.19 39.59 2.44
1936 2469 1.339151 CCTGGGCTGGTCTTTCTGTAC 60.339 57.143 0.00 0.00 0.00 2.90
1966 2499 7.031975 CCTTAAACAAGGAGCTTCATGATTTC 58.968 38.462 3.76 0.00 42.62 2.17
1978 2511 5.220815 GCTTCATGATTTCATCAGAGACACC 60.221 44.000 0.00 0.00 43.53 4.16
2005 2538 4.220602 GGTTGTTATGGTTTCATTGGAGCT 59.779 41.667 0.00 0.00 34.96 4.09
2017 2550 3.055094 TCATTGGAGCTACAAGAGGTTCC 60.055 47.826 18.11 0.00 35.50 3.62
2036 2569 2.304761 TCCATGTGGGTACTTCTCAACC 59.695 50.000 0.00 0.00 38.11 3.77
2044 2577 4.287766 GGTACTTCTCAACCCATTCACT 57.712 45.455 0.00 0.00 0.00 3.41
2074 2608 7.865707 TCTGTCTGAAACTTTATTTGCTCTTC 58.134 34.615 0.00 0.00 0.00 2.87
2083 2617 5.122396 ACTTTATTTGCTCTTCGCTTCGATT 59.878 36.000 0.00 0.00 40.11 3.34
2098 2632 5.219659 CGCTTCGATTTTCTTGTTCGAATTG 60.220 40.000 0.00 0.00 46.88 2.32
2104 2638 7.118535 TCGATTTTCTTGTTCGAATTGTCCATA 59.881 33.333 0.00 0.00 38.80 2.74
2105 2639 7.910162 CGATTTTCTTGTTCGAATTGTCCATAT 59.090 33.333 0.00 0.00 34.92 1.78
2148 2682 0.464554 GATAGCTTGCCACCCTGGAC 60.465 60.000 0.00 0.00 40.96 4.02
2153 2687 0.675633 CTTGCCACCCTGGACTTTTG 59.324 55.000 0.00 0.00 40.96 2.44
2162 2696 3.699538 ACCCTGGACTTTTGAAGTGTTTC 59.300 43.478 0.00 0.00 43.03 2.78
2163 2697 3.954258 CCCTGGACTTTTGAAGTGTTTCT 59.046 43.478 0.00 0.00 43.03 2.52
2167 2701 6.135290 TGGACTTTTGAAGTGTTTCTGATG 57.865 37.500 0.00 0.00 43.03 3.07
2168 2702 5.885352 TGGACTTTTGAAGTGTTTCTGATGA 59.115 36.000 0.00 0.00 43.03 2.92
2169 2703 6.038603 TGGACTTTTGAAGTGTTTCTGATGAG 59.961 38.462 0.00 0.00 43.03 2.90
2170 2704 6.038714 GGACTTTTGAAGTGTTTCTGATGAGT 59.961 38.462 0.00 0.00 43.03 3.41
2172 2706 8.682936 ACTTTTGAAGTGTTTCTGATGAGTAT 57.317 30.769 0.00 0.00 41.01 2.12
2174 2708 9.390795 CTTTTGAAGTGTTTCTGATGAGTATTG 57.609 33.333 0.00 0.00 34.31 1.90
2200 2737 0.650512 GTACAATCATGTGCCGTCCG 59.349 55.000 0.00 0.00 40.84 4.79
2206 2743 0.389296 TCATGTGCCGTCCGTAGTTG 60.389 55.000 0.00 0.00 0.00 3.16
2207 2744 1.740296 ATGTGCCGTCCGTAGTTGC 60.740 57.895 0.00 0.00 0.00 4.17
2213 2750 1.470285 GCCGTCCGTAGTTGCAGAATA 60.470 52.381 0.00 0.00 0.00 1.75
2224 2761 7.407337 CGTAGTTGCAGAATAATCCTTTAACC 58.593 38.462 0.00 0.00 0.00 2.85
2236 2773 3.558033 TCCTTTAACCCACAAAGTGACC 58.442 45.455 0.00 0.00 35.23 4.02
2263 2800 4.634443 ACGCATTACTCAGTACCCAATTTC 59.366 41.667 0.00 0.00 0.00 2.17
2278 2816 3.578282 CCAATTTCCCCAAAACAGCTAGT 59.422 43.478 0.00 0.00 0.00 2.57
2289 2827 5.920273 CCAAAACAGCTAGTGTACCAATTTG 59.080 40.000 0.00 3.00 39.03 2.32
2296 2834 6.765036 CAGCTAGTGTACCAATTTGATGATCT 59.235 38.462 0.00 0.00 0.00 2.75
2315 2853 3.897239 TCTGGACTTCTTTTTGGAGCAA 58.103 40.909 0.00 0.00 0.00 3.91
2345 2883 3.807553 TCTGTGCACTTGACATGAAGAA 58.192 40.909 19.41 0.00 0.00 2.52
2349 2887 4.398988 TGTGCACTTGACATGAAGAACTTT 59.601 37.500 19.41 0.00 0.00 2.66
2352 2890 5.806502 TGCACTTGACATGAAGAACTTTTTG 59.193 36.000 0.00 0.00 0.00 2.44
2358 2896 4.610945 ACATGAAGAACTTTTTGGAAGCG 58.389 39.130 0.00 0.00 0.00 4.68
2395 2933 6.313905 GCTGTAATTGTAGCAGTGTATGAGTT 59.686 38.462 9.96 0.00 39.67 3.01
2403 2941 8.392372 TGTAGCAGTGTATGAGTTATACTAGG 57.608 38.462 6.61 0.00 41.82 3.02
2405 2943 7.899648 AGCAGTGTATGAGTTATACTAGGTT 57.100 36.000 6.61 0.00 41.82 3.50
2408 2946 9.379791 GCAGTGTATGAGTTATACTAGGTTTTT 57.620 33.333 6.61 0.00 41.82 1.94
2443 2981 6.389830 ACATAGCAGATCGGATCTCATATC 57.610 41.667 17.41 5.35 37.58 1.63
2460 2998 9.708092 ATCTCATATCTGTTGTATGATCAGTTG 57.292 33.333 0.09 0.00 37.77 3.16
2462 3000 8.652810 TCATATCTGTTGTATGATCAGTTGTG 57.347 34.615 0.09 0.00 34.53 3.33
2474 3012 0.031178 CAGTTGTGCCCTTCTTGTGC 59.969 55.000 0.00 0.00 0.00 4.57
2475 3013 1.008538 GTTGTGCCCTTCTTGTGCG 60.009 57.895 0.00 0.00 0.00 5.34
