Multiple sequence alignment - TraesCS5A01G483800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G483800 chr5A 100.000 7327 0 0 1 7327 654624073 654616747 0.000000e+00 13531.0
1 TraesCS5A01G483800 chr5A 90.756 476 36 7 31 503 6003109 6002639 4.820000e-176 628.0
2 TraesCS5A01G483800 chr5A 87.660 235 24 4 5328 5562 152481080 152480851 1.210000e-67 268.0
3 TraesCS5A01G483800 chr5A 83.539 243 31 8 5323 5562 136397875 136398111 1.240000e-52 219.0
4 TraesCS5A01G483800 chr5A 95.946 74 3 0 813 886 368789264 368789191 3.590000e-23 121.0
5 TraesCS5A01G483800 chr5A 87.619 105 10 1 2937 3038 701967749 701967853 1.290000e-22 119.0
6 TraesCS5A01G483800 chr5A 91.304 69 4 2 4623 4691 399319428 399319362 7.830000e-15 93.5
7 TraesCS5A01G483800 chr5B 94.267 2250 67 14 1785 3986 664026552 664024317 0.000000e+00 3384.0
8 TraesCS5A01G483800 chr5B 95.780 1019 36 5 5651 6663 664022875 664021858 0.000000e+00 1637.0
9 TraesCS5A01G483800 chr5B 95.186 644 24 4 4689 5329 664023585 664022946 0.000000e+00 1011.0
10 TraesCS5A01G483800 chr5B 94.817 656 14 5 3985 4624 664024235 664023584 0.000000e+00 1005.0
11 TraesCS5A01G483800 chr5B 90.507 769 44 15 956 1707 664027303 664026547 0.000000e+00 989.0
12 TraesCS5A01G483800 chr5B 91.085 673 27 7 6641 7308 664021853 664021209 0.000000e+00 880.0
13 TraesCS5A01G483800 chr5B 90.291 103 8 2 1698 1798 86069481 86069379 4.610000e-27 134.0
14 TraesCS5A01G483800 chr5D 93.880 2075 66 18 1785 3813 527502967 527500908 0.000000e+00 3072.0
15 TraesCS5A01G483800 chr5D 93.177 1788 85 12 5556 7311 527499364 527497582 0.000000e+00 2591.0
16 TraesCS5A01G483800 chr5D 95.192 832 15 7 3810 4624 527500815 527499992 0.000000e+00 1291.0
17 TraesCS5A01G483800 chr5D 91.470 762 50 6 956 1707 527503718 527502962 0.000000e+00 1033.0
18 TraesCS5A01G483800 chr5D 95.880 631 23 1 4699 5329 527499990 527499363 0.000000e+00 1018.0
19 TraesCS5A01G483800 chr5D 87.888 322 23 5 504 811 549882567 549882248 1.500000e-96 364.0
20 TraesCS5A01G483800 chr5D 94.483 145 8 0 5327 5471 529218328 529218184 2.660000e-54 224.0
21 TraesCS5A01G483800 chr5D 94.444 144 7 1 5328 5471 528616786 528616644 3.440000e-53 220.0
22 TraesCS5A01G483800 chr5D 85.047 107 10 5 2937 3039 485358445 485358549 3.620000e-18 104.0
23 TraesCS5A01G483800 chr5D 91.892 74 4 2 4621 4694 441356340 441356411 1.300000e-17 102.0
24 TraesCS5A01G483800 chr5D 90.541 74 3 2 4621 4690 498669757 498669830 2.180000e-15 95.3
25 TraesCS5A01G483800 chr5D 83.486 109 9 8 2937 3039 506089472 506089367 7.830000e-15 93.5
26 TraesCS5A01G483800 chr5D 88.000 75 5 2 4620 4690 26518303 26518229 1.310000e-12 86.1
27 TraesCS5A01G483800 chr5D 80.909 110 10 8 2937 3039 411630894 411630999 7.880000e-10 76.8
28 TraesCS5A01G483800 chr1D 86.504 778 76 17 31 790 97541564 97542330 0.000000e+00 828.0
