Multiple sequence alignment - TraesCS5A01G486900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G486900 chr5A 100.000 2213 0 0 1 2213 657451611 657453823 0.000000e+00 4087
1 TraesCS5A01G486900 chr5D 97.526 1819 36 6 1 1817 512410207 512412018 0.000000e+00 3101
2 TraesCS5A01G486900 chr5D 97.471 1819 36 7 1 1817 512417144 512418954 0.000000e+00 3096
3 TraesCS5A01G486900 chr5D 97.196 1819 42 6 1 1817 503291893 503293704 0.000000e+00 3068
4 TraesCS5A01G486900 chr5D 97.140 1818 42 7 1 1817 6176894 6175086 0.000000e+00 3061
5 TraesCS5A01G486900 chr5D 86.071 280 36 3 1825 2103 529276986 529277263 4.620000e-77 298
6 TraesCS5A01G486900 chr2D 97.305 1818 39 7 1 1817 638424527 638426335 0.000000e+00 3077
7 TraesCS5A01G486900 chr1D 97.140 1818 42 6 1 1817 254435056 254436864 0.000000e+00 3061
8 TraesCS5A01G486900 chr1D 95.600 1818 63 10 1 1817 51871915 51870114 0.000000e+00 2898
9 TraesCS5A01G486900 chr4B 95.872 1817 66 7 1 1815 308679746 308677937 0.000000e+00 2931
10 TraesCS5A01G486900 chr3D 93.454 1818 96 10 1 1817 235618906 235620701 0.000000e+00 2676
11 TraesCS5A01G486900 chr5B 84.198 405 53 6 1816 2213 668131666 668132066 1.240000e-102 383


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G486900 chr5A 657451611 657453823 2212 False 4087 4087 100.000 1 2213 1 chr5A.!!$F1 2212
1 TraesCS5A01G486900 chr5D 512410207 512412018 1811 False 3101 3101 97.526 1 1817 1 chr5D.!!$F2 1816
2 TraesCS5A01G486900 chr5D 512417144 512418954 1810 False 3096 3096 97.471 1 1817 1 chr5D.!!$F3 1816
3 TraesCS5A01G486900 chr5D 503291893 503293704 1811 False 3068 3068 97.196 1 1817 1 chr5D.!!$F1 1816
4 TraesCS5A01G486900 chr5D 6175086 6176894 1808 True 3061 3061 97.140 1 1817 1 chr5D.!!$R1 1816
5 TraesCS5A01G486900 chr2D 638424527 638426335 1808 False 3077 3077 97.305 1 1817 1 chr2D.!!$F1 1816
6 TraesCS5A01G486900 chr1D 254435056 254436864 1808 False 3061 3061 97.140 1 1817 1 chr1D.!!$F1 1816
7 TraesCS5A01G486900 chr1D 51870114 51871915 1801 True 2898 2898 95.600 1 1817 1 chr1D.!!$R1 1816
8 TraesCS5A01G486900 chr4B 308677937 308679746 1809 True 2931 2931 95.872 1 1815 1 chr4B.!!$R1 1814
9 TraesCS5A01G486900 chr3D 235618906 235620701 1795 False 2676 2676 93.454 1 1817 1 chr3D.!!$F1 1816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
213 214 1.568504 ATGACCCACGCTCCTTTAGA 58.431 50.0 0.0 0.0 0.0 2.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 1977 0.106708 AGCGGCAACAGAGAGTTTGA 59.893 50.0 1.45 0.0 38.74 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.672823 CCCACAGGTTTAGGTAAATATCTAAC 57.327 38.462 0.00 0.00 29.16 2.34
213 214 1.568504 ATGACCCACGCTCCTTTAGA 58.431 50.000 0.00 0.00 0.00 2.10
318 319 9.442047 TTCTCATTTTGTTCTAGGATTCTTCTC 57.558 33.333 0.00 0.00 0.00 2.87
581 586 7.278868 ACGTATTCAATAAGCAAAAGGAGAGAG 59.721 37.037 0.00 0.00 0.00 3.20
582 587 7.492669 CGTATTCAATAAGCAAAAGGAGAGAGA 59.507 37.037 0.00 0.00 0.00 3.10
591 596 4.324176 GCAAAAGGAGAGAGAGAGGGATTT 60.324 45.833 0.00 0.00 0.00 2.17
661 666 1.980765 TCAACCACTCAGCCATCTCTT 59.019 47.619 0.00 0.00 0.00 2.85
687 692 7.054124 CACAGCCTAATCCTTATTTTACTCCA 58.946 38.462 0.00 0.00 0.00 3.86
708 713 7.499232 ACTCCAACAAATAGAACATAGCCATAC 59.501 37.037 0.00 0.00 0.00 2.39
824 829 2.612212 CGCTATACCCGCTTGTGAAATT 59.388 45.455 0.00 0.00 0.00 1.82
930 935 5.732331 TGGATTCATGATTAAACCCCTCT 57.268 39.130 0.00 0.00 0.00 3.69
1182 1190 8.772250 TCATTATGGATTGGACTAGTCTTTCTT 58.228 33.333 21.88 7.61 0.00 2.52
1539 1550 3.526931 CTTGCCAAGGAGAAGATACGA 57.473 47.619 0.00 0.00 0.00 3.43
1553 1564 0.742505 ATACGAGTTCGATTCCCGCA 59.257 50.000 8.72 0.00 43.02 5.69
1748 1762 0.394565 AGAACTCGCCAACAGAGCTT 59.605 50.000 0.00 0.00 39.23 3.74
1781 1795 6.829298 TGGGTATTAACTGAGACAAACAACAA 59.171 34.615 0.00 0.00 0.00 2.83
1817 1831 2.012236 AGGGAAGGGAGAGGTAGACTT 58.988 52.381 0.00 0.00 0.00 3.01
1818 1832 2.023791 AGGGAAGGGAGAGGTAGACTTC 60.024 54.545 0.00 0.00 37.43 3.01
1819 1833 2.292323 GGGAAGGGAGAGGTAGACTTCA 60.292 54.545 0.00 0.00 39.33 3.02
1820 1834 3.631346 GGGAAGGGAGAGGTAGACTTCAT 60.631 52.174 0.00 0.00 39.33 2.57
1821 1835 4.034410 GGAAGGGAGAGGTAGACTTCATT 58.966 47.826 0.00 0.00 39.33 2.57
1822 1836 5.209659 GGAAGGGAGAGGTAGACTTCATTA 58.790 45.833 0.00 0.00 39.33 1.90
1823 1837 5.661759 GGAAGGGAGAGGTAGACTTCATTAA 59.338 44.000 0.00 0.00 39.33 1.40
1824 1838 6.183360 GGAAGGGAGAGGTAGACTTCATTAAG 60.183 46.154 0.00 0.00 39.33 1.85
1850 1864 9.717892 GTCCAACGAATTTTATTCTCTTTATCC 57.282 33.333 0.00 0.00 0.00 2.59
1851 1865 9.456147 TCCAACGAATTTTATTCTCTTTATCCA 57.544 29.630 0.00 0.00 0.00 3.41
1864 1878 7.733773 TCTCTTTATCCATCTAACTTCACCA 57.266 36.000 0.00 0.00 0.00 4.17
1865 1879 8.146053 TCTCTTTATCCATCTAACTTCACCAA 57.854 34.615 0.00 0.00 0.00 3.67
1866 1880 8.602424 TCTCTTTATCCATCTAACTTCACCAAA 58.398 33.333 0.00 0.00 0.00 3.28
1867 1881 9.231297 CTCTTTATCCATCTAACTTCACCAAAA 57.769 33.333 0.00 0.00 0.00 2.44
1868 1882 9.753674 TCTTTATCCATCTAACTTCACCAAAAT 57.246 29.630 0.00 0.00 0.00 1.82
1870 1884 9.753674 TTTATCCATCTAACTTCACCAAAATCT 57.246 29.630 0.00 0.00 0.00 2.40
1872 1886 8.738645 ATCCATCTAACTTCACCAAAATCTAC 57.261 34.615 0.00 0.00 0.00 2.59
1873 1887 7.918076 TCCATCTAACTTCACCAAAATCTACT 58.082 34.615 0.00 0.00 0.00 2.57
1874 1888 9.042450 TCCATCTAACTTCACCAAAATCTACTA 57.958 33.333 0.00 0.00 0.00 1.82
1875 1889 9.667107 CCATCTAACTTCACCAAAATCTACTAA 57.333 33.333 0.00 0.00 0.00 2.24
1877 1891 9.668497 ATCTAACTTCACCAAAATCTACTAACC 57.332 33.333 0.00 0.00 0.00 2.85
1878 1892 8.653191 TCTAACTTCACCAAAATCTACTAACCA 58.347 33.333 0.00 0.00 0.00 3.67
1879 1893 9.449719 CTAACTTCACCAAAATCTACTAACCAT 57.550 33.333 0.00 0.00 0.00 3.55
1880 1894 8.706322 AACTTCACCAAAATCTACTAACCATT 57.294 30.769 0.00 0.00 0.00 3.16
1881 1895 8.110860 ACTTCACCAAAATCTACTAACCATTG 57.889 34.615 0.00 0.00 0.00 2.82
1882 1896 7.942341 ACTTCACCAAAATCTACTAACCATTGA 59.058 33.333 0.00 0.00 0.00 2.57