2482 3020 1.503542 CCTTCTTGTGCGTGCCATC 59.496 57.895 0.00 0.00 0.00 3.51
2483 3021 1.133253 CTTCTTGTGCGTGCCATCG 59.867 57.895 0.00 0.00 0.00 3.84
2486 3024 0.319986 TCTTGTGCGTGCCATCGTAA 60.320 50.000 0.00 0.00 0.00 3.18
2487 3025 0.179225 CTTGTGCGTGCCATCGTAAC 60.179 55.000 0.00 0.00 0.00 2.50
2495 3033 3.181514 GCGTGCCATCGTAACAATACTTT 60.182 43.478 0.00 0.00 0.00 2.66
2548 3086 5.586643 GCCTAAACCTATTCCAGTTGAAGAG 59.413 44.000 0.00 0.00 41.11 2.85
2554 3092 5.073311 CTATTCCAGTTGAAGAGGTCGAA 57.927 43.478 0.00 0.00 38.40 3.71
2557 3095 2.897326 TCCAGTTGAAGAGGTCGAATCA 59.103 45.455 0.00 0.00 0.00 2.57
2572 3110 9.937175 GAGGTCGAATCAATTATTAAAAAGGAG 57.063 33.333 0.00 0.00 0.00 3.69
2743 3281 1.937899 AGCAACGACACTTTTACGCTT 59.062 42.857 0.00 0.00 0.00 4.68
2773 3311 2.202932 CATGTTCTCTCCGGGCCG 60.203 66.667 21.46 21.46 0.00 6.13
2835 3373 6.569610 CGCAAAAATAAGAAGGTTAGGCTGAA 60.570 38.462 0.00 0.00 0.00 3.02
3109 3733 5.163519 GCACTGGACAATAGCATTTAACCAT 60.164 40.000 0.00 0.00 0.00 3.55
3155 3779 0.524862 CTCAACTTGCATCAGGTGGC 59.475 55.000 3.65 0.00 31.72 5.01
3169 3793 5.715434 TCAGGTGGCCATAAAGTAAAAAC 57.285 39.130 9.72 0.00 0.00 2.43
3193 3817 6.329197 ACAGTACCCAGGCAGTAATGTATTAT 59.671 38.462 11.86 0.00 44.55 1.28
3273 3897 9.717942 CCTGAAAAGAATCATATAGGTAGAAGG 57.282 37.037 0.00 0.00 0.00 3.46
3357 3988 3.056035 GCCTTTGGGTATAGGATAGGACG 60.056 52.174 0.00 0.00 33.13 4.79
3359 3990 5.024118 CCTTTGGGTATAGGATAGGACGAT 58.976 45.833 0.00 0.00 33.13 3.73
3360 3991 5.127356 CCTTTGGGTATAGGATAGGACGATC 59.873 48.000 0.00 0.00 33.13 3.69
3361 3992 4.940468 TGGGTATAGGATAGGACGATCA 57.060 45.455 0.00 0.00 0.00 2.92
3362 3993 5.467668 TGGGTATAGGATAGGACGATCAT 57.532 43.478 0.00 0.00 0.00 2.45
3363 3994 5.838955 TGGGTATAGGATAGGACGATCATT 58.161 41.667 0.00 0.00 0.00 2.57
3386 4018 4.445453 TCATTCGTTATCATTGCTGCTCT 58.555 39.130 0.00 0.00 0.00 4.09
3478 4116 4.042809 TGTCAGTAGGGTGTCCATCAAATT 59.957 41.667 0.00 0.00 34.83 1.82
3486 4124 5.011023 AGGGTGTCCATCAAATTGACTTTTC 59.989 40.000 0.00 0.00 34.83 2.29
3491 4129 3.582208 CCATCAAATTGACTTTTCCCCCA 59.418 43.478 0.00 0.00 0.00 4.96
3495 4133 3.328535 AATTGACTTTTCCCCCACAGT 57.671 42.857 0.00 0.00 0.00 3.55
3496 4134 4.463050 AATTGACTTTTCCCCCACAGTA 57.537 40.909 0.00 0.00 0.00 2.74
3497 4135 2.943036 TGACTTTTCCCCCACAGTAC 57.057 50.000 0.00 0.00 0.00 2.73
3498 4136 2.414612 TGACTTTTCCCCCACAGTACT 58.585 47.619 0.00 0.00 0.00 2.73
3501 4140 3.819337 GACTTTTCCCCCACAGTACTTTC 59.181 47.826 0.00 0.00 0.00 2.62
3506 4145 2.841881 TCCCCCACAGTACTTTCCATAC 59.158 50.000 0.00 0.00 0.00 2.39
3511 4150 5.357032 CCCCACAGTACTTTCCATACATTTC 59.643 44.000 0.00 0.00 0.00 2.17
3515 4154 7.148407 CCACAGTACTTTCCATACATTTCAGAC 60.148 40.741 0.00 0.00 0.00 3.51
3520 4159 5.251700 ACTTTCCATACATTTCAGACCCTCT 59.748 40.000 0.00 0.00 0.00 3.69
3537 4177 0.249398 TCTTAAGCTTCGTGGGCCTC 59.751 55.000 0.00 0.00 0.00 4.70
3556 4199 4.455606 CCTCCCATTCTGGTTTCTCATAC 58.544 47.826 0.00 0.00 35.17 2.39
3557 4200 4.164988 CCTCCCATTCTGGTTTCTCATACT 59.835 45.833 0.00 0.00 35.17 2.12
3558 4201 5.366768 CCTCCCATTCTGGTTTCTCATACTA 59.633 44.000 0.00 0.00 35.17 1.82
3563 4206 9.224267 CCCATTCTGGTTTCTCATACTATATTG 57.776 37.037 0.00 0.00 35.17 1.90
3566 4209 8.662781 TTCTGGTTTCTCATACTATATTGTGC 57.337 34.615 0.00 0.00 0.00 4.57
3572 4215 8.818057 GTTTCTCATACTATATTGTGCGTTCTT 58.182 33.333 0.00 0.00 0.00 2.52
3656 4300 8.402472 CCACTGTATCAGTAGTTTTGTTTTTCA 58.598 33.333 2.03 0.00 43.43 2.69
3737 4383 5.965033 ATATGGATCTGTTGAAGACCACT 57.035 39.130 0.00 0.00 38.27 4.00
3772 4418 3.686916 ACACAAGAGAAGAGTTAGCCC 57.313 47.619 0.00 0.00 0.00 5.19
3776 4422 1.187087 AGAGAAGAGTTAGCCCGTGG 58.813 55.000 0.00 0.00 0.00 4.94
3787 4435 2.744709 CCCGTGGGCCAGTAAACG 60.745 66.667 6.40 6.47 35.85 3.60
