Multiple sequence alignment - TraesCS5A01G484700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G484700 chr5A 100.000 6253 0 0 1 6253 655997750 655991498 0.000000e+00 11548.0
1 TraesCS5A01G484700 chr5A 87.559 635 69 6 5624 6253 655461807 655462436 0.000000e+00 726.0
2 TraesCS5A01G484700 chr5A 89.226 297 26 6 544 839 649710274 649710565 3.560000e-97 366.0
3 TraesCS5A01G484700 chr5A 87.541 305 32 5 542 842 641117381 641117079 1.290000e-91 348.0
4 TraesCS5A01G484700 chr5A 83.264 239 38 2 5983 6220 597686606 597686843 1.060000e-52 219.0
5 TraesCS5A01G484700 chr5A 95.161 124 3 3 1 122 688512234 688512356 6.400000e-45 193.0
6 TraesCS5A01G484700 chr5D 95.281 2797 80 21 897 3686 528148592 528145841 0.000000e+00 4386.0
7 TraesCS5A01G484700 chr5D 96.852 2446 75 1 3808 6253 528145844 528143401 0.000000e+00 4089.0
8 TraesCS5A01G484700 chr5D 86.465 761 62 26 109 831 528149466 528148709 0.000000e+00 797.0
9 TraesCS5A01G484700 chr5D 87.261 628 80 0 5626 6253 527905132 527905759 0.000000e+00 717.0
10 TraesCS5A01G484700 chr5D 88.449 303 31 4 544 845 425984776 425984477 4.610000e-96 363.0
11 TraesCS5A01G484700 chr5D 89.273 289 29 2 550 837 499619420 499619133 1.660000e-95 361.0
12 TraesCS5A01G484700 chr5D 91.613 155 10 3 3664 3817 266853376 266853528 1.770000e-50 211.0
13 TraesCS5A01G484700 chr5D 88.976 127 6 3 3539 3659 361576841 361576965 3.900000e-32 150.0
14 TraesCS5A01G484700 chr5B 96.370 2397 80 4 3808 6204 664951369 664948980 0.000000e+00 3938.0
15 TraesCS5A01G484700 chr5B 96.598 1852 37 10 1819 3667 664953381 664951553 0.000000e+00 3048.0
16 TraesCS5A01G484700 chr5B 91.792 865 47 13 899 1757 664954240 664953394 0.000000e+00 1182.0
17 TraesCS5A01G484700 chr5B 87.639 631 72 3 5626 6253 664682970 664683597 0.000000e+00 728.0
18 TraesCS5A01G484700 chr5B 89.597 298 27 4 551 847 664954672 664954378 5.920000e-100 375.0
19 TraesCS5A01G484700 chr5B 89.931 288 26 3 544 831 657596030 657596314 9.900000e-98 368.0
20 TraesCS5A01G484700 chr5B 88.591 298 32 2 535 831 650165683 650165387 1.660000e-95 361.0
21 TraesCS5A01G484700 chr5B 94.406 143 8 0 3684 3826 345346730 345346872 2.930000e-53 220.0
22 TraesCS5A01G484700 chr5B 94.030 67 4 0 470 536 664954786 664954720 1.110000e-17 102.0
23 TraesCS5A01G484700 chr5B 98.077 52 1 0 238 289 664955312 664955261 2.400000e-14 91.6
24 TraesCS5A01G484700 chr5B 90.164 61 2 4 3520 3579 263519569 263519626 6.720000e-10 76.8
25 TraesCS5A01G484700 chrUn 87.456 574 72 0 5680 6253 263458926 263458353 0.000000e+00 662.0
26 TraesCS5A01G484700 chrUn 96.795 156 5 0 4708 4863 147292299 147292144 1.730000e-65 261.0
27 TraesCS5A01G484700 chrUn 97.386 153 4 0 4708 4860 436597949 436598101 1.730000e-65 261.0
28 TraesCS5A01G484700 chrUn 96.154 156 6 0 4708 4863 147140841 147140686 8.040000e-64 255.0
29 TraesCS5A01G484700 chr3B 91.912 272 20 2 563 833 78291024 78290754 4.570000e-101 379.0
30 TraesCS5A01G484700 chr3B 90.667 75 7 0 3539 3613 144818080 144818006 3.990000e-17 100.0
31 TraesCS5A01G484700 chr7B 97.436 156 4 0 4708 4863 670987400 670987245 3.720000e-67 267.0
32 TraesCS5A01G484700 chr7B 97.436 156 4 0 4708 4863 671242899 671242744 3.720000e-67 267.0
33 TraesCS5A01G484700 chr7B 93.243 148 9 1 3671 3817 713622973 713622826 3.800000e-52 217.0
34 TraesCS5A01G484700 chr7B 93.243 148 9 1 3671 3817 748791509 748791656 3.800000e-52 217.0
35 TraesCS5A01G484700 chr7B 93.197 147 8 2 3681 3827 616616132 616615988 1.370000e-51 215.0
36 TraesCS5A01G484700 chr6B 96.795 156 5 0 4708 4863 62221126 62220971 1.730000e-65 261.0
37 TraesCS5A01G484700 chr6B 96.154 156 6 0 4708 4863 647635746 647635591 8.040000e-64 255.0
38 TraesCS5A01G484700 chr2B 95.775 142 6 0 3678 3819 19866128 19865987 4.880000e-56 230.0
39 TraesCS5A01G484700 chr1B 97.037 135 3 1 3678 3812 623397430 623397563 6.310000e-55 226.0
40 TraesCS5A01G484700 chr1B 95.035 141 5 1 3671 3811 102627865 102627727 2.930000e-53 220.0
41 TraesCS5A01G484700 chr1B 87.500 192 13 8 3226 3414 550282040 550281857 1.770000e-50 211.0
42 TraesCS5A01G484700 chr3D 95.000 140 6 1 3673 3811 67064772 67064911 1.060000e-52 219.0
43 TraesCS5A01G484700 chr3D 95.238 84 2 2 3573 3655 169888220 169888138 1.410000e-26 132.0
44 TraesCS5A01G484700 chr2A 96.721 122 3 1 1 121 203819934 203820055 1.060000e-47 202.0
45 TraesCS5A01G484700 chr2A 84.932 73 7 4 3527 3598 617627305 617627374 3.130000e-08 71.3
46 TraesCS5A01G484700 chr7A 98.246 114 2 0 2 115 117279214 117279101 3.820000e-47 200.0
47 TraesCS5A01G484700 chr7A 94.400 125 5 2 1 124 426772054 426772177 2.300000e-44 191.0
48 TraesCS5A01G484700 chr7A 94.167 120 7 0 3538 3657 704270050 704269931 3.850000e-42 183.0
49 TraesCS5A01G484700 chr4A 94.615 130 5 2 1 128 571782910 571783039 3.820000e-47 200.0
50 TraesCS5A01G484700 chr4A 94.318 88 4 1 3579 3665 724795864 724795777 3.930000e-27 134.0
51 TraesCS5A01G484700 chr3A 97.414 116 3 0 1 116 547196002 547196117 1.370000e-46 198.0
52 TraesCS5A01G484700 chr3A 93.701 127 6 2 1 126 40884645 40884520 8.280000e-44 189.0
53 TraesCS5A01G484700 chr3A 93.701 127 7 1 3 128 343230447 343230573 8.280000e-44 189.0
54 TraesCS5A01G484700 chr6A 93.023 129 7 2 1 128 67409762 67409889 2.980000e-43 187.0
55 TraesCS5A01G484700 chr4D 97.468 79 1 1 3579 3656 402528003 402527925 3.930000e-27 134.0
56 TraesCS5A01G484700 chr4D 93.023 86 3 3 3579 3662 478990756 478990672 8.510000e-24 122.0
57 TraesCS5A01G484700 chr4B 97.468 79 1 1 3579 3656 498374532 498374454 3.930000e-27 134.0
58 TraesCS5A01G484700 chr4B 96.104 77 3 0 3579 3655 517166823 517166899 6.580000e-25 126.0
59 TraesCS5A01G484700 chr4B 91.209 91 3 3 3579 3666 12501384 12501296 1.100000e-22 119.0
60 TraesCS5A01G484700 chr4B 87.500 64 4 4 3519 3579 86142256 86142194 3.130000e-08 71.3
61 TraesCS5A01G484700 chr7D 90.164 61 2 3 3520 3579 270505854 270505911 6.720000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G484700 chr5A 655991498 655997750 6252 True 11548.000000 11548 100.000000 1 6253 1 chr5A.!!$R2 6252