29 TraesCS5A01G483800 chr1D 93.836 146 9 0 5326 5471 463470769 463470914 3.440000e-53 220.0
30 TraesCS5A01G483800 chr1D 93.197 147 10 0 5325 5471 332997339 332997193 4.450000e-52 217.0
31 TraesCS5A01G483800 chr1D 93.056 144 10 0 5328 5471 445061610 445061753 2.070000e-50 211.0
32 TraesCS5A01G483800 chr1D 95.455 88 2 1 5471 5558 296532093 296532008 9.910000e-29 139.0
33 TraesCS5A01G483800 chr1D 94.505 91 2 2 5471 5560 12546923 12547011 3.570000e-28 137.0
34 TraesCS5A01G483800 chr1D 95.349 86 4 0 1702 1787 460866502 460866587 3.570000e-28 137.0
35 TraesCS5A01G483800 chr1D 90.816 98 9 0 1694 1791 124331897 124331994 1.660000e-26 132.0
36 TraesCS5A01G483800 chr1D 92.683 82 2 3 800 879 246416456 246416535 1.670000e-21 115.0
37 TraesCS5A01G483800 chr1D 91.026 78 7 0 4620 4697 464799724 464799801 1.010000e-18 106.0
38 TraesCS5A01G483800 chr1D 88.406 69 7 1 4623 4690 16532650 16532718 1.690000e-11 82.4
39 TraesCS5A01G483800 chr1D 88.571 70 2 2 4621 4690 48193814 48193877 6.090000e-11 80.5
40 TraesCS5A01G483800 chr1D 86.667 75 7 3 4620 4694 246070231 246070302 6.090000e-11 80.5
41 TraesCS5A01G483800 chr2D 89.723 506 40 8 7 503 407960188 407960690 2.880000e-178 636.0
42 TraesCS5A01G483800 chr2D 89.456 294 23 2 504 790 450874952 450875244 1.500000e-96 364.0
43 TraesCS5A01G483800 chr2D 88.814 295 25 2 504 790 565133069 565133363 9.040000e-94 355.0
44 TraesCS5A01G483800 chr2D 94.079 152 8 1 5320 5471 134301656 134301506 5.720000e-56 230.0
45 TraesCS5A01G483800 chr2D 97.647 85 2 0 1703 1787 412382603 412382519 5.920000e-31 147.0
46 TraesCS5A01G483800 chr7D 89.349 507 36 13 7 503 62236368 62236866 8.070000e-174 621.0
47 TraesCS5A01G483800 chr7D 89.305 187 15 4 5319 5502 219833752 219833936 5.720000e-56 230.0
48 TraesCS5A01G483800 chr7D 95.172 145 7 0 5328 5472 465477946 465477802 5.720000e-56 230.0
49 TraesCS5A01G483800 chr7D 94.558 147 8 0 5325 5471 454079244 454079390 2.060000e-55 228.0
50 TraesCS5A01G483800 chr7D 90.090 111 7 3 5464 5572 386510868 386510976 2.760000e-29 141.0
51 TraesCS5A01G483800 chr7D 93.617 94 4 1 1703 1794 545608372 545608465 9.910000e-29 139.0
52 TraesCS5A01G483800 chr7D 91.579 95 5 2 2948 3039 414373136 414373042 2.150000e-25 128.0
53 TraesCS5A01G483800 chr7D 85.714 105 12 1 2937 3038 177117200 177117096 2.800000e-19 108.0
54 TraesCS5A01G483800 chr7D 93.056 72 4 1 4620 4690 46702734 46702663 3.620000e-18 104.0
55 TraesCS5A01G483800 chr7D 82.301 113 13 5 2937 3044 177118578 177118468 2.820000e-14 91.6
56 TraesCS5A01G483800 chr7D 87.654 81 5 3 4618 4694 184573354 184573433 1.010000e-13 89.8
57 TraesCS5A01G483800 chr6A 89.130 506 36 12 12 503 592701141 592700641 4.860000e-171 612.0
58 TraesCS5A01G483800 chr6A 88.327 514 39 10 7 503 186525157 186524648 1.360000e-166 597.0
59 TraesCS5A01G483800 chr6A 93.793 145 9 0 5327 5471 47465880 47465736 1.240000e-52 219.0