3836 4484 6.030849 CCATGTGTTTGAACAACTAAACGAA 58.969 36.000 0.00 0.00 41.21 3.85
3871 4519 9.670442 ATGGATCCTGAACTAAATTACTAGGTA 57.330 33.333 14.23 0.00 0.00 3.08
3875 4524 7.655403 TCCTGAACTAAATTACTAGGTAGGGA 58.345 38.462 0.00 0.00 0.00 4.20
3876 4525 7.783596 TCCTGAACTAAATTACTAGGTAGGGAG 59.216 40.741 0.00 0.00 0.00 4.30
3877 4526 7.015389 CCTGAACTAAATTACTAGGTAGGGAGG 59.985 44.444 0.00 0.00 0.00 4.30
3878 4527 7.655403 TGAACTAAATTACTAGGTAGGGAGGA 58.345 38.462 0.00 0.00 0.00 3.71
3879 4528 7.783596 TGAACTAAATTACTAGGTAGGGAGGAG 59.216 40.741 0.00 0.00 0.00 3.69
3880 4529 7.236465 ACTAAATTACTAGGTAGGGAGGAGT 57.764 40.000 0.00 0.00 0.00 3.85
3883 4532 9.652114 CTAAATTACTAGGTAGGGAGGAGTAAA 57.348 37.037 0.00 0.00 36.48 2.01
3884 4533 7.911130 AATTACTAGGTAGGGAGGAGTAAAC 57.089 40.000 0.00 0.00 36.48 2.01
3885 4534 4.961440 ACTAGGTAGGGAGGAGTAAACA 57.039 45.455 0.00 0.00 0.00 2.83
3888 4537 2.117051 GGTAGGGAGGAGTAAACAGGG 58.883 57.143 0.00 0.00 0.00 4.45
3889 4538 2.292719 GGTAGGGAGGAGTAAACAGGGA 60.293 54.545 0.00 0.00 0.00 4.20
3894 4543 2.644676 GAGGAGTAAACAGGGAATGGC 58.355 52.381 0.00 0.00 0.00 4.40
3895 4544 2.239907 GAGGAGTAAACAGGGAATGGCT 59.760 50.000 0.00 0.00 0.00 4.75
3922 4576 4.808558 TGCAGCCTTATTCATGTTGAAAC 58.191 39.130 0.00 0.00 40.12 2.78
3950 4604 8.543774 ACTAAATAATCTCTTCTTTCAGCCTGA 58.456 33.333 0.00 0.00 0.00 3.86
3959 4613 2.703536 TCTTTCAGCCTGACAGGTGTTA 59.296 45.455 22.58 9.49 37.80 2.41
3960 4614 3.135712 TCTTTCAGCCTGACAGGTGTTAA 59.864 43.478 22.58 14.80 37.80 2.01
3961 4615 3.569194 TTCAGCCTGACAGGTGTTAAA 57.431 42.857 22.58 7.87 37.80 1.52
3965 4621 1.878953 CCTGACAGGTGTTAAACGCT 58.121 50.000 13.84 0.00 0.00 5.07
3998 4654 2.168521 GAGGATCGGATCTGTTGAACCA 59.831 50.000 16.96 0.00 35.16 3.67
4009 4665 0.168128 GTTGAACCAGGGAAATCGCG 59.832 55.000 0.00 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.404734 GCCGAGGACAATGATATTTTTGAACT 60.405 38.462 5.79 3.77 0.00 3.01
31 32 4.422073 TGAGCCGAGGACAATGATATTT 57.578 40.909 0.00 0.00 0.00 1.40
35 36 1.764723 TGATGAGCCGAGGACAATGAT 59.235 47.619 0.00 0.00 0.00 2.45
43 44 2.275318 GAACTTCTTGATGAGCCGAGG 58.725 52.381 0.00 0.00 0.00 4.63
45 46 1.902508 AGGAACTTCTTGATGAGCCGA 59.097 47.619 0.00 0.00 27.25 5.54
49 50 8.006298 ACTATGAGTAGGAACTTCTTGATGAG 57.994 38.462 0.00 0.00 35.82 2.90
58 60 3.767673 TCGGCAACTATGAGTAGGAACTT 59.232 43.478 0.00 0.00 41.75 2.66
86 88 1.153509 GCCAAGTGATTGCCATGCC 60.154 57.895 0.00 0.00 0.00 4.40
96 98 0.991146 TTCCCTGCTATGCCAAGTGA 59.009 50.000 0.00 0.00 0.00 3.41
103 105 3.874392 AACACATTTTCCCTGCTATGC 57.126 42.857 0.00 0.00 0.00 3.14
110 112 3.037549 TCCTTGCAAACACATTTTCCCT 58.962 40.909 0.00 0.00 0.00 4.20
112 114 5.526846 TGATTTCCTTGCAAACACATTTTCC 59.473 36.000 0.00 0.00 0.00 3.13
113 115 6.258507 AGTGATTTCCTTGCAAACACATTTTC 59.741 34.615 0.00 0.00 0.00 2.29
114 116 6.037391 CAGTGATTTCCTTGCAAACACATTTT 59.963 34.615 0.00 0.00 0.00 1.82
115 117 5.524646 CAGTGATTTCCTTGCAAACACATTT 59.475 36.000 0.00 0.00 0.00 2.32
117 119 4.341806 TCAGTGATTTCCTTGCAAACACAT 59.658 37.500 0.00 0.00 0.00 3.21
118 120 3.698539 TCAGTGATTTCCTTGCAAACACA 59.301 39.130 0.00 0.00 0.00 3.72
119 121 4.305989 TCAGTGATTTCCTTGCAAACAC 57.694 40.909 0.00 4.78 0.00 3.32
120 122 4.737352 GCTTCAGTGATTTCCTTGCAAACA 60.737 41.667 0.00 0.00 0.00 2.83
122 124 3.384146 TGCTTCAGTGATTTCCTTGCAAA 59.616 39.130 0.00 0.00 0.00 3.68
123 125 2.957680 TGCTTCAGTGATTTCCTTGCAA 59.042 40.909 0.00 0.00 0.00 4.08
125 127 2.555757 ACTGCTTCAGTGATTTCCTTGC 59.444 45.455 0.00 0.00 43.63 4.01
149 153 6.602009 ACTTATAAGCCTGGTGTTTAATGTCC 59.398 38.462 12.54 0.00 0.00 4.02
150 154 7.625828 ACTTATAAGCCTGGTGTTTAATGTC 57.374 36.000 12.54 0.00 0.00 3.06
