Multiple sequence alignment - TraesCS5A01G486400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G486400 chr5A 100.000 3839 0 0 1 3839 657204876 657208714 0.000000e+00 7090
1 TraesCS5A01G486400 chr5A 96.795 156 4 1 3684 3839 366028758 366028604 3.800000e-65 259
2 TraesCS5A01G486400 chr5B 90.607 1959 129 20 1306 3229 666207735 666209673 0.000000e+00 2547
3 TraesCS5A01G486400 chr5B 88.127 1196 71 28 1 1156 666206329 666207493 0.000000e+00 1356
4 TraesCS5A01G486400 chr5B 87.316 339 26 9 3236 3566 666209727 666210056 4.680000e-99 372
5 TraesCS5A01G486400 chr5D 90.184 2007 115 25 1275 3233 528978744 528980716 0.000000e+00 2540
6 TraesCS5A01G486400 chr5D 89.487 1170 65 28 1 1145 528977418 528978554 0.000000e+00 1426
7 TraesCS5A01G486400 chr5D 91.640 311 18 5 3258 3566 528980875 528981179 1.270000e-114 424
8 TraesCS5A01G486400 chr6A 96.154 156 5 1 3684 3839 556914527 556914373 1.770000e-63 254
9 TraesCS5A01G486400 chr6A 94.444 162 4 3 3678 3839 215028099 215028255 1.070000e-60 244
10 TraesCS5A01G486400 chr3A 94.578 166 5 4 3674 3839 697227444 697227283 1.770000e-63 254
11 TraesCS5A01G486400 chr3B 95.570 158 6 1 3682 3839 767298160 767298004 6.370000e-63 252
12 TraesCS5A01G486400 chr1A 95.570 158 6 1 3682 3839 75709981 75710137 6.370000e-63 252
13 TraesCS5A01G486400 chr6B 93.452 168 8 3 3672 3839 705799584 705799748 2.960000e-61 246
14 TraesCS5A01G486400 chr2B 94.872 156 7 1 3684 3839 479989416 479989262 3.830000e-60 243
15 TraesCS5A01G486400 chr7B 91.765 170 11 3 3670 3839 377817500 377817334 2.310000e-57 233


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G486400 chr5A 657204876 657208714 3838 False 7090.000000 7090 100.000000 1 3839 1 chr5A.!!$F1 3838
1 TraesCS5A01G486400 chr5B 666206329 666210056 3727 False 1425.000000 2547 88.683333 1 3566 3 chr5B.!!$F1 3565
2 TraesCS5A01G486400 chr5D 528977418 528981179 3761 False 1463.333333 2540 90.437000 1 3566 3 chr5D.!!$F1 3565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 619 0.036858 GACTCCACTCAGCTTGGGAC 60.037 60.0 3.08 0.0 34.56 4.46 F
1326 1500 0.106708 GTCCTGTCTTGTGCTGTGGA 59.893 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2229 2451 0.911525 AGCCACTGCCACATCCTACT 60.912 55.0 0.00 0.0 38.69 2.57 R
2942 3168 0.036858 GACAGGCAGGTCTGAACTCC 60.037 60.0 8.06 0.0 38.11 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
442 464 1.136984 GTCGCAGTGGTAGGACGAG 59.863 63.158 0.00 0.00 32.76 4.18
479 501 4.819761 TGGAGACGAGCGCCATGC 62.820 66.667 2.29 0.00 41.91 4.06
597 619 0.036858 GACTCCACTCAGCTTGGGAC 60.037 60.000 3.08 0.00 34.56 4.46
599 621 0.248843 CTCCACTCAGCTTGGGACTC 59.751 60.000 3.08 0.00 34.56 3.36
667 704 4.410400 GTTCCCCACGAGGCCTGG 62.410 72.222 12.00 13.19 0.00 4.45
668 705 4.649705 TTCCCCACGAGGCCTGGA 62.650 66.667 23.01 13.52 0.00 3.86
688 734 4.073293 GACCAGAAGTCCAGAACAGAAA 57.927 45.455 0.00 0.00 39.84 2.52
689 735 4.646572 GACCAGAAGTCCAGAACAGAAAT 58.353 43.478 0.00 0.00 39.84 2.17
690 736 4.646572 ACCAGAAGTCCAGAACAGAAATC 58.353 43.478 0.00 0.00 0.00 2.17
691 737 4.006319 CCAGAAGTCCAGAACAGAAATCC 58.994 47.826 0.00 0.00 0.00 3.01
692 738 4.505566 CCAGAAGTCCAGAACAGAAATCCA 60.506 45.833 0.00 0.00 0.00 3.41
694 740 5.532406 CAGAAGTCCAGAACAGAAATCCAAA 59.468 40.000 0.00 0.00 0.00 3.28
695 741 6.039717 CAGAAGTCCAGAACAGAAATCCAAAA 59.960 38.462 0.00 0.00 0.00 2.44
758 813 4.208686 CGCCCTCCCGCACTAGAC 62.209 72.222 0.00 0.00 0.00 2.59
759 814 2.760385 GCCCTCCCGCACTAGACT 60.760 66.667 0.00 0.00 0.00 3.24
760 815 2.787567 GCCCTCCCGCACTAGACTC 61.788 68.421 0.00 0.00 0.00 3.36
794 867 4.971125 GCCGCCCCACGCTAGATC 62.971 72.222 0.00 0.00 41.76 2.75
795 868 4.301027 CCGCCCCACGCTAGATCC 62.301 72.222 0.00 0.00 41.76 3.36
796 869 4.647615 CGCCCCACGCTAGATCCG 62.648 72.222 0.00 0.00 34.21 4.18
880 957 1.035385 CCCACCCCCTATTGCGTTTC 61.035 60.000 0.00 0.00 0.00 2.78
915 992 0.380709 CGTTTCTGATCGCGCGATTC 60.381 55.000 41.80 32.32 34.60 2.52
993 1070 4.308458 TGTCGCGGGTCTGGTTGG 62.308 66.667 6.13 0.00 0.00 3.77
1112 1189 2.125350 CAAGGTCAGCCCGCTCTC 60.125 66.667 0.00 0.00 38.74 3.20
1138 1222 1.134946 CCTCCCGCCTTGCTTTATTTG 59.865 52.381 0.00 0.00 0.00 2.32
1145 1229 3.128589 CGCCTTGCTTTATTTGCCTTAGA 59.871 43.478 0.00 0.00 0.00 2.10
1146 1230 4.202050 CGCCTTGCTTTATTTGCCTTAGAT 60.202 41.667 0.00 0.00 0.00 1.98
1148 1232 5.163519 GCCTTGCTTTATTTGCCTTAGATGA 60.164 40.000 0.00 0.00 0.00 2.92
1149 1233 6.462067 GCCTTGCTTTATTTGCCTTAGATGAT 60.462 38.462 0.00 0.00 0.00 2.45
1151 1235 8.632679 CCTTGCTTTATTTGCCTTAGATGATTA 58.367 33.333 0.00 0.00 0.00 1.75
1152 1236 9.674824 CTTGCTTTATTTGCCTTAGATGATTAG 57.325 33.333 0.00 0.00 0.00 1.73
1153 1237 8.978874 TGCTTTATTTGCCTTAGATGATTAGA 57.021 30.769 0.00 0.00 0.00 2.10
1154 1238 9.578576 TGCTTTATTTGCCTTAGATGATTAGAT 57.421 29.630 0.00 0.00 0.00 1.98
1159 1243 7.379059 TTTGCCTTAGATGATTAGATCAGGA 57.621 36.000 0.00 0.00 43.53 3.86
1160 1244 6.352016 TGCCTTAGATGATTAGATCAGGAC 57.648 41.667 0.00 0.00 43.53 3.85
1161 1245 5.840693 TGCCTTAGATGATTAGATCAGGACA 59.159 40.000 0.00 0.00 43.53 4.02
1162 1246 6.499699 TGCCTTAGATGATTAGATCAGGACAT 59.500 38.462 0.00 0.00 43.53 3.06
1168 1252 7.018150 AGATGATTAGATCAGGACATCCTCTT 58.982 38.462 14.59 0.00 46.65 2.85
1186 1287 4.142708 CCTCTTCTCGATCGATGGATACTG 60.143 50.000 19.78 4.24 31.51 2.74
1187 1288 4.642429 TCTTCTCGATCGATGGATACTGA 58.358 43.478 19.78 6.80 31.51 3.41
1189 1290 4.009370 TCTCGATCGATGGATACTGAGT 57.991 45.455 19.78 0.00 32.52 3.41
1195 1296 5.449314 CGATCGATGGATACTGAGTAATCCC 60.449 48.000 10.26 9.24 31.51 3.85
1220 1327 2.884207 GCCGTCCAACCGTCGATC 60.884 66.667 0.00 0.00 0.00 3.69
1226 1333 0.892063 TCCAACCGTCGATCACATCA 59.108 50.000 0.00 0.00 0.00 3.07
1237 1373 2.009774 GATCACATCAAACCCCGTGAG 58.990 52.381 0.00 0.00 41.36 3.51
1259 1395 3.366273 GCTTGAATGCGGTTTCAGAATCA 60.366 43.478 0.00 0.00 36.97 2.57
1260 1396 4.676196 GCTTGAATGCGGTTTCAGAATCAT 60.676 41.667 0.00 0.00 36.97 2.45
1261 1397 4.621068 TGAATGCGGTTTCAGAATCATC 57.379 40.909 0.00 0.00 32.07 2.92
1262 1398 4.264253 TGAATGCGGTTTCAGAATCATCT 58.736 39.130 0.00 0.00 35.88 2.90
1271 1407 1.303309 CAGAATCATCTGCGGGTTCC 58.697 55.000 0.00 0.00 46.11 3.62
1272 1408 1.134280 CAGAATCATCTGCGGGTTCCT 60.134 52.381 0.00 0.00 46.11 3.36
1273 1409 1.139853 AGAATCATCTGCGGGTTCCTC 59.860 52.381 0.00 0.00 33.59 3.71
1282 1456 3.263425 TCTGCGGGTTCCTCTTTAAGAAT 59.737 43.478 0.00 0.00 0.00 2.40
1284 1458 4.510571 TGCGGGTTCCTCTTTAAGAATAC 58.489 43.478 0.00 0.00 0.00 1.89
1285 1459 3.554731 GCGGGTTCCTCTTTAAGAATACG 59.445 47.826 0.00 0.00 0.00 3.06
1299 1473 4.881019 AGAATACGAGGAGATTGGATGG 57.119 45.455 0.00 0.00 0.00 3.51