60 TraesCS5A01G483800 chr6A 93.750 144 9 0 5328 5471 151466970 151467113 4.450000e-52 217.0
61 TraesCS5A01G483800 chr6A 82.353 238 31 9 5328 5562 134548791 134548562 5.800000e-46 196.0
62 TraesCS5A01G483800 chr6A 97.674 86 2 0 1702 1787 558041265 558041350 1.650000e-31 148.0
63 TraesCS5A01G483800 chr6A 92.233 103 4 3 5458 5558 606117508 606117608 7.660000e-30 143.0
64 TraesCS5A01G483800 chr6A 94.565 92 3 2 5467 5558 220491951 220492040 2.760000e-29 141.0
65 TraesCS5A01G483800 chr6A 94.444 90 5 0 1700 1789 51480530 51480619 9.910000e-29 139.0
66 TraesCS5A01G483800 chr6A 92.079 101 5 3 5468 5567 74582594 74582692 9.910000e-29 139.0
67 TraesCS5A01G483800 chr6A 91.262 103 5 3 5466 5567 177807542 177807443 3.570000e-28 137.0
68 TraesCS5A01G483800 chr6A 91.919 99 6 2 1701 1797 610131824 610131922 3.570000e-28 137.0
69 TraesCS5A01G483800 chr6A 90.909 99 9 0 1693 1791 358572195 358572293 4.610000e-27 134.0
70 TraesCS5A01G483800 chr6A 87.619 105 10 1 2937 3038 571028445 571028341 1.290000e-22 119.0
71 TraesCS5A01G483800 chr6D 88.802 509 42 12 7 503 422220412 422220917 1.750000e-170 610.0
72 TraesCS5A01G483800 chr6D 94.444 144 8 0 5328 5471 428908338 428908481 9.570000e-54 222.0
73 TraesCS5A01G483800 chr6D 93.056 144 10 0 5328 5471 145462624 145462481 2.070000e-50 211.0
74 TraesCS5A01G483800 chr6D 93.056 144 9 1 5328 5471 431160668 431160810 7.450000e-50 209.0
75 TraesCS5A01G483800 chr6D 92.361 144 11 0 5328 5471 90112399 90112256 9.640000e-49 206.0
76 TraesCS5A01G483800 chr6D 95.699 93 1 2 5465 5557 316625864 316625953 5.920000e-31 147.0
77 TraesCS5A01G483800 chr6D 96.629 89 2 1 1703 1790 441898296 441898384 5.920000e-31 147.0
78 TraesCS5A01G483800 chr6D 95.556 90 4 0 1702 1791 385917026 385916937 2.130000e-30 145.0
79 TraesCS5A01G483800 chr6D 95.402 87 2 1 5471 5557 6507673 6507757 3.570000e-28 137.0
80 TraesCS5A01G483800 chr6D 95.402 87 2 2 5471 5557 229430747 229430663 3.570000e-28 137.0
81 TraesCS5A01G483800 chr6D 92.632 95 5 1 5471 5565 4556030 4555938 1.280000e-27 135.0
82 TraesCS5A01G483800 chr6D 93.478 92 4 1 5471 5562 31474940 31474851 1.280000e-27 135.0
83 TraesCS5A01G483800 chr6D 95.294 85 4 0 1703 1787 248004002 248004086 1.280000e-27 135.0
84 TraesCS5A01G483800 chr6D 91.919 99 4 3 5466 5564 260030287 260030193 1.280000e-27 135.0
85 TraesCS5A01G483800 chr6D 91.837 98 4 3 5467 5563 159020655 159020749 4.610000e-27 134.0
86 TraesCS5A01G483800 chr6D 93.407 91 2 1 1699 1789 28336697 28336611 1.660000e-26 132.0
87 TraesCS5A01G483800 chr6D 90.099 101 9 1 1687 1787 157328010 157328109 5.970000e-26 130.0
88 TraesCS5A01G483800 chr6D 84.112 107 8 5 2937 3037 448904463 448904566 2.180000e-15 95.3
89 TraesCS5A01G483800 chr6D 88.158 76 6 2 4621 4694 13600225 13600151 3.640000e-13 87.9