1 TraesCS5A01G484700 chr5A 655461807 655462436 629 False 726.000000 726 87.559000 5624 6253 1 chr5A.!!$F3 629
2 TraesCS5A01G484700 chr5D 528143401 528149466 6065 True 3090.666667 4386 92.866000 109 6253 3 chr5D.!!$R3 6144
3 TraesCS5A01G484700 chr5D 527905132 527905759 627 False 717.000000 717 87.261000 5626 6253 1 chr5D.!!$F3 627
4 TraesCS5A01G484700 chr5B 664948980 664955312 6332 True 1456.100000 3938 94.410667 238 6204 6 chr5B.!!$R2 5966
5 TraesCS5A01G484700 chr5B 664682970 664683597 627 False 728.000000 728 87.639000 5626 6253 1 chr5B.!!$F4 627
6 TraesCS5A01G484700 chrUn 263458353 263458926 573 True 662.000000 662 87.456000 5680 6253 1 chrUn.!!$R3 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
855 1228 0.033504 CTGCTTACGGTGTCCTGTGT 59.966 55.0 0.0 0.0 0.00 3.72 F
856 1229 0.466543 TGCTTACGGTGTCCTGTGTT 59.533 50.0 0.0 0.0 0.00 3.32 F
1808 2274 0.724549 GCGGTCATACAAATGCGTCA 59.275 50.0 0.0 0.0 32.76 4.35 F
3553 4022 0.981183 TTTGCATGTACTCCCTCCGT 59.019 50.0 0.0 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1942 2408 0.914551 CTCGACATACTTTCGTGCCG 59.085 55.000 0.00 0.0 37.73 5.69 R
2123 2589 1.547675 GGAAGAAACCATGTGAGGGCA 60.548 52.381 0.00 0.0 0.00 5.36 R
3682 4332 0.702902 TTCCGGACAGAGGGAGTACT 59.297 55.000 1.83 0.0 33.01 2.73 R
5538 6188 0.039165 GTGGCAGCTAGTTTGCAACC 60.039 55.000 18.75 0.0 43.28 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.175312 ACTTGTCTTAGATTTGTCTAGATACGA 57.825 33.333 0.00 0.00 0.00 3.43
35 36 8.622157 TGTCTTAGATTTGTCTAGATACGAAGG 58.378 37.037 0.00 0.00 0.00 3.46
36 37 8.623030 GTCTTAGATTTGTCTAGATACGAAGGT 58.377 37.037 0.00 0.00 0.00 3.50
37 38 9.842775 TCTTAGATTTGTCTAGATACGAAGGTA 57.157 33.333 0.00 0.00 0.00 3.08
53 54 7.108841 ACGAAGGTATCTAGCACTAAAATGA 57.891 36.000 0.00 0.00 0.00 2.57
54 55 7.203910 ACGAAGGTATCTAGCACTAAAATGAG 58.796 38.462 0.00 0.00 0.00 2.90
55 56 7.147880 ACGAAGGTATCTAGCACTAAAATGAGT 60.148 37.037 0.00 0.00 0.00 3.41
56 57 7.380065 CGAAGGTATCTAGCACTAAAATGAGTC 59.620 40.741 0.00 0.00 0.00 3.36
57 58 7.906199 AGGTATCTAGCACTAAAATGAGTCT 57.094 36.000 0.00 0.00 0.00 3.24
58 59 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
59 60 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
60 61 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
64 65 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
67 68 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
68 69 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
69 70 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
70 71 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
84 85 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
85 86 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
86 87 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
87 88 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
88 89 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
89 90 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
90 91 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
91 92 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
92 93 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
93 94 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
94 95 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
96 97 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
97 98 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
98 99 9.219603 CTAGACAAATCCAAGACAAGTAATTCA 57.780 33.333 0.00 0.00 0.00 2.57
99 100 8.103948 AGACAAATCCAAGACAAGTAATTCAG 57.896 34.615 0.00 0.00 0.00 3.02
100 101 7.939039 AGACAAATCCAAGACAAGTAATTCAGA 59.061 33.333 0.00 0.00 0.00 3.27
101 102 8.463930 ACAAATCCAAGACAAGTAATTCAGAA 57.536 30.769 0.00 0.00 0.00 3.02
102 103 8.352942 ACAAATCCAAGACAAGTAATTCAGAAC 58.647 33.333 0.00 0.00 0.00 3.01
103 104 6.727824 ATCCAAGACAAGTAATTCAGAACG 57.272 37.500 0.00 0.00 0.00 3.95
104 105 4.994852 TCCAAGACAAGTAATTCAGAACGG 59.005 41.667 0.00 0.00 0.00 4.44
105 106 4.994852 CCAAGACAAGTAATTCAGAACGGA 59.005 41.667 0.00 0.00 0.00 4.69
106 107 5.120830 CCAAGACAAGTAATTCAGAACGGAG 59.879 44.000 0.00 0.00 0.00 4.63
107 108 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
115 116 8.757982 AGTAATTCAGAACGGAGGTAGTATAA 57.242 34.615 0.00 0.00 0.00 0.98
118 119 7.834881 ATTCAGAACGGAGGTAGTATAATGA 57.165 36.000 0.00 0.00 0.00 2.57
189 190 5.876612 ATCAGATCAGTTTTGAACAGAGC 57.123 39.130 0.00 0.00 36.78 4.09
220 221 9.903682 GTGATTTGCTAATCTATATTGCAACAT 57.096 29.630 19.31 0.00 40.68 2.71
232 233 2.099141 TGCAACATCTCGAGGAAAGG 57.901 50.000 13.56 0.00 0.00 3.11
233 234 1.347707 TGCAACATCTCGAGGAAAGGT 59.652 47.619 13.56 0.00 0.00 3.50
236 237 0.250513 ACATCTCGAGGAAAGGTGGC 59.749 55.000 13.56 0.00 0.00 5.01
322 323 3.173965 TCCGTCTCTTCTTTCAGGGAAT 58.826 45.455 0.00 0.00 0.00 3.01
361 678 5.636965 GGGTTCGAGTAGTACCTTTTCTTTC 59.363 44.000 3.37 0.00 39.86 2.62
379 696 2.245159 TCCTGAGTGCAGTTTGAGTG 57.755 50.000 0.00 0.00 40.63 3.51
446 784 3.222603 ACAGGGATTTGAGTGAACAACC 58.777 45.455 0.00 0.00 0.00 3.77
454 792 2.441410 TGAGTGAACAACCAGCACAAA 58.559 42.857 0.00 0.00 35.08 2.83
484 824 2.560954 GCTCTCAAAGCCCAAGTCC 58.439 57.895 0.00 0.00 45.92 3.85
519 859 0.698238 AGGCCCAGATACAGCAAACA 59.302 50.000 0.00 0.00 0.00 2.83
539 879 4.643387 AGCCCACTGAACCACGCC 62.643 66.667 0.00 0.00 0.00 5.68
540 880 4.643387 GCCCACTGAACCACGCCT 62.643 66.667 0.00 0.00 0.00 5.52
542 882 2.358737 CCACTGAACCACGCCTCC 60.359 66.667 0.00 0.00 0.00 4.30
543 883 2.738521 CACTGAACCACGCCTCCG 60.739 66.667 0.00 0.00 41.14 4.63
570 943 2.993899 GCTGCGCTCTCAGTTTTTAGTA 59.006 45.455 9.73 0.00 36.49 1.82
583 956 4.081807 AGTTTTTAGTACCACCTCGCCTAG 60.082 45.833 0.00 0.00 0.00 3.02
584 957 1.396653 TTAGTACCACCTCGCCTAGC 58.603 55.000 0.00 0.00 0.00 3.42
639 1012 2.357034 CGCGTGGTGCTACCTTGT 60.357 61.111 0.00 0.00 43.27 3.16
713 1086 1.240641 TTAGTGGCCCACATTGCACG 61.241 55.000 17.80 0.00 36.74 5.34