1304 1478 3.375699 ACGAGGAGATTGGATGGTACTT 58.624 45.455 0.00 0.00 0.00 2.24
1305 1479 3.385111 ACGAGGAGATTGGATGGTACTTC 59.615 47.826 0.00 0.00 0.00 3.01
1306 1480 3.243907 CGAGGAGATTGGATGGTACTTCC 60.244 52.174 8.06 8.06 0.00 3.46
1307 1481 2.700897 AGGAGATTGGATGGTACTTCCG 59.299 50.000 9.79 0.00 39.52 4.30
1315 1489 2.100989 GATGGTACTTCCGTCCTGTCT 58.899 52.381 0.00 0.00 44.26 3.41
1319 1493 2.609737 GGTACTTCCGTCCTGTCTTGTG 60.610 54.545 0.00 0.00 0.00 3.33
1322 1496 0.249868 TTCCGTCCTGTCTTGTGCTG 60.250 55.000 0.00 0.00 0.00 4.41
1324 1498 1.224069 CCGTCCTGTCTTGTGCTGTG 61.224 60.000 0.00 0.00 0.00 3.66
1326 1500 0.106708 GTCCTGTCTTGTGCTGTGGA 59.893 55.000 0.00 0.00 0.00 4.02
1327 1501 0.836606 TCCTGTCTTGTGCTGTGGAA 59.163 50.000 0.00 0.00 0.00 3.53
1328 1502 1.421268 TCCTGTCTTGTGCTGTGGAAT 59.579 47.619 0.00 0.00 0.00 3.01
1329 1503 1.808945 CCTGTCTTGTGCTGTGGAATC 59.191 52.381 0.00 0.00 0.00 2.52
1330 1504 2.551721 CCTGTCTTGTGCTGTGGAATCT 60.552 50.000 0.00 0.00 0.00 2.40
1331 1505 2.483106 CTGTCTTGTGCTGTGGAATCTG 59.517 50.000 0.00 0.00 0.00 2.90
1339 1524 1.200948 GCTGTGGAATCTGGTTTGCTC 59.799 52.381 0.00 0.00 0.00 4.26
1352 1537 6.721318 TCTGGTTTGCTCTAGGAATATTTGT 58.279 36.000 0.00 0.00 0.00 2.83
1378 1563 3.646554 GCAAGCCCTTTTTGCTGC 58.353 55.556 2.93 0.00 45.64 5.25
1383 1568 1.188863 AGCCCTTTTTGCTGCTATGG 58.811 50.000 0.00 0.00 37.76 2.74
1388 1575 3.195396 CCCTTTTTGCTGCTATGGCTAAA 59.805 43.478 1.68 0.00 39.59 1.85
1390 1577 5.237048 CCTTTTTGCTGCTATGGCTAAAAA 58.763 37.500 16.57 16.57 41.11 1.94
1428 1627 8.434392 AGATAACAAGTGGGTTTTGTTCTAGTA 58.566 33.333 6.63 0.00 43.26 1.82
1433 1632 4.906060 AGTGGGTTTTGTTCTAGTACTCCT 59.094 41.667 0.00 0.00 0.00 3.69
1443 1642 5.069914 TGTTCTAGTACTCCTCAAAAGCACA 59.930 40.000 0.00 0.00 0.00 4.57
1476 1675 2.092914 GCCTTGTTGTGATAGCCTACCT 60.093 50.000 0.00 0.00 0.00 3.08
1477 1676 3.134081 GCCTTGTTGTGATAGCCTACCTA 59.866 47.826 0.00 0.00 0.00 3.08
1485 1688 3.006003 GTGATAGCCTACCTAAGTCCAGC 59.994 52.174 0.00 0.00 0.00 4.85
1488 1691 0.179070 GCCTACCTAAGTCCAGCTGC 60.179 60.000 8.66 0.00 0.00 5.25
1501 1704 1.677576 CCAGCTGCAACTGTTTCTTCA 59.322 47.619 15.64 0.00 35.83 3.02
1516 1719 6.781138 TGTTTCTTCACAACATCACACTTAC 58.219 36.000 0.00 0.00 0.00 2.34
1535 1738 6.381994 CACTTACCTTATCTGTACCCTTACCA 59.618 42.308 0.00 0.00 0.00 3.25
1583 1786 3.181445 TGCCAATGAGTTGTACTGGAACT 60.181 43.478 0.00 0.00 36.33 3.01
1613 1816 6.436843 TGTTTCTCTTCTTGGTTTTCAGTC 57.563 37.500 0.00 0.00 0.00 3.51
1614 1817 6.180472 TGTTTCTCTTCTTGGTTTTCAGTCT 58.820 36.000 0.00 0.00 0.00 3.24
1620 1823 5.983720 TCTTCTTGGTTTTCAGTCTACTTCG 59.016 40.000 0.00 0.00 0.00 3.79
1627 1830 5.050295 GGTTTTCAGTCTACTTCGTTCCTTG 60.050 44.000 0.00 0.00 0.00 3.61
1636 1839 3.378339 ACTTCGTTCCTTGTTCGTGTAG 58.622 45.455 0.00 0.00 0.00 2.74
1637 1840 1.774639 TCGTTCCTTGTTCGTGTAGC 58.225 50.000 0.00 0.00 0.00 3.58
1649 1852 1.399440 TCGTGTAGCGTCACCTATGTC 59.601 52.381 8.30 0.00 42.13 3.06
1655 1858 4.885325 TGTAGCGTCACCTATGTCTTATCA 59.115 41.667 0.00 0.00 0.00 2.15
1702 1905 5.138125 TGGACTTGCCAATGAAATTTCTC 57.862 39.130 18.64 4.97 45.87 2.87
1705 1908 6.071952 TGGACTTGCCAATGAAATTTCTCTAC 60.072 38.462 18.64 5.93 45.87 2.59
1730 1933 9.598517 ACCAAATTTATTTATTGTGCCATAGTG 57.401 29.630 0.00 0.00 0.00 2.74
1741 1944 0.839946 GCCATAGTGGAGGGATGTGT 59.160 55.000 0.00 0.00 40.96 3.72
1750 1953 4.137543 GTGGAGGGATGTGTGGATTTATC 58.862 47.826 0.00 0.00 0.00 1.75
1752 1955 2.808543 GAGGGATGTGTGGATTTATCGC 59.191 50.000 0.00 0.00 34.02 4.58
1772 1975 3.365472 GCAGGGGAACAAATATTGTCCT 58.635 45.455 11.09 0.00 44.59 3.85
1815 2018 6.400568 AGTTGTTAATTTTGGATGAGCATGG 58.599 36.000 0.00 0.00 0.00 3.66
1816 2019 5.341872 TGTTAATTTTGGATGAGCATGGG 57.658 39.130 0.00 0.00 0.00 4.00
1821 2024 3.686227 TTTGGATGAGCATGGGGTTAT 57.314 42.857 0.00 0.00 0.00 1.89
1822 2025 3.686227 TTGGATGAGCATGGGGTTATT 57.314 42.857 0.00 0.00 0.00 1.40
1826 2034 4.353489 TGGATGAGCATGGGGTTATTATGA 59.647 41.667 0.00 0.00 0.00 2.15
1833 2041 6.715280 AGCATGGGGTTATTATGATAGAGTG 58.285 40.000 0.00 0.00 0.00 3.51
1841 2049 9.778741 GGGTTATTATGATAGAGTGAACATGAA 57.221 33.333 0.00 0.00 0.00 2.57
1932 2142 4.162040 AGGCATCCCTCTACAAAAGATG 57.838 45.455 0.00 0.00 36.46 2.90
1981 2203 7.613411 AGAGTTCTCCCCATTCTTCTAATTTTG 59.387 37.037 0.00 0.00 0.00 2.44
2039 2261 6.115446 TCTTTCAGATAATGTGTTGGCTAGG 58.885 40.000 0.00 0.00 0.00 3.02
2040 2262 5.692115 TTCAGATAATGTGTTGGCTAGGA 57.308 39.130 0.00 0.00 0.00 2.94
2041 2263 5.282055 TCAGATAATGTGTTGGCTAGGAG 57.718 43.478 0.00 0.00 0.00 3.69
2056 2278 6.841601 TGGCTAGGAGTATTTGATGCTAATT 58.158 36.000 0.00 0.00 0.00 1.40
2063 2285 8.534496 AGGAGTATTTGATGCTAATTTTGCTTT 58.466 29.630 4.54 0.00 0.00 3.51
2190 2412 0.321034 ATGCGCTGCTCTCTGACAAA 60.321 50.000 9.73 0.00 0.00 2.83
2229 2451 2.016318 CAGCCGAGTTTATGCATGGAA 58.984 47.619 10.16 0.98 0.00 3.53
2247 2469 0.035056 AAGTAGGATGTGGCAGTGGC 60.035 55.000 10.30 10.30 40.13 5.01
2391 2613 5.882000 TGTTCATGCAGATGTTATTGCTACT 59.118 36.000 0.00 0.00 40.87 2.57
2397 2619 7.895975 TGCAGATGTTATTGCTACTGATATC 57.104 36.000 0.00 0.00 40.87 1.63
2406 2628 3.551846 TGCTACTGATATCGTGTCAGGA 58.448 45.455 15.19 0.00 45.72 3.86
2427 2649 0.884704 TTGAGAAACGTCTGGCTGGC 60.885 55.000 0.00 0.00 32.80 4.85
2544 2766 2.203070 GGGCGCCAAGTGATCGAT 60.203 61.111 30.85 0.00 0.00 3.59
2553 2775 3.312828 CCAAGTGATCGATCGGATTCTC 58.687 50.000 20.03 10.66 34.82 2.87
2559 2781 1.372251 CGATCGGATTCTCCCTGCG 60.372 63.158 7.38 0.00 31.13 5.18
2565 2787 3.665675 GATTCTCCCTGCGGTGCGT 62.666 63.158 0.00 0.00 0.00 5.24
2586 2808 1.538950 GAGCTGCTGTCAGAAAAAGGG 59.461 52.381 7.01 0.00 42.95 3.95
2661 2883 2.048503 AACGAGAAGGGGTTCGCG 60.049 61.111 0.00 0.00 46.90 5.87
2664 2886 2.654877 GAGAAGGGGTTCGCGTCA 59.345 61.111 5.77 0.00 0.00 4.35
2824 3046 5.708948 TCAAATCCTTTTGGCATAAGAACG 58.291 37.500 17.72 3.22 42.10 3.95
2840 3062 1.166531 AACGCTGGCAGTTCTTGACC 61.167 55.000 17.16 0.00 31.91 4.02
2853 3075 4.103153 AGTTCTTGACCTCATCAGTTTGGA 59.897 41.667 0.00 0.00 38.99 3.53
2860 3082 1.912043 CTCATCAGTTTGGACCCTCCT 59.088 52.381 0.00 0.00 37.46 3.69
2876 3098 7.906192 TGGACCCTCCTATCATGAAATATATCA 59.094 37.037 0.00 0.00 37.46 2.15
2942 3168 4.449068 GTGTCTGAATGAGGTGTTACTGTG 59.551 45.833 0.00 0.00 0.00 3.66
2974 3200 0.681733 GCCTGTCCTCTGAGAACACA 59.318 55.000 6.17 5.22 0.00 3.72
3003 3229 5.423610 AGACTGACATGGTGAACTTAGCTAT 59.576 40.000 0.00 0.00 0.00 2.97
3004 3230 6.607600 AGACTGACATGGTGAACTTAGCTATA 59.392 38.462 0.00 0.00 0.00 1.31
3012 3238 7.373617 TGGTGAACTTAGCTATATGATCCAA 57.626 36.000 0.00 0.00 0.00 3.53