90 TraesCS5A01G483800 chr6D 96.226 53 1 1 4619 4671 377305578 377305629 1.310000e-12 86.1
91 TraesCS5A01G483800 chr6D 88.571 70 6 2 4624 4693 384288234 384288167 4.710000e-12 84.2
92 TraesCS5A01G483800 chr6D 88.000 75 4 2 4620 4694 446215206 446215275 4.710000e-12 84.2
93 TraesCS5A01G483800 chr6D 97.917 48 0 1 4622 4669 382702953 382702907 1.690000e-11 82.4
94 TraesCS5A01G483800 chr6D 96.000 50 1 1 4620 4669 305158193 305158145 6.090000e-11 80.5
95 TraesCS5A01G483800 chr6D 92.727 55 2 2 4619 4672 126426663 126426610 2.190000e-10 78.7
96 TraesCS5A01G483800 chr6D 94.118 51 2 1 2988 3038 451106572 451106523 7.880000e-10 76.8
97 TraesCS5A01G483800 chr6D 100.000 28 0 0 3012 3039 431932178 431932205 1.300000e-02 52.8
98 TraesCS5A01G483800 chr3D 88.269 520 37 16 3 503 545335739 545336253 1.050000e-167 601.0
99 TraesCS5A01G483800 chr3D 89.796 294 21 4 504 790 137217921 137218212 1.160000e-97 368.0
100 TraesCS5A01G483800 chr3D 88.362 232 20 5 5327 5557 400274800 400274575 9.370000e-69 272.0
101 TraesCS5A01G483800 chr3D 95.238 147 7 0 5325 5471 540564743 540564889 4.420000e-57 233.0
102 TraesCS5A01G483800 chr3D 94.444 144 8 0 5328 5471 87926000 87926143 9.570000e-54 222.0
103 TraesCS5A01G483800 chr3D 95.506 89 4 0 1703 1791 37369011 37369099 7.660000e-30 143.0
104 TraesCS5A01G483800 chr3D 84.211 114 15 1 2929 3039 352112407 352112294 2.800000e-19 108.0
105 TraesCS5A01G483800 chr3D 90.909 77 4 2 4617 4690 20751706 20751782 4.680000e-17 100.0
106 TraesCS5A01G483800 chr3D 86.022 93 6 7 4606 4695 379823780 379823868 7.830000e-15 93.5
107 TraesCS5A01G483800 chr3D 88.462 78 4 3 4621 4694 456650420 456650496 1.010000e-13 89.8
108 TraesCS5A01G483800 chr3D 90.000 70 6 1 4621 4690 567708628 567708560 1.010000e-13 89.8
109 TraesCS5A01G483800 chr4A 89.831 472 41 3 35 503 603959869 603959402 3.780000e-167 599.0
110 TraesCS5A01G483800 chr4A 89.153 295 22 6 504 790 709847181 709847473 6.990000e-95 359.0
111 TraesCS5A01G483800 chr4A 95.833 144 6 0 5328 5471 137967140 137966997 4.420000e-57 233.0
112 TraesCS5A01G483800 chr4A 91.209 91 3 4 800 887 550960020 550959932 1.290000e-22 119.0
113 TraesCS5A01G483800 chr4A 92.405 79 2 3 800 876 47138002 47138078 7.770000e-20 110.0
114 TraesCS5A01G483800 chr4D 89.116 294 21 5 504 790 111052098 111052387 9.040000e-94 355.0
115 TraesCS5A01G483800 chr4D 95.139 144 7 0 5328 5471 34661688 34661545 2.060000e-55 228.0
116 TraesCS5A01G483800 chr4D 92.517 147 11 0 5325 5471 334164388 334164534 2.070000e-50 211.0
117 TraesCS5A01G483800 chr4D 93.056 144 10 0 5328 5471 435010530 435010387 2.070000e-50 211.0
118 TraesCS5A01G483800 chr4D 93.056 144 7 1 5328 5471 25439954 25439814 2.680000e-49 207.0
119 TraesCS5A01G483800 chr4D 96.471 85 3 0 1703 1787 14928671 14928755 2.760000e-29 141.0