839 1212 1.250840 AATTTTGGTCCCTCGCCTGC 61.251 55.000 0.00 0.00 0.00 4.85
840 1213 2.142292 ATTTTGGTCCCTCGCCTGCT 62.142 55.000 0.00 0.00 0.00 4.24
841 1214 2.351924 TTTTGGTCCCTCGCCTGCTT 62.352 55.000 0.00 0.00 0.00 3.91
842 1215 1.485294 TTTGGTCCCTCGCCTGCTTA 61.485 55.000 0.00 0.00 0.00 3.09
843 1216 2.180159 TTGGTCCCTCGCCTGCTTAC 62.180 60.000 0.00 0.00 0.00 2.34
844 1217 2.202756 GTCCCTCGCCTGCTTACG 60.203 66.667 0.00 0.00 0.00 3.18
845 1218 3.458163 TCCCTCGCCTGCTTACGG 61.458 66.667 0.00 0.00 0.00 4.02
846 1219 3.771160 CCCTCGCCTGCTTACGGT 61.771 66.667 0.00 0.00 0.00 4.83
847 1220 2.509336 CCTCGCCTGCTTACGGTG 60.509 66.667 0.00 0.00 0.00 4.94
849 1222 1.805945 CTCGCCTGCTTACGGTGTC 60.806 63.158 0.00 0.00 33.79 3.67
852 1225 1.741770 GCCTGCTTACGGTGTCCTG 60.742 63.158 0.00 0.00 0.00 3.86
854 1227 0.670546 CCTGCTTACGGTGTCCTGTG 60.671 60.000 0.00 0.00 0.00 3.66
855 1228 0.033504 CTGCTTACGGTGTCCTGTGT 59.966 55.000 0.00 0.00 0.00 3.72
856 1229 0.466543 TGCTTACGGTGTCCTGTGTT 59.533 50.000 0.00 0.00 0.00 3.32
857 1230 1.134340 TGCTTACGGTGTCCTGTGTTT 60.134 47.619 0.00 0.00 0.00 2.83
858 1231 2.102757 TGCTTACGGTGTCCTGTGTTTA 59.897 45.455 0.00 0.00 0.00 2.01
860 1233 3.749609 GCTTACGGTGTCCTGTGTTTAAT 59.250 43.478 0.00 0.00 0.00 1.40
861 1234 4.214758 GCTTACGGTGTCCTGTGTTTAATT 59.785 41.667 0.00 0.00 0.00 1.40
862 1235 5.278120 GCTTACGGTGTCCTGTGTTTAATTT 60.278 40.000 0.00 0.00 0.00 1.82
863 1236 6.696441 TTACGGTGTCCTGTGTTTAATTTT 57.304 33.333 0.00 0.00 0.00 1.82
869 1270 6.213677 GTGTCCTGTGTTTAATTTTTCCCTC 58.786 40.000 0.00 0.00 0.00 4.30
870 1271 5.894393 TGTCCTGTGTTTAATTTTTCCCTCA 59.106 36.000 0.00 0.00 0.00 3.86
879 1280 3.833559 ATTTTTCCCTCACCTGTCCAT 57.166 42.857 0.00 0.00 0.00 3.41
881 1282 4.733077 TTTTTCCCTCACCTGTCCATTA 57.267 40.909 0.00 0.00 0.00 1.90
883 1284 4.733077 TTTCCCTCACCTGTCCATTAAA 57.267 40.909 0.00 0.00 0.00 1.52
889 1346 5.105756 CCCTCACCTGTCCATTAAAATTCAC 60.106 44.000 0.00 0.00 0.00 3.18
893 1350 6.015519 TCACCTGTCCATTAAAATTCACAAGG 60.016 38.462 0.00 0.00 0.00 3.61
894 1351 5.245977 ACCTGTCCATTAAAATTCACAAGGG 59.754 40.000 0.00 0.00 0.00 3.95
895 1352 5.146010 TGTCCATTAAAATTCACAAGGGC 57.854 39.130 0.00 0.00 0.00 5.19
909 1366 7.630242 TTCACAAGGGCTAAGAAAATATCAG 57.370 36.000 0.00 0.00 0.00 2.90
912 1369 5.358160 ACAAGGGCTAAGAAAATATCAGCAC 59.642 40.000 0.00 0.00 35.86 4.40
915 1373 7.084268 AGGGCTAAGAAAATATCAGCACTAT 57.916 36.000 0.00 0.00 43.96 2.12
986 1444 3.034030 GCTGAACGTGCCAAAGCT 58.966 55.556 0.00 0.00 40.80 3.74
987 1445 2.244000 GCTGAACGTGCCAAAGCTA 58.756 52.632 0.00 0.00 40.80 3.32
1001 1459 2.494870 CAAAGCTAAAGCCTGGAAGCAT 59.505 45.455 0.00 0.00 43.38 3.79
1158 1616 2.125106 GATGCCCTCCACGTGTCC 60.125 66.667 15.65 0.00 0.00 4.02
1294 1752 1.146263 CCCCGCGCCTTCTATTCTT 59.854 57.895 0.00 0.00 0.00 2.52
1456 1917 3.321111 GTCATCCTCCCGTGAGCTTATAA 59.679 47.826 0.00 0.00 37.29 0.98
1460 1921 1.070289 CTCCCGTGAGCTTATAACCCC 59.930 57.143 0.00 0.00 0.00 4.95
1461 1922 1.129058 CCCGTGAGCTTATAACCCCT 58.871 55.000 0.00 0.00 0.00 4.79
1462 1923 1.070289 CCCGTGAGCTTATAACCCCTC 59.930 57.143 0.00 0.00 0.00 4.30
1463 1924 1.269621 CCGTGAGCTTATAACCCCTCG 60.270 57.143 0.00 0.00 0.00 4.63
1464 1925 1.867166 GTGAGCTTATAACCCCTCGC 58.133 55.000 0.00 0.00 0.00 5.03
1511 1972 4.154918 GGGGATAAATGCATTTCTAGCTCG 59.845 45.833 27.28 0.00 0.00 5.03
1537 1998 1.715585 CGTTCCAGATCGCGCAAAT 59.284 52.632 8.75 0.00 0.00 2.32
1540 2001 1.130373 GTTCCAGATCGCGCAAATCAA 59.870 47.619 18.72 5.15 0.00 2.57
1545 2006 1.331756 AGATCGCGCAAATCAACCATC 59.668 47.619 18.72 0.00 0.00 3.51
1626 2088 1.025812 TTGTCCGCCGTGTTGAATTT 58.974 45.000 0.00 0.00 0.00 1.82
1640 2102 1.820519 TGAATTTGGGCTGCAGCTTAG 59.179 47.619 35.82 1.40 41.70 2.18
1655 2117 3.313526 CAGCTTAGCGTGGAATTAGCAAT 59.686 43.478 0.00 0.00 0.00 3.56
1697 2159 7.092716 AGAAATGTGCAACCTGATTTAACATC 58.907 34.615 0.00 0.00 34.36 3.06
1729 2191 6.039616 GCTATGTTATGCTGCCTAGATACTC 58.960 44.000 0.00 0.00 0.00 2.59
1730 2192 4.873746 TGTTATGCTGCCTAGATACTCC 57.126 45.455 0.00 0.00 0.00 3.85
1731 2193 3.255888 TGTTATGCTGCCTAGATACTCCG 59.744 47.826 0.00 0.00 0.00 4.63
1732 2194 2.002505 ATGCTGCCTAGATACTCCGT 57.997 50.000 0.00 0.00 0.00 4.69
1733 2195 2.651382 TGCTGCCTAGATACTCCGTA 57.349 50.000 0.00 0.00 0.00 4.02
1734 2196 2.228059 TGCTGCCTAGATACTCCGTAC 58.772 52.381 0.00 0.00 0.00 3.67
1735 2197 2.158652 TGCTGCCTAGATACTCCGTACT 60.159 50.000 0.00 0.00 0.00 2.73
1773 2239 1.068541 GTTCCAAACCGTGATCCTTGC 60.069 52.381 0.00 0.00 0.00 4.01
1808 2274 0.724549 GCGGTCATACAAATGCGTCA 59.275 50.000 0.00 0.00 32.76 4.35
1817 2283 8.984764 GGTCATACAAATGCGTCATATAGTTAA 58.015 33.333 0.00 0.00 32.76 2.01
1842 2308 7.977818 AGGATATGTTAGATTTGCATACCAGA 58.022 34.615 0.00 0.00 0.00 3.86
1849 2315 4.375272 AGATTTGCATACCAGATCGACTG 58.625 43.478 7.72 7.72 45.36 3.51
1857 2323 1.337260 ACCAGATCGACTGCAGACAAC 60.337 52.381 23.35 8.32 44.52 3.32
1930 2396 9.921637 TTTGGTTTATCAATTGGAAGATACAAC 57.078 29.630 5.42 4.29 0.00 3.32
2080 2546 1.535226 GCGACCATATCTGTGCACGTA 60.535 52.381 13.13 5.63 0.00 3.57
2311 2777 8.294954 TGTTTTTACCATGTAGTCAGGAAAAA 57.705 30.769 0.00 0.00 0.00 1.94
2788 3254 6.043411 AGAAGTGTCTGTTTGTGTTCTCTAC 58.957 40.000 0.00 0.00 30.83 2.59
2887 3353 2.773487 TGTCCTTCACAAATACGTGGG 58.227 47.619 0.00 0.00 37.50 4.61
2979 3445 7.534085 TTTGCCTAAACACACTATATTCTCG 57.466 36.000 0.00 0.00 0.00 4.04
3061 3527 2.648304 TGGATACCTCGTAGGGAGCTAT 59.352 50.000 5.98 0.00 40.58 2.97
3262 3728 4.830573 AAGGGTCCTTCAGCAAGC 57.169 55.556 0.00 0.00 0.00 4.01
3533 4002 7.061326 CCCGGTTAAGTTAAAATTCAAATGTCG 59.939 37.037 0.00 0.00 0.00 4.35
3544 4013 6.689178 AATTCAAATGTCGTTTGCATGTAC 57.311 33.333 11.97 0.00 45.45 2.90
3545 4014 5.431420 TTCAAATGTCGTTTGCATGTACT 57.569 34.783 11.97 0.00 45.45 2.73
3546 4015 5.029650 TCAAATGTCGTTTGCATGTACTC 57.970 39.130 11.97 0.00 45.45 2.59
3547 4016 4.083537 TCAAATGTCGTTTGCATGTACTCC 60.084 41.667 11.97 0.00 45.45 3.85