3020 3246 7.605691 ACTTAGCTATATGATCCAATGAGCAAC 59.394 37.037 0.00 0.00 40.87 4.17
3022 3248 4.397417 GCTATATGATCCAATGAGCAACCC 59.603 45.833 0.00 0.00 40.87 4.11
3027 3253 0.482446 TCCAATGAGCAACCCAACCT 59.518 50.000 0.00 0.00 0.00 3.50
3036 3262 2.570302 AGCAACCCAACCTATCGTAGTT 59.430 45.455 0.00 0.00 0.00 2.24
3038 3264 3.618019 GCAACCCAACCTATCGTAGTTGA 60.618 47.826 4.52 0.00 44.93 3.18
3041 3267 4.572909 ACCCAACCTATCGTAGTTGAAAC 58.427 43.478 4.52 0.00 44.93 2.78
3048 3274 7.120923 ACCTATCGTAGTTGAAACATACCAT 57.879 36.000 0.00 0.00 0.00 3.55
3057 3283 9.654663 GTAGTTGAAACATACCATACTTTCTCT 57.345 33.333 0.00 0.00 0.00 3.10
3091 3317 4.396166 ACAGCTGTCTTATTATGTTGGCAC 59.604 41.667 15.25 0.00 0.00 5.01
3120 3346 6.345803 GCGTGTTAGTGTGTATATGTGCTATG 60.346 42.308 0.00 0.00 0.00 2.23
3121 3347 6.915843 CGTGTTAGTGTGTATATGTGCTATGA 59.084 38.462 0.00 0.00 0.00 2.15
3122 3348 7.595130 CGTGTTAGTGTGTATATGTGCTATGAT 59.405 37.037 0.00 0.00 0.00 2.45
3123 3349 8.703336 GTGTTAGTGTGTATATGTGCTATGATG 58.297 37.037 0.00 0.00 0.00 3.07
3142 3368 4.095334 TGATGAATGAATCTGTTGCCTTCG 59.905 41.667 0.00 0.00 0.00 3.79
3151 3377 1.603802 CTGTTGCCTTCGTGAATGTGT 59.396 47.619 0.00 0.00 0.00 3.72
3156 3382 3.872696 TGCCTTCGTGAATGTGTCATAT 58.127 40.909 0.00 0.00 38.90 1.78
3169 3395 7.488792 TGAATGTGTCATATGCTGTTAAATTGC 59.511 33.333 0.00 0.00 0.00 3.56
3171 3397 5.123027 TGTGTCATATGCTGTTAAATTGCGA 59.877 36.000 0.00 0.00 0.00 5.10
3175 3401 6.747280 GTCATATGCTGTTAAATTGCGACTTT 59.253 34.615 0.00 0.00 0.00 2.66
3191 3417 3.428198 CGACTTTGTCTTGCAGAGAGAAG 59.572 47.826 13.92 13.92 38.69 2.85
3195 3421 4.406648 TTGTCTTGCAGAGAGAAGTTCA 57.593 40.909 5.50 0.00 33.13 3.18
3198 3424 1.725706 CTTGCAGAGAGAAGTTCAGCG 59.274 52.381 5.50 0.00 0.00 5.18
3219 3445 2.490903 GCAACTTCTGGATCTGTGCAAT 59.509 45.455 0.00 0.00 0.00 3.56
3220 3446 3.672511 GCAACTTCTGGATCTGTGCAATG 60.673 47.826 0.00 0.00 0.00 2.82
3229 3455 3.246226 GGATCTGTGCAATGTTAGCTACG 59.754 47.826 0.00 0.00 0.00 3.51
3231 3457 3.659786 TCTGTGCAATGTTAGCTACGTT 58.340 40.909 0.00 0.00 36.40 3.99
3233 3459 3.394719 TGTGCAATGTTAGCTACGTTCA 58.605 40.909 0.00 0.00 33.68 3.18
3234 3460 3.810386 TGTGCAATGTTAGCTACGTTCAA 59.190 39.130 0.00 0.00 33.68 2.69
3324 3685 0.103390 TTTGTTCTCTGGTCGCGTCA 59.897 50.000 5.77 5.31 0.00 4.35
3340 3701 6.237996 GGTCGCGTCATTTGTTTTGATAGATA 60.238 38.462 5.77 0.00 0.00 1.98
3394 3755 1.141881 GGATCGGATGCACTGTCGT 59.858 57.895 4.47 0.00 0.00 4.34
3400 3761 1.630148 GGATGCACTGTCGTGTCTAC 58.370 55.000 0.00 0.00 43.16 2.59
3439 3803 4.122337 TGTAGTGGACTTGGAGGAGTTA 57.878 45.455 0.00 0.00 0.00 2.24
3475 3839 1.905637 TCCTCTTGCGAGTGAGTACA 58.094 50.000 4.53 0.00 35.43 2.90
3476 3840 1.540267 TCCTCTTGCGAGTGAGTACAC 59.460 52.381 4.53 0.00 46.24 2.90
3540 3907 3.118261 TCACAGAAACTTCAGCAAGGAGT 60.118 43.478 0.00 0.00 33.37 3.85
3546 3913 6.016777 CAGAAACTTCAGCAAGGAGTAAATGT 60.017 38.462 0.00 0.00 33.37 2.71
3549 3916 6.360370 ACTTCAGCAAGGAGTAAATGTCTA 57.640 37.500 0.00 0.00 33.37 2.59
3567 3934 8.691661 AATGTCTAGAGTTACAACAAAATGGT 57.308 30.769 0.00 0.00 0.00 3.55
3568 3935 8.691661 ATGTCTAGAGTTACAACAAAATGGTT 57.308 30.769 0.00 0.00 0.00 3.67
3580 3947 7.775397 CAACAAAATGGTTGTTCAAGAAGAT 57.225 32.000 1.57 0.00 42.43 2.40
3581 3948 8.200364 CAACAAAATGGTTGTTCAAGAAGATT 57.800 30.769 1.57 0.00 42.43 2.40
3582 3949 8.667463 CAACAAAATGGTTGTTCAAGAAGATTT 58.333 29.630 1.57 0.00 42.43 2.17
3583 3950 9.883142 AACAAAATGGTTGTTCAAGAAGATTTA 57.117 25.926 0.00 0.00 38.10 1.40
3599 3966 9.442047 AAGAAGATTTATATTCTTCCATAGCCG 57.558 33.333 16.58 0.00 46.71 5.52
3600 3967 8.043710 AGAAGATTTATATTCTTCCATAGCCGG 58.956 37.037 16.58 0.00 46.71 6.13
3601 3968 7.259088 AGATTTATATTCTTCCATAGCCGGT 57.741 36.000 1.90 0.00 0.00 5.28
3602 3969 8.375493 AGATTTATATTCTTCCATAGCCGGTA 57.625 34.615 1.90 0.00 0.00 4.02
3603 3970 8.478877 AGATTTATATTCTTCCATAGCCGGTAG 58.521 37.037 1.90 0.00 0.00 3.18
3604 3971 7.786046 TTTATATTCTTCCATAGCCGGTAGA 57.214 36.000 1.90 0.00 31.24 2.59
3605 3972 7.786046 TTATATTCTTCCATAGCCGGTAGAA 57.214 36.000 1.90 8.35 43.84 2.10
3606 3973 6.681729 ATATTCTTCCATAGCCGGTAGAAA 57.318 37.500 1.90 2.78 43.21 2.52
3607 3974 4.829872 TTCTTCCATAGCCGGTAGAAAA 57.170 40.909 1.90 0.00 38.91 2.29
3608 3975 4.133013 TCTTCCATAGCCGGTAGAAAAC 57.867 45.455 1.90 0.00 30.28 2.43
3609 3976 3.516300 TCTTCCATAGCCGGTAGAAAACA 59.484 43.478 1.90 0.00 30.28 2.83
3610 3977 3.985019 TCCATAGCCGGTAGAAAACAA 57.015 42.857 1.90 0.00 0.00 2.83
3611 3978 4.289238 TCCATAGCCGGTAGAAAACAAA 57.711 40.909 1.90 0.00 0.00 2.83
3612 3979 4.653868 TCCATAGCCGGTAGAAAACAAAA 58.346 39.130 1.90 0.00 0.00 2.44
3613 3980 4.456566 TCCATAGCCGGTAGAAAACAAAAC 59.543 41.667 1.90 0.00 0.00 2.43
3614 3981 4.216687 CCATAGCCGGTAGAAAACAAAACA 59.783 41.667 1.90 0.00 0.00 2.83
3615 3982 5.278561 CCATAGCCGGTAGAAAACAAAACAA 60.279 40.000 1.90 0.00 0.00 2.83
3616 3983 4.722361 AGCCGGTAGAAAACAAAACAAA 57.278 36.364 1.90 0.00 0.00 2.83
3617 3984 5.270893 AGCCGGTAGAAAACAAAACAAAT 57.729 34.783 1.90 0.00 0.00 2.32
3618 3985 5.666462 AGCCGGTAGAAAACAAAACAAATT 58.334 33.333 1.90 0.00 0.00 1.82
3619 3986 6.807789 AGCCGGTAGAAAACAAAACAAATTA 58.192 32.000 1.90 0.00 0.00 1.40
3620 3987 7.438564 AGCCGGTAGAAAACAAAACAAATTAT 58.561 30.769 1.90 0.00 0.00 1.28
3621 3988 7.383843 AGCCGGTAGAAAACAAAACAAATTATG 59.616 33.333 1.90 0.00 0.00 1.90
3622 3989 7.506474 CCGGTAGAAAACAAAACAAATTATGC 58.494 34.615 0.00 0.00 0.00 3.14
3623 3990 7.169982 CCGGTAGAAAACAAAACAAATTATGCA 59.830 33.333 0.00 0.00 0.00 3.96
3624 3991 8.543774 CGGTAGAAAACAAAACAAATTATGCAA 58.456 29.630 0.00 0.00 0.00 4.08
3625 3992 9.862585 GGTAGAAAACAAAACAAATTATGCAAG 57.137 29.630 0.00 0.00 0.00 4.01
3628 3995 9.598517 AGAAAACAAAACAAATTATGCAAGAGA 57.401 25.926 0.00 0.00 0.00 3.10
3631 3998 9.545105 AAACAAAACAAATTATGCAAGAGATCA 57.455 25.926 0.00 0.00 0.00 2.92
3632 3999 9.545105 AACAAAACAAATTATGCAAGAGATCAA 57.455 25.926 0.00 0.00 0.00 2.57
3633 4000 9.199982 ACAAAACAAATTATGCAAGAGATCAAG 57.800 29.630 0.00 0.00 0.00 3.02
3634 4001 9.199982 CAAAACAAATTATGCAAGAGATCAAGT 57.800 29.630 0.00 0.00 0.00 3.16
3635 4002 9.768662 AAAACAAATTATGCAAGAGATCAAGTT 57.231 25.926 0.00 0.00 0.00 2.66
3645 4012 8.109705 TGCAAGAGATCAAGTTAATTTTAGCA 57.890 30.769 0.00 0.00 0.00 3.49
3646 4013 8.239314 TGCAAGAGATCAAGTTAATTTTAGCAG 58.761 33.333 0.00 0.00 0.00 4.24
3647 4014 8.454106 GCAAGAGATCAAGTTAATTTTAGCAGA 58.546 33.333 0.00 0.00 0.00 4.26
3648 4015 9.985318 CAAGAGATCAAGTTAATTTTAGCAGAG 57.015 33.333 0.00 0.00 0.00 3.35
3649 4016 9.732130 AAGAGATCAAGTTAATTTTAGCAGAGT 57.268 29.630 0.00 0.00 0.00 3.24