1883 1897 7.921786 TCACCAAAATCTACTAACCATTGAG 57.078 36.000 0.00 0.00 0.00 3.02
1884 1898 6.374333 TCACCAAAATCTACTAACCATTGAGC 59.626 38.462 0.00 0.00 0.00 4.26
1885 1899 6.375455 CACCAAAATCTACTAACCATTGAGCT 59.625 38.462 0.00 0.00 0.00 4.09
1886 1900 6.375455 ACCAAAATCTACTAACCATTGAGCTG 59.625 38.462 0.00 0.00 0.00 4.24
1887 1901 6.599244 CCAAAATCTACTAACCATTGAGCTGA 59.401 38.462 0.00 0.00 0.00 4.26
1888 1902 7.201679 CCAAAATCTACTAACCATTGAGCTGAG 60.202 40.741 0.00 0.00 0.00 3.35
1889 1903 4.392921 TCTACTAACCATTGAGCTGAGC 57.607 45.455 0.00 0.00 0.00 4.26
1890 1904 4.026744 TCTACTAACCATTGAGCTGAGCT 58.973 43.478 6.69 6.69 43.88 4.09
1900 1914 3.529252 AGCTGAGCTCATCACACAC 57.471 52.632 18.63 1.24 30.62 3.82
1901 1915 0.683412 AGCTGAGCTCATCACACACA 59.317 50.000 18.63 0.00 30.62 3.72
1902 1916 1.077123 GCTGAGCTCATCACACACAG 58.923 55.000 18.63 2.96 33.22 3.66
1903 1917 1.337541 GCTGAGCTCATCACACACAGA 60.338 52.381 18.63 0.00 33.22 3.41
1904 1918 2.677325 GCTGAGCTCATCACACACAGAT 60.677 50.000 18.63 0.00 33.22 2.90
1905 1919 3.597255 CTGAGCTCATCACACACAGATT 58.403 45.455 18.63 0.00 33.22 2.40
1906 1920 4.001652 CTGAGCTCATCACACACAGATTT 58.998 43.478 18.63 0.00 33.22 2.17
1907 1921 3.999001 TGAGCTCATCACACACAGATTTC 59.001 43.478 13.74 0.00 31.12 2.17
1908 1922 2.998670 AGCTCATCACACACAGATTTCG 59.001 45.455 0.00 0.00 0.00 3.46
1909 1923 2.738846 GCTCATCACACACAGATTTCGT 59.261 45.455 0.00 0.00 0.00 3.85
1910 1924 3.424039 GCTCATCACACACAGATTTCGTG 60.424 47.826 0.00 0.00 40.32 4.35
1911 1925 3.066380 TCATCACACACAGATTTCGTGG 58.934 45.455 0.00 0.00 38.74 4.94
1912 1926 2.613026 TCACACACAGATTTCGTGGT 57.387 45.000 0.00 0.00 38.74 4.16
1913 1927 3.737032 TCACACACAGATTTCGTGGTA 57.263 42.857 0.00 0.00 38.74 3.25
1914 1928 4.265904 TCACACACAGATTTCGTGGTAT 57.734 40.909 0.00 0.00 38.74 2.73
1915 1929 4.242475 TCACACACAGATTTCGTGGTATC 58.758 43.478 0.00 0.00 38.74 2.24
1916 1930 3.993736 CACACACAGATTTCGTGGTATCA 59.006 43.478 0.00 0.00 38.74 2.15
1917 1931 4.450757 CACACACAGATTTCGTGGTATCAA 59.549 41.667 0.00 0.00 38.74 2.57
1918 1932 5.049749 CACACACAGATTTCGTGGTATCAAA 60.050 40.000 0.00 0.00 38.74 2.69
1919 1933 5.179368 ACACACAGATTTCGTGGTATCAAAG 59.821 40.000 0.00 0.00 38.74 2.77
1920 1934 4.154195 ACACAGATTTCGTGGTATCAAAGC 59.846 41.667 0.00 0.00 38.74 3.51
1921 1935 4.154015 CACAGATTTCGTGGTATCAAAGCA 59.846 41.667 0.00 0.00 0.00 3.91
1922 1936 4.943705 ACAGATTTCGTGGTATCAAAGCAT 59.056 37.500 0.00 0.00 38.03 3.79
1923 1937 5.163723 ACAGATTTCGTGGTATCAAAGCATG 60.164 40.000 0.00 0.00 42.79 4.06
1924 1938 4.943705 AGATTTCGTGGTATCAAAGCATGT 59.056 37.500 0.00 0.00 42.19 3.21
1925 1939 4.678509 TTTCGTGGTATCAAAGCATGTC 57.321 40.909 0.00 0.00 42.19 3.06
1926 1940 3.326836 TCGTGGTATCAAAGCATGTCA 57.673 42.857 0.00 0.00 42.19 3.58
1927 1941 3.872696 TCGTGGTATCAAAGCATGTCAT 58.127 40.909 0.00 0.00 42.19 3.06
1928 1942 5.017294 TCGTGGTATCAAAGCATGTCATA 57.983 39.130 0.00 0.00 42.19 2.15
1929 1943 5.049828 TCGTGGTATCAAAGCATGTCATAG 58.950 41.667 0.00 0.00 42.19 2.23
1930 1944 5.049828 CGTGGTATCAAAGCATGTCATAGA 58.950 41.667 0.00 0.00 38.03 1.98
1931 1945 5.176406 CGTGGTATCAAAGCATGTCATAGAG 59.824 44.000 0.00 0.00 38.03 2.43
1932 1946 6.051717 GTGGTATCAAAGCATGTCATAGAGT 58.948 40.000 0.00 0.00 38.03 3.24
1933 1947 7.210174 GTGGTATCAAAGCATGTCATAGAGTA 58.790 38.462 0.00 0.00 38.03 2.59
1934 1948 7.383572 GTGGTATCAAAGCATGTCATAGAGTAG 59.616 40.741 0.00 0.00 38.03 2.57
1935 1949 7.287696 TGGTATCAAAGCATGTCATAGAGTAGA 59.712 37.037 0.00 0.00 0.00 2.59
1936 1950 7.596995 GGTATCAAAGCATGTCATAGAGTAGAC 59.403 40.741 0.00 0.00 35.37 2.59
1938 1952 6.567959 TCAAAGCATGTCATAGAGTAGACAG 58.432 40.000 0.00 0.00 46.70 3.51
1939 1953 6.153510 TCAAAGCATGTCATAGAGTAGACAGT 59.846 38.462 0.00 0.00 46.70 3.55
1940 1954 5.512753 AGCATGTCATAGAGTAGACAGTG 57.487 43.478 0.00 0.00 46.70 3.66
1941 1955 5.196695 AGCATGTCATAGAGTAGACAGTGA 58.803 41.667 0.00 0.00 46.70 3.41
1942 1956 5.832595 AGCATGTCATAGAGTAGACAGTGAT 59.167 40.000 0.00 0.00 46.70 3.06
1943 1957 5.919707 GCATGTCATAGAGTAGACAGTGATG 59.080 44.000 0.00 0.00 46.70 3.07
1944 1958 6.460814 GCATGTCATAGAGTAGACAGTGATGT 60.461 42.308 0.00 0.00 46.70 3.06
1945 1959 7.487484 CATGTCATAGAGTAGACAGTGATGTT 58.513 38.462 0.00 0.00 46.70 2.71
1946 1960 7.468141 TGTCATAGAGTAGACAGTGATGTTT 57.532 36.000 0.00 0.00 39.65 2.83
1947 1961 7.896811 TGTCATAGAGTAGACAGTGATGTTTT 58.103 34.615 0.00 0.00 39.65 2.43
1948 1962 7.814587 TGTCATAGAGTAGACAGTGATGTTTTG 59.185 37.037 0.00 0.00 39.65 2.44
1949 1963 7.815068 GTCATAGAGTAGACAGTGATGTTTTGT 59.185 37.037 0.00 0.00 34.93 2.83
1950 1964 7.814587 TCATAGAGTAGACAGTGATGTTTTGTG 59.185 37.037 0.00 0.00 0.00 3.33
1951 1965 4.752101 AGAGTAGACAGTGATGTTTTGTGC 59.248 41.667 0.00 0.00 0.00 4.57
1952 1966 4.708177 AGTAGACAGTGATGTTTTGTGCT 58.292 39.130 0.00 0.00 0.00 4.40
1953 1967 3.976793 AGACAGTGATGTTTTGTGCTG 57.023 42.857 0.00 0.00 0.00 4.41
1954 1968 2.033801 AGACAGTGATGTTTTGTGCTGC 59.966 45.455 0.00 0.00 0.00 5.25
1955 1969 2.026641 ACAGTGATGTTTTGTGCTGCT 58.973 42.857 0.00 0.00 0.00 4.24
1956 1970 3.213506 ACAGTGATGTTTTGTGCTGCTA 58.786 40.909 0.00 0.00 0.00 3.49
1957 1971 3.003689 ACAGTGATGTTTTGTGCTGCTAC 59.996 43.478 0.00 0.00 0.00 3.58
1958 1972 3.251729 CAGTGATGTTTTGTGCTGCTACT 59.748 43.478 0.00 0.00 0.00 2.57
1959 1973 3.885297 AGTGATGTTTTGTGCTGCTACTT 59.115 39.130 0.00 0.00 0.00 2.24
1960 1974 4.339247 AGTGATGTTTTGTGCTGCTACTTT 59.661 37.500 0.00 0.00 0.00 2.66
1961 1975 5.530915 AGTGATGTTTTGTGCTGCTACTTTA 59.469 36.000 0.00 0.00 0.00 1.85
1962 1976 5.853282 GTGATGTTTTGTGCTGCTACTTTAG 59.147 40.000 0.00 0.00 0.00 1.85
1963 1977 5.530915 TGATGTTTTGTGCTGCTACTTTAGT 59.469 36.000 0.00 0.00 0.00 2.24
1964 1978 5.418310 TGTTTTGTGCTGCTACTTTAGTC 57.582 39.130 0.00 0.00 0.00 2.59
1965 1979 4.878971 TGTTTTGTGCTGCTACTTTAGTCA 59.121 37.500 0.00 0.00 0.00 3.41