3548 4017 1.803334 TGTCGTTTGCATGTACTCCC 58.197 50.000 0.00 0.00 0.00 4.30
3549 4018 1.346395 TGTCGTTTGCATGTACTCCCT 59.654 47.619 0.00 0.00 0.00 4.20
3550 4019 2.000447 GTCGTTTGCATGTACTCCCTC 59.000 52.381 0.00 0.00 0.00 4.30
3551 4020 1.066430 TCGTTTGCATGTACTCCCTCC 60.066 52.381 0.00 0.00 0.00 4.30
3552 4021 1.369625 GTTTGCATGTACTCCCTCCG 58.630 55.000 0.00 0.00 0.00 4.63
3553 4022 0.981183 TTTGCATGTACTCCCTCCGT 59.019 50.000 0.00 0.00 0.00 4.69
3554 4023 1.855295 TTGCATGTACTCCCTCCGTA 58.145 50.000 0.00 0.00 0.00 4.02
3555 4024 1.855295 TGCATGTACTCCCTCCGTAA 58.145 50.000 0.00 0.00 0.00 3.18
3556 4025 2.181125 TGCATGTACTCCCTCCGTAAA 58.819 47.619 0.00 0.00 0.00 2.01
3557 4026 2.167693 TGCATGTACTCCCTCCGTAAAG 59.832 50.000 0.00 0.00 0.00 1.85
3558 4027 2.429610 GCATGTACTCCCTCCGTAAAGA 59.570 50.000 0.00 0.00 0.00 2.52
3559 4028 3.118884 GCATGTACTCCCTCCGTAAAGAA 60.119 47.826 0.00 0.00 0.00 2.52
3560 4029 4.622220 GCATGTACTCCCTCCGTAAAGAAA 60.622 45.833 0.00 0.00 0.00 2.52
3561 4030 5.671493 CATGTACTCCCTCCGTAAAGAAAT 58.329 41.667 0.00 0.00 0.00 2.17
3562 4031 6.684613 GCATGTACTCCCTCCGTAAAGAAATA 60.685 42.308 0.00 0.00 0.00 1.40
3563 4032 7.442656 CATGTACTCCCTCCGTAAAGAAATAT 58.557 38.462 0.00 0.00 0.00 1.28
3564 4033 8.582437 CATGTACTCCCTCCGTAAAGAAATATA 58.418 37.037 0.00 0.00 0.00 0.86
3565 4034 8.537728 TGTACTCCCTCCGTAAAGAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
3566 4035 8.636213 TGTACTCCCTCCGTAAAGAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
3567 4036 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3568 4037 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
3569 4038 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
3570 4039 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
3571 4040 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
3572 4041 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
3573 4042 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
3574 4043 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
3575 4044 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
3576 4045 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
3697 4347 9.750783 TTATATTATGTAGTACTCCCTCTGTCC 57.249 37.037 0.00 0.00 0.00 4.02
3698 4348 2.414994 TGTAGTACTCCCTCTGTCCG 57.585 55.000 0.00 0.00 0.00 4.79
3699 4349 1.064906 TGTAGTACTCCCTCTGTCCGG 60.065 57.143 0.00 0.00 0.00 5.14
3700 4350 1.211457 GTAGTACTCCCTCTGTCCGGA 59.789 57.143 0.00 0.00 0.00 5.14
3701 4351 0.702902 AGTACTCCCTCTGTCCGGAA 59.297 55.000 5.23 0.00 0.00 4.30
3702 4352 1.076677 AGTACTCCCTCTGTCCGGAAA 59.923 52.381 5.23 0.00 0.00 3.13
3703 4353 2.108970 GTACTCCCTCTGTCCGGAAAT 58.891 52.381 5.23 0.00 0.00 2.17
3704 4354 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
3705 4355 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
3706 4356 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
3707 4357 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
3708 4358 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
3709 4359 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
3710 4360 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
3711 4361 3.056107 CCTCTGTCCGGAAATACTTGTCA 60.056 47.826 5.23 0.00 0.00 3.58
3712 4362 4.383118 CCTCTGTCCGGAAATACTTGTCAT 60.383 45.833 5.23 0.00 0.00 3.06
3713 4363 4.755411 TCTGTCCGGAAATACTTGTCATC 58.245 43.478 5.23 0.00 0.00 2.92
3714 4364 4.221924 TCTGTCCGGAAATACTTGTCATCA 59.778 41.667 5.23 0.00 0.00 3.07
3715 4365 4.900684 TGTCCGGAAATACTTGTCATCAA 58.099 39.130 5.23 0.00 0.00 2.57
3716 4366 5.309638 TGTCCGGAAATACTTGTCATCAAA 58.690 37.500 5.23 0.00 32.87 2.69
3717 4367 5.765677 TGTCCGGAAATACTTGTCATCAAAA 59.234 36.000 5.23 0.00 32.87 2.44
3718 4368 6.432783 TGTCCGGAAATACTTGTCATCAAAAT 59.567 34.615 5.23 0.00 32.87 1.82
3719 4369 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
3720 4370 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
3721 4371 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
3722 4372 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
3775 4425 8.738645 AGTTCTAGATACATCCATTTTTGTCC 57.261 34.615 0.00 0.00 0.00 4.02
3776 4426 8.328758 AGTTCTAGATACATCCATTTTTGTCCA 58.671 33.333 0.00 0.00 0.00 4.02
3777 4427 9.125026 GTTCTAGATACATCCATTTTTGTCCAT 57.875 33.333 0.00 0.00 0.00 3.41
3778 4428 9.699410 TTCTAGATACATCCATTTTTGTCCATT 57.301 29.630 0.00 0.00 0.00 3.16
3779 4429 9.699410 TCTAGATACATCCATTTTTGTCCATTT 57.301 29.630 0.00 0.00 0.00 2.32
3782 4432 8.814931 AGATACATCCATTTTTGTCCATTTTGA 58.185 29.630 0.00 0.00 0.00 2.69
3783 4433 9.603921 GATACATCCATTTTTGTCCATTTTGAT 57.396 29.630 0.00 0.00 0.00 2.57
3784 4434 7.675962 ACATCCATTTTTGTCCATTTTGATG 57.324 32.000 0.00 0.00 33.80 3.07
3785 4435 7.451732 ACATCCATTTTTGTCCATTTTGATGA 58.548 30.769 0.00 0.00 32.39 2.92
3786 4436 7.388500 ACATCCATTTTTGTCCATTTTGATGAC 59.612 33.333 0.00 0.00 32.39 3.06
3787 4437 6.824553 TCCATTTTTGTCCATTTTGATGACA 58.175 32.000 0.00 0.00 0.00 3.58
3788 4438 7.278135 TCCATTTTTGTCCATTTTGATGACAA 58.722 30.769 0.00 0.00 34.47 3.18
3789 4439 7.441760 TCCATTTTTGTCCATTTTGATGACAAG 59.558 33.333 0.00 0.00 37.13 3.16
3790 4440 7.227116 CCATTTTTGTCCATTTTGATGACAAGT 59.773 33.333 0.00 0.00 37.13 3.16
3791 4441 9.258826 CATTTTTGTCCATTTTGATGACAAGTA 57.741 29.630 0.00 0.00 37.13 2.24
3793 4443 9.829507 TTTTTGTCCATTTTGATGACAAGTATT 57.170 25.926 0.00 0.00 37.13 1.89
3794 4444 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
3795 4445 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
3796 4446 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
3797 4447 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
3798 4448 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