3650 4017 9.732130 AGAGATCAAGTTAATTTTAGCAGAGTT 57.268 29.630 0.00 0.00 0.00 3.01
3651 4018 9.766277 GAGATCAAGTTAATTTTAGCAGAGTTG 57.234 33.333 0.00 0.00 0.00 3.16
3652 4019 8.734386 AGATCAAGTTAATTTTAGCAGAGTTGG 58.266 33.333 0.00 0.00 0.00 3.77
3653 4020 8.635765 ATCAAGTTAATTTTAGCAGAGTTGGA 57.364 30.769 0.00 0.00 0.00 3.53
3654 4021 8.635765 TCAAGTTAATTTTAGCAGAGTTGGAT 57.364 30.769 0.00 0.00 0.00 3.41
3655 4022 8.730680 TCAAGTTAATTTTAGCAGAGTTGGATC 58.269 33.333 0.00 0.00 0.00 3.36
3656 4023 7.631717 AGTTAATTTTAGCAGAGTTGGATCC 57.368 36.000 4.20 4.20 0.00 3.36
3657 4024 7.406104 AGTTAATTTTAGCAGAGTTGGATCCT 58.594 34.615 14.23 0.00 0.00 3.24
3658 4025 7.554476 AGTTAATTTTAGCAGAGTTGGATCCTC 59.446 37.037 14.23 6.36 0.00 3.71
3659 4026 5.707066 ATTTTAGCAGAGTTGGATCCTCT 57.293 39.130 14.23 11.34 39.87 3.69
3660 4027 4.744795 TTTAGCAGAGTTGGATCCTCTC 57.255 45.455 21.61 21.61 37.18 3.20
3661 4028 2.548464 AGCAGAGTTGGATCCTCTCT 57.452 50.000 24.30 24.30 37.18 3.10
3662 4029 2.831565 AGCAGAGTTGGATCCTCTCTT 58.168 47.619 26.15 16.28 37.18 2.85
3663 4030 2.500910 AGCAGAGTTGGATCCTCTCTTG 59.499 50.000 26.15 22.29 37.18 3.02
3664 4031 2.235898 GCAGAGTTGGATCCTCTCTTGT 59.764 50.000 26.15 11.99 37.18 3.16
3665 4032 3.307339 GCAGAGTTGGATCCTCTCTTGTT 60.307 47.826 26.15 11.73 37.18 2.83
3666 4033 4.805609 GCAGAGTTGGATCCTCTCTTGTTT 60.806 45.833 26.15 11.46 37.18 2.83
3667 4034 5.569630 GCAGAGTTGGATCCTCTCTTGTTTA 60.570 44.000 26.15 0.00 37.18 2.01
3668 4035 6.648192 CAGAGTTGGATCCTCTCTTGTTTAT 58.352 40.000 26.15 10.43 37.18 1.40
3669 4036 7.633772 GCAGAGTTGGATCCTCTCTTGTTTATA 60.634 40.741 26.15 0.00 37.18 0.98
3670 4037 8.260818 CAGAGTTGGATCCTCTCTTGTTTATAA 58.739 37.037 26.15 3.42 37.18 0.98
3671 4038 8.997734 AGAGTTGGATCCTCTCTTGTTTATAAT 58.002 33.333 24.30 7.86 34.14 1.28
3699 4066 7.880059 ATATAATACGAAAAGTCTAACGCCC 57.120 36.000 0.00 0.00 0.00 6.13
3700 4067 3.598019 ATACGAAAAGTCTAACGCCCA 57.402 42.857 0.00 0.00 0.00 5.36
3701 4068 2.467566 ACGAAAAGTCTAACGCCCAT 57.532 45.000 0.00 0.00 0.00 4.00
3702 4069 3.598019 ACGAAAAGTCTAACGCCCATA 57.402 42.857 0.00 0.00 0.00 2.74
3703 4070 3.256558 ACGAAAAGTCTAACGCCCATAC 58.743 45.455 0.00 0.00 0.00 2.39
3704 4071 2.280708 CGAAAAGTCTAACGCCCATACG 59.719 50.000 0.00 0.00 39.50 3.06
3715 4082 3.481661 CCATACGTGTGGGCGTTC 58.518 61.111 22.66 0.00 43.04 3.95
3716 4083 2.104253 CCATACGTGTGGGCGTTCC 61.104 63.158 22.66 0.00 43.04 3.62
3726 4093 2.741211 GGCGTTCCCCAACTCGTC 60.741 66.667 0.00 0.00 0.00 4.20
3727 4094 2.741211 GCGTTCCCCAACTCGTCC 60.741 66.667 0.00 0.00 0.00 4.79
3728 4095 2.738480 CGTTCCCCAACTCGTCCA 59.262 61.111 0.00 0.00 0.00 4.02
3729 4096 1.666872 CGTTCCCCAACTCGTCCAC 60.667 63.158 0.00 0.00 0.00 4.02
3730 4097 1.448497 GTTCCCCAACTCGTCCACA 59.552 57.895 0.00 0.00 0.00 4.17
3731 4098 0.036306 GTTCCCCAACTCGTCCACAT 59.964 55.000 0.00 0.00 0.00 3.21
3732 4099 0.036164 TTCCCCAACTCGTCCACATG 59.964 55.000 0.00 0.00 0.00 3.21
3733 4100 2.040544 CCCCAACTCGTCCACATGC 61.041 63.158 0.00 0.00 0.00 4.06
3734 4101 2.040544 CCCAACTCGTCCACATGCC 61.041 63.158 0.00 0.00 0.00 4.40
3735 4102 1.003355 CCAACTCGTCCACATGCCT 60.003 57.895 0.00 0.00 0.00 4.75
3736 4103 1.300971 CCAACTCGTCCACATGCCTG 61.301 60.000 0.00 0.00 0.00 4.85
3737 4104 1.003355 AACTCGTCCACATGCCTGG 60.003 57.895 0.00 0.00 0.00 4.45
3738 4105 1.480212 AACTCGTCCACATGCCTGGA 61.480 55.000 0.00 0.95 38.05 3.86
3739 4106 1.267574 ACTCGTCCACATGCCTGGAT 61.268 55.000 8.20 0.00 42.50 3.41
3740 4107 0.531532 CTCGTCCACATGCCTGGATC 60.532 60.000 8.20 2.66 42.50 3.36
3741 4108 1.884464 CGTCCACATGCCTGGATCG 60.884 63.158 8.20 9.62 42.50 3.69
3742 4109 1.221840 GTCCACATGCCTGGATCGT 59.778 57.895 8.20 0.00 42.50 3.73
3743 4110 0.811616 GTCCACATGCCTGGATCGTC 60.812 60.000 8.20 0.00 42.50 4.20
3744 4111 1.884464 CCACATGCCTGGATCGTCG 60.884 63.158 0.00 0.00 32.30 5.12
3745 4112 1.153568 CACATGCCTGGATCGTCGT 60.154 57.895 0.00 0.00 0.00 4.34
3746 4113 1.141881 ACATGCCTGGATCGTCGTC 59.858 57.895 0.00 0.00 0.00 4.20
3747 4114 1.592669 CATGCCTGGATCGTCGTCC 60.593 63.158 0.00 6.85 38.81 4.79
3748 4115 2.058001 ATGCCTGGATCGTCGTCCA 61.058 57.895 13.54 13.54 45.78 4.02
3752 4119 2.571757 TGGATCGTCGTCCAGTGC 59.428 61.111 11.11 0.00 43.20 4.40
3753 4120 2.202756 GGATCGTCGTCCAGTGCC 60.203 66.667 8.44 0.00 38.20 5.01
3754 4121 2.711922 GGATCGTCGTCCAGTGCCT 61.712 63.158 8.44 0.00 38.20 4.75
3755 4122 1.215647 GATCGTCGTCCAGTGCCTT 59.784 57.895 0.00 0.00 0.00 4.35
3756 4123 0.389948 GATCGTCGTCCAGTGCCTTT 60.390 55.000 0.00 0.00 0.00 3.11
3757 4124 0.034896 ATCGTCGTCCAGTGCCTTTT 59.965 50.000 0.00 0.00 0.00 2.27
3758 4125 0.878523 TCGTCGTCCAGTGCCTTTTG 60.879 55.000 0.00 0.00 0.00 2.44
3759 4126 1.282875 GTCGTCCAGTGCCTTTTGC 59.717 57.895 0.00 0.00 41.77 3.68
3770 4137 1.701704 GCCTTTTGCACGAATCTTGG 58.298 50.000 0.00 0.00 40.77 3.61
3771 4138 1.701704 CCTTTTGCACGAATCTTGGC 58.298 50.000 0.00 0.00 0.00 4.52
3772 4139 1.000385 CCTTTTGCACGAATCTTGGCA 60.000 47.619 0.00 0.00 0.00 4.92
3773 4140 2.053627 CTTTTGCACGAATCTTGGCAC 58.946 47.619 0.00 0.00 35.74 5.01
3774 4141 0.040514 TTTGCACGAATCTTGGCACG 60.041 50.000 0.00 0.00 35.74 5.34
3775 4142 0.882484 TTGCACGAATCTTGGCACGA 60.882 50.000 0.00 0.00 35.74 4.35
3776 4143 0.882484 TGCACGAATCTTGGCACGAA 60.882 50.000 0.00 0.00 0.00 3.85
3777 4144 0.237235 GCACGAATCTTGGCACGAAA 59.763 50.000 0.00 0.00 0.00 3.46
3778 4145 1.334599 GCACGAATCTTGGCACGAAAA 60.335 47.619 0.00 0.00 0.00 2.29
3779 4146 2.856720 GCACGAATCTTGGCACGAAAAA 60.857 45.455 0.00 0.00 0.00 1.94
3780 4147 2.973224 CACGAATCTTGGCACGAAAAAG 59.027 45.455 0.00 0.00 0.00 2.27
3781 4148 2.031157 ACGAATCTTGGCACGAAAAAGG 60.031 45.455 0.00 0.00 0.00 3.11
3782 4149 2.031157 CGAATCTTGGCACGAAAAAGGT 60.031 45.455 0.00 0.00 0.00 3.50
3783 4150 3.550030 CGAATCTTGGCACGAAAAAGGTT 60.550 43.478 0.00 0.00 0.00 3.50
3784 4151 2.861462 TCTTGGCACGAAAAAGGTTG 57.139 45.000 0.00 0.00 0.00 3.77
3785 4152 2.370349 TCTTGGCACGAAAAAGGTTGA 58.630 42.857 0.00 0.00 0.00 3.18
3786 4153 2.955660 TCTTGGCACGAAAAAGGTTGAT 59.044 40.909 0.00 0.00 0.00 2.57
3787 4154 3.383185 TCTTGGCACGAAAAAGGTTGATT 59.617 39.130 0.00 0.00 0.00 2.57
3788 4155 3.810310 TGGCACGAAAAAGGTTGATTT 57.190 38.095 0.00 0.00 0.00 2.17
3789 4156 4.130286 TGGCACGAAAAAGGTTGATTTT 57.870 36.364 0.00 0.00 33.86 1.82
3790 4157 4.508662 TGGCACGAAAAAGGTTGATTTTT 58.491 34.783 0.00 0.00 43.28 1.94
3807 4174 1.529226 TTTTGTGCCACGTAGGATGG 58.471 50.000 8.04 0.00 41.22 3.51
3808 4175 0.322098 TTTGTGCCACGTAGGATGGG 60.322 55.000 8.04 0.00 41.22 4.00
3809 4176 2.189521 GTGCCACGTAGGATGGGG 59.810 66.667 8.04 0.00 41.22 4.96