1966 1980 5.355630 TGTTTTGTGCTGCTACTTTAGTCAA 59.644 36.000 0.00 0.00 0.00 3.18
1967 1981 6.127869 TGTTTTGTGCTGCTACTTTAGTCAAA 60.128 34.615 0.00 0.00 0.00 2.69
1968 1982 5.418310 TTGTGCTGCTACTTTAGTCAAAC 57.582 39.130 0.00 0.00 0.00 2.93
1969 1983 4.703897 TGTGCTGCTACTTTAGTCAAACT 58.296 39.130 0.00 0.00 0.00 2.66
1970 1984 4.750098 TGTGCTGCTACTTTAGTCAAACTC 59.250 41.667 0.00 0.00 0.00 3.01
1971 1985 4.991687 GTGCTGCTACTTTAGTCAAACTCT 59.008 41.667 0.00 0.00 0.00 3.24
1972 1986 5.119434 GTGCTGCTACTTTAGTCAAACTCTC 59.881 44.000 0.00 0.00 0.00 3.20
1973 1987 5.011125 TGCTGCTACTTTAGTCAAACTCTCT 59.989 40.000 0.00 0.00 0.00 3.10
1974 1988 5.347364 GCTGCTACTTTAGTCAAACTCTCTG 59.653 44.000 0.00 0.00 0.00 3.35
1975 1989 6.406692 TGCTACTTTAGTCAAACTCTCTGT 57.593 37.500 0.00 0.00 0.00 3.41
1976 1990 6.817184 TGCTACTTTAGTCAAACTCTCTGTT 58.183 36.000 0.00 0.00 41.29 3.16
1977 1991 6.701841 TGCTACTTTAGTCAAACTCTCTGTTG 59.298 38.462 0.00 0.00 39.13 3.33
1978 1992 5.993106 ACTTTAGTCAAACTCTCTGTTGC 57.007 39.130 0.00 0.00 39.13 4.17
1979 1993 4.816925 ACTTTAGTCAAACTCTCTGTTGCC 59.183 41.667 0.00 0.00 39.13 4.52
1980 1994 1.871080 AGTCAAACTCTCTGTTGCCG 58.129 50.000 0.00 0.00 39.13 5.69
1981 1995 0.235926 GTCAAACTCTCTGTTGCCGC 59.764 55.000 0.00 0.00 39.13 6.53
1982 1996 0.106708 TCAAACTCTCTGTTGCCGCT 59.893 50.000 0.00 0.00 39.13 5.52
1983 1997 0.947244 CAAACTCTCTGTTGCCGCTT 59.053 50.000 0.00 0.00 39.13 4.68
1984 1998 1.334869 CAAACTCTCTGTTGCCGCTTT 59.665 47.619 0.00 0.00 39.13 3.51
1985 1999 2.543777 AACTCTCTGTTGCCGCTTTA 57.456 45.000 0.00 0.00 37.52 1.85
1986 2000 2.086054 ACTCTCTGTTGCCGCTTTAG 57.914 50.000 0.00 0.00 0.00 1.85
1987 2001 1.618837 ACTCTCTGTTGCCGCTTTAGA 59.381 47.619 0.00 0.00 0.00 2.10
1988 2002 2.234908 ACTCTCTGTTGCCGCTTTAGAT 59.765 45.455 0.00 0.00 0.00 1.98
1989 2003 3.447586 ACTCTCTGTTGCCGCTTTAGATA 59.552 43.478 0.00 0.00 0.00 1.98
1990 2004 4.046938 TCTCTGTTGCCGCTTTAGATAG 57.953 45.455 0.00 0.00 0.00 2.08
1991 2005 3.447586 TCTCTGTTGCCGCTTTAGATAGT 59.552 43.478 0.00 0.00 0.00 2.12
1992 2006 4.643334 TCTCTGTTGCCGCTTTAGATAGTA 59.357 41.667 0.00 0.00 0.00 1.82
1993 2007 5.302059 TCTCTGTTGCCGCTTTAGATAGTAT 59.698 40.000 0.00 0.00 0.00 2.12
1994 2008 5.914033 TCTGTTGCCGCTTTAGATAGTATT 58.086 37.500 0.00 0.00 0.00 1.89
1995 2009 6.346096 TCTGTTGCCGCTTTAGATAGTATTT 58.654 36.000 0.00 0.00 0.00 1.40
1996 2010 6.821665 TCTGTTGCCGCTTTAGATAGTATTTT 59.178 34.615 0.00 0.00 0.00 1.82
1997 2011 7.335924 TCTGTTGCCGCTTTAGATAGTATTTTT 59.664 33.333 0.00 0.00 0.00 1.94
2013 2027 3.831651 TTTTTCCTTCCGGCCTTCA 57.168 47.368 0.00 0.00 0.00 3.02
2014 2028 2.074729 TTTTTCCTTCCGGCCTTCAA 57.925 45.000 0.00 0.00 0.00 2.69
2015 2029 2.302587 TTTTCCTTCCGGCCTTCAAT 57.697 45.000 0.00 0.00 0.00 2.57
2016 2030 1.834188 TTTCCTTCCGGCCTTCAATC 58.166 50.000 0.00 0.00 0.00 2.67
2017 2031 0.991920 TTCCTTCCGGCCTTCAATCT 59.008 50.000 0.00 0.00 0.00 2.40
2018 2032 0.991920 TCCTTCCGGCCTTCAATCTT 59.008 50.000 0.00 0.00 0.00 2.40
2019 2033 2.193127 TCCTTCCGGCCTTCAATCTTA 58.807 47.619 0.00 0.00 0.00 2.10
2020 2034 2.777692 TCCTTCCGGCCTTCAATCTTAT 59.222 45.455 0.00 0.00 0.00 1.73
2021 2035 3.202151 TCCTTCCGGCCTTCAATCTTATT 59.798 43.478 0.00 0.00 0.00 1.40
2022 2036 3.565902 CCTTCCGGCCTTCAATCTTATTC 59.434 47.826 0.00 0.00 0.00 1.75
2023 2037 3.208747 TCCGGCCTTCAATCTTATTCC 57.791 47.619 0.00 0.00 0.00 3.01
2024 2038 1.873591 CCGGCCTTCAATCTTATTCCG 59.126 52.381 0.00 0.00 35.80 4.30
2025 2039 2.561569 CGGCCTTCAATCTTATTCCGT 58.438 47.619 0.00 0.00 0.00 4.69
2026 2040 3.493699 CCGGCCTTCAATCTTATTCCGTA 60.494 47.826 0.00 0.00 34.38 4.02
2027 2041 3.493503 CGGCCTTCAATCTTATTCCGTAC 59.506 47.826 0.00 0.00 0.00 3.67
2028 2042 3.813724 GGCCTTCAATCTTATTCCGTACC 59.186 47.826 0.00 0.00 0.00 3.34
2029 2043 4.444449 GGCCTTCAATCTTATTCCGTACCT 60.444 45.833 0.00 0.00 0.00 3.08
2030 2044 5.123936 GCCTTCAATCTTATTCCGTACCTT 58.876 41.667 0.00 0.00 0.00 3.50
2031 2045 6.285990 GCCTTCAATCTTATTCCGTACCTTA 58.714 40.000 0.00 0.00 0.00 2.69
2032 2046 6.935208 GCCTTCAATCTTATTCCGTACCTTAT 59.065 38.462 0.00 0.00 0.00 1.73
2033 2047 8.092687 GCCTTCAATCTTATTCCGTACCTTATA 58.907 37.037 0.00 0.00 0.00 0.98
2034 2048 9.420551 CCTTCAATCTTATTCCGTACCTTATAC 57.579 37.037 0.00 0.00 0.00 1.47
2038 2052 9.976511 CAATCTTATTCCGTACCTTATACTTCA 57.023 33.333 0.00 0.00 0.00 3.02
2056 2070 6.946229 ACTTCATATATTATTGTCGTCGGC 57.054 37.500 0.00 0.00 0.00 5.54
2057 2071 6.452242 ACTTCATATATTATTGTCGTCGGCA 58.548 36.000 0.00 0.00 0.00 5.69
2058 2072 6.926826 ACTTCATATATTATTGTCGTCGGCAA 59.073 34.615 15.56 15.56 0.00 4.52
2059 2073 7.602644 ACTTCATATATTATTGTCGTCGGCAAT 59.397 33.333 26.51 26.51 39.55 3.56
2060 2074 8.989653 TTCATATATTATTGTCGTCGGCAATA 57.010 30.769 24.48 24.48 37.65 1.90
2061 2075 8.628882 TCATATATTATTGTCGTCGGCAATAG 57.371 34.615 26.10 16.56 39.19 1.73
2062 2076 8.248253 TCATATATTATTGTCGTCGGCAATAGT 58.752 33.333 26.10 25.40 39.19 2.12
2063 2077 8.869897 CATATATTATTGTCGTCGGCAATAGTT 58.130 33.333 25.99 20.80 39.19 2.24
2064 2078 4.850859 TTATTGTCGTCGGCAATAGTTG 57.149 40.909 26.10 0.00 39.19 3.16
2077 2091 4.536364 CAATAGTTGCCGTTCTGGTATG 57.464 45.455 0.00 0.00 41.21 2.39
2078 2092 2.684001 TAGTTGCCGTTCTGGTATGG 57.316 50.000 0.00 0.00 41.21 2.74
2079 2093 0.690762 AGTTGCCGTTCTGGTATGGT 59.309 50.000 0.00 0.00 41.21 3.55
2080 2094 0.802494 GTTGCCGTTCTGGTATGGTG 59.198 55.000 0.00 0.00 41.21 4.17
2081 2095 0.958382 TTGCCGTTCTGGTATGGTGC 60.958 55.000 0.00 0.00 41.21 5.01
2082 2096 2.461110 GCCGTTCTGGTATGGTGCG 61.461 63.158 0.00 0.00 41.21 5.34
2083 2097 2.461110 CCGTTCTGGTATGGTGCGC 61.461 63.158 0.00 0.00 0.00 6.09
2084 2098 1.447838 CGTTCTGGTATGGTGCGCT 60.448 57.895 9.73 0.00 0.00 5.92
2085 2099 1.695893 CGTTCTGGTATGGTGCGCTG 61.696 60.000 9.73 0.00 0.00 5.18
2086 2100 1.078497 TTCTGGTATGGTGCGCTGG 60.078 57.895 9.73 0.00 0.00 4.85