180 184 8.467598 TCAGACTAGCCTAATGTAGTTTTACAG 58.532 37.037 0.00 0.00 42.72 2.74
184 188 7.548967 GTCTCAGACTAGCCTAATGTAGTTTT 58.451 38.462 0.00 0.00 29.34 2.43
191 195 2.287909 GGCGTCTCAGACTAGCCTAATG 60.288 54.545 14.74 0.00 44.06 1.90
192 196 1.957877 GGCGTCTCAGACTAGCCTAAT 59.042 52.381 14.74 0.00 44.06 1.73
215 226 1.980772 GCCATTGTCTGCCCTTGCT 60.981 57.895 0.00 0.00 38.71 3.91
216 227 1.610554 ATGCCATTGTCTGCCCTTGC 61.611 55.000 0.00 0.00 38.26 4.01
221 232 1.076485 AGGGATGCCATTGTCTGCC 60.076 57.895 5.86 0.00 0.00 4.85
225 236 2.381911 ACATTGAGGGATGCCATTGTC 58.618 47.619 5.86 0.00 0.00 3.18
226 237 2.537633 ACATTGAGGGATGCCATTGT 57.462 45.000 5.86 0.13 0.00 2.71
231 242 4.887071 TGTTGTTATACATTGAGGGATGCC 59.113 41.667 0.00 0.00 0.00 4.40
232 243 5.506317 GCTGTTGTTATACATTGAGGGATGC 60.506 44.000 0.00 0.00 0.00 3.91
234 245 6.006275 AGCTGTTGTTATACATTGAGGGAT 57.994 37.500 0.00 0.00 0.00 3.85
235 246 5.435686 AGCTGTTGTTATACATTGAGGGA 57.564 39.130 0.00 0.00 0.00 4.20
237 248 5.234329 CCGTAGCTGTTGTTATACATTGAGG 59.766 44.000 0.00 0.00 0.00 3.86
238 249 6.040247 TCCGTAGCTGTTGTTATACATTGAG 58.960 40.000 0.00 0.00 0.00 3.02
239 250 5.968254 TCCGTAGCTGTTGTTATACATTGA 58.032 37.500 0.00 0.00 0.00 2.57
240 251 5.810587 ACTCCGTAGCTGTTGTTATACATTG 59.189 40.000 0.00 0.00 0.00 2.82
241 252 5.974108 ACTCCGTAGCTGTTGTTATACATT 58.026 37.500 0.00 0.00 0.00 2.71
243 254 4.437794 CGACTCCGTAGCTGTTGTTATACA 60.438 45.833 0.00 0.00 0.00 2.29
244 255 4.033684 CGACTCCGTAGCTGTTGTTATAC 58.966 47.826 0.00 0.00 0.00 1.47
245 256 3.065786 CCGACTCCGTAGCTGTTGTTATA 59.934 47.826 0.00 0.00 0.00 0.98
246 257 2.159282 CCGACTCCGTAGCTGTTGTTAT 60.159 50.000 0.00 0.00 0.00 1.89
247 258 1.200716 CCGACTCCGTAGCTGTTGTTA 59.799 52.381 0.00 0.00 0.00 2.41
248 259 0.038526 CCGACTCCGTAGCTGTTGTT 60.039 55.000 0.00 0.00 0.00 2.83
250 261 0.038526 AACCGACTCCGTAGCTGTTG 60.039 55.000 0.00 0.00 0.00 3.33
251 262 0.243095 GAACCGACTCCGTAGCTGTT 59.757 55.000 0.00 0.00 0.00 3.16
252 263 0.608582 AGAACCGACTCCGTAGCTGT 60.609 55.000 0.00 0.00 0.00 4.40
253 264 1.063764 GTAGAACCGACTCCGTAGCTG 59.936 57.143 0.00 0.00 0.00 4.24
255 266 1.330213 GAGTAGAACCGACTCCGTAGC 59.670 57.143 0.00 0.00 37.89 3.58
256 267 2.625737 TGAGTAGAACCGACTCCGTAG 58.374 52.381 5.10 0.00 42.29 3.51
257 268 2.768253 TGAGTAGAACCGACTCCGTA 57.232 50.000 5.10 0.00 42.29 4.02
258 269 2.125773 ATGAGTAGAACCGACTCCGT 57.874 50.000 5.10 0.00 42.29 4.69
259 270 2.798680 CAATGAGTAGAACCGACTCCG 58.201 52.381 5.10 0.00 42.29 4.63
260 271 2.094182 TGCAATGAGTAGAACCGACTCC 60.094 50.000 5.10 0.00 42.29 3.85
261 272 3.232213 TGCAATGAGTAGAACCGACTC 57.768 47.619 0.00 0.00 43.10 3.36
262 273 3.195610 TGATGCAATGAGTAGAACCGACT 59.804 43.478 0.00 0.00 0.00 4.18
263 274 3.521560 TGATGCAATGAGTAGAACCGAC 58.478 45.455 0.00 0.00 0.00 4.79
264 275 3.885724 TGATGCAATGAGTAGAACCGA 57.114 42.857 0.00 0.00 0.00 4.69
265 276 3.063997 GGTTGATGCAATGAGTAGAACCG 59.936 47.826 0.00 0.00 0.00 4.44
266 277 4.009675 TGGTTGATGCAATGAGTAGAACC 58.990 43.478 0.00 0.00 32.33 3.62
267 278 4.697352 ACTGGTTGATGCAATGAGTAGAAC 59.303 41.667 0.00 0.00 0.00 3.01
268 279 4.696877 CACTGGTTGATGCAATGAGTAGAA 59.303 41.667 0.00 0.00 0.00 2.10
269 280 4.020307 TCACTGGTTGATGCAATGAGTAGA 60.020 41.667 0.00 0.00 0.00 2.59
270 281 4.256110 TCACTGGTTGATGCAATGAGTAG 58.744 43.478 0.00 0.00 0.00 2.57
271 282 4.284829 TCACTGGTTGATGCAATGAGTA 57.715 40.909 0.00 0.00 0.00 2.59
272 283 3.144657 TCACTGGTTGATGCAATGAGT 57.855 42.857 0.00 0.00 0.00 3.41
333 344 2.131183 GATTCGCCTGTTAGCTAGCTG 58.869 52.381 27.68 11.08 0.00 4.24
334 345 1.757118 TGATTCGCCTGTTAGCTAGCT 59.243 47.619 23.12 23.12 0.00 3.32
335 346 1.861575 GTGATTCGCCTGTTAGCTAGC 59.138 52.381 6.62 6.62 0.00 3.42