3810 4177 3.792736 TGCCACGTAGGATGGGGC 61.793 66.667 4.93 4.93 44.82 5.80
3811 4178 3.480133 GCCACGTAGGATGGGGCT 61.480 66.667 4.64 0.00 41.39 5.19
3812 4179 2.505982 CCACGTAGGATGGGGCTG 59.494 66.667 0.00 0.00 41.22 4.85
3813 4180 2.505982 CACGTAGGATGGGGCTGG 59.494 66.667 0.00 0.00 0.00 4.85
3814 4181 2.040606 ACGTAGGATGGGGCTGGT 59.959 61.111 0.00 0.00 0.00 4.00
3815 4182 2.367202 ACGTAGGATGGGGCTGGTG 61.367 63.158 0.00 0.00 0.00 4.17
3816 4183 2.367202 CGTAGGATGGGGCTGGTGT 61.367 63.158 0.00 0.00 0.00 4.16
3817 4184 1.224592 GTAGGATGGGGCTGGTGTG 59.775 63.158 0.00 0.00 0.00 3.82
3818 4185 1.229820 TAGGATGGGGCTGGTGTGT 60.230 57.895 0.00 0.00 0.00 3.72
3819 4186 1.561769 TAGGATGGGGCTGGTGTGTG 61.562 60.000 0.00 0.00 0.00 3.82
3820 4187 2.361610 GATGGGGCTGGTGTGTGG 60.362 66.667 0.00 0.00 0.00 4.17
3821 4188 3.944250 GATGGGGCTGGTGTGTGGG 62.944 68.421 0.00 0.00 0.00 4.61
3826 4193 3.964875 GCTGGTGTGTGGGCGTTG 61.965 66.667 0.00 0.00 0.00 4.10
3827 4194 3.286751 CTGGTGTGTGGGCGTTGG 61.287 66.667 0.00 0.00 0.00 3.77
3828 4195 3.765894 CTGGTGTGTGGGCGTTGGA 62.766 63.158 0.00 0.00 0.00 3.53
3829 4196 2.517402 GGTGTGTGGGCGTTGGAA 60.517 61.111 0.00 0.00 0.00 3.53
3830 4197 2.122167 GGTGTGTGGGCGTTGGAAA 61.122 57.895 0.00 0.00 0.00 3.13
3831 4198 1.358759 GTGTGTGGGCGTTGGAAAG 59.641 57.895 0.00 0.00 0.00 2.62
3832 4199 1.077357 TGTGTGGGCGTTGGAAAGT 60.077 52.632 0.00 0.00 0.00 2.66
3833 4200 0.681564 TGTGTGGGCGTTGGAAAGTT 60.682 50.000 0.00 0.00 0.00 2.66
3834 4201 0.458260 GTGTGGGCGTTGGAAAGTTT 59.542 50.000 0.00 0.00 0.00 2.66
3835 4202 0.457851 TGTGGGCGTTGGAAAGTTTG 59.542 50.000 0.00 0.00 0.00 2.93
3836 4203 0.874175 GTGGGCGTTGGAAAGTTTGC 60.874 55.000 0.00 0.00 0.00 3.68
3837 4204 1.300620 GGGCGTTGGAAAGTTTGCC 60.301 57.895 4.53 5.08 41.72 4.52
3838 4205 1.300620 GGCGTTGGAAAGTTTGCCC 60.301 57.895 4.53 0.00 36.51 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
597 619 0.257616 ACTCTCTTCCTCCTCCCGAG 59.742 60.000 0.00 0.00 38.46 4.63
599 621 0.753848 GGACTCTCTTCCTCCTCCCG 60.754 65.000 0.00 0.00 32.24 5.14
667 704 3.753294 TTCTGTTCTGGACTTCTGGTC 57.247 47.619 0.00 0.00 43.79 4.02
668 705 4.505742 GGATTTCTGTTCTGGACTTCTGGT 60.506 45.833 0.00 0.00 0.00 4.00
669 706 4.006319 GGATTTCTGTTCTGGACTTCTGG 58.994 47.826 0.00 0.00 0.00 3.86
670 707 4.645535 TGGATTTCTGTTCTGGACTTCTG 58.354 43.478 0.00 0.00 0.00 3.02
688 734 0.248289 GCCATGCTGCTGTTTTGGAT 59.752 50.000 0.00 0.00 0.00 3.41
689 735 1.667151 GCCATGCTGCTGTTTTGGA 59.333 52.632 0.00 0.00 0.00 3.53
690 736 1.735198 CGCCATGCTGCTGTTTTGG 60.735 57.895 0.00 1.83 0.00 3.28
691 737 1.735198 CCGCCATGCTGCTGTTTTG 60.735 57.895 0.00 0.00 0.00 2.44
692 738 2.652530 CCGCCATGCTGCTGTTTT 59.347 55.556 0.00 0.00 0.00 2.43
741 796 4.208686 GTCTAGTGCGGGAGGGCG 62.209 72.222 0.00 0.00 35.06 6.13
742 797 2.760385 AGTCTAGTGCGGGAGGGC 60.760 66.667 0.00 0.00 0.00 5.19
743 798 2.128507 GGAGTCTAGTGCGGGAGGG 61.129 68.421 0.00 0.00 0.00 4.30
744 799 2.482333 CGGAGTCTAGTGCGGGAGG 61.482 68.421 0.00 0.00 0.00 4.30
745 800 3.111939 CGGAGTCTAGTGCGGGAG 58.888 66.667 0.00 0.00 0.00 4.30
746 801 3.138798 GCGGAGTCTAGTGCGGGA 61.139 66.667 0.89 0.00 0.00 5.14
747 802 4.208686 GGCGGAGTCTAGTGCGGG 62.209 72.222 0.89 0.00 0.00 6.13
748 803 4.554363 CGGCGGAGTCTAGTGCGG 62.554 72.222 0.00 0.00 0.00 5.69
750 805 4.874977 GGCGGCGGAGTCTAGTGC 62.875 72.222 9.78 0.00 0.00 4.40
751 806 4.554363 CGGCGGCGGAGTCTAGTG 62.554 72.222 25.36 0.00 0.00 2.74
789 862 3.285215 GAGGACGGCGCGGATCTA 61.285 66.667 22.76 0.00 0.00 1.98
827 904 4.277593 CGGAGGAGCAGCGCTAGG 62.278 72.222 10.99 0.00 39.88 3.02
870 947 2.078392 GGAAACCTCCGAAACGCAATA 58.922 47.619 0.00 0.00 30.03 1.90
871 948 0.879090 GGAAACCTCCGAAACGCAAT 59.121 50.000 0.00 0.00 30.03 3.56
880 957 2.667473 AACGTATCTGGAAACCTCCG 57.333 50.000 0.00 0.00 45.85 4.63
934 1011 4.162690 AGGATCAAGACCGCCGGC 62.163 66.667 19.07 19.07 0.00 6.13
963 1040 2.041686 GCGACAGACGAGGAGGACT 61.042 63.158 0.00 0.00 45.77 3.85
1138 1222 6.352016 TGTCCTGATCTAATCATCTAAGGC 57.648 41.667 0.00 0.00 38.85 4.35
1157 1241 2.222886 TCGATCGAGAAGAGGATGTCC 58.777 52.381 15.15 0.00 0.00 4.02
1159 1243 2.556189 CCATCGATCGAGAAGAGGATGT 59.444 50.000 23.84 0.00 39.83 3.06
1160 1244 2.816672 TCCATCGATCGAGAAGAGGATG 59.183 50.000 23.84 13.37 40.52 3.51
1161 1245 3.147553 TCCATCGATCGAGAAGAGGAT 57.852 47.619 23.84 0.34 0.00 3.24
1162 1246 2.640316 TCCATCGATCGAGAAGAGGA 57.360 50.000 23.84 19.65 0.00 3.71
1168 1252 4.009370 ACTCAGTATCCATCGATCGAGA 57.991 45.455 23.84 16.15 0.00 4.04
1203 1304 2.884207 GATCGACGGTTGGACGGC 60.884 66.667 0.00 0.00 38.87 5.68
1204 1305 1.804326 GTGATCGACGGTTGGACGG 60.804 63.158 0.00 0.00 38.39 4.79
1205 1306 0.457853 ATGTGATCGACGGTTGGACG 60.458 55.000 0.00 0.00 40.31 4.79
1208 1309 1.720805 TTGATGTGATCGACGGTTGG 58.279 50.000 0.00 0.00 0.00 3.77
1209 1310 2.159707 GGTTTGATGTGATCGACGGTTG 60.160 50.000 0.00 0.00 0.00 3.77
1210 1311 2.073816 GGTTTGATGTGATCGACGGTT 58.926 47.619 0.00 0.00 0.00 4.44
1211 1312 1.674817 GGGTTTGATGTGATCGACGGT 60.675 52.381 0.00 0.00 0.00 4.83
1212 1313 1.006832 GGGTTTGATGTGATCGACGG 58.993 55.000 0.00 0.00 0.00 4.79
1213 1314 1.006832 GGGGTTTGATGTGATCGACG 58.993 55.000 0.00 0.00 0.00 5.12
1220 1327 0.606401 AGCTCACGGGGTTTGATGTG 60.606 55.000 0.00 0.00 0.00 3.21
1226 1333 1.247567 CATTCAAGCTCACGGGGTTT 58.752 50.000 0.00 0.00 0.00 3.27
1237 1373 2.704725 TTCTGAAACCGCATTCAAGC 57.295 45.000 3.24 0.00 38.75 4.01
1259 1395 2.838202 TCTTAAAGAGGAACCCGCAGAT 59.162 45.455 0.00 0.00 0.00 2.90
1260 1396 2.253610 TCTTAAAGAGGAACCCGCAGA 58.746 47.619 0.00 0.00 0.00 4.26
1261 1397 2.762535 TCTTAAAGAGGAACCCGCAG 57.237 50.000 0.00 0.00 0.00 5.18
1262 1398 3.713826 ATTCTTAAAGAGGAACCCGCA 57.286 42.857 0.00 0.00 0.00 5.69
1263 1399 3.554731 CGTATTCTTAAAGAGGAACCCGC 59.445 47.826 0.00 0.00 0.00 6.13
1264 1400 5.002464 TCGTATTCTTAAAGAGGAACCCG 57.998 43.478 0.00 0.00 0.00 5.28
1271 1407 7.717568 TCCAATCTCCTCGTATTCTTAAAGAG 58.282 38.462 0.00 0.00 0.00 2.85
1272 1408 7.655521 TCCAATCTCCTCGTATTCTTAAAGA 57.344 36.000 0.00 0.00 0.00 2.52
1273 1409 7.386299 CCATCCAATCTCCTCGTATTCTTAAAG 59.614 40.741 0.00 0.00 0.00 1.85
1282 1456 4.180377 AGTACCATCCAATCTCCTCGTA 57.820 45.455 0.00 0.00 0.00 3.43
1284 1458 3.243907 GGAAGTACCATCCAATCTCCTCG 60.244 52.174 9.81 0.00 36.92 4.63
1285 1459 3.243907 CGGAAGTACCATCCAATCTCCTC 60.244 52.174 13.96 0.00 36.74 3.71
1304 1478 1.367471 CAGCACAAGACAGGACGGA 59.633 57.895 0.00 0.00 0.00 4.69
1305 1479 1.069765 ACAGCACAAGACAGGACGG 59.930 57.895 0.00 0.00 0.00 4.79
1306 1480 1.224069 CCACAGCACAAGACAGGACG 61.224 60.000 0.00 0.00 0.00 4.79