3799 4449 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3800 4450 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3801 4451 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3802 4452 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3803 4453 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3804 4454 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3805 4455 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3806 4456 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3858 4508 8.496707 AATCCATATTGAAAAATTTCCAGCAC 57.503 30.769 3.60 0.00 36.36 4.40
4010 4660 2.623416 GCAGGTACCTCAGTTTTGCTTT 59.377 45.455 12.84 0.00 0.00 3.51
4084 4734 8.133627 GTCAATACATCTTTTCATATTGCTGCT 58.866 33.333 0.00 0.00 35.76 4.24
4169 4819 4.620184 GCTGCAAAAGTGTCAATTCTGATC 59.380 41.667 0.00 0.00 33.05 2.92
4190 4840 2.285977 GGGCTGTTCAAGGTAATACCG 58.714 52.381 3.47 0.00 44.90 4.02
4226 4876 1.482593 ACTGTACTCTGCTGGGCATAC 59.517 52.381 0.00 0.00 38.13 2.39
4239 4889 4.511826 GCTGGGCATACAGTGTAATAGTTC 59.488 45.833 7.16 0.00 40.59 3.01
4430 5080 6.119536 TCGCCACCTATTTGAATTGATAGTT 58.880 36.000 0.00 0.00 0.00 2.24
4557 5207 8.680903 AGTAATTTTCATCAGGCATCTAAACAG 58.319 33.333 0.00 0.00 0.00 3.16
4558 5208 4.970662 TTTCATCAGGCATCTAAACAGC 57.029 40.909 0.00 0.00 0.00 4.40
4823 5473 2.098614 TGCCTTGTGTTTCAGCTTTCA 58.901 42.857 0.00 0.00 0.00 2.69
4935 5585 2.874701 GGATCAAATGCGCTAGTGACAT 59.125 45.455 9.73 7.39 0.00 3.06
5091 5741 0.318762 GGCGCCAACCAATTTAACCA 59.681 50.000 24.80 0.00 0.00 3.67
5303 5953 1.984570 CTCTTCCCTGTCCGCTCCA 60.985 63.158 0.00 0.00 0.00 3.86
5321 5971 3.661131 CGGATCGGATCGGAGCGT 61.661 66.667 17.77 0.00 0.00 5.07
5358 6008 0.460459 GCGTCTCCCTGTAAAGCTCC 60.460 60.000 0.00 0.00 0.00 4.70
5419 6069 4.041740 TGCATCGATCTGTAGTTGTACC 57.958 45.455 0.00 0.00 0.00 3.34
5534 6184 7.224753 GTGTATGTGTGTGTATCTATGGGAAAG 59.775 40.741 0.00 0.00 0.00 2.62
5536 6186 3.877508 GTGTGTGTATCTATGGGAAAGCC 59.122 47.826 0.00 0.00 0.00 4.35
5562 6212 1.403249 GCAAACTAGCTGCCACATTGG 60.403 52.381 0.00 0.00 41.55 3.16
5564 6214 2.557924 CAAACTAGCTGCCACATTGGAA 59.442 45.455 0.00 0.00 40.96 3.53
5662 6312 2.646719 CCTGACGTCGACGGGAAA 59.353 61.111 37.89 20.51 44.95 3.13
5670 6320 0.597072 GTCGACGGGAAAGACACTCT 59.403 55.000 0.00 0.00 35.19 3.24
5737 6387 1.261938 TTCCAAGATCCTCCGGCGAA 61.262 55.000 9.30 0.00 0.00 4.70
5790 6440 2.353958 CACCACCTGCCTCATGCT 59.646 61.111 0.00 0.00 42.00 3.79
5796 6446 4.172512 CTGCCTCATGCTCGGCCT 62.173 66.667 15.05 0.00 45.71 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.175312 TCGTATCTAGACAAATCTAAGACAAGT 57.825 33.333 0.00 0.00 36.98 3.16
9 10 8.622157 CCTTCGTATCTAGACAAATCTAAGACA 58.378 37.037 0.00 0.00 36.98 3.41
10 11 8.623030 ACCTTCGTATCTAGACAAATCTAAGAC 58.377 37.037 0.00 0.00 36.98 3.01
11 12 8.749026 ACCTTCGTATCTAGACAAATCTAAGA 57.251 34.615 0.00 0.00 36.98 2.10
27 28 8.857098 TCATTTTAGTGCTAGATACCTTCGTAT 58.143 33.333 0.00 0.00 37.92 3.06
28 29 8.229253 TCATTTTAGTGCTAGATACCTTCGTA 57.771 34.615 0.00 0.00 0.00 3.43
29 30 7.108841 TCATTTTAGTGCTAGATACCTTCGT 57.891 36.000 0.00 0.00 0.00 3.85
30 31 7.203910 ACTCATTTTAGTGCTAGATACCTTCG 58.796 38.462 0.00 0.00 0.00 3.79
31 32 8.417884 AGACTCATTTTAGTGCTAGATACCTTC 58.582 37.037 0.00 0.00 0.00 3.46
32 33 8.312669 AGACTCATTTTAGTGCTAGATACCTT 57.687 34.615 0.00 0.00 0.00 3.50
33 34 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
34 35 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
38 39 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
41 42 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
42 43 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
43 44 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
44 45 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
60 61 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
61 62 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
62 63 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
63 64 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
64 65 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
65 66 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
66 67 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
67 68 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
68 69 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
70 71 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
71 72 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
72 73 9.219603 TGAATTACTTGTCTTGGATTTGTCTAG 57.780 33.333 0.00 0.00 0.00 2.43
73 74 9.219603 CTGAATTACTTGTCTTGGATTTGTCTA 57.780 33.333 0.00 0.00 0.00 2.59
74 75 7.939039 TCTGAATTACTTGTCTTGGATTTGTCT 59.061 33.333 0.00 0.00 0.00 3.41
75 76 8.099364 TCTGAATTACTTGTCTTGGATTTGTC 57.901 34.615 0.00 0.00 0.00 3.18
76 77 8.352942 GTTCTGAATTACTTGTCTTGGATTTGT 58.647 33.333 0.00 0.00 0.00 2.83
77 78 7.535258 CGTTCTGAATTACTTGTCTTGGATTTG 59.465 37.037 0.00 0.00 0.00 2.32
78 79 7.308589 CCGTTCTGAATTACTTGTCTTGGATTT 60.309 37.037 0.00 0.00 0.00 2.17
79 80 6.149474 CCGTTCTGAATTACTTGTCTTGGATT 59.851 38.462 0.00 0.00 0.00 3.01
80 81 5.643777 CCGTTCTGAATTACTTGTCTTGGAT 59.356 40.000 0.00 0.00 0.00 3.41
81 82 4.994852 CCGTTCTGAATTACTTGTCTTGGA 59.005 41.667 0.00 0.00 0.00 3.53
82 83 4.994852 TCCGTTCTGAATTACTTGTCTTGG 59.005 41.667 0.00 0.00 0.00 3.61
83 84 5.120830 CCTCCGTTCTGAATTACTTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
84 85 5.221661 ACCTCCGTTCTGAATTACTTGTCTT 60.222 40.000 0.00 0.00 0.00 3.01
85 86 4.283722 ACCTCCGTTCTGAATTACTTGTCT 59.716 41.667 0.00 0.00 0.00 3.41
86 87 4.566987 ACCTCCGTTCTGAATTACTTGTC 58.433 43.478 0.00 0.00 0.00 3.18
87 88 4.618920 ACCTCCGTTCTGAATTACTTGT 57.381 40.909 0.00 0.00 0.00 3.16
88 89 5.721232 ACTACCTCCGTTCTGAATTACTTG 58.279 41.667 0.00 0.00 0.00 3.16
89 90 5.997384 ACTACCTCCGTTCTGAATTACTT 57.003 39.130 0.00 0.00 0.00 2.24
90 91 8.757982 TTATACTACCTCCGTTCTGAATTACT 57.242 34.615 0.00 0.00 0.00 2.24
91 92 9.408069 CATTATACTACCTCCGTTCTGAATTAC 57.592 37.037 0.00 0.00 0.00 1.89
92 93 9.358406 TCATTATACTACCTCCGTTCTGAATTA 57.642 33.333 0.00 0.00 0.00 1.40
93 94 8.246430 TCATTATACTACCTCCGTTCTGAATT 57.754 34.615 0.00 0.00 0.00 2.17