336 347 3.181486 TGAGTGATTCGCCTGTTAGCTAG 60.181 47.826 0.00 0.00 0.00 3.42
337 348 2.758423 TGAGTGATTCGCCTGTTAGCTA 59.242 45.455 0.00 0.00 0.00 3.32
425 438 0.034337 TGAGGTTAACTGACGGTGGC 59.966 55.000 5.42 0.00 0.00 5.01
484 508 3.193479 GTCTTTGCTTCCGGATTTTCCAT 59.807 43.478 4.15 0.00 35.91 3.41
487 511 2.414161 CCGTCTTTGCTTCCGGATTTTC 60.414 50.000 4.15 0.00 43.01 2.29
578 602 1.690283 CGATTCTGTCTGTGCAGGCG 61.690 60.000 0.00 0.00 35.37 5.52
599 623 1.226974 GCTTAGATCGGTGCGCTCA 60.227 57.895 9.73 0.00 0.00 4.26
618 642 0.386113 CTTCCTCGGACGATTCCCTC 59.614 60.000 0.00 0.00 38.99 4.30
662 687 2.025418 CGTAAGCACCGCCGTCTTT 61.025 57.895 0.00 0.00 0.00 2.52
672 697 0.539986 TCATCCTTCCCCGTAAGCAC 59.460 55.000 0.00 0.00 0.00 4.40
674 699 0.179054 GGTCATCCTTCCCCGTAAGC 60.179 60.000 0.00 0.00 0.00 3.09
698 723 2.978565 CGCGAGATCTCCGGCCTA 60.979 66.667 17.13 0.00 0.00 3.93
776 804 1.006805 CCTAGAGATTGAGGCGCGG 60.007 63.158 8.83 0.00 0.00 6.46
777 805 1.006805 CCCTAGAGATTGAGGCGCG 60.007 63.158 0.00 0.00 0.00 6.86
778 806 0.466124 AACCCTAGAGATTGAGGCGC 59.534 55.000 0.00 0.00 0.00 6.53
779 807 2.939103 CAAAACCCTAGAGATTGAGGCG 59.061 50.000 0.00 0.00 0.00 5.52
780 808 2.685388 GCAAAACCCTAGAGATTGAGGC 59.315 50.000 0.00 0.00 0.00 4.70
781 809 4.080638 AGAGCAAAACCCTAGAGATTGAGG 60.081 45.833 0.00 0.00 0.00 3.86
782 810 5.096443 AGAGCAAAACCCTAGAGATTGAG 57.904 43.478 0.00 0.00 0.00 3.02
783 811 5.249393 AGAAGAGCAAAACCCTAGAGATTGA 59.751 40.000 0.00 0.00 0.00 2.57
784 812 5.495640 AGAAGAGCAAAACCCTAGAGATTG 58.504 41.667 0.00 0.00 0.00 2.67
787 1250 4.841246 AGAAGAAGAGCAAAACCCTAGAGA 59.159 41.667 0.00 0.00 0.00 3.10
802 1265 4.493618 TCCTCCTCCAAGAAAGAAGAAGA 58.506 43.478 0.00 0.00 0.00 2.87
805 1268 3.177228 CCTCCTCCTCCAAGAAAGAAGA 58.823 50.000 0.00 0.00 0.00 2.87
835 1299 0.941463 CATATGAGGACGCGCAGGTC 60.941 60.000 5.73 7.64 36.18 3.85
927 1396 6.765403 ACAAAATATAGCCGCTTATCACCTA 58.235 36.000 0.00 0.00 0.00 3.08
1124 1616 3.775654 CCGTCAGCTCCCAGTCCC 61.776 72.222 0.00 0.00 0.00 4.46
1125 1617 4.459089 GCCGTCAGCTCCCAGTCC 62.459 72.222 0.00 0.00 38.99 3.85
1126 1618 4.803426 CGCCGTCAGCTCCCAGTC 62.803 72.222 0.00 0.00 40.39 3.51
1153 1645 4.150454 CTCCCTCCGCCTCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
1421 1913 2.976882 GAGGCTAGAGGAGAGACTAGGA 59.023 54.545 0.00 0.00 37.25 2.94
1441 1934 0.107214 GACCCATTGCTCCATTCGGA 60.107 55.000 0.00 0.00 39.79 4.55
1462 1956 0.535335 AGGCCAGCGATCTAAACGAA 59.465 50.000 5.01 0.00 0.00 3.85
1474 1968 1.227615 GCTCATGAGAGAGGCCAGC 60.228 63.158 27.04 4.39 44.98 4.85
1535 2041 6.375174 GGCATTGGTCATATATAGCACAATCA 59.625 38.462 0.00 0.00 0.00 2.57
1547 2053 1.148273 ACGGCGGCATTGGTCATAT 59.852 52.632 13.24 0.00 0.00 1.78
1548 2054 1.817520 CACGGCGGCATTGGTCATA 60.818 57.895 13.24 0.00 0.00 2.15
1549 2055 3.133464 CACGGCGGCATTGGTCAT 61.133 61.111 13.24 0.00 0.00 3.06
1569 2075 5.741388 AATTTATGTGGCGATGAGAGTTC 57.259 39.130 0.00 0.00 0.00 3.01
1576 2082 4.104776 GGTGTGAAATTTATGTGGCGATG 58.895 43.478 0.00 0.00 0.00 3.84
1580 2086 4.658071 CGTAGGTGTGAAATTTATGTGGC 58.342 43.478 0.00 0.00 0.00 5.01
1597 2106 4.155099 TGTTATGCACAATTGTTCCGTAGG 59.845 41.667 8.77 0.00 40.87 3.18
1598 2107 5.121611 TCTGTTATGCACAATTGTTCCGTAG 59.878 40.000 8.77 0.00 33.87 3.51
1602 2111 4.923281 GGTTCTGTTATGCACAATTGTTCC 59.077 41.667 8.77 3.67 33.87 3.62
1605 2114 4.584325 ACAGGTTCTGTTATGCACAATTGT 59.416 37.500 4.92 4.92 42.59 2.71
1608 2117 4.397420 TCACAGGTTCTGTTATGCACAAT 58.603 39.130 0.00 0.00 42.59 2.71
1611 2120 2.744202 CCTCACAGGTTCTGTTATGCAC 59.256 50.000 0.00 0.00 42.59 4.57
1621 2130 2.165030 CCAAATGCATCCTCACAGGTTC 59.835 50.000 0.00 0.00 36.53 3.62
1632 2141 3.866910 CACAACCAATAGCCAAATGCATC 59.133 43.478 0.00 0.00 44.83 3.91