1307 1481 0.106708 TCCACAGCACAAGACAGGAC 59.893 55.000 0.00 0.00 0.00 3.85
1309 1483 1.808945 GATTCCACAGCACAAGACAGG 59.191 52.381 0.00 0.00 0.00 4.00
1315 1489 2.361757 CAAACCAGATTCCACAGCACAA 59.638 45.455 0.00 0.00 0.00 3.33
1319 1493 1.200948 GAGCAAACCAGATTCCACAGC 59.799 52.381 0.00 0.00 0.00 4.40
1322 1496 3.055094 TCCTAGAGCAAACCAGATTCCAC 60.055 47.826 0.00 0.00 0.00 4.02
1324 1498 3.914426 TCCTAGAGCAAACCAGATTCC 57.086 47.619 0.00 0.00 0.00 3.01
1326 1500 7.836183 ACAAATATTCCTAGAGCAAACCAGATT 59.164 33.333 0.00 0.00 0.00 2.40
1327 1501 7.349598 ACAAATATTCCTAGAGCAAACCAGAT 58.650 34.615 0.00 0.00 0.00 2.90
1328 1502 6.721318 ACAAATATTCCTAGAGCAAACCAGA 58.279 36.000 0.00 0.00 0.00 3.86
1329 1503 7.396540 AACAAATATTCCTAGAGCAAACCAG 57.603 36.000 0.00 0.00 0.00 4.00
1330 1504 8.871629 TTAACAAATATTCCTAGAGCAAACCA 57.128 30.769 0.00 0.00 0.00 3.67
1339 1524 9.956720 CTTGCTGGATTTAACAAATATTCCTAG 57.043 33.333 0.00 0.00 0.00 3.02
1352 1537 4.640364 CAAAAAGGGCTTGCTGGATTTAA 58.360 39.130 0.00 0.00 0.00 1.52
1390 1577 9.975218 ACCCACTTGTTATCTAACATTATCTTT 57.025 29.630 3.76 0.00 44.72 2.52
1392 1579 9.975218 AAACCCACTTGTTATCTAACATTATCT 57.025 29.630 3.76 0.00 44.72 1.98
1397 1584 7.833285 ACAAAACCCACTTGTTATCTAACAT 57.167 32.000 3.76 0.00 44.72 2.71
1415 1614 7.012044 TGCTTTTGAGGAGTACTAGAACAAAAC 59.988 37.037 17.54 15.47 34.01 2.43
1428 1627 3.777106 TCTGATGTGCTTTTGAGGAGT 57.223 42.857 0.00 0.00 0.00 3.85
1433 1632 5.335897 GGCAAACTATCTGATGTGCTTTTGA 60.336 40.000 0.00 0.00 32.61 2.69
1443 1642 5.316167 TCACAACAAGGCAAACTATCTGAT 58.684 37.500 0.00 0.00 0.00 2.90
1476 1675 2.638480 AACAGTTGCAGCTGGACTTA 57.362 45.000 30.59 0.00 40.59 2.24
1477 1676 1.678101 GAAACAGTTGCAGCTGGACTT 59.322 47.619 30.59 20.93 40.59 3.01
1485 1688 4.095410 TGTTGTGAAGAAACAGTTGCAG 57.905 40.909 0.00 0.00 32.71 4.41
1488 1691 5.512788 GTGTGATGTTGTGAAGAAACAGTTG 59.487 40.000 0.00 0.00 40.64 3.16
1501 1704 6.769512 ACAGATAAGGTAAGTGTGATGTTGT 58.230 36.000 0.00 0.00 0.00 3.32
1516 1719 5.780793 AGCTATGGTAAGGGTACAGATAAGG 59.219 44.000 0.00 0.00 31.21 2.69
1535 1738 3.235200 GGTCAGTATCAGGGTCAGCTAT 58.765 50.000 0.00 0.00 0.00 2.97
1583 1786 9.965824 GAAAACCAAGAAGAGAAACATTTGATA 57.034 29.630 0.00 0.00 0.00 2.15
1613 1816 3.378339 ACACGAACAAGGAACGAAGTAG 58.622 45.455 0.00 0.00 45.00 2.57
1614 1817 3.441496 ACACGAACAAGGAACGAAGTA 57.559 42.857 0.00 0.00 45.00 2.24
1636 1839 4.621991 ACATGATAAGACATAGGTGACGC 58.378 43.478 0.00 0.00 0.00 5.19
1637 1840 6.510157 GCAAACATGATAAGACATAGGTGACG 60.510 42.308 0.00 0.00 0.00 4.35
1649 1852 4.530875 AGAGGGGAAGCAAACATGATAAG 58.469 43.478 0.00 0.00 0.00 1.73
1655 1858 2.309755 TGATGAGAGGGGAAGCAAACAT 59.690 45.455 0.00 0.00 0.00 2.71
1730 1933 3.403038 CGATAAATCCACACATCCCTCC 58.597 50.000 0.00 0.00 0.00 4.30
1741 1944 1.562008 TGTTCCCCTGCGATAAATCCA 59.438 47.619 0.00 0.00 0.00 3.41
1750 1953 2.099098 GGACAATATTTGTTCCCCTGCG 59.901 50.000 0.00 0.00 45.52 5.18
1752 1955 4.599041 TCAGGACAATATTTGTTCCCCTG 58.401 43.478 15.35 15.35 46.51 4.45
1786 1989 8.970020 TGCTCATCCAAAATTAACAACTCATAT 58.030 29.630 0.00 0.00 0.00 1.78
1791 1994 6.400568 CCATGCTCATCCAAAATTAACAACT 58.599 36.000 0.00 0.00 0.00 3.16
1800 2003 2.323999 AACCCCATGCTCATCCAAAA 57.676 45.000 0.00 0.00 0.00 2.44
1815 2018 9.778741 TTCATGTTCACTCTATCATAATAACCC 57.221 33.333 0.00 0.00 0.00 4.11
1826 2034 6.384015 TGGGATGTACTTCATGTTCACTCTAT 59.616 38.462 10.60 0.00 36.83 1.98
1833 2041 3.378427 GCCTTGGGATGTACTTCATGTTC 59.622 47.826 10.60 0.00 36.83 3.18
1841 2049 1.972660 GAGCCGCCTTGGGATGTACT 61.973 60.000 0.00 0.00 38.63 2.73
1842 2050 1.523938 GAGCCGCCTTGGGATGTAC 60.524 63.158 0.00 0.00 38.63 2.90
1843 2051 1.271840 AAGAGCCGCCTTGGGATGTA 61.272 55.000 0.00 0.00 38.63 2.29
1844 2052 2.543067 GAAGAGCCGCCTTGGGATGT 62.543 60.000 0.00 0.00 38.63 3.06
2190 2412 1.613925 TGTAGCGTCAGAAGTTGAGCT 59.386 47.619 0.00 0.00 40.74 4.09
2229 2451 0.911525 AGCCACTGCCACATCCTACT 60.912 55.000 0.00 0.00 38.69 2.57
2247 2469 5.781210 TGGCTAGAGAAGTGATGACATAG 57.219 43.478 0.00 0.00 0.00 2.23
2391 2613 4.270008 TCTCAAGTCCTGACACGATATCA 58.730 43.478 3.12 0.00 0.00 2.15
2397 2619 1.787155 CGTTTCTCAAGTCCTGACACG 59.213 52.381 0.00 0.00 0.00 4.49
2406 2628 1.541233 CCAGCCAGACGTTTCTCAAGT 60.541 52.381 0.00 0.00 0.00 3.16
2427 2649 3.067883 TCACAACAACCACATCAACCATG 59.932 43.478 0.00 0.00 38.64 3.66
2559 2781 3.418068 GACAGCAGCTCACGCACC 61.418 66.667 0.00 0.00 39.10 5.01
2565 2787 2.224606 CCTTTTTCTGACAGCAGCTCA 58.775 47.619 0.00 0.00 42.01 4.26
2586 2808 3.550437 AGGGCAATCATGTAGAGACAC 57.450 47.619 0.00 0.00 38.76 3.67
2661 2883 2.540101 CCTCTTCAACAGAACACGTGAC 59.460 50.000 25.01 15.43 0.00 3.67
2664 2886 2.093658 ACACCTCTTCAACAGAACACGT 60.094 45.455 0.00 0.00 0.00 4.49
2712 2934 2.086869 GCAGCATCTTGCCAGAACTTA 58.913 47.619 0.00 0.00 46.52 2.24
2824 3046 0.250467 TGAGGTCAAGAACTGCCAGC 60.250 55.000 0.00 0.00 0.00 4.85
2840 3062 1.912043 AGGAGGGTCCAAACTGATGAG 59.088 52.381 0.00 0.00 39.61 2.90
2876 3098 1.754226 TCGCAAAGGTTTCCTTGCTTT 59.246 42.857 15.21 0.00 43.92 3.51
2942 3168 0.036858 GACAGGCAGGTCTGAACTCC 60.037 60.000 8.06 0.00 38.11 3.85
2974 3200 3.117888 AGTTCACCATGTCAGTCTGGTTT 60.118 43.478 0.00 0.00 43.21 3.27
3003 3229 3.949586 TGGGTTGCTCATTGGATCATA 57.050 42.857 0.00 0.00 0.00 2.15
3004 3230 2.762327 GTTGGGTTGCTCATTGGATCAT 59.238 45.455 0.00 0.00 0.00 2.45
3012 3238 1.559682 ACGATAGGTTGGGTTGCTCAT 59.440 47.619 0.00 0.00 43.77 2.90
3020 3246 4.571919 TGTTTCAACTACGATAGGTTGGG 58.428 43.478 0.00 0.00 41.91 4.12
3022 3248 6.814644 TGGTATGTTTCAACTACGATAGGTTG 59.185 38.462 0.00 0.00 42.66 3.77
3036 3262 7.330946 CGACAAGAGAAAGTATGGTATGTTTCA 59.669 37.037 0.00 0.00 32.38 2.69
3038 3264 6.594159 CCGACAAGAGAAAGTATGGTATGTTT 59.406 38.462 0.00 0.00 0.00 2.83
3041 3267 5.661458 ACCGACAAGAGAAAGTATGGTATG 58.339 41.667 0.00 0.00 0.00 2.39
3048 3274 5.464389 GCTGTTTTACCGACAAGAGAAAGTA 59.536 40.000 0.00 0.00 0.00 2.24
3057 3283 3.188159 AGACAGCTGTTTTACCGACAA 57.812 42.857 22.65 0.00 0.00 3.18
3091 3317 4.808895 ACATATACACACTAACACGCATGG 59.191 41.667 0.00 0.00 0.00 3.66
3120 3346 4.095483 ACGAAGGCAACAGATTCATTCATC 59.905 41.667 0.00 0.00 41.41 2.92
3121 3347 4.012374 ACGAAGGCAACAGATTCATTCAT 58.988 39.130 0.00 0.00 41.41 2.57
3122 3348 3.189080 CACGAAGGCAACAGATTCATTCA 59.811 43.478 0.00 0.00 41.41 2.57
3123 3349 3.436704 TCACGAAGGCAACAGATTCATTC 59.563 43.478 0.00 0.00 41.41 2.67
3133 3359 1.601903 TGACACATTCACGAAGGCAAC 59.398 47.619 0.00 0.00 0.00 4.17
3142 3368 8.800972 CAATTTAACAGCATATGACACATTCAC 58.199 33.333 6.97 0.00 36.92 3.18