94 95 7.834881 TCATTATACTACCTCCGTTCTGAAT 57.165 36.000 0.00 0.00 0.00 2.57
95 96 7.558807 TCTTCATTATACTACCTCCGTTCTGAA 59.441 37.037 0.00 0.00 0.00 3.02
96 97 7.058525 TCTTCATTATACTACCTCCGTTCTGA 58.941 38.462 0.00 0.00 0.00 3.27
97 98 7.273320 TCTTCATTATACTACCTCCGTTCTG 57.727 40.000 0.00 0.00 0.00 3.02
98 99 7.893124 TTCTTCATTATACTACCTCCGTTCT 57.107 36.000 0.00 0.00 0.00 3.01
99 100 7.977853 TGTTTCTTCATTATACTACCTCCGTTC 59.022 37.037 0.00 0.00 0.00 3.95
100 101 7.844009 TGTTTCTTCATTATACTACCTCCGTT 58.156 34.615 0.00 0.00 0.00 4.44
101 102 7.414222 TGTTTCTTCATTATACTACCTCCGT 57.586 36.000 0.00 0.00 0.00 4.69
102 103 9.976511 TTATGTTTCTTCATTATACTACCTCCG 57.023 33.333 0.00 0.00 0.00 4.63
154 155 8.859236 AAACTGATCTGATTCTTCTCATTCAA 57.141 30.769 6.60 0.00 0.00 2.69
189 190 9.823098 GCAATATAGATTAGCAAATCACTCTTG 57.177 33.333 1.35 1.80 43.44 3.02
220 221 0.537188 GATGCCACCTTTCCTCGAGA 59.463 55.000 15.71 0.00 0.00 4.04
223 224 0.322456 TTGGATGCCACCTTTCCTCG 60.322 55.000 0.00 0.00 30.78 4.63
232 233 5.068636 AGAGTATCATGAATTGGATGCCAC 58.931 41.667 0.00 0.00 37.82 5.01
233 234 5.314718 AGAGTATCATGAATTGGATGCCA 57.685 39.130 0.00 0.00 37.82 4.92
236 237 7.812690 TTGGAAGAGTATCATGAATTGGATG 57.187 36.000 0.00 0.00 37.82 3.51
289 290 1.344438 AGAGACGGAATCACAGCAACA 59.656 47.619 0.00 0.00 0.00 3.33
296 297 3.929610 CCTGAAAGAAGAGACGGAATCAC 59.070 47.826 0.00 0.00 34.07 3.06
322 323 3.070159 TCGAACCCATGGCAAAATTTTCA 59.930 39.130 6.09 0.00 0.00 2.69
361 678 1.233019 CCACTCAAACTGCACTCAGG 58.767 55.000 0.00 0.00 44.54 3.86
420 757 3.319137 TCACTCAAATCCCTGTTCTCG 57.681 47.619 0.00 0.00 0.00 4.04
422 759 4.437682 TGTTCACTCAAATCCCTGTTCT 57.562 40.909 0.00 0.00 0.00 3.01
423 760 4.261614 GGTTGTTCACTCAAATCCCTGTTC 60.262 45.833 0.00 0.00 0.00 3.18
426 763 3.221771 TGGTTGTTCACTCAAATCCCTG 58.778 45.455 0.00 0.00 0.00 4.45
430 768 3.066621 TGTGCTGGTTGTTCACTCAAATC 59.933 43.478 0.00 0.00 0.00 2.17
454 792 1.536073 TTGAGAGCCGTACAGCAGCT 61.536 55.000 3.48 0.00 40.24 4.24
458 796 2.082354 GCTTTGAGAGCCGTACAGC 58.918 57.895 0.00 0.00 46.01 4.40
484 824 1.576356 GCCTCAGCAAAGGATAGACG 58.424 55.000 8.49 0.00 38.87 4.18
519 859 2.515901 GTGGTTCAGTGGGCTGGT 59.484 61.111 0.00 0.00 42.78 4.00
555 928 5.162075 CGAGGTGGTACTAAAAACTGAGAG 58.838 45.833 0.00 0.00 0.00 3.20
560 933 2.636403 AGGCGAGGTGGTACTAAAAACT 59.364 45.455 0.00 0.00 0.00 2.66
604 977 3.172050 CGCGCTCATTATATAACGAGCT 58.828 45.455 30.23 1.47 46.88 4.09
610 983 2.734606 GCACCACGCGCTCATTATATAA 59.265 45.455 5.73 0.00 0.00 0.98
623 996 1.574702 GGAACAAGGTAGCACCACGC 61.575 60.000 7.86 0.00 41.95 5.34
625 998 3.717842 TGGAACAAGGTAGCACCAC 57.282 52.632 7.86 0.00 41.95 4.16
632 1005 5.188359 GTCCAGGTAAGTATGGAACAAGGTA 59.812 44.000 0.00 0.00 46.87 3.08
633 1006 4.019591 GTCCAGGTAAGTATGGAACAAGGT 60.020 45.833 0.00 0.00 46.87 3.50
639 1012 2.112998 CCCGTCCAGGTAAGTATGGAA 58.887 52.381 0.00 0.00 46.87 3.53
812 1185 6.211785 AGGCGAGGGACCAAAATTTAATTTTA 59.788 34.615 14.28 0.00 40.27 1.52
833 1206 2.813908 GGACACCGTAAGCAGGCG 60.814 66.667 0.00 0.00 0.00 5.52
839 1212 5.934935 AATTAAACACAGGACACCGTAAG 57.065 39.130 0.00 0.00 0.00 2.34
840 1213 6.696441 AAAATTAAACACAGGACACCGTAA 57.304 33.333 0.00 0.00 0.00 3.18
841 1214 6.238703 GGAAAAATTAAACACAGGACACCGTA 60.239 38.462 0.00 0.00 0.00 4.02
842 1215 5.450826 GGAAAAATTAAACACAGGACACCGT 60.451 40.000 0.00 0.00 0.00 4.83
843 1216 4.979815 GGAAAAATTAAACACAGGACACCG 59.020 41.667 0.00 0.00 0.00 4.94
844 1217 5.069914 AGGGAAAAATTAAACACAGGACACC 59.930 40.000 0.00 0.00 0.00 4.16
845 1218 6.156748 AGGGAAAAATTAAACACAGGACAC 57.843 37.500 0.00 0.00 0.00 3.67
846 1219 5.894393 TGAGGGAAAAATTAAACACAGGACA 59.106 36.000 0.00 0.00 0.00 4.02
847 1220 6.213677 GTGAGGGAAAAATTAAACACAGGAC 58.786 40.000 0.00 0.00 0.00 3.85
849 1222 5.304357 AGGTGAGGGAAAAATTAAACACAGG 59.696 40.000 0.00 0.00 0.00 4.00
852 1225 6.156748 ACAGGTGAGGGAAAAATTAAACAC 57.843 37.500 0.00 0.00 0.00 3.32
854 1227 5.303333 TGGACAGGTGAGGGAAAAATTAAAC 59.697 40.000 0.00 0.00 0.00 2.01
855 1228 5.459505 TGGACAGGTGAGGGAAAAATTAAA 58.540 37.500 0.00 0.00 0.00 1.52
856 1229 5.068215 TGGACAGGTGAGGGAAAAATTAA 57.932 39.130 0.00 0.00 0.00 1.40
857 1230 4.733077 TGGACAGGTGAGGGAAAAATTA 57.267 40.909 0.00 0.00 0.00 1.40
858 1231 3.611025 TGGACAGGTGAGGGAAAAATT 57.389 42.857 0.00 0.00 0.00 1.82
860 1233 3.611025 AATGGACAGGTGAGGGAAAAA 57.389 42.857 0.00 0.00 0.00 1.94
861 1234 4.733077 TTAATGGACAGGTGAGGGAAAA 57.267 40.909 0.00 0.00 0.00 2.29
862 1235 4.733077 TTTAATGGACAGGTGAGGGAAA 57.267 40.909 0.00 0.00 0.00 3.13
863 1236 4.733077 TTTTAATGGACAGGTGAGGGAA 57.267 40.909 0.00 0.00 0.00 3.97
869 1270 6.158598 CCTTGTGAATTTTAATGGACAGGTG 58.841 40.000 0.00 0.00 0.00 4.00
870 1271 5.245977 CCCTTGTGAATTTTAATGGACAGGT 59.754 40.000 0.00 0.00 0.00 4.00
881 1282 9.875691 GATATTTTCTTAGCCCTTGTGAATTTT 57.124 29.630 0.00 0.00 0.00 1.82
883 1284 8.593945 TGATATTTTCTTAGCCCTTGTGAATT 57.406 30.769 0.00 0.00 0.00 2.17
889 1346 5.591877 AGTGCTGATATTTTCTTAGCCCTTG 59.408 40.000 0.00 0.00 33.60 3.61
893 1350 8.159344 ACAATAGTGCTGATATTTTCTTAGCC 57.841 34.615 0.00 0.00 33.60 3.93
951 1409 6.695713 CGTTCAGCCTAGCGCATATATTATAA 59.304 38.462 11.47 0.00 41.38 0.98
956 1414 2.231478 ACGTTCAGCCTAGCGCATATAT 59.769 45.455 11.47 0.00 41.38 0.86
957 1415 1.611977 ACGTTCAGCCTAGCGCATATA 59.388 47.619 11.47 0.00 41.38 0.86
972 1430 1.666023 GGCTTTAGCTTTGGCACGTTC 60.666 52.381 0.00 0.00 41.70 3.95
983 1441 1.684248 CCATGCTTCCAGGCTTTAGCT 60.684 52.381 11.96 0.00 41.70 3.32
984 1442 0.743097 CCATGCTTCCAGGCTTTAGC 59.257 55.000 5.55 5.55 41.14 3.09
985 1443 0.743097 GCCATGCTTCCAGGCTTTAG 59.257 55.000 0.00 0.00 44.92 1.85
986 1444 2.886382 GCCATGCTTCCAGGCTTTA 58.114 52.632 0.00 0.00 44.92 1.85
987 1445 3.704151 GCCATGCTTCCAGGCTTT 58.296 55.556 0.00 0.00 44.92 3.51
1001 1459 4.758251 CACTCGTCGCCATGGCCA 62.758 66.667 30.79 16.91 37.98 5.36
1143 1601 3.311110 GAGGACACGTGGAGGGCA 61.311 66.667 21.57 0.00 0.00 5.36