120 TraesCS5A01G483800 chr4D 95.455 88 2 1 5471 5558 416450865 416450780 9.910000e-29 139.0
121 TraesCS5A01G483800 chr4D 94.444 90 3 1 5468 5557 461574590 461574677 3.570000e-28 137.0
122 TraesCS5A01G483800 chr4D 91.753 97 8 0 1696 1792 270678542 270678638 1.280000e-27 135.0
123 TraesCS5A01G483800 chr4D 89.474 76 1 2 4622 4690 486931323 486931248 1.010000e-13 89.8
124 TraesCS5A01G483800 chr4D 97.917 48 1 0 4621 4668 8926460 8926507 4.710000e-12 84.2
125 TraesCS5A01G483800 chr4D 92.982 57 2 2 4619 4674 50297733 50297678 1.690000e-11 82.4
126 TraesCS5A01G483800 chr4D 88.406 69 3 4 4605 4669 204732087 204732154 2.190000e-10 78.7
127 TraesCS5A01G483800 chr3A 88.776 294 25 2 504 790 712136482 712136774 3.250000e-93 353.0
128 TraesCS5A01G483800 chr3A 92.857 84 2 3 808 889 628192021 628192102 1.290000e-22 119.0
129 TraesCS5A01G483800 chr3A 93.671 79 2 2 808 884 701344597 701344674 1.670000e-21 115.0
130 TraesCS5A01G483800 chr2A 88.776 294 25 2 504 790 766512762 766513054 3.250000e-93 353.0
131 TraesCS5A01G483800 chr2A 89.316 234 19 5 5328 5561 733542587 733542360 9.300000e-74 289.0
132 TraesCS5A01G483800 chr2A 93.671 79 3 1 808 884 98121625 98121703 4.640000e-22 117.0
133 TraesCS5A01G483800 chr6B 87.764 237 22 5 5328 5561 447890839 447890607 3.370000e-68 270.0
134 TraesCS5A01G483800 chr6B 84.255 235 32 4 5328 5562 171967260 171967031 2.660000e-54 224.0
135 TraesCS5A01G483800 chr6B 91.919 99 7 1 1703 1801 42774659 42774562 3.570000e-28 137.0
136 TraesCS5A01G483800 chr6B 85.496 131 13 5 5433 5562 507405747 507405872 1.660000e-26 132.0
137 TraesCS5A01G483800 chr6B 90.411 73 4 3 4618 4690 674380194 674380263 7.830000e-15 93.5
138 TraesCS5A01G483800 chr7B 86.498 237 25 5 5328 5562 84394334 84394103 3.390000e-63 254.0
139 TraesCS5A01G483800 chr7B 94.681 94 5 0 1694 1787 246003766 246003859 5.920000e-31 147.0
140 TraesCS5A01G483800 chr7B 95.604 91 4 0 1700 1790 731020560 731020470 5.920000e-31 147.0
141 TraesCS5A01G483800 chr7A 91.620 179 12 2 5324 5502 387176553 387176728 2.040000e-60 244.0
142 TraesCS5A01G483800 chr7A 92.929 99 6 1 1693 1790 422475162 422475064 7.660000e-30 143.0
143 TraesCS5A01G483800 chr7A 92.857 98 5 2 1695 1791 556151909 556152005 2.760000e-29 141.0
144 TraesCS5A01G483800 chr7A 93.902 82 2 3 800 880 526366821 526366900 3.590000e-23 121.0
145 TraesCS5A01G483800 chr7A 86.667 105 11 1 2937 3038 180659616 180659512 6.010000e-21 113.0
146 TraesCS5A01G483800 chr7A 93.056 72 3 2 4619 4690 135963975 135963906 3.620000e-18 104.0
147 TraesCS5A01G483800 chr7A 90.789 76 1 2 4621 4690 60725518 60725593 6.050000e-16 97.1
148 TraesCS5A01G483800 chr1A 85.106 235 29 5 5328 5562 580659132 580659360 1.230000e-57 235.0
149 TraesCS5A01G483800 chr1A 94.565 92 2 3 5466 5557 107663283 107663195 9.910000e-29 139.0
150 TraesCS5A01G483800 chr1A 94.565 92 2 3 5467 5557 272648118 272648029 9.910000e-29 139.0