1699 2214 9.179909 TGATTCAAGTAACAAGGACTACAAAAA 57.820 29.630 0.00 0.00 0.00 1.94
1700 2215 8.740123 TGATTCAAGTAACAAGGACTACAAAA 57.260 30.769 0.00 0.00 0.00 2.44
1704 2219 6.371548 TGCATGATTCAAGTAACAAGGACTAC 59.628 38.462 0.00 0.00 0.00 2.73
1709 2224 6.623486 TGATTGCATGATTCAAGTAACAAGG 58.377 36.000 0.00 0.00 0.00 3.61
1727 2242 4.568956 AGCCCAAAGTTTAACATGATTGC 58.431 39.130 0.00 1.12 0.00 3.56
1736 2255 5.705441 CACATCTCACTAGCCCAAAGTTTAA 59.295 40.000 0.00 0.00 0.00 1.52
1741 2260 3.529533 CTCACATCTCACTAGCCCAAAG 58.470 50.000 0.00 0.00 0.00 2.77
1748 2267 4.403752 TGGATTCACCTCACATCTCACTAG 59.596 45.833 0.00 0.00 39.86 2.57
1768 2287 1.776662 AGCAGGCTATCGTAGTTGGA 58.223 50.000 0.00 0.00 0.00 3.53
1774 2293 4.066646 TGCAAATAAGCAGGCTATCGTA 57.933 40.909 0.00 0.00 40.11 3.43
1776 2295 3.881795 CTTGCAAATAAGCAGGCTATCG 58.118 45.455 0.00 0.00 46.54 2.92
1798 2331 1.654954 GACAGCTCAAGGCAGCATGG 61.655 60.000 0.00 0.00 42.40 3.66
1802 2335 1.303155 AAGGACAGCTCAAGGCAGC 60.303 57.895 0.00 0.00 44.79 5.25
1803 2336 0.324285 AGAAGGACAGCTCAAGGCAG 59.676 55.000 0.00 0.00 44.79 4.85
1804 2337 0.322975 GAGAAGGACAGCTCAAGGCA 59.677 55.000 0.00 0.00 44.79 4.75
1805 2338 0.322975 TGAGAAGGACAGCTCAAGGC 59.677 55.000 0.00 0.00 38.14 4.35
1806 2339 1.345741 TGTGAGAAGGACAGCTCAAGG 59.654 52.381 0.00 0.00 42.27 3.61
1807 2340 2.827800 TGTGAGAAGGACAGCTCAAG 57.172 50.000 0.00 0.00 42.27 3.02
1808 2341 3.558931 TTTGTGAGAAGGACAGCTCAA 57.441 42.857 0.00 0.00 42.27 3.02
1809 2342 3.777106 ATTTGTGAGAAGGACAGCTCA 57.223 42.857 0.00 0.00 38.72 4.26
1810 2343 6.112058 AGAATATTTGTGAGAAGGACAGCTC 58.888 40.000 0.00 0.00 0.00 4.09
1811 2344 6.059787 AGAATATTTGTGAGAAGGACAGCT 57.940 37.500 0.00 0.00 0.00 4.24
1812 2345 6.036953 CAGAGAATATTTGTGAGAAGGACAGC 59.963 42.308 0.00 0.00 0.00 4.40
1813 2346 6.036953 GCAGAGAATATTTGTGAGAAGGACAG 59.963 42.308 0.00 0.00 0.00 3.51
1814 2347 5.877012 GCAGAGAATATTTGTGAGAAGGACA 59.123 40.000 0.00 0.00 0.00 4.02
1815 2348 5.877012 TGCAGAGAATATTTGTGAGAAGGAC 59.123 40.000 0.00 0.00 0.00 3.85
1816 2349 6.053632 TGCAGAGAATATTTGTGAGAAGGA 57.946 37.500 0.00 0.00 0.00 3.36
1817 2350 6.111382 TCTGCAGAGAATATTTGTGAGAAGG 58.889 40.000 13.74 0.00 0.00 3.46
1818 2351 7.789273 ATCTGCAGAGAATATTTGTGAGAAG 57.211 36.000 22.96 0.00 0.00 2.85
1819 2352 8.571461 AAATCTGCAGAGAATATTTGTGAGAA 57.429 30.769 22.96 0.00 0.00 2.87
1820 2353 9.102757 GTAAATCTGCAGAGAATATTTGTGAGA 57.897 33.333 22.96 0.00 0.00 3.27
1821 2354 8.886719 TGTAAATCTGCAGAGAATATTTGTGAG 58.113 33.333 22.96 0.00 0.00 3.51
1822 2355 8.791327 TGTAAATCTGCAGAGAATATTTGTGA 57.209 30.769 22.96 0.00 0.00 3.58
1825 2358 9.674824 GGATTGTAAATCTGCAGAGAATATTTG 57.325 33.333 22.96 0.00 0.00 2.32
1826 2359 9.638176 AGGATTGTAAATCTGCAGAGAATATTT 57.362 29.630 22.96 18.21 0.00 1.40
1827 2360 9.064706 CAGGATTGTAAATCTGCAGAGAATATT 57.935 33.333 22.96 8.16 0.00 1.28
1828 2361 8.618702 CAGGATTGTAAATCTGCAGAGAATAT 57.381 34.615 22.96 10.11 0.00 1.28
1830 2363 6.939132 CAGGATTGTAAATCTGCAGAGAAT 57.061 37.500 22.96 13.61 0.00 2.40
1852 2385 3.415212 CCTCTTCTTCACTTGGATTGCA 58.585 45.455 0.00 0.00 0.00 4.08
1906 2439 2.285969 AGCCCAGGATGCAGAGGT 60.286 61.111 0.00 0.00 31.97 3.85
1966 2499 2.289072 ACAACCTTCGGTGTCTCTGATG 60.289 50.000 0.00 0.00 35.34 3.07
1978 2511 5.048364 TCCAATGAAACCATAACAACCTTCG 60.048 40.000 0.00 0.00 0.00 3.79
1996 2529 3.274288 GGAACCTCTTGTAGCTCCAATG 58.726 50.000 0.00 0.00 0.00 2.82
2005 2538 2.344592 ACCCACATGGAACCTCTTGTA 58.655 47.619 0.00 0.00 37.39 2.41
2017 2550 2.039746 TGGGTTGAGAAGTACCCACATG 59.960 50.000 8.87 0.00 46.53 3.21
2036 2569 4.808414 TCAGACAGAGGTTAGTGAATGG 57.192 45.455 0.00 0.00 0.00 3.16
2043 2576 8.017946 GCAAATAAAGTTTCAGACAGAGGTTAG 58.982 37.037 0.00 0.00 0.00 2.34