2087 2101 1.836999 TTCTGGTATGGTGCGCTGGT 61.837 55.000 9.73 0.00 0.00 4.00
2088 2102 1.377202 CTGGTATGGTGCGCTGGTT 60.377 57.895 9.73 0.00 0.00 3.67
2089 2103 0.107897 CTGGTATGGTGCGCTGGTTA 60.108 55.000 9.73 0.00 0.00 2.85
2090 2104 0.544223 TGGTATGGTGCGCTGGTTAT 59.456 50.000 9.73 0.00 0.00 1.89
2091 2105 1.065053 TGGTATGGTGCGCTGGTTATT 60.065 47.619 9.73 0.00 0.00 1.40
2092 2106 2.021457 GGTATGGTGCGCTGGTTATTT 58.979 47.619 9.73 0.00 0.00 1.40
2093 2107 2.223479 GGTATGGTGCGCTGGTTATTTG 60.223 50.000 9.73 0.00 0.00 2.32
2094 2108 0.817013 ATGGTGCGCTGGTTATTTGG 59.183 50.000 9.73 0.00 0.00 3.28
2095 2109 1.247419 TGGTGCGCTGGTTATTTGGG 61.247 55.000 9.73 0.00 0.00 4.12
2096 2110 1.510844 GTGCGCTGGTTATTTGGGG 59.489 57.895 9.73 0.00 0.00 4.96
2097 2111 1.075836 TGCGCTGGTTATTTGGGGT 59.924 52.632 9.73 0.00 0.00 4.95
2098 2112 0.963355 TGCGCTGGTTATTTGGGGTC 60.963 55.000 9.73 0.00 0.00 4.46
2099 2113 0.679960 GCGCTGGTTATTTGGGGTCT 60.680 55.000 0.00 0.00 0.00 3.85
2100 2114 1.834188 CGCTGGTTATTTGGGGTCTT 58.166 50.000 0.00 0.00 0.00 3.01
2101 2115 2.942306 GCGCTGGTTATTTGGGGTCTTA 60.942 50.000 0.00 0.00 0.00 2.10
2102 2116 2.943033 CGCTGGTTATTTGGGGTCTTAG 59.057 50.000 0.00 0.00 0.00 2.18
2103 2117 2.688446 GCTGGTTATTTGGGGTCTTAGC 59.312 50.000 0.00 0.00 0.00 3.09
2104 2118 3.876156 GCTGGTTATTTGGGGTCTTAGCA 60.876 47.826 0.00 0.00 0.00 3.49
2105 2119 3.692690 TGGTTATTTGGGGTCTTAGCAC 58.307 45.455 0.00 0.00 0.00 4.40
2106 2120 2.681344 GGTTATTTGGGGTCTTAGCACG 59.319 50.000 0.00 0.00 0.00 5.34
2107 2121 3.602483 GTTATTTGGGGTCTTAGCACGA 58.398 45.455 0.00 0.00 0.00 4.35
2108 2122 2.109425 ATTTGGGGTCTTAGCACGAC 57.891 50.000 0.00 0.00 0.00 4.34
2109 2123 0.320073 TTTGGGGTCTTAGCACGACG 60.320 55.000 0.00 0.00 32.24 5.12
2110 2124 1.180456 TTGGGGTCTTAGCACGACGA 61.180 55.000 0.00 0.00 32.24 4.20
2111 2125 0.968901 TGGGGTCTTAGCACGACGAT 60.969 55.000 0.00 0.00 32.24 3.73
2112 2126 0.175073 GGGGTCTTAGCACGACGATT 59.825 55.000 0.00 0.00 32.24 3.34
2113 2127 1.405121 GGGGTCTTAGCACGACGATTT 60.405 52.381 0.00 0.00 32.24 2.17
2114 2128 2.159198 GGGGTCTTAGCACGACGATTTA 60.159 50.000 0.00 0.00 32.24 1.40
2115 2129 2.856557 GGGTCTTAGCACGACGATTTAC 59.143 50.000 0.00 0.00 32.24 2.01
2116 2130 3.428589 GGGTCTTAGCACGACGATTTACT 60.429 47.826 0.00 0.00 32.24 2.24
2117 2131 3.546670 GGTCTTAGCACGACGATTTACTG 59.453 47.826 0.00 0.00 32.24 2.74
2118 2132 4.409570 GTCTTAGCACGACGATTTACTGA 58.590 43.478 0.00 0.00 0.00 3.41
2119 2133 4.262510 GTCTTAGCACGACGATTTACTGAC 59.737 45.833 0.00 0.00 0.00 3.51
2120 2134 4.155462 TCTTAGCACGACGATTTACTGACT 59.845 41.667 0.00 0.00 0.00 3.41
2121 2135 5.352293 TCTTAGCACGACGATTTACTGACTA 59.648 40.000 0.00 0.00 0.00 2.59
2122 2136 4.634184 AGCACGACGATTTACTGACTAT 57.366 40.909 0.00 0.00 0.00 2.12
2123 2137 4.599047 AGCACGACGATTTACTGACTATC 58.401 43.478 0.00 0.00 0.00 2.08
2124 2138 4.335874 AGCACGACGATTTACTGACTATCT 59.664 41.667 0.00 0.00 0.00 1.98
2125 2139 5.526479 AGCACGACGATTTACTGACTATCTA 59.474 40.000 0.00 0.00 0.00 1.98
2126 2140 5.620417 GCACGACGATTTACTGACTATCTAC 59.380 44.000 0.00 0.00 0.00 2.59
2127 2141 6.134730 CACGACGATTTACTGACTATCTACC 58.865 44.000 0.00 0.00 0.00 3.18
2128 2142 5.819379 ACGACGATTTACTGACTATCTACCA 59.181 40.000 0.00 0.00 0.00 3.25
2129 2143 6.317140 ACGACGATTTACTGACTATCTACCAA 59.683 38.462 0.00 0.00 0.00 3.67
2130 2144 7.148188 ACGACGATTTACTGACTATCTACCAAA 60.148 37.037 0.00 0.00 0.00 3.28
2131 2145 7.699391 CGACGATTTACTGACTATCTACCAAAA 59.301 37.037 0.00 0.00 0.00 2.44
2132 2146 8.699283 ACGATTTACTGACTATCTACCAAAAC 57.301 34.615 0.00 0.00 0.00 2.43
2133 2147 8.308931 ACGATTTACTGACTATCTACCAAAACA 58.691 33.333 0.00 0.00 0.00 2.83
2134 2148 9.146984 CGATTTACTGACTATCTACCAAAACAA 57.853 33.333 0.00 0.00 0.00 2.83
2136 2150 8.842358 TTTACTGACTATCTACCAAAACAAGG 57.158 34.615 0.00 0.00 0.00 3.61
2137 2151 6.435292 ACTGACTATCTACCAAAACAAGGT 57.565 37.500 0.00 0.00 43.14 3.50
2138 2152 6.838382 ACTGACTATCTACCAAAACAAGGTT 58.162 36.000 0.00 0.00 40.54 3.50
2139 2153 6.935208 ACTGACTATCTACCAAAACAAGGTTC 59.065 38.462 0.00 0.00 40.54 3.62
2140 2154 5.929992 TGACTATCTACCAAAACAAGGTTCG 59.070 40.000 0.00 0.00 40.54 3.95
2141 2155 6.105397 ACTATCTACCAAAACAAGGTTCGA 57.895 37.500 0.00 0.00 40.54 3.71
2142 2156 6.708285 ACTATCTACCAAAACAAGGTTCGAT 58.292 36.000 0.00 0.00 40.54 3.59
2143 2157 6.817140 ACTATCTACCAAAACAAGGTTCGATC 59.183 38.462 0.00 0.00 40.54 3.69
2144 2158 3.991773 TCTACCAAAACAAGGTTCGATCG 59.008 43.478 9.36 9.36 40.54 3.69
2145 2159 2.567985 ACCAAAACAAGGTTCGATCGT 58.432 42.857 15.94 0.00 35.33 3.73
2146 2160 2.546789 ACCAAAACAAGGTTCGATCGTC 59.453 45.455 15.94 9.54 35.33 4.20
2147 2161 2.806244 CCAAAACAAGGTTCGATCGTCT 59.194 45.455 15.94 8.63 0.00 4.18
2148 2162 3.250040 CCAAAACAAGGTTCGATCGTCTT 59.750 43.478 15.94 13.88 0.00 3.01
2149 2163 4.455124 CAAAACAAGGTTCGATCGTCTTC 58.545 43.478 15.94 3.89 0.00 2.87
2150 2164 1.978542 ACAAGGTTCGATCGTCTTCG 58.021 50.000 15.94 13.01 40.46 3.79
2151 2165 1.268899 ACAAGGTTCGATCGTCTTCGT 59.731 47.619 15.94 13.50 40.03 3.85
2152 2166 1.649171 CAAGGTTCGATCGTCTTCGTG 59.351 52.381 15.94 8.22 40.03 4.35
2153 2167 1.162698 AGGTTCGATCGTCTTCGTGA 58.837 50.000 15.94 0.00 40.03 4.35
2154 2168 1.130749 AGGTTCGATCGTCTTCGTGAG 59.869 52.381 15.94 0.00 40.03 3.51
2155 2169 1.536149 GTTCGATCGTCTTCGTGAGG 58.464 55.000 15.94 0.00 40.03 3.86
2156 2170 0.450583 TTCGATCGTCTTCGTGAGGG 59.549 55.000 15.94 0.00 40.03 4.30
2157 2171 0.392060 TCGATCGTCTTCGTGAGGGA 60.392 55.000 15.94 0.00 40.03 4.20
2158 2172 0.663688 CGATCGTCTTCGTGAGGGAT 59.336 55.000 7.03 0.00 38.33 3.85
2159 2173 1.065701 CGATCGTCTTCGTGAGGGATT 59.934 52.381 7.03 0.00 38.33 3.01
2160 2174 2.464865 GATCGTCTTCGTGAGGGATTG 58.535 52.381 0.00 0.00 38.33 2.67
2161 2175 0.530744 TCGTCTTCGTGAGGGATTGG 59.469 55.000 0.00 0.00 38.33 3.16
2162 2176 1.084370 CGTCTTCGTGAGGGATTGGC 61.084 60.000 0.00 0.00 0.00 4.52