151 TraesCS5A01G483800 chr1A 91.667 96 8 0 1692 1787 518044806 518044901 4.610000e-27 134.0
152 TraesCS5A01G483800 chr1A 88.542 96 7 4 800 892 390635848 390635754 6.010000e-21 113.0
153 TraesCS5A01G483800 chr1A 88.889 72 5 3 4621 4690 66895537 66895607 1.310000e-12 86.1
154 TraesCS5A01G483800 chr4B 85.000 240 24 9 5328 5562 568607655 568607423 4.420000e-57 233.0
155 TraesCS5A01G483800 chr4B 92.453 106 6 2 1683 1787 53486444 53486548 4.580000e-32 150.0
156 TraesCS5A01G483800 chr4B 94.565 92 2 3 5467 5557 373351672 373351583 9.910000e-29 139.0
157 TraesCS5A01G483800 chr4B 92.708 96 5 2 1703 1796 609928521 609928616 3.570000e-28 137.0
158 TraesCS5A01G483800 chr4B 87.179 78 7 2 4623 4697 381378311 381378234 1.310000e-12 86.1
159 TraesCS5A01G483800 chr4B 85.366 82 6 6 4623 4698 526965903 526965822 6.090000e-11 80.5
160 TraesCS5A01G483800 chr4B 100.000 28 0 0 3011 3038 417349194 417349167 1.300000e-02 52.8
161 TraesCS5A01G483800 chr1B 95.833 144 6 0 5328 5471 334894666 334894523 4.420000e-57 233.0
162 TraesCS5A01G483800 chr1B 95.833 96 2 2 5468 5563 509151065 509151158 3.540000e-33 154.0
163 TraesCS5A01G483800 chr1B 92.857 98 5 2 5467 5564 481238770 481238675 2.760000e-29 141.0
164 TraesCS5A01G483800 chr1B 91.667 72 3 2 4623 4691 344044768 344044839 6.050000e-16 97.1
165 TraesCS5A01G483800 chr2B 83.673 245 31 7 5328 5571 15005409 15005645 9.570000e-54 222.0
166 TraesCS5A01G483800 chr2B 91.667 72 4 2 4620 4690 27088458 27088388 1.680000e-16 99.0
167 TraesCS5A01G483800 chrUn 93.056 144 10 0 5328 5471 27078514 27078657 2.070000e-50 211.0
168 TraesCS5A01G483800 chrUn 91.946 149 10 2 5323 5471 81477803 81477657 2.680000e-49 207.0
169 TraesCS5A01G483800 chrUn 91.667 144 12 0 5328 5471 96474145 96474002 4.480000e-47 200.0
170 TraesCS5A01G483800 chrUn 91.667 144 9 3 5328 5471 3698028 3698168 5.800000e-46 196.0
171 TraesCS5A01G483800 chrUn 90.604 149 13 1 5323 5471 296641801 296641948 5.800000e-46 196.0
172 TraesCS5A01G483800 chrUn 90.604 149 13 1 5323 5471 319189104 319188957 5.800000e-46 196.0
173 TraesCS5A01G483800 chrUn 90.604 149 13 1 5323 5471 319797648 319797501 5.800000e-46 196.0
174 TraesCS5A01G483800 chrUn 90.972 144 13 0 5328 5471 95767611 95767468 2.090000e-45 195.0
175 TraesCS5A01G483800 chrUn 89.172 157 13 3 5328 5482 87983400 87983246 7.500000e-45 193.0
176 TraesCS5A01G483800 chrUn 90.411 146 14 0 5326 5471 141680909 141680764 7.500000e-45 193.0
177 TraesCS5A01G483800 chrUn 89.542 153 14 2 5320 5471 369913180 369913331 7.500000e-45 193.0
178 TraesCS5A01G483800 chrUn 95.556 90 2 1 5471 5560 27476039 27475952 7.660000e-30 143.0
179 TraesCS5A01G483800 chrUn 93.684 95 3 3 5464 5557 325927175 325927267 9.910000e-29 139.0
180 TraesCS5A01G483800 chrUn 92.708 96 6 1 1693 1787 55723707 55723612 3.570000e-28 137.0