2044 2577 7.719633 AGCAAATAAAGTTTCAGACAGAGGTTA 59.280 33.333 0.00 0.00 0.00 2.85
2074 2608 3.433709 TCGAACAAGAAAATCGAAGCG 57.566 42.857 0.00 0.00 42.07 4.68
2122 2656 3.142174 GGGTGGCAAGCTATCTAACATC 58.858 50.000 0.00 0.00 0.00 3.06
2123 2657 2.780010 AGGGTGGCAAGCTATCTAACAT 59.220 45.455 0.00 0.00 0.00 2.71
2148 2682 9.390795 CAATACTCATCAGAAACACTTCAAAAG 57.609 33.333 0.00 0.00 33.64 2.27
2169 2703 9.825972 GGCACATGATTGTACAATATACAATAC 57.174 33.333 20.83 6.86 45.10 1.89
2170 2704 8.716909 CGGCACATGATTGTACAATATACAATA 58.283 33.333 20.83 3.09 45.10 1.90
2172 2706 6.540551 ACGGCACATGATTGTACAATATACAA 59.459 34.615 20.83 5.62 41.05 2.41
2174 2708 6.347402 GGACGGCACATGATTGTACAATATAC 60.347 42.308 20.83 9.64 33.76 1.47
2187 2724 0.389296 CAACTACGGACGGCACATGA 60.389 55.000 0.00 0.00 0.00 3.07
2189 2726 1.740296 GCAACTACGGACGGCACAT 60.740 57.895 0.00 0.00 0.00 3.21
2191 2728 2.356553 TGCAACTACGGACGGCAC 60.357 61.111 0.00 0.00 0.00 5.01
2200 2737 7.338449 TGGGTTAAAGGATTATTCTGCAACTAC 59.662 37.037 0.00 0.00 0.00 2.73
2206 2743 6.524101 TTGTGGGTTAAAGGATTATTCTGC 57.476 37.500 0.00 0.00 0.00 4.26
2207 2744 8.028938 CACTTTGTGGGTTAAAGGATTATTCTG 58.971 37.037 0.00 0.00 38.99 3.02
2213 2750 4.587262 GGTCACTTTGTGGGTTAAAGGATT 59.413 41.667 0.00 0.00 38.99 3.01
2224 2761 0.248458 GCGTGTTGGTCACTTTGTGG 60.248 55.000 0.00 0.00 44.16 4.17
2236 2773 2.671396 GGGTACTGAGTAATGCGTGTTG 59.329 50.000 0.00 0.00 0.00 3.33
2263 2800 2.224670 TGGTACACTAGCTGTTTTGGGG 60.225 50.000 0.00 0.00 33.91 4.96
2278 2816 6.065976 AGTCCAGATCATCAAATTGGTACA 57.934 37.500 0.00 0.00 0.00 2.90
2289 2827 5.163673 GCTCCAAAAAGAAGTCCAGATCATC 60.164 44.000 0.00 0.00 0.00 2.92
2296 2834 5.358922 CATTTTGCTCCAAAAAGAAGTCCA 58.641 37.500 7.15 0.00 44.68 4.02
2325 2863 3.562973 AGTTCTTCATGTCAAGTGCACAG 59.437 43.478 21.04 11.41 0.00 3.66
2335 2873 4.676924 CGCTTCCAAAAAGTTCTTCATGTC 59.323 41.667 0.00 0.00 0.00 3.06
2345 2883 5.767816 ACAAGTTATCGCTTCCAAAAAGT 57.232 34.783 0.00 0.00 0.00 2.66
2349 2887 4.037446 AGCAAACAAGTTATCGCTTCCAAA 59.963 37.500 0.00 0.00 0.00 3.28
2352 2890 3.058224 ACAGCAAACAAGTTATCGCTTCC 60.058 43.478 2.78 0.00 0.00 3.46
2358 2896 8.020819 TGCTACAATTACAGCAAACAAGTTATC 58.979 33.333 9.98 0.00 44.49 1.75
2408 2946 7.610305 TCCGATCTGCTATGTTACTACATATCA 59.390 37.037 0.00 0.00 44.16 2.15
2414 2952 6.149640 TGAGATCCGATCTGCTATGTTACTAC 59.850 42.308 15.85 0.00 40.38 2.73
2417 2955 5.378292 TGAGATCCGATCTGCTATGTTAC 57.622 43.478 15.85 0.00 40.38 2.50
2418 2956 7.777440 AGATATGAGATCCGATCTGCTATGTTA 59.223 37.037 15.85 0.00 40.38 2.41
2419 2957 6.606796 AGATATGAGATCCGATCTGCTATGTT 59.393 38.462 15.85 1.70 40.38 2.71
2420 2958 6.039605 CAGATATGAGATCCGATCTGCTATGT 59.960 42.308 15.85 7.82 40.38 2.29
2421 2959 6.039605 ACAGATATGAGATCCGATCTGCTATG 59.960 42.308 15.85 8.88 46.07 2.23
2422 2960 6.128486 ACAGATATGAGATCCGATCTGCTAT 58.872 40.000 15.85 11.24 46.07 2.97
2423 2961 5.504853 ACAGATATGAGATCCGATCTGCTA 58.495 41.667 15.85 7.20 46.07 3.49
2427 2965 7.613411 TCATACAACAGATATGAGATCCGATCT 59.387 37.037 10.83 10.83 43.70 2.75
2431 2969 7.542025 TGATCATACAACAGATATGAGATCCG 58.458 38.462 0.00 0.00 41.24 4.18
2433 2971 9.926158 AACTGATCATACAACAGATATGAGATC 57.074 33.333 0.00 0.00 41.24 2.75
2443 2981 3.127548 GGGCACAACTGATCATACAACAG 59.872 47.826 0.00 0.00 37.62 3.16
2462 3000 4.043200 GGCACGCACAAGAAGGGC 62.043 66.667 0.00 0.00 45.63 5.19
2474 3012 4.092237 TGAAAGTATTGTTACGATGGCACG 59.908 41.667 7.71 7.71 39.31 5.34
2475 3013 5.321516 GTGAAAGTATTGTTACGATGGCAC 58.678 41.667 0.00 0.00 33.32 5.01
2482 3020 3.184783 TGCACGGTGAAAGTATTGTTACG 59.815 43.478 13.29 0.00 33.32 3.18
2483 3021 4.212636 ACTGCACGGTGAAAGTATTGTTAC 59.787 41.667 13.29 0.00 0.00 2.50