2163 2177 1.084370 GTCTTCGTGAGGGATTGGCG 61.084 60.000 0.00 0.00 0.00 5.69
2164 2178 1.218047 CTTCGTGAGGGATTGGCGA 59.782 57.895 0.00 0.00 0.00 5.54
2165 2179 0.391130 CTTCGTGAGGGATTGGCGAA 60.391 55.000 0.00 0.00 38.90 4.70
2166 2180 0.391130 TTCGTGAGGGATTGGCGAAG 60.391 55.000 0.00 0.00 36.78 3.79
2167 2181 1.218047 CGTGAGGGATTGGCGAAGA 59.782 57.895 0.00 0.00 0.00 2.87
2168 2182 1.084370 CGTGAGGGATTGGCGAAGAC 61.084 60.000 0.00 0.00 0.00 3.01
2169 2183 1.084370 GTGAGGGATTGGCGAAGACG 61.084 60.000 0.00 0.00 41.59 4.18
2170 2184 1.254975 TGAGGGATTGGCGAAGACGA 61.255 55.000 0.00 0.00 41.59 4.20
2171 2185 0.806492 GAGGGATTGGCGAAGACGAC 60.806 60.000 0.00 0.00 41.59 4.34
2178 2192 2.167918 GCGAAGACGACAACACGC 59.832 61.111 0.00 0.00 42.66 5.34
2179 2193 2.844146 CGAAGACGACAACACGCC 59.156 61.111 0.00 0.00 42.66 5.68
2180 2194 1.660575 CGAAGACGACAACACGCCT 60.661 57.895 0.00 0.00 42.66 5.52
2181 2195 1.213094 CGAAGACGACAACACGCCTT 61.213 55.000 0.00 0.00 42.66 4.35
2182 2196 0.507358 GAAGACGACAACACGCCTTC 59.493 55.000 0.00 0.00 42.85 3.46
2183 2197 0.179094 AAGACGACAACACGCCTTCA 60.179 50.000 0.00 0.00 31.10 3.02
2184 2198 0.597637 AGACGACAACACGCCTTCAG 60.598 55.000 0.00 0.00 36.70 3.02
2185 2199 2.159272 GACGACAACACGCCTTCAGC 62.159 60.000 0.00 0.00 36.70 4.26
2200 2214 6.944557 GCCTTCAGCGTTAATGTAATTTTT 57.055 33.333 0.00 0.00 37.87 1.94
2201 2215 6.751259 GCCTTCAGCGTTAATGTAATTTTTG 58.249 36.000 0.00 0.00 37.87 2.44
2202 2216 6.364976 GCCTTCAGCGTTAATGTAATTTTTGT 59.635 34.615 0.00 0.00 37.87 2.83
2203 2217 7.095816 GCCTTCAGCGTTAATGTAATTTTTGTT 60.096 33.333 0.00 0.00 37.87 2.83
2204 2218 9.400638 CCTTCAGCGTTAATGTAATTTTTGTTA 57.599 29.630 0.00 0.00 37.87 2.41
2206 2220 9.953697 TTCAGCGTTAATGTAATTTTTGTTACT 57.046 25.926 0.00 0.00 37.87 2.24
2207 2221 9.953697 TCAGCGTTAATGTAATTTTTGTTACTT 57.046 25.926 0.00 0.00 37.87 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 2.203907 CAAACCATTGGGGCCCCA 60.204 61.111 41.29 41.29 45.63 4.96
213 214 3.418047 CCACCCACGGAATTTAAAGAGT 58.582 45.455 0.00 0.00 0.00 3.24
373 374 2.536365 TCACGATCGATTCCCTTTTCG 58.464 47.619 24.34 0.00 36.72 3.46
591 596 4.515028 TCTAGGAACTATCGAGGGTTCA 57.485 45.455 24.56 11.66 41.70 3.18
635 640 1.630369 TGGCTGAGTGGTTGATAGCTT 59.370 47.619 0.00 0.00 34.89 3.74
661 666 7.092623 TGGAGTAAAATAAGGATTAGGCTGTGA 60.093 37.037 0.00 0.00 31.76 3.58
950 958 7.899648 TCCCTCACTTAAACCAAAATTGTAA 57.100 32.000 0.00 0.00 0.00 2.41
951 959 7.726291 TGATCCCTCACTTAAACCAAAATTGTA 59.274 33.333 0.00 0.00 0.00 2.41
1182 1190 9.539825 GAAATGAGAGAATTCAGAATAGCTACA 57.460 33.333 8.44 2.90 0.00 2.74
1539 1550 1.153549 GAGCTGCGGGAATCGAACT 60.154 57.895 0.00 0.00 42.43 3.01
1658 1670 6.460103 AGGGTAAGATAGTAAGGGATACGA 57.540 41.667 0.00 0.00 39.62 3.43
1748 1762 8.698973 TGTCTCAGTTAATACCCAATTTTTGA 57.301 30.769 0.00 0.00 0.00 2.69
1824 1838 9.717892 GGATAAAGAGAATAAAATTCGTTGGAC 57.282 33.333 0.00 0.00 0.00 4.02
1825 1839 9.456147 TGGATAAAGAGAATAAAATTCGTTGGA 57.544 29.630 0.00 0.00 0.00 3.53
1838 1852 8.772250 TGGTGAAGTTAGATGGATAAAGAGAAT 58.228 33.333 0.00 0.00 0.00 2.40
1839 1853 8.146053 TGGTGAAGTTAGATGGATAAAGAGAA 57.854 34.615 0.00 0.00 0.00 2.87
1840 1854 7.733773 TGGTGAAGTTAGATGGATAAAGAGA 57.266 36.000 0.00 0.00 0.00 3.10
1841 1855 8.792830 TTTGGTGAAGTTAGATGGATAAAGAG 57.207 34.615 0.00 0.00 0.00 2.85
1842 1856 9.753674 ATTTTGGTGAAGTTAGATGGATAAAGA 57.246 29.630 0.00 0.00 0.00 2.52
1844 1858 9.753674 AGATTTTGGTGAAGTTAGATGGATAAA 57.246 29.630 0.00 0.00 0.00 1.40
1846 1860 9.832445 GTAGATTTTGGTGAAGTTAGATGGATA 57.168 33.333 0.00 0.00 0.00 2.59
1847 1861 8.552296 AGTAGATTTTGGTGAAGTTAGATGGAT 58.448 33.333 0.00 0.00 0.00 3.41
1848 1862 7.918076 AGTAGATTTTGGTGAAGTTAGATGGA 58.082 34.615 0.00 0.00 0.00 3.41
1849 1863 9.667107 TTAGTAGATTTTGGTGAAGTTAGATGG 57.333 33.333 0.00 0.00 0.00 3.51
1851 1865 9.668497 GGTTAGTAGATTTTGGTGAAGTTAGAT 57.332 33.333 0.00 0.00 0.00 1.98
1852 1866 8.653191 TGGTTAGTAGATTTTGGTGAAGTTAGA 58.347 33.333 0.00 0.00 0.00 2.10
1853 1867 8.842358 TGGTTAGTAGATTTTGGTGAAGTTAG 57.158 34.615 0.00 0.00 0.00 2.34
1854 1868 9.802039 AATGGTTAGTAGATTTTGGTGAAGTTA 57.198 29.630 0.00 0.00 0.00 2.24
1855 1869 8.576442 CAATGGTTAGTAGATTTTGGTGAAGTT 58.424 33.333 0.00 0.00 0.00 2.66
1856 1870 7.942341 TCAATGGTTAGTAGATTTTGGTGAAGT 59.058 33.333 0.00 0.00 0.00 3.01
1857 1871 8.335532 TCAATGGTTAGTAGATTTTGGTGAAG 57.664 34.615 0.00 0.00 0.00 3.02
1858 1872 7.094377 GCTCAATGGTTAGTAGATTTTGGTGAA 60.094 37.037 0.00 0.00 0.00 3.18
1859 1873 6.374333 GCTCAATGGTTAGTAGATTTTGGTGA 59.626 38.462 0.00 0.00 0.00 4.02
1860 1874 6.375455 AGCTCAATGGTTAGTAGATTTTGGTG 59.625 38.462 0.00 0.00 0.00 4.17
1861 1875 6.375455 CAGCTCAATGGTTAGTAGATTTTGGT 59.625 38.462 0.00 0.00 0.00 3.67
1862 1876 6.599244 TCAGCTCAATGGTTAGTAGATTTTGG 59.401 38.462 0.00 0.00 0.00 3.28
1863 1877 7.615582 TCAGCTCAATGGTTAGTAGATTTTG 57.384 36.000 0.00 0.00 0.00 2.44
1864 1878 6.317391 GCTCAGCTCAATGGTTAGTAGATTTT 59.683 38.462 0.00 0.00 0.00 1.82
1865 1879 5.819901 GCTCAGCTCAATGGTTAGTAGATTT 59.180 40.000 0.00 0.00 0.00 2.17
1866 1880 5.130145 AGCTCAGCTCAATGGTTAGTAGATT 59.870 40.000 0.00 0.00 30.62 2.40
1867 1881 4.653341 AGCTCAGCTCAATGGTTAGTAGAT 59.347 41.667 0.00 0.00 30.62 1.98
1868 1882 4.026744 AGCTCAGCTCAATGGTTAGTAGA 58.973 43.478 0.00 0.00 30.62 2.59
1869 1883 4.399004 AGCTCAGCTCAATGGTTAGTAG 57.601 45.455 0.00 0.00 30.62 2.57
1882 1896 0.683412 TGTGTGTGATGAGCTCAGCT 59.317 50.000 30.29 11.74 43.88 4.24
1883 1897 1.077123 CTGTGTGTGATGAGCTCAGC 58.923 55.000 24.85 24.85 33.51 4.26
1884 1898 2.738013 TCTGTGTGTGATGAGCTCAG 57.262 50.000 22.96 5.01 33.51 3.35
1885 1899 3.690475 AATCTGTGTGTGATGAGCTCA 57.310 42.857 20.79 20.79 0.00 4.26
1886 1900 3.061831 CGAAATCTGTGTGTGATGAGCTC 59.938 47.826 6.82 6.82 0.00 4.09
1887 1901 2.998670 CGAAATCTGTGTGTGATGAGCT 59.001 45.455 0.00 0.00 0.00 4.09