3151 3377 6.435430 AAGTCGCAATTTAACAGCATATGA 57.565 33.333 6.97 0.00 0.00 2.15
3156 3382 4.036262 AGACAAAGTCGCAATTTAACAGCA 59.964 37.500 0.00 0.00 37.67 4.41
3169 3395 3.018598 TCTCTCTGCAAGACAAAGTCG 57.981 47.619 0.00 0.00 38.67 4.18
3171 3397 4.414337 ACTTCTCTCTGCAAGACAAAGT 57.586 40.909 11.77 11.77 38.67 2.66
3175 3401 3.801638 GCTGAACTTCTCTCTGCAAGACA 60.802 47.826 0.00 0.00 38.67 3.41
3191 3417 1.129437 GATCCAGAAGTTGCGCTGAAC 59.871 52.381 9.73 5.61 34.06 3.18
3195 3421 0.322975 ACAGATCCAGAAGTTGCGCT 59.677 50.000 9.73 0.00 0.00 5.92
3198 3424 1.527034 TGCACAGATCCAGAAGTTGC 58.473 50.000 0.00 0.00 0.00 4.17
3256 3530 3.750130 GGAGCAAGCATACCATCATACTG 59.250 47.826 0.00 0.00 0.00 2.74
3261 3620 6.127054 GGTATATAGGAGCAAGCATACCATCA 60.127 42.308 10.41 0.00 38.39 3.07
3340 3701 4.735369 TCACCACCAATTACCTCAAACAT 58.265 39.130 0.00 0.00 0.00 2.71
3394 3755 2.288763 TGTTCGAAGCTGCATGTAGACA 60.289 45.455 15.68 5.85 0.00 3.41
3400 3761 1.736126 ACATCTGTTCGAAGCTGCATG 59.264 47.619 0.00 0.00 0.00 4.06
3439 3803 3.022406 GAGGAAAGCTCATGGCAGATTT 58.978 45.455 8.58 3.51 44.79 2.17
3490 3854 9.698309 CGATCAGGTTTAGTAAATATGATCTGT 57.302 33.333 28.39 12.93 39.97 3.41
3503 3867 5.661056 TTCTGTGATCGATCAGGTTTAGT 57.339 39.130 27.95 0.00 37.51 2.24
3518 3885 3.118261 ACTCCTTGCTGAAGTTTCTGTGA 60.118 43.478 1.59 0.00 0.00 3.58
3576 3943 7.690256 ACCGGCTATGGAAGAATATAAATCTT 58.310 34.615 0.00 4.34 39.76 2.40
3577 3944 7.259088 ACCGGCTATGGAAGAATATAAATCT 57.741 36.000 0.00 0.00 0.00 2.40
3578 3945 8.475639 TCTACCGGCTATGGAAGAATATAAATC 58.524 37.037 0.00 0.00 0.00 2.17
3579 3946 8.375493 TCTACCGGCTATGGAAGAATATAAAT 57.625 34.615 0.00 0.00 0.00 1.40
3580 3947 7.786046 TCTACCGGCTATGGAAGAATATAAA 57.214 36.000 0.00 0.00 0.00 1.40
3581 3948 7.786046 TTCTACCGGCTATGGAAGAATATAA 57.214 36.000 0.00 0.00 0.00 0.98
3582 3949 7.786046 TTTCTACCGGCTATGGAAGAATATA 57.214 36.000 0.00 0.00 0.00 0.86
3583 3950 6.681729 TTTCTACCGGCTATGGAAGAATAT 57.318 37.500 0.00 0.00 0.00 1.28
3584 3951 6.126997 TGTTTTCTACCGGCTATGGAAGAATA 60.127 38.462 0.00 0.00 0.00 1.75
3585 3952 5.123936 GTTTTCTACCGGCTATGGAAGAAT 58.876 41.667 0.00 0.00 0.00 2.40
3586 3953 4.020039 TGTTTTCTACCGGCTATGGAAGAA 60.020 41.667 0.00 0.00 0.00 2.52
3587 3954 3.516300 TGTTTTCTACCGGCTATGGAAGA 59.484 43.478 0.00 0.00 0.00 2.87
3588 3955 3.869065 TGTTTTCTACCGGCTATGGAAG 58.131 45.455 0.00 0.00 0.00 3.46
3589 3956 3.985019 TGTTTTCTACCGGCTATGGAA 57.015 42.857 0.00 0.00 0.00 3.53
3590 3957 3.985019 TTGTTTTCTACCGGCTATGGA 57.015 42.857 0.00 0.00 0.00 3.41
3591 3958 4.216687 TGTTTTGTTTTCTACCGGCTATGG 59.783 41.667 0.00 0.00 0.00 2.74
3592 3959 5.365403 TGTTTTGTTTTCTACCGGCTATG 57.635 39.130 0.00 0.00 0.00 2.23
3593 3960 6.394025 TTTGTTTTGTTTTCTACCGGCTAT 57.606 33.333 0.00 0.00 0.00 2.97
3594 3961 5.831702 TTTGTTTTGTTTTCTACCGGCTA 57.168 34.783 0.00 0.00 0.00 3.93
3595 3962 4.722361 TTTGTTTTGTTTTCTACCGGCT 57.278 36.364 0.00 0.00 0.00 5.52
3596 3963 5.977171 AATTTGTTTTGTTTTCTACCGGC 57.023 34.783 0.00 0.00 0.00 6.13
3597 3964 7.169982 TGCATAATTTGTTTTGTTTTCTACCGG 59.830 33.333 0.00 0.00 0.00 5.28
3598 3965 8.066668 TGCATAATTTGTTTTGTTTTCTACCG 57.933 30.769 0.00 0.00 0.00 4.02
3599 3966 9.862585 CTTGCATAATTTGTTTTGTTTTCTACC 57.137 29.630 0.00 0.00 0.00 3.18
3602 3969 9.598517 TCTCTTGCATAATTTGTTTTGTTTTCT 57.401 25.926 0.00 0.00 0.00 2.52
3605 3972 9.545105 TGATCTCTTGCATAATTTGTTTTGTTT 57.455 25.926 0.00 0.00 0.00 2.83
3606 3973 9.545105 TTGATCTCTTGCATAATTTGTTTTGTT 57.455 25.926 0.00 0.00 0.00 2.83
3607 3974 9.199982 CTTGATCTCTTGCATAATTTGTTTTGT 57.800 29.630 0.00 0.00 0.00 2.83
3608 3975 9.199982 ACTTGATCTCTTGCATAATTTGTTTTG 57.800 29.630 0.00 0.00 0.00 2.44
3609 3976 9.768662 AACTTGATCTCTTGCATAATTTGTTTT 57.231 25.926 0.00 0.00 0.00 2.43
3619 3986 8.742777 TGCTAAAATTAACTTGATCTCTTGCAT 58.257 29.630 0.00 0.00 0.00 3.96
3620 3987 8.109705 TGCTAAAATTAACTTGATCTCTTGCA 57.890 30.769 0.00 0.00 0.00 4.08
3621 3988 8.454106 TCTGCTAAAATTAACTTGATCTCTTGC 58.546 33.333 0.00 0.00 0.00 4.01
3622 3989 9.985318 CTCTGCTAAAATTAACTTGATCTCTTG 57.015 33.333 0.00 0.00 0.00 3.02
3623 3990 9.732130 ACTCTGCTAAAATTAACTTGATCTCTT 57.268 29.630 0.00 0.00 0.00 2.85
3624 3991 9.732130 AACTCTGCTAAAATTAACTTGATCTCT 57.268 29.630 0.00 0.00 0.00 3.10
3625 3992 9.766277 CAACTCTGCTAAAATTAACTTGATCTC 57.234 33.333 0.00 0.00 0.00 2.75
3626 3993 8.734386 CCAACTCTGCTAAAATTAACTTGATCT 58.266 33.333 0.00 0.00 0.00 2.75
3627 3994 8.730680 TCCAACTCTGCTAAAATTAACTTGATC 58.269 33.333 0.00 0.00 0.00 2.92
3628 3995 8.635765 TCCAACTCTGCTAAAATTAACTTGAT 57.364 30.769 0.00 0.00 0.00 2.57
3629 3996 8.635765 ATCCAACTCTGCTAAAATTAACTTGA 57.364 30.769 0.00 0.00 0.00 3.02
3630 3997 7.970614 GGATCCAACTCTGCTAAAATTAACTTG 59.029 37.037 6.95 0.00 0.00 3.16
3631 3998 7.890655 AGGATCCAACTCTGCTAAAATTAACTT 59.109 33.333 15.82 0.00 0.00 2.66
3632 3999 7.406104 AGGATCCAACTCTGCTAAAATTAACT 58.594 34.615 15.82 0.00 0.00 2.24
3633 4000 7.554476 AGAGGATCCAACTCTGCTAAAATTAAC 59.446 37.037 15.82 0.00 43.35 2.01
3634 4001 7.633789 AGAGGATCCAACTCTGCTAAAATTAA 58.366 34.615 15.82 0.00 43.35 1.40
3635 4002 7.126421 AGAGAGGATCCAACTCTGCTAAAATTA 59.874 37.037 28.60 0.00 44.89 1.40
3636 4003 6.069731 AGAGAGGATCCAACTCTGCTAAAATT 60.070 38.462 28.60 11.10 44.89 1.82
3637 4004 5.428131 AGAGAGGATCCAACTCTGCTAAAAT 59.572 40.000 28.60 11.63 44.89 1.82
3638 4005 4.780021 AGAGAGGATCCAACTCTGCTAAAA 59.220 41.667 28.60 0.00 44.89 1.52
3639 4006 4.357325 AGAGAGGATCCAACTCTGCTAAA 58.643 43.478 28.60 0.00 44.89 1.85
3640 4007 3.987745 AGAGAGGATCCAACTCTGCTAA 58.012 45.455 28.60 0.00 44.89 3.09
3641 4008 3.678965 AGAGAGGATCCAACTCTGCTA 57.321 47.619 28.60 0.00 44.89 3.49
3642 4009 2.500910 CAAGAGAGGATCCAACTCTGCT 59.499 50.000 29.33 18.52 44.89 4.24
3643 4010 2.235898 ACAAGAGAGGATCCAACTCTGC 59.764 50.000 29.33 13.23 44.89 4.26
3644 4011 4.550076 AACAAGAGAGGATCCAACTCTG 57.450 45.455 29.33 24.92 44.89 3.35
3673 4040 9.410556 GGGCGTTAGACTTTTCGTATTATATTA 57.589 33.333 0.00 0.00 0.00 0.98
3674 4041 7.927629 TGGGCGTTAGACTTTTCGTATTATATT 59.072 33.333 0.00 0.00 0.00 1.28
3675 4042 7.436118 TGGGCGTTAGACTTTTCGTATTATAT 58.564 34.615 0.00 0.00 0.00 0.86
3676 4043 6.804677 TGGGCGTTAGACTTTTCGTATTATA 58.195 36.000 0.00 0.00 0.00 0.98
3677 4044 5.663456 TGGGCGTTAGACTTTTCGTATTAT 58.337 37.500 0.00 0.00 0.00 1.28
3678 4045 5.070770 TGGGCGTTAGACTTTTCGTATTA 57.929 39.130 0.00 0.00 0.00 0.98
3679 4046 3.929094 TGGGCGTTAGACTTTTCGTATT 58.071 40.909 0.00 0.00 0.00 1.89
3680 4047 3.598019 TGGGCGTTAGACTTTTCGTAT 57.402 42.857 0.00 0.00 0.00 3.06
3681 4048 3.598019 ATGGGCGTTAGACTTTTCGTA 57.402 42.857 0.00 0.00 0.00 3.43