2486 3024 2.846193 ACTGCACGGTGAAAGTATTGT 58.154 42.857 13.29 0.00 0.00 2.71
2487 3025 5.351233 TTTACTGCACGGTGAAAGTATTG 57.649 39.130 13.29 0.00 0.00 1.90
2495 3033 0.179043 TGCCTTTTACTGCACGGTGA 60.179 50.000 13.29 0.00 31.31 4.02
2557 3095 9.822727 TGTTCCTCCTTCTCCTTTTTAATAATT 57.177 29.630 0.00 0.00 0.00 1.40
2572 3110 3.750652 CAGCTTTCTCTTGTTCCTCCTTC 59.249 47.826 0.00 0.00 0.00 3.46
2612 3150 2.311841 ACCCCTTATCCCAGTTTTCCAG 59.688 50.000 0.00 0.00 0.00 3.86
2692 3230 7.260603 CACCTTTTGAAGTTGATTTCTTGACT 58.739 34.615 0.00 0.00 0.00 3.41
2743 3281 1.133823 AGAACATGAACACTGGCACCA 60.134 47.619 0.00 0.00 0.00 4.17
2773 3311 1.006922 GCCAGTGAAGCCTGCAAAC 60.007 57.895 0.00 0.00 0.00 2.93
3035 3576 5.584253 TCAGAAGTGCTCAGGTATTAGAC 57.416 43.478 0.00 0.00 0.00 2.59
3109 3733 5.048504 GCAGATGTTGATTCTTGGAAACTGA 60.049 40.000 0.00 0.00 0.00 3.41
3155 3779 6.349860 GCCTGGGTACTGTTTTTACTTTATGG 60.350 42.308 0.00 0.00 0.00 2.74
3169 3793 4.689612 ATACATTACTGCCTGGGTACTG 57.310 45.455 0.00 0.00 0.00 2.74
3193 3817 9.151177 CTTGTACTAGTAACCCCCTAATGATTA 57.849 37.037 3.61 0.00 0.00 1.75
3357 3988 7.149015 GCAGCAATGATAACGAATGAAATGATC 60.149 37.037 0.00 0.00 0.00 2.92
3359 3990 5.972973 GCAGCAATGATAACGAATGAAATGA 59.027 36.000 0.00 0.00 0.00 2.57
3360 3991 5.975344 AGCAGCAATGATAACGAATGAAATG 59.025 36.000 0.00 0.00 0.00 2.32
3361 3992 6.039047 AGAGCAGCAATGATAACGAATGAAAT 59.961 34.615 0.00 0.00 0.00 2.17
3362 3993 5.355071 AGAGCAGCAATGATAACGAATGAAA 59.645 36.000 0.00 0.00 0.00 2.69
3363 3994 4.877823 AGAGCAGCAATGATAACGAATGAA 59.122 37.500 0.00 0.00 0.00 2.57
3478 4116 2.414612 AGTACTGTGGGGGAAAAGTCA 58.585 47.619 0.00 0.00 0.00 3.41
3486 4124 2.574369 TGTATGGAAAGTACTGTGGGGG 59.426 50.000 0.00 0.00 0.00 5.40
3491 4129 6.879458 GGTCTGAAATGTATGGAAAGTACTGT 59.121 38.462 0.00 0.00 0.00 3.55
3495 4133 6.443849 AGAGGGTCTGAAATGTATGGAAAGTA 59.556 38.462 0.00 0.00 0.00 2.24
3496 4134 5.251700 AGAGGGTCTGAAATGTATGGAAAGT 59.748 40.000 0.00 0.00 0.00 2.66
3497 4135 5.749462 AGAGGGTCTGAAATGTATGGAAAG 58.251 41.667 0.00 0.00 0.00 2.62
3498 4136 5.779241 AGAGGGTCTGAAATGTATGGAAA 57.221 39.130 0.00 0.00 0.00 3.13
3501 4140 5.529060 GCTTAAGAGGGTCTGAAATGTATGG 59.471 44.000 6.67 0.00 0.00 2.74
3506 4145 4.331168 CGAAGCTTAAGAGGGTCTGAAATG 59.669 45.833 6.67 0.00 0.00 2.32
3511 4150 2.611518 CACGAAGCTTAAGAGGGTCTG 58.388 52.381 6.67 0.00 0.00 3.51
3515 4154 0.744771 GCCCACGAAGCTTAAGAGGG 60.745 60.000 23.62 23.62 38.56 4.30
3520 4159 1.298667 GGAGGCCCACGAAGCTTAA 59.701 57.895 0.00 0.00 0.00 1.85
3656 4300 9.956720 CAACTGACAAACTTCTGATTCTATTTT 57.043 29.630 0.00 0.00 0.00 1.82
3737 4383 2.443958 TGTGTTTGTCACCCAATCCA 57.556 45.000 0.00 0.00 45.61 3.41
3772 4418 1.461897 CTTAACGTTTACTGGCCCACG 59.538 52.381 5.91 3.49 38.62 4.94
3776 4422 0.445043 CGGCTTAACGTTTACTGGCC 59.555 55.000 5.91 12.12 35.33 5.36
3787 4435 4.419280 GTGGAGAGTACTTACGGCTTAAC 58.581 47.826 0.00 0.00 0.00 2.01
3836 4484 3.843027 AGTTCAGGATCCATTCACAGAGT 59.157 43.478 15.82 0.00 0.00 3.24
3871 4519 2.735259 TTCCCTGTTTACTCCTCCCT 57.265 50.000 0.00 0.00 0.00 4.20
3875 4524 2.279173 AGCCATTCCCTGTTTACTCCT 58.721 47.619 0.00 0.00 0.00 3.69
3876 4525 2.808906 AGCCATTCCCTGTTTACTCC 57.191 50.000 0.00 0.00 0.00 3.85
3877 4526 5.468540 AAAAAGCCATTCCCTGTTTACTC 57.531 39.130 0.00 0.00 0.00 2.59
3922 4576 9.171877 AGGCTGAAAGAAGAGATTATTTAGTTG 57.828 33.333 0.00 0.00 34.07 3.16
3950 4604 2.047002 AACCAGCGTTTAACACCTGT 57.953 45.000 10.40 0.00 0.00 4.00
3965 4621 1.011968 CGATCCTCGTTCGCAAACCA 61.012 55.000 0.00 0.00 34.72 3.67
3977 4633 2.168521 TGGTTCAACAGATCCGATCCTC 59.831 50.000 4.67 0.00 0.00 3.71
3998 4654 1.987855 TCAGGTCCGCGATTTCCCT 60.988 57.895 8.23 1.46 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.