1537 1998 2.092968 CGATTCTTCCCCAGATGGTTGA 60.093 50.000 0.00 0.00 0.00 3.18
1540 2001 1.879575 TCGATTCTTCCCCAGATGGT 58.120 50.000 0.00 0.00 0.00 3.55
1545 2006 2.766828 AGTAGGTTCGATTCTTCCCCAG 59.233 50.000 0.00 0.00 0.00 4.45
1602 2064 2.542907 AACACGGCGGACAAAGCAG 61.543 57.895 13.24 0.00 36.08 4.24
1626 2088 4.020617 ACGCTAAGCTGCAGCCCA 62.021 61.111 34.39 21.21 43.38 5.36
1640 2102 3.698029 ACATCATTGCTAATTCCACGC 57.302 42.857 0.00 0.00 0.00 5.34
1655 2117 6.147656 CACATTTCTTACAGTGCACTACATCA 59.852 38.462 21.20 0.52 0.00 3.07
1667 2129 5.633830 ATCAGGTTGCACATTTCTTACAG 57.366 39.130 0.00 0.00 0.00 2.74
1697 2159 4.143030 GGCAGCATAACATAGCATAAGACG 60.143 45.833 0.00 0.00 0.00 4.18
1729 2191 4.985538 AATTCCTGACAGTCTAGTACGG 57.014 45.455 1.31 0.00 0.00 4.02
1730 2192 6.157211 ACAAAATTCCTGACAGTCTAGTACG 58.843 40.000 1.31 0.00 0.00 3.67
1731 2193 7.117956 GGAACAAAATTCCTGACAGTCTAGTAC 59.882 40.741 1.31 0.00 35.73 2.73
1732 2194 7.159372 GGAACAAAATTCCTGACAGTCTAGTA 58.841 38.462 1.31 0.00 35.73 1.82
1733 2195 5.998363 GGAACAAAATTCCTGACAGTCTAGT 59.002 40.000 1.31 0.00 35.73 2.57
1734 2196 5.997746 TGGAACAAAATTCCTGACAGTCTAG 59.002 40.000 1.31 0.00 39.31 2.43
1735 2197 5.935945 TGGAACAAAATTCCTGACAGTCTA 58.064 37.500 1.31 0.00 39.31 2.59
1790 2256 4.990543 ATATGACGCATTTGTATGACCG 57.009 40.909 0.00 0.00 33.37 4.79
1817 2283 7.977818 TCTGGTATGCAAATCTAACATATCCT 58.022 34.615 0.00 0.00 0.00 3.24
1840 2306 1.615883 ACAGTTGTCTGCAGTCGATCT 59.384 47.619 14.67 5.67 44.77 2.75
1842 2308 2.138320 CAACAGTTGTCTGCAGTCGAT 58.862 47.619 14.67 0.00 44.77 3.59
1849 2315 1.068748 CCAGATGCAACAGTTGTCTGC 60.069 52.381 21.01 7.92 44.77 4.26
1857 2323 1.270550 GACCAAACCCAGATGCAACAG 59.729 52.381 0.00 0.00 0.00 3.16
1930 2396 3.861276 TTCGTGCCGACCCTATATATG 57.139 47.619 0.00 0.00 34.89 1.78
1942 2408 0.914551 CTCGACATACTTTCGTGCCG 59.085 55.000 0.00 0.00 37.73 5.69
1964 2430 9.906660 CAAACATTGGCTCATTAGTACTAAAAA 57.093 29.630 18.88 9.31 0.00 1.94
2080 2546 4.901250 AGTGGAACAATCAAATTGGGACTT 59.099 37.500 4.82 0.00 44.16 3.01
2123 2589 1.547675 GGAAGAAACCATGTGAGGGCA 60.548 52.381 0.00 0.00 0.00 5.36
2311 2777 8.090214 ACAATAAAGCTCATTAAAGCACAACAT 58.910 29.630 2.15 0.00 45.00 2.71
2751 3217 5.046014 ACAGACACTTCTATCCATTCAAGCT 60.046 40.000 0.00 0.00 0.00 3.74
2887 3353 8.443953 ACAGCTCCTTAAAAGATATCAATGTC 57.556 34.615 5.32 0.00 0.00 3.06
3061 3527 5.359756 CATCCTCCTACAACATCGATTTCA 58.640 41.667 0.00 0.00 0.00 2.69
3200 3666 4.112634 GCCTTCTTTTTGTTGTCTTCCAC 58.887 43.478 0.00 0.00 0.00 4.02
3262 3728 4.058124 TCTCATCTGTCAAAACCTTGTCG 58.942 43.478 0.00 0.00 33.94 4.35
3533 4002 1.338769 ACGGAGGGAGTACATGCAAAC 60.339 52.381 0.00 0.00 0.00 2.93
3544 4013 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
3545 4014 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
3546 4015 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
3547 4016 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
3548 4017 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
3549 4018 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
3550 4019 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
3555 4024 9.699703 GGAGATCTAAACGCTCTTATATTTCTT 57.300 33.333 0.00 0.00 0.00 2.52
3556 4025 8.308207 GGGAGATCTAAACGCTCTTATATTTCT 58.692 37.037 0.00 0.00 0.00 2.52
3557 4026 8.308207 AGGGAGATCTAAACGCTCTTATATTTC 58.692 37.037 0.00 0.00 0.00 2.17
3558 4027 8.196378 AGGGAGATCTAAACGCTCTTATATTT 57.804 34.615 0.00 0.00 0.00 1.40
3559 4028 7.672239 AGAGGGAGATCTAAACGCTCTTATATT 59.328 37.037 18.40 2.54 46.41 1.28
3560 4029 7.122055 CAGAGGGAGATCTAAACGCTCTTATAT 59.878 40.741 20.43 4.21 46.41 0.86
3561 4030 6.431543 CAGAGGGAGATCTAAACGCTCTTATA 59.568 42.308 20.43 0.00 46.41 0.98
3562 4031 5.242838 CAGAGGGAGATCTAAACGCTCTTAT 59.757 44.000 20.43 4.77 46.41 1.73
3563 4032 4.580995 CAGAGGGAGATCTAAACGCTCTTA 59.419 45.833 20.43 0.00 46.41 2.10
3564 4033 3.383185 CAGAGGGAGATCTAAACGCTCTT 59.617 47.826 20.43 8.82 46.41 2.85
3565 4034 3.306472 AGAGGGAGATCTAAACGCTCT 57.694 47.619 18.40 18.40 44.75 4.09
3566 4035 2.691011 ACAGAGGGAGATCTAAACGCTC 59.309 50.000 15.32 15.32 41.61 5.03
3567 4036 2.741145 ACAGAGGGAGATCTAAACGCT 58.259 47.619 0.00 0.00 0.00 5.07
3568 4037 4.650754 TTACAGAGGGAGATCTAAACGC 57.349 45.455 0.00 0.00 0.00 4.84
3569 4038 6.452494 TCTTTACAGAGGGAGATCTAAACG 57.548 41.667 0.00 0.00 0.00 3.60
3577 4046 8.643324 GCTCTTATATTTCTTTACAGAGGGAGA 58.357 37.037 0.00 0.00 0.00 3.71
3680 4330 1.211457 TCCGGACAGAGGGAGTACTAC 59.789 57.143 0.00 0.00 0.00 2.73
3681 4331 1.588239 TCCGGACAGAGGGAGTACTA 58.412 55.000 0.00 0.00 0.00 1.82
3682 4332 0.702902 TTCCGGACAGAGGGAGTACT 59.297 55.000 1.83 0.00 33.01 2.73
3683 4333 1.553706 TTTCCGGACAGAGGGAGTAC 58.446 55.000 1.83 0.00 33.01 2.73
3684 4334 2.544844 ATTTCCGGACAGAGGGAGTA 57.455 50.000 1.83 0.00 33.01 2.59
3685 4335 2.108970 GTATTTCCGGACAGAGGGAGT 58.891 52.381 1.83 0.00 33.01 3.85
3686 4336 2.389715 AGTATTTCCGGACAGAGGGAG 58.610 52.381 1.83 0.00 33.01 4.30
3687 4337 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
3688 4338 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
3689 4339 3.056107 TGACAAGTATTTCCGGACAGAGG 60.056 47.826 1.83 0.00 0.00 3.69
3690 4340 4.188247 TGACAAGTATTTCCGGACAGAG 57.812 45.455 1.83 0.00 0.00 3.35
3691 4341 4.221924 TGATGACAAGTATTTCCGGACAGA 59.778 41.667 1.83 0.00 0.00 3.41
3692 4342 4.503910 TGATGACAAGTATTTCCGGACAG 58.496 43.478 1.83 0.00 0.00 3.51
3693 4343 4.545208 TGATGACAAGTATTTCCGGACA 57.455 40.909 1.83 0.00 0.00 4.02
3694 4344 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
3695 4345 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
3696 4346 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
3697 4347 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
3749 4399 9.832445 GGACAAAAATGGATGTATCTAGAACTA 57.168 33.333 0.00 0.00 0.00 2.24
3750 4400 8.328758 TGGACAAAAATGGATGTATCTAGAACT 58.671 33.333 0.00 0.00 0.00 3.01