1888 1902 2.738846 ACGAAATCTGTGTGTGATGAGC 59.261 45.455 0.00 0.00 0.00 4.26
1889 1903 3.124128 CCACGAAATCTGTGTGTGATGAG 59.876 47.826 0.00 0.00 35.56 2.90
1890 1904 3.066380 CCACGAAATCTGTGTGTGATGA 58.934 45.455 0.00 0.00 35.56 2.92
1891 1905 2.807967 ACCACGAAATCTGTGTGTGATG 59.192 45.455 0.00 0.00 35.56 3.07
1892 1906 3.126001 ACCACGAAATCTGTGTGTGAT 57.874 42.857 0.00 0.00 35.56 3.06
1893 1907 2.613026 ACCACGAAATCTGTGTGTGA 57.387 45.000 0.00 0.00 35.56 3.58
1894 1908 3.993736 TGATACCACGAAATCTGTGTGTG 59.006 43.478 0.00 0.00 35.56 3.82
1895 1909 4.265904 TGATACCACGAAATCTGTGTGT 57.734 40.909 0.00 0.00 35.56 3.72
1896 1910 5.605564 TTTGATACCACGAAATCTGTGTG 57.394 39.130 0.00 0.00 35.56 3.82
1897 1911 4.154195 GCTTTGATACCACGAAATCTGTGT 59.846 41.667 0.00 0.00 35.56 3.72
1898 1912 4.154015 TGCTTTGATACCACGAAATCTGTG 59.846 41.667 0.00 0.00 37.09 3.66
1899 1913 4.323417 TGCTTTGATACCACGAAATCTGT 58.677 39.130 0.00 0.00 0.00 3.41
1900 1914 4.944962 TGCTTTGATACCACGAAATCTG 57.055 40.909 0.00 0.00 0.00 2.90
1901 1915 4.943705 ACATGCTTTGATACCACGAAATCT 59.056 37.500 0.00 0.00 0.00 2.40
1902 1916 5.163764 TGACATGCTTTGATACCACGAAATC 60.164 40.000 0.00 0.00 0.00 2.17
1903 1917 4.699735 TGACATGCTTTGATACCACGAAAT 59.300 37.500 0.00 0.00 0.00 2.17
1904 1918 4.068599 TGACATGCTTTGATACCACGAAA 58.931 39.130 0.00 0.00 0.00 3.46
1905 1919 3.669536 TGACATGCTTTGATACCACGAA 58.330 40.909 0.00 0.00 0.00 3.85
1906 1920 3.326836 TGACATGCTTTGATACCACGA 57.673 42.857 0.00 0.00 0.00 4.35
1907 1921 5.049828 TCTATGACATGCTTTGATACCACG 58.950 41.667 0.00 0.00 0.00 4.94
1908 1922 6.051717 ACTCTATGACATGCTTTGATACCAC 58.948 40.000 0.00 0.00 0.00 4.16
1909 1923 6.239217 ACTCTATGACATGCTTTGATACCA 57.761 37.500 0.00 0.00 0.00 3.25
1910 1924 7.596995 GTCTACTCTATGACATGCTTTGATACC 59.403 40.741 0.00 0.00 33.75 2.73
1911 1925 8.138074 TGTCTACTCTATGACATGCTTTGATAC 58.862 37.037 0.00 0.00 38.15 2.24
1912 1926 8.237811 TGTCTACTCTATGACATGCTTTGATA 57.762 34.615 0.00 0.00 38.15 2.15
1913 1927 7.117285 TGTCTACTCTATGACATGCTTTGAT 57.883 36.000 0.00 0.00 38.15 2.57
1914 1928 6.153510 ACTGTCTACTCTATGACATGCTTTGA 59.846 38.462 0.00 0.00 41.56 2.69
1915 1929 6.255237 CACTGTCTACTCTATGACATGCTTTG 59.745 42.308 0.00 0.00 41.56 2.77
1916 1930 6.153510 TCACTGTCTACTCTATGACATGCTTT 59.846 38.462 0.00 0.00 41.56 3.51
1917 1931 5.654209 TCACTGTCTACTCTATGACATGCTT 59.346 40.000 0.00 0.00 41.56 3.91
1918 1932 5.196695 TCACTGTCTACTCTATGACATGCT 58.803 41.667 0.00 0.00 41.56 3.79
1919 1933 5.506686 TCACTGTCTACTCTATGACATGC 57.493 43.478 0.00 0.00 41.56 4.06
1920 1934 7.036996 ACATCACTGTCTACTCTATGACATG 57.963 40.000 0.00 0.00 41.56 3.21
1921 1935 7.652524 AACATCACTGTCTACTCTATGACAT 57.347 36.000 0.00 0.00 41.56 3.06
1922 1936 7.468141 AAACATCACTGTCTACTCTATGACA 57.532 36.000 0.00 0.00 40.39 3.58
1923 1937 7.815068 ACAAAACATCACTGTCTACTCTATGAC 59.185 37.037 0.00 0.00 33.36 3.06
1924 1938 7.814587 CACAAAACATCACTGTCTACTCTATGA 59.185 37.037 0.00 0.00 33.36 2.15
1925 1939 7.412346 GCACAAAACATCACTGTCTACTCTATG 60.412 40.741 0.00 0.00 33.36 2.23
1926 1940 6.591834 GCACAAAACATCACTGTCTACTCTAT 59.408 38.462 0.00 0.00 33.36 1.98
1927 1941 5.926542 GCACAAAACATCACTGTCTACTCTA 59.073 40.000 0.00 0.00 33.36 2.43
1928 1942 4.752101 GCACAAAACATCACTGTCTACTCT 59.248 41.667 0.00 0.00 33.36 3.24
1929 1943 4.752101 AGCACAAAACATCACTGTCTACTC 59.248 41.667 0.00 0.00 33.36 2.59
1930 1944 4.512944 CAGCACAAAACATCACTGTCTACT 59.487 41.667 0.00 0.00 33.36 2.57
1931 1945 4.776743 CAGCACAAAACATCACTGTCTAC 58.223 43.478 0.00 0.00 33.36 2.59
1932 1946 3.250762 GCAGCACAAAACATCACTGTCTA 59.749 43.478 0.00 0.00 33.36 2.59
1933 1947 2.033801 GCAGCACAAAACATCACTGTCT 59.966 45.455 0.00 0.00 33.36 3.41
1934 1948 2.033801 AGCAGCACAAAACATCACTGTC 59.966 45.455 0.00 0.00 33.36 3.51
1935 1949 2.026641 AGCAGCACAAAACATCACTGT 58.973 42.857 0.00 0.00 37.12 3.55
1936 1950 2.787601 AGCAGCACAAAACATCACTG 57.212 45.000 0.00 0.00 0.00 3.66
1937 1951 3.480470 AGTAGCAGCACAAAACATCACT 58.520 40.909 0.00 0.00 0.00 3.41
1938 1952 3.904136 AGTAGCAGCACAAAACATCAC 57.096 42.857 0.00 0.00 0.00 3.06
1939 1953 4.916983 AAAGTAGCAGCACAAAACATCA 57.083 36.364 0.00 0.00 0.00 3.07
1940 1954 6.002062 ACTAAAGTAGCAGCACAAAACATC 57.998 37.500 0.00 0.00 0.00 3.06
1941 1955 5.530915 TGACTAAAGTAGCAGCACAAAACAT 59.469 36.000 0.00 0.00 0.00 2.71
1942 1956 4.878971 TGACTAAAGTAGCAGCACAAAACA 59.121 37.500 0.00 0.00 0.00 2.83
1943 1957 5.418310 TGACTAAAGTAGCAGCACAAAAC 57.582 39.130 0.00 0.00 0.00 2.43
1944 1958 6.094881 AGTTTGACTAAAGTAGCAGCACAAAA 59.905 34.615 0.00 0.00 0.00 2.44
1945 1959 5.588648 AGTTTGACTAAAGTAGCAGCACAAA 59.411 36.000 0.00 0.00 0.00 2.83
1946 1960 5.123227 AGTTTGACTAAAGTAGCAGCACAA 58.877 37.500 0.00 0.00 0.00 3.33
1947 1961 4.703897 AGTTTGACTAAAGTAGCAGCACA 58.296 39.130 0.00 0.00 0.00 4.57
1948 1962 4.991687 AGAGTTTGACTAAAGTAGCAGCAC 59.008 41.667 0.00 0.00 29.74 4.40
1949 1963 5.011125 AGAGAGTTTGACTAAAGTAGCAGCA 59.989 40.000 0.00 0.00 29.74 4.41
1950 1964 5.347364 CAGAGAGTTTGACTAAAGTAGCAGC 59.653 44.000 0.00 0.00 29.74 5.25
1951 1965 6.451393 ACAGAGAGTTTGACTAAAGTAGCAG 58.549 40.000 0.00 0.00 29.74 4.24
1952 1966 6.406692 ACAGAGAGTTTGACTAAAGTAGCA 57.593 37.500 0.00 0.00 29.74 3.49
1953 1967 6.346999 GCAACAGAGAGTTTGACTAAAGTAGC 60.347 42.308 0.00 0.00 38.74 3.58
1954 1968 6.146347 GGCAACAGAGAGTTTGACTAAAGTAG 59.854 42.308 0.00 0.00 38.74 2.57
1955 1969 5.989777 GGCAACAGAGAGTTTGACTAAAGTA 59.010 40.000 0.00 0.00 38.74 2.24
1956 1970 4.816925 GGCAACAGAGAGTTTGACTAAAGT 59.183 41.667 0.00 0.00 38.74 2.66
1957 1971 4.084328 CGGCAACAGAGAGTTTGACTAAAG 60.084 45.833 0.00 0.00 38.74 1.85
1958 1972 3.807622 CGGCAACAGAGAGTTTGACTAAA 59.192 43.478 0.00 0.00 38.74 1.85
1959 1973 3.390135 CGGCAACAGAGAGTTTGACTAA 58.610 45.455 0.00 0.00 38.74 2.24
1960 1974 2.866460 GCGGCAACAGAGAGTTTGACTA 60.866 50.000 0.00 0.00 38.74 2.59