3682 4049 2.467566 ATGGGCGTTAGACTTTTCGT 57.532 45.000 0.00 0.00 0.00 3.85
3683 4050 2.280708 CGTATGGGCGTTAGACTTTTCG 59.719 50.000 0.00 0.00 0.00 3.46
3684 4051 3.061697 CACGTATGGGCGTTAGACTTTTC 59.938 47.826 0.00 0.00 43.83 2.29
3685 4052 2.997986 CACGTATGGGCGTTAGACTTTT 59.002 45.455 0.00 0.00 43.83 2.27
3686 4053 2.028748 ACACGTATGGGCGTTAGACTTT 60.029 45.455 0.00 0.00 43.83 2.66
3687 4054 1.547372 ACACGTATGGGCGTTAGACTT 59.453 47.619 0.00 0.00 43.83 3.01
3688 4055 1.135199 CACACGTATGGGCGTTAGACT 60.135 52.381 0.00 0.00 43.83 3.24
3689 4056 1.274596 CACACGTATGGGCGTTAGAC 58.725 55.000 0.00 0.00 43.83 2.59
3690 4057 0.173935 CCACACGTATGGGCGTTAGA 59.826 55.000 4.49 0.00 43.83 2.10
3691 4058 2.673074 CCACACGTATGGGCGTTAG 58.327 57.895 4.49 0.00 43.83 2.34
3692 4059 4.915298 CCACACGTATGGGCGTTA 57.085 55.556 4.49 0.00 43.83 3.18
3709 4076 2.741211 GACGAGTTGGGGAACGCC 60.741 66.667 0.00 0.85 42.25 5.68
3710 4077 2.741211 GGACGAGTTGGGGAACGC 60.741 66.667 0.00 0.00 43.69 4.84
3711 4078 1.666872 GTGGACGAGTTGGGGAACG 60.667 63.158 0.00 0.00 0.00 3.95
3712 4079 0.036306 ATGTGGACGAGTTGGGGAAC 59.964 55.000 0.00 0.00 0.00 3.62
3713 4080 0.036164 CATGTGGACGAGTTGGGGAA 59.964 55.000 0.00 0.00 0.00 3.97
3714 4081 1.676968 CATGTGGACGAGTTGGGGA 59.323 57.895 0.00 0.00 0.00 4.81
3715 4082 2.040544 GCATGTGGACGAGTTGGGG 61.041 63.158 0.00 0.00 0.00 4.96
3716 4083 2.040544 GGCATGTGGACGAGTTGGG 61.041 63.158 0.00 0.00 0.00 4.12
3717 4084 1.003355 AGGCATGTGGACGAGTTGG 60.003 57.895 0.00 0.00 0.00 3.77
3718 4085 1.300971 CCAGGCATGTGGACGAGTTG 61.301 60.000 0.00 0.00 40.44 3.16
3719 4086 1.003355 CCAGGCATGTGGACGAGTT 60.003 57.895 0.00 0.00 40.44 3.01
3720 4087 1.913262 TCCAGGCATGTGGACGAGT 60.913 57.895 0.95 0.00 41.99 4.18
3721 4088 2.981302 TCCAGGCATGTGGACGAG 59.019 61.111 0.95 0.00 41.99 4.18
3726 4093 1.884464 CGACGATCCAGGCATGTGG 60.884 63.158 0.00 0.00 39.19 4.17
3727 4094 1.148157 GACGACGATCCAGGCATGTG 61.148 60.000 0.00 0.00 0.00 3.21
3728 4095 1.141881 GACGACGATCCAGGCATGT 59.858 57.895 0.00 0.00 0.00 3.21
3729 4096 1.592669 GGACGACGATCCAGGCATG 60.593 63.158 0.00 0.00 38.77 4.06
3730 4097 2.058001 TGGACGACGATCCAGGCAT 61.058 57.895 13.06 0.00 44.14 4.40
3731 4098 2.678580 TGGACGACGATCCAGGCA 60.679 61.111 13.06 0.00 44.14 4.75
3735 4102 2.571757 GCACTGGACGACGATCCA 59.428 61.111 15.32 15.32 46.92 3.41
3736 4103 2.202756 GGCACTGGACGACGATCC 60.203 66.667 0.00 5.67 39.45 3.36
3737 4104 0.389948 AAAGGCACTGGACGACGATC 60.390 55.000 0.00 0.00 40.86 3.69
3738 4105 0.034896 AAAAGGCACTGGACGACGAT 59.965 50.000 0.00 0.00 40.86 3.73
3739 4106 0.878523 CAAAAGGCACTGGACGACGA 60.879 55.000 0.00 0.00 40.86 4.20
3740 4107 1.569493 CAAAAGGCACTGGACGACG 59.431 57.895 0.00 0.00 40.86 5.12
3741 4108 1.282875 GCAAAAGGCACTGGACGAC 59.717 57.895 0.00 0.00 40.86 4.34
3742 4109 3.744559 GCAAAAGGCACTGGACGA 58.255 55.556 0.00 0.00 40.86 4.20
3751 4118 1.701704 CCAAGATTCGTGCAAAAGGC 58.298 50.000 0.00 0.00 45.13 4.35
3752 4119 1.000385 TGCCAAGATTCGTGCAAAAGG 60.000 47.619 0.00 0.00 0.00 3.11
3753 4120 2.053627 GTGCCAAGATTCGTGCAAAAG 58.946 47.619 0.00 0.00 35.16 2.27
3754 4121 1.599171 CGTGCCAAGATTCGTGCAAAA 60.599 47.619 0.00 0.00 35.16 2.44
3755 4122 0.040514 CGTGCCAAGATTCGTGCAAA 60.041 50.000 0.00 0.00 35.16 3.68
3756 4123 0.882484 TCGTGCCAAGATTCGTGCAA 60.882 50.000 0.00 0.00 35.16 4.08
3757 4124 0.882484 TTCGTGCCAAGATTCGTGCA 60.882 50.000 0.00 0.00 0.00 4.57
3758 4125 0.237235 TTTCGTGCCAAGATTCGTGC 59.763 50.000 0.00 0.00 0.00 5.34
3759 4126 2.679355 TTTTCGTGCCAAGATTCGTG 57.321 45.000 0.00 0.00 0.00 4.35
3760 4127 2.031157 CCTTTTTCGTGCCAAGATTCGT 60.031 45.455 0.00 0.00 0.00 3.85
3761 4128 2.031157 ACCTTTTTCGTGCCAAGATTCG 60.031 45.455 0.00 0.00 0.00 3.34
3762 4129 3.643159 ACCTTTTTCGTGCCAAGATTC 57.357 42.857 0.00 0.00 0.00 2.52
3763 4130 3.383185 TCAACCTTTTTCGTGCCAAGATT 59.617 39.130 0.00 0.00 0.00 2.40
3764 4131 2.955660 TCAACCTTTTTCGTGCCAAGAT 59.044 40.909 0.00 0.00 0.00 2.40
3765 4132 2.370349 TCAACCTTTTTCGTGCCAAGA 58.630 42.857 0.00 0.00 0.00 3.02
3766 4133 2.861462 TCAACCTTTTTCGTGCCAAG 57.139 45.000 0.00 0.00 0.00 3.61
3767 4134 3.810310 AATCAACCTTTTTCGTGCCAA 57.190 38.095 0.00 0.00 0.00 4.52
3768 4135 3.810310 AAATCAACCTTTTTCGTGCCA 57.190 38.095 0.00 0.00 0.00 4.92
3787 4154 1.883275 CCATCCTACGTGGCACAAAAA 59.117 47.619 19.09 0.00 44.16 1.94
3788 4155 1.529226 CCATCCTACGTGGCACAAAA 58.471 50.000 19.09 0.72 44.16 2.44
3789 4156 0.322098 CCCATCCTACGTGGCACAAA 60.322 55.000 19.09 3.45 44.16 2.83
3790 4157 1.298340 CCCATCCTACGTGGCACAA 59.702 57.895 19.09 3.85 44.16 3.33
3791 4158 2.665089 CCCCATCCTACGTGGCACA 61.665 63.158 19.09 0.00 35.35 4.57
3792 4159 2.189521 CCCCATCCTACGTGGCAC 59.810 66.667 7.79 7.79 35.35 5.01
3793 4160 3.792736 GCCCCATCCTACGTGGCA 61.793 66.667 0.00 0.00 41.76 4.92
3794 4161 3.480133 AGCCCCATCCTACGTGGC 61.480 66.667 0.00 0.00 42.48 5.01
3795 4162 2.505982 CAGCCCCATCCTACGTGG 59.494 66.667 0.00 0.00 36.47 4.94
3796 4163 2.367202 ACCAGCCCCATCCTACGTG 61.367 63.158 0.00 0.00 0.00 4.49
3797 4164 2.040606 ACCAGCCCCATCCTACGT 59.959 61.111 0.00 0.00 0.00 3.57
3798 4165 2.367202 ACACCAGCCCCATCCTACG 61.367 63.158 0.00 0.00 0.00 3.51
3799 4166 1.224592 CACACCAGCCCCATCCTAC 59.775 63.158 0.00 0.00 0.00 3.18
3800 4167 1.229820 ACACACCAGCCCCATCCTA 60.230 57.895 0.00 0.00 0.00 2.94
3801 4168 2.532715 ACACACCAGCCCCATCCT 60.533 61.111 0.00 0.00 0.00 3.24
3802 4169 2.361610 CACACACCAGCCCCATCC 60.362 66.667 0.00 0.00 0.00 3.51
3803 4170 2.361610 CCACACACCAGCCCCATC 60.362 66.667 0.00 0.00 0.00 3.51
3804 4171 3.983420 CCCACACACCAGCCCCAT 61.983 66.667 0.00 0.00 0.00 4.00
3809 4176 3.964875 CAACGCCCACACACCAGC 61.965 66.667 0.00 0.00 0.00 4.85
3810 4177 3.286751 CCAACGCCCACACACCAG 61.287 66.667 0.00 0.00 0.00 4.00
3811 4178 2.838748 TTTCCAACGCCCACACACCA 62.839 55.000 0.00 0.00 0.00 4.17
3812 4179 2.070654 CTTTCCAACGCCCACACACC 62.071 60.000 0.00 0.00 0.00 4.16
3813 4180 1.358759 CTTTCCAACGCCCACACAC 59.641 57.895 0.00 0.00 0.00 3.82
3814 4181 0.681564 AACTTTCCAACGCCCACACA 60.682 50.000 0.00 0.00 0.00 3.72
3815 4182 0.458260 AAACTTTCCAACGCCCACAC 59.542 50.000 0.00 0.00 0.00 3.82
3816 4183 0.457851 CAAACTTTCCAACGCCCACA 59.542 50.000 0.00 0.00 0.00 4.17
3817 4184 0.874175 GCAAACTTTCCAACGCCCAC 60.874 55.000 0.00 0.00 0.00 4.61
3818 4185 1.439644 GCAAACTTTCCAACGCCCA 59.560 52.632 0.00 0.00 0.00 5.36
3819 4186 1.300620 GGCAAACTTTCCAACGCCC 60.301 57.895 0.00 0.00 33.31 6.13
3820 4187 1.300620 GGGCAAACTTTCCAACGCC 60.301 57.895 0.00 0.00 38.85 5.68
3821 4188 4.336581 GGGCAAACTTTCCAACGC 57.663 55.556 0.00 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.