3751 4401 8.506168 TGGACAAAAATGGATGTATCTAGAAC 57.494 34.615 0.00 0.00 0.00 3.01
3752 4402 9.699410 AATGGACAAAAATGGATGTATCTAGAA 57.301 29.630 0.00 0.00 0.00 2.10
3753 4403 9.699410 AAATGGACAAAAATGGATGTATCTAGA 57.301 29.630 0.00 0.00 0.00 2.43
3756 4406 8.814931 TCAAAATGGACAAAAATGGATGTATCT 58.185 29.630 0.00 0.00 0.00 1.98
3757 4407 9.603921 ATCAAAATGGACAAAAATGGATGTATC 57.396 29.630 0.00 0.00 0.00 2.24
3758 4408 9.386010 CATCAAAATGGACAAAAATGGATGTAT 57.614 29.630 0.00 0.00 0.00 2.29
3759 4409 8.591940 TCATCAAAATGGACAAAAATGGATGTA 58.408 29.630 0.00 0.00 33.42 2.29
3760 4410 7.388500 GTCATCAAAATGGACAAAAATGGATGT 59.612 33.333 0.00 0.00 33.42 3.06
3761 4411 7.388224 TGTCATCAAAATGGACAAAAATGGATG 59.612 33.333 0.00 0.00 33.42 3.51
3762 4412 7.451732 TGTCATCAAAATGGACAAAAATGGAT 58.548 30.769 0.00 0.00 33.42 3.41
3763 4413 6.824553 TGTCATCAAAATGGACAAAAATGGA 58.175 32.000 0.00 0.00 33.42 3.41
3764 4414 7.227116 ACTTGTCATCAAAATGGACAAAAATGG 59.773 33.333 7.70 0.00 34.98 3.16
3765 4415 8.145316 ACTTGTCATCAAAATGGACAAAAATG 57.855 30.769 7.70 0.11 34.98 2.32
3767 4417 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
3768 4418 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
3769 4419 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
3770 4420 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
3771 4421 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
3772 4422 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
3773 4423 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3774 4424 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3775 4425 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3776 4426 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3777 4427 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3778 4428 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3779 4429 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3780 4430 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3781 4431 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3782 4432 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3783 4433 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3784 4434 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3785 4435 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3786 4436 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3787 4437 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3788 4438 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3789 4439 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3790 4440 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3791 4441 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
3792 4442 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
3793 4443 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
3794 4444 2.734755 TAATACTCCCTCCGTCCGAA 57.265 50.000 0.00 0.00 0.00 4.30
3795 4445 2.965671 ATAATACTCCCTCCGTCCGA 57.034 50.000 0.00 0.00 0.00 4.55
3796 4446 4.332428 AAAATAATACTCCCTCCGTCCG 57.668 45.455 0.00 0.00 0.00 4.79
3797 4447 4.820173 CCAAAAATAATACTCCCTCCGTCC 59.180 45.833 0.00 0.00 0.00 4.79
3798 4448 4.275196 GCCAAAAATAATACTCCCTCCGTC 59.725 45.833 0.00 0.00 0.00 4.79
3799 4449 4.079958 AGCCAAAAATAATACTCCCTCCGT 60.080 41.667 0.00 0.00 0.00 4.69
3800 4450 4.461198 AGCCAAAAATAATACTCCCTCCG 58.539 43.478 0.00 0.00 0.00 4.63
3801 4451 5.069119 CCAAGCCAAAAATAATACTCCCTCC 59.931 44.000 0.00 0.00 0.00 4.30
3802 4452 5.069119 CCCAAGCCAAAAATAATACTCCCTC 59.931 44.000 0.00 0.00 0.00 4.30
3803 4453 4.962362 CCCAAGCCAAAAATAATACTCCCT 59.038 41.667 0.00 0.00 0.00 4.20
3804 4454 4.959839 TCCCAAGCCAAAAATAATACTCCC 59.040 41.667 0.00 0.00 0.00 4.30
3805 4455 6.154534 ACTTCCCAAGCCAAAAATAATACTCC 59.845 38.462 0.00 0.00 0.00 3.85
3806 4456 7.170393 ACTTCCCAAGCCAAAAATAATACTC 57.830 36.000 0.00 0.00 0.00 2.59
3906 4556 6.234177 AGTTTAGCACTTTAGCTGACTTGAT 58.766 36.000 0.00 0.00 46.11 2.57
4010 4660 2.571212 ACGAACCAATTGAACAGCTCA 58.429 42.857 7.12 0.00 0.00 4.26
4169 4819 2.285977 GGTATTACCTTGAACAGCCCG 58.714 52.381 5.56 0.00 34.73 6.13
4190 4840 1.950909 ACAGTAGTGATCTAGCTCCGC 59.049 52.381 4.09 0.00 0.00 5.54
4226 4876 9.121517 CTGCAAAAAGATTGAACTATTACACTG 57.878 33.333 0.00 0.00 0.00 3.66
4239 4889 6.256104 TGTCATCACAAACTGCAAAAAGATTG 59.744 34.615 0.00 0.00 36.37 2.67
4383 5033 0.321653 ATGAGGGTCACACTTTCGGC 60.322 55.000 0.00 0.00 0.00 5.54
4385 5035 2.076863 GGAATGAGGGTCACACTTTCG 58.923 52.381 0.00 0.00 0.00 3.46
4430 5080 1.285280 ATGCCTAGTTGCCTGGTACA 58.715 50.000 0.00 0.00 0.00 2.90
4781 5431 5.350365 GCATGTTAATTTCTCGTACCACTCA 59.650 40.000 0.00 0.00 0.00 3.41
4823 5473 1.212935 AGCCAGCTTATCGGACCAAAT 59.787 47.619 0.00 0.00 0.00 2.32
4935 5585 2.398554 GCAAGGGCGAGAATGCGAA 61.399 57.895 0.00 0.00 35.06 4.70
5091 5741 6.769822 CCCTGTAGACATGAAGAAAGCAATAT 59.230 38.462 0.00 0.00 0.00 1.28
5168 5818 1.425066 AGGATGACAAACAAGAGGGCA 59.575 47.619 0.00 0.00 0.00 5.36
5303 5953 3.661131 CGCTCCGATCCGATCCGT 61.661 66.667 2.69 0.00 0.00 4.69
5358 6008 0.962356 ACAGGCAAAATCGGCAGGAG 60.962 55.000 0.00 0.00 0.00 3.69
5443 6093 3.079578 CAGCTGATTCAGAAAAGAGGCA 58.920 45.455 17.87 0.00 32.44 4.75
5534 6184 1.971695 AGCTAGTTTGCAACCGGGC 60.972 57.895 6.32 0.00 34.99 6.13
5536 6186 1.210155 GCAGCTAGTTTGCAACCGG 59.790 57.895 14.12 0.00 41.17 5.28
5538 6188 0.039165 GTGGCAGCTAGTTTGCAACC 60.039 55.000 18.75 0.00 43.28 3.77
5553 6203 4.301628 CTGAAAGTTCTTTCCAATGTGGC 58.698 43.478 18.60 0.00 37.47 5.01
5562 6212 5.059833 TCCTCTTCAGCTGAAAGTTCTTTC 58.940 41.667 28.16 15.70 35.30 2.62
5564 6214 4.640364 CTCCTCTTCAGCTGAAAGTTCTT 58.360 43.478 28.16 0.00 35.30 2.52
5662 6312 1.957562 CGGGTTCGTCAGAGTGTCT 59.042 57.895 0.00 0.00 0.00 3.41
5755 6405 2.124819 CAGATGCTGGAAGGCGCT 60.125 61.111 7.64 0.00 34.52 5.92
6151 6801 2.097038 CAAGCTCAGCGACTTCGGG 61.097 63.158 0.02 0.00 40.23 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.