1961 1975 1.871080 CGGCAACAGAGAGTTTGACT 58.129 50.000 0.00 0.00 38.74 3.41
1962 1976 0.235926 GCGGCAACAGAGAGTTTGAC 59.764 55.000 0.00 0.00 38.74 3.18
1963 1977 0.106708 AGCGGCAACAGAGAGTTTGA 59.893 50.000 1.45 0.00 38.74 2.69
1964 1978 0.947244 AAGCGGCAACAGAGAGTTTG 59.053 50.000 1.45 0.00 38.74 2.93
1965 1979 1.680338 AAAGCGGCAACAGAGAGTTT 58.320 45.000 1.45 0.00 38.74 2.66
1966 1980 2.037251 TCTAAAGCGGCAACAGAGAGTT 59.963 45.455 1.45 0.00 42.42 3.01
1967 1981 1.618837 TCTAAAGCGGCAACAGAGAGT 59.381 47.619 1.45 0.00 0.00 3.24
1968 1982 2.370281 TCTAAAGCGGCAACAGAGAG 57.630 50.000 1.45 0.00 0.00 3.20
1969 1983 3.447586 ACTATCTAAAGCGGCAACAGAGA 59.552 43.478 1.45 0.00 0.00 3.10
1970 1984 3.786635 ACTATCTAAAGCGGCAACAGAG 58.213 45.455 1.45 0.00 0.00 3.35
1971 1985 3.887621 ACTATCTAAAGCGGCAACAGA 57.112 42.857 1.45 1.10 0.00 3.41
1972 1986 6.604735 AAATACTATCTAAAGCGGCAACAG 57.395 37.500 1.45 0.00 0.00 3.16
1973 1987 6.995511 AAAATACTATCTAAAGCGGCAACA 57.004 33.333 1.45 0.00 0.00 3.33
2001 2015 3.565902 GGAATAAGATTGAAGGCCGGAAG 59.434 47.826 5.05 0.00 0.00 3.46
2002 2016 3.551846 GGAATAAGATTGAAGGCCGGAA 58.448 45.455 5.05 0.00 0.00 4.30
2003 2017 2.484770 CGGAATAAGATTGAAGGCCGGA 60.485 50.000 5.05 0.00 34.29 5.14
2004 2018 1.873591 CGGAATAAGATTGAAGGCCGG 59.126 52.381 0.00 0.00 34.29 6.13
2005 2019 2.561569 ACGGAATAAGATTGAAGGCCG 58.438 47.619 0.00 0.00 42.85 6.13
2006 2020 3.813724 GGTACGGAATAAGATTGAAGGCC 59.186 47.826 0.00 0.00 0.00 5.19
2007 2021 4.704965 AGGTACGGAATAAGATTGAAGGC 58.295 43.478 0.00 0.00 0.00 4.35
2008 2022 9.420551 GTATAAGGTACGGAATAAGATTGAAGG 57.579 37.037 0.00 0.00 0.00 3.46
2012 2026 9.976511 TGAAGTATAAGGTACGGAATAAGATTG 57.023 33.333 0.00 0.00 0.00 2.67
2030 2044 9.726232 GCCGACGACAATAATATATGAAGTATA 57.274 33.333 0.00 0.00 0.00 1.47
2031 2045 8.248253 TGCCGACGACAATAATATATGAAGTAT 58.752 33.333 0.00 0.00 0.00 2.12
2032 2046 7.595604 TGCCGACGACAATAATATATGAAGTA 58.404 34.615 0.00 0.00 0.00 2.24
2033 2047 6.452242 TGCCGACGACAATAATATATGAAGT 58.548 36.000 0.00 0.00 0.00 3.01
2034 2048 6.944557 TGCCGACGACAATAATATATGAAG 57.055 37.500 0.00 0.00 0.00 3.02
2035 2049 7.899178 ATTGCCGACGACAATAATATATGAA 57.101 32.000 7.67 0.00 36.00 2.57
2036 2050 8.248253 ACTATTGCCGACGACAATAATATATGA 58.752 33.333 15.88 0.00 38.99 2.15
2037 2051 8.407457 ACTATTGCCGACGACAATAATATATG 57.593 34.615 15.88 7.33 38.99 1.78
2038 2052 8.869897 CAACTATTGCCGACGACAATAATATAT 58.130 33.333 15.88 1.07 38.99 0.86
2039 2053 8.234887 CAACTATTGCCGACGACAATAATATA 57.765 34.615 15.88 0.00 38.99 0.86
2040 2054 7.117241 CAACTATTGCCGACGACAATAATAT 57.883 36.000 15.88 4.24 38.99 1.28
2041 2055 6.519353 CAACTATTGCCGACGACAATAATA 57.481 37.500 15.88 0.00 38.99 0.98
2042 2056 5.403897 CAACTATTGCCGACGACAATAAT 57.596 39.130 15.88 5.18 38.99 1.28
2043 2057 4.850859 CAACTATTGCCGACGACAATAA 57.149 40.909 15.88 2.99 38.99 1.40
2056 2070 3.312421 CCATACCAGAACGGCAACTATTG 59.688 47.826 0.00 0.00 39.03 1.90
2057 2071 3.054655 ACCATACCAGAACGGCAACTATT 60.055 43.478 0.00 0.00 39.03 1.73
2058 2072 2.504175 ACCATACCAGAACGGCAACTAT 59.496 45.455 0.00 0.00 39.03 2.12
2059 2073 1.903860 ACCATACCAGAACGGCAACTA 59.096 47.619 0.00 0.00 39.03 2.24
2060 2074 0.690762 ACCATACCAGAACGGCAACT 59.309 50.000 0.00 0.00 39.03 3.16
2061 2075 0.802494 CACCATACCAGAACGGCAAC 59.198 55.000 0.00 0.00 39.03 4.17
2062 2076 0.958382 GCACCATACCAGAACGGCAA 60.958 55.000 0.00 0.00 39.03 4.52
2063 2077 1.376683 GCACCATACCAGAACGGCA 60.377 57.895 0.00 0.00 39.03 5.69
2064 2078 2.461110 CGCACCATACCAGAACGGC 61.461 63.158 0.00 0.00 39.03 5.68
2065 2079 2.461110 GCGCACCATACCAGAACGG 61.461 63.158 0.30 0.00 42.50 4.44
2066 2080 1.447838 AGCGCACCATACCAGAACG 60.448 57.895 11.47 0.00 0.00 3.95
2067 2081 1.369091 CCAGCGCACCATACCAGAAC 61.369 60.000 11.47 0.00 0.00 3.01
2068 2082 1.078497 CCAGCGCACCATACCAGAA 60.078 57.895 11.47 0.00 0.00 3.02
2069 2083 1.836999 AACCAGCGCACCATACCAGA 61.837 55.000 11.47 0.00 0.00 3.86
2070 2084 0.107897 TAACCAGCGCACCATACCAG 60.108 55.000 11.47 0.00 0.00 4.00
2071 2085 0.544223 ATAACCAGCGCACCATACCA 59.456 50.000 11.47 0.00 0.00 3.25
2072 2086 1.675552 AATAACCAGCGCACCATACC 58.324 50.000 11.47 0.00 0.00 2.73
2073 2087 2.223479 CCAAATAACCAGCGCACCATAC 60.223 50.000 11.47 0.00 0.00 2.39
2074 2088 2.020720 CCAAATAACCAGCGCACCATA 58.979 47.619 11.47 0.00 0.00 2.74
2075 2089 0.817013 CCAAATAACCAGCGCACCAT 59.183 50.000 11.47 0.00 0.00 3.55
2076 2090 1.247419 CCCAAATAACCAGCGCACCA 61.247 55.000 11.47 0.00 0.00 4.17
2077 2091 1.510844 CCCAAATAACCAGCGCACC 59.489 57.895 11.47 0.00 0.00 5.01
2078 2092 1.248101 ACCCCAAATAACCAGCGCAC 61.248 55.000 11.47 0.00 0.00 5.34
2079 2093 0.963355 GACCCCAAATAACCAGCGCA 60.963 55.000 11.47 0.00 0.00 6.09
2080 2094 0.679960 AGACCCCAAATAACCAGCGC 60.680 55.000 0.00 0.00 0.00 5.92
2081 2095 1.834188 AAGACCCCAAATAACCAGCG 58.166 50.000 0.00 0.00 0.00 5.18
2082 2096 2.688446 GCTAAGACCCCAAATAACCAGC 59.312 50.000 0.00 0.00 0.00 4.85
2083 2097 3.694566 GTGCTAAGACCCCAAATAACCAG 59.305 47.826 0.00 0.00 0.00 4.00
2084 2098 3.692690 GTGCTAAGACCCCAAATAACCA 58.307 45.455 0.00 0.00 0.00 3.67
2085 2099 2.681344 CGTGCTAAGACCCCAAATAACC 59.319 50.000 0.00 0.00 0.00 2.85
2086 2100 3.373130 GTCGTGCTAAGACCCCAAATAAC 59.627 47.826 0.00 0.00 32.78 1.89
2087 2101 3.602483 GTCGTGCTAAGACCCCAAATAA 58.398 45.455 0.00 0.00 32.78 1.40
2088 2102 2.417651 CGTCGTGCTAAGACCCCAAATA 60.418 50.000 0.00 0.00 35.33 1.40
2089 2103 1.674817 CGTCGTGCTAAGACCCCAAAT 60.675 52.381 0.00 0.00 35.33 2.32
2090 2104 0.320073 CGTCGTGCTAAGACCCCAAA 60.320 55.000 0.00 0.00 35.33 3.28
2091 2105 1.180456 TCGTCGTGCTAAGACCCCAA 61.180 55.000 0.00 0.00 35.33 4.12
2092 2106 0.968901 ATCGTCGTGCTAAGACCCCA 60.969 55.000 0.00 0.00 35.33 4.96
2093 2107 0.175073 AATCGTCGTGCTAAGACCCC 59.825 55.000 0.00 0.00 35.33 4.95
2094 2108 2.005971 AAATCGTCGTGCTAAGACCC 57.994 50.000 0.00 0.00 35.33 4.46
2095 2109 3.546670 CAGTAAATCGTCGTGCTAAGACC 59.453 47.826 0.00 0.00 35.33 3.85
2096 2110 4.262510 GTCAGTAAATCGTCGTGCTAAGAC 59.737 45.833 0.00 0.00 35.41 3.01
2097 2111 4.155462 AGTCAGTAAATCGTCGTGCTAAGA 59.845 41.667 0.00 0.00 0.00 2.10
2098 2112 4.413087 AGTCAGTAAATCGTCGTGCTAAG 58.587 43.478 0.00 0.00 0.00 2.18
2099 2113 4.430137 AGTCAGTAAATCGTCGTGCTAA 57.570 40.909 0.00 0.00 0.00 3.09
2100 2114 5.526479 AGATAGTCAGTAAATCGTCGTGCTA 59.474 40.000 0.00 0.00 0.00 3.49
2101 2115 4.335874 AGATAGTCAGTAAATCGTCGTGCT 59.664 41.667 0.00 0.00 0.00 4.40
2102 2116 4.599047 AGATAGTCAGTAAATCGTCGTGC 58.401 43.478 0.00 0.00 0.00 5.34
2103 2117 6.134730 GGTAGATAGTCAGTAAATCGTCGTG 58.865 44.000 0.00 0.00 0.00 4.35
2104 2118 5.819379 TGGTAGATAGTCAGTAAATCGTCGT 59.181 40.000 0.00 0.00 0.00 4.34
2105 2119 6.296365 TGGTAGATAGTCAGTAAATCGTCG 57.704 41.667 0.00 0.00 0.00 5.12
2106 2120 8.805688 GTTTTGGTAGATAGTCAGTAAATCGTC 58.194 37.037 0.00 0.00 0.00 4.20
2107 2121 8.308931 TGTTTTGGTAGATAGTCAGTAAATCGT 58.691 33.333 0.00 0.00 0.00 3.73
2108 2122 8.697846 TGTTTTGGTAGATAGTCAGTAAATCG 57.302 34.615 0.00 0.00 0.00 3.34
2110 2124 9.449719 CCTTGTTTTGGTAGATAGTCAGTAAAT 57.550 33.333 0.00 0.00 0.00 1.40
2111 2125 8.434392 ACCTTGTTTTGGTAGATAGTCAGTAAA 58.566 33.333 0.00 0.00 35.80 2.01
2112 2126 7.970102 ACCTTGTTTTGGTAGATAGTCAGTAA 58.030 34.615 0.00 0.00 35.80 2.24
2113 2127 7.549147 ACCTTGTTTTGGTAGATAGTCAGTA 57.451 36.000 0.00 0.00 35.80 2.74
2114 2128 6.435292 ACCTTGTTTTGGTAGATAGTCAGT 57.565 37.500 0.00 0.00 35.80 3.41
2115 2129 6.090898 CGAACCTTGTTTTGGTAGATAGTCAG 59.909 42.308 0.00 0.00 36.69 3.51
2116 2130 5.929992 CGAACCTTGTTTTGGTAGATAGTCA 59.070 40.000 0.00 0.00 36.69 3.41
2117 2131 6.161381 TCGAACCTTGTTTTGGTAGATAGTC 58.839 40.000 0.00 0.00 36.69 2.59
2118 2132 6.105397 TCGAACCTTGTTTTGGTAGATAGT 57.895 37.500 0.00 0.00 36.69 2.12
2119 2133 6.019801 CGATCGAACCTTGTTTTGGTAGATAG 60.020 42.308 10.26 0.00 36.18 2.08
2120 2134 5.808540 CGATCGAACCTTGTTTTGGTAGATA 59.191 40.000 10.26 0.00 36.18 1.98
2121 2135 4.630069 CGATCGAACCTTGTTTTGGTAGAT 59.370 41.667 10.26 0.00 37.59 1.98
2122 2136 3.991773 CGATCGAACCTTGTTTTGGTAGA 59.008 43.478 10.26 0.00 36.69 2.59
2123 2137 3.744426 ACGATCGAACCTTGTTTTGGTAG 59.256 43.478 24.34 0.00 36.69 3.18
2124 2138 3.731089 ACGATCGAACCTTGTTTTGGTA 58.269 40.909 24.34 0.00 36.69 3.25
2125 2139 2.546789 GACGATCGAACCTTGTTTTGGT 59.453 45.455 24.34 0.00 39.91 3.67
2126 2140 2.806244 AGACGATCGAACCTTGTTTTGG 59.194 45.455 24.34 0.00 0.00 3.28
2127 2141 4.455124 GAAGACGATCGAACCTTGTTTTG 58.545 43.478 24.34 0.00 0.00 2.44
2128 2142 3.183775 CGAAGACGATCGAACCTTGTTTT 59.816 43.478 24.34 0.00 45.48 2.43
2129 2143 2.729882 CGAAGACGATCGAACCTTGTTT 59.270 45.455 24.34 5.32 45.48 2.83
2130 2144 2.288030 ACGAAGACGATCGAACCTTGTT 60.288 45.455 24.34 3.11 45.48 2.83
2131 2145 1.268899 ACGAAGACGATCGAACCTTGT 59.731 47.619 24.34 16.48 45.48 3.16
2132 2146 1.649171 CACGAAGACGATCGAACCTTG 59.351 52.381 24.34 15.96 45.48 3.61
2133 2147 1.538512 TCACGAAGACGATCGAACCTT 59.461 47.619 24.34 19.81 45.48 3.50
2134 2148 1.130749 CTCACGAAGACGATCGAACCT 59.869 52.381 24.34 12.50 45.48 3.50
2135 2149 1.536149 CTCACGAAGACGATCGAACC 58.464 55.000 24.34 10.31 45.48 3.62
2136 2150 1.536149 CCTCACGAAGACGATCGAAC 58.464 55.000 24.34 14.96 45.48 3.95
2137 2151 0.450583 CCCTCACGAAGACGATCGAA 59.549 55.000 24.34 0.00 45.48 3.71
2138 2152 0.392060 TCCCTCACGAAGACGATCGA 60.392 55.000 24.34 0.00 45.48 3.59
2140 2154 2.464865 CAATCCCTCACGAAGACGATC 58.535 52.381 0.00 0.00 42.66 3.69
2141 2155 1.137086 CCAATCCCTCACGAAGACGAT 59.863 52.381 0.00 0.00 42.66 3.73
2142 2156 0.530744 CCAATCCCTCACGAAGACGA 59.469 55.000 0.00 0.00 42.66 4.20
2143 2157 1.084370 GCCAATCCCTCACGAAGACG 61.084 60.000 0.00 0.00 45.75 4.18
2144 2158 1.084370 CGCCAATCCCTCACGAAGAC 61.084 60.000 0.00 0.00 0.00 3.01
2145 2159 1.218047 CGCCAATCCCTCACGAAGA 59.782 57.895 0.00 0.00 0.00 2.87
2146 2160 0.391130 TTCGCCAATCCCTCACGAAG 60.391 55.000 0.00 0.00 37.78 3.79
2147 2161 0.391130 CTTCGCCAATCCCTCACGAA 60.391 55.000 0.00 0.00 40.12 3.85
2148 2162 1.218047 CTTCGCCAATCCCTCACGA 59.782 57.895 0.00 0.00 0.00 4.35
2149 2163 1.084370 GTCTTCGCCAATCCCTCACG 61.084 60.000 0.00 0.00 0.00 4.35
2150 2164 1.084370 CGTCTTCGCCAATCCCTCAC 61.084 60.000 0.00 0.00 0.00 3.51
2151 2165 1.218047 CGTCTTCGCCAATCCCTCA 59.782 57.895 0.00 0.00 0.00 3.86
2152 2166 0.806492 GTCGTCTTCGCCAATCCCTC 60.806 60.000 0.00 0.00 36.96 4.30
2153 2167 1.218316 GTCGTCTTCGCCAATCCCT 59.782 57.895 0.00 0.00 36.96 4.20
2154 2168 0.672401 TTGTCGTCTTCGCCAATCCC 60.672 55.000 0.00 0.00 30.13 3.85
2155 2169 0.442699 GTTGTCGTCTTCGCCAATCC 59.557 55.000 0.00 0.00 37.28 3.01
2156 2170 1.136336 GTGTTGTCGTCTTCGCCAATC 60.136 52.381 0.00 0.00 37.28 2.67
2157 2171 0.865769 GTGTTGTCGTCTTCGCCAAT 59.134 50.000 0.00 0.00 37.28 3.16
2158 2172 1.484227 CGTGTTGTCGTCTTCGCCAA 61.484 55.000 0.00 0.00 32.63 4.52
2159 2173 1.947146 CGTGTTGTCGTCTTCGCCA 60.947 57.895 0.00 0.00 36.96 5.69
2160 2174 2.844146 CGTGTTGTCGTCTTCGCC 59.156 61.111 0.00 0.00 36.96 5.54
2161 2175 2.167918 GCGTGTTGTCGTCTTCGC 59.832 61.111 0.00 0.00 36.96 4.70
2162 2176 1.660575 AGGCGTGTTGTCGTCTTCG 60.661 57.895 0.00 0.00 43.31 3.79
2163 2177 4.338327 AGGCGTGTTGTCGTCTTC 57.662 55.556 0.00 0.00 43.31 2.87
2166 2180 1.853319 CTGAAGGCGTGTTGTCGTC 59.147 57.895 0.00 0.00 35.56 4.20
2167 2181 2.244651 GCTGAAGGCGTGTTGTCGT 61.245 57.895 0.00 0.00 0.00 4.34
2168 2182 2.551270 GCTGAAGGCGTGTTGTCG 59.449 61.111 0.00 0.00 0.00 4.35
2177 2191 6.364976 ACAAAAATTACATTAACGCTGAAGGC 59.635 34.615 0.00 0.00 37.64 4.35
2178 2192 7.867445 ACAAAAATTACATTAACGCTGAAGG 57.133 32.000 0.00 0.00 0.00 3.46
2180 2194 9.953697 AGTAACAAAAATTACATTAACGCTGAA 57.046 25.926 0.00 0.00 37.49 3.02
2181 2195 9.953697 AAGTAACAAAAATTACATTAACGCTGA 57.046 25.926 0.00 0.00 37.49 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.