181 TraesCS5A01G483800 chrUn 95.349 86 4 0 1703 1788 226012891 226012806 3.570000e-28 137.0
182 TraesCS5A01G483800 chrUn 91.919 99 5 3 5467 5564 27602561 27602657 1.280000e-27 135.0
183 TraesCS5A01G483800 chrUn 94.382 89 3 1 5471 5559 87109121 87109207 1.280000e-27 135.0
184 TraesCS5A01G483800 chrUn 92.553 94 5 1 5471 5564 369753176 369753267 4.610000e-27 134.0
185 TraesCS5A01G483800 chrUn 93.407 91 5 1 1702 1791 371558048 371558138 4.610000e-27 134.0
186 TraesCS5A01G483800 chrUn 93.407 91 5 1 1702 1791 371616855 371616945 4.610000e-27 134.0
187 TraesCS5A01G483800 chrUn 89.524 105 8 3 1687 1790 16901724 16901622 5.970000e-26 130.0
188 TraesCS5A01G483800 chrUn 94.118 85 5 0 1703 1787 67407112 67407028 5.970000e-26 130.0
189 TraesCS5A01G483800 chrUn 92.308 91 5 1 5471 5561 42198769 42198681 2.150000e-25 128.0
190 TraesCS5A01G483800 chrUn 91.579 95 5 2 5471 5564 132121232 132121140 2.150000e-25 128.0
191 TraesCS5A01G483800 chrUn 92.308 91 5 2 5470 5560 226884330 226884242 2.150000e-25 128.0
192 TraesCS5A01G483800 chrUn 93.182 88 4 2 5470 5557 258641818 258641903 2.150000e-25 128.0
193 TraesCS5A01G483800 chrUn 92.308 91 5 2 5467 5557 314263332 314263420 2.150000e-25 128.0
194 TraesCS5A01G483800 chrUn 92.941 85 6 0 1703 1787 2693230 2693314 2.780000e-24 124.0
195 TraesCS5A01G483800 chrUn 92.941 85 6 0 1703 1787 244923812 244923896 2.780000e-24 124.0
196 TraesCS5A01G483800 chrUn 92.941 85 6 0 1703 1787 287095700 287095784 2.780000e-24 124.0
197 TraesCS5A01G483800 chrUn 88.462 104 9 2 5459 5562 85135369 85135469 9.980000e-24 122.0
198 TraesCS5A01G483800 chrUn 92.045 88 6 1 1701 1788 131255909 131255995 9.980000e-24 122.0
199 TraesCS5A01G483800 chrUn 91.304 69 5 1 4623 4691 307259682 307259615 7.830000e-15 93.5
200 TraesCS5A01G483800 chrUn 87.952 83 3 3 4619 4694 110687488 110687406 2.820000e-14 91.6
201 TraesCS5A01G483800 chrUn 97.917 48 0 1 4622 4669 110002904 110002950 1.690000e-11 82.4
202 TraesCS5A01G483800 chrUn 97.872 47 0 1 4623 4669 222975854 222975809 6.090000e-11 80.5
203 TraesCS5A01G483800 chrUn 97.872 47 0 1 4623 4669 303647988 303647943 6.090000e-11 80.5
204 TraesCS5A01G483800 chrUn 97.872 47 0 1 4623 4669 463124738 463124783 6.090000e-11 80.5
205 TraesCS5A01G483800 chrUn 94.118 51 2 1 4619 4669 67634463 67634414 7.880000e-10 76.8
206 TraesCS5A01G483800 chrUn 95.833 48 1 1 4622 4669 108327592 108327638 7.880000e-10 76.8
207 TraesCS5A01G483800 chrUn 94.118 51 1 2 4619 4669 287058823 287058871 7.880000e-10 76.8
208 TraesCS5A01G483800 chrUn 95.745 47 1 1 4623 4669 6371185 6371230 2.840000e-09 75.0
209 TraesCS5A01G483800 chrUn 94.000 50 2 1 4623 4671 351148879 351148830 2.840000e-09 75.0
210 TraesCS5A01G483800 chrUn 82.022 89 6 6 4623 4707 293281915 293281997 4.740000e-07 67.6
211 TraesCS5A01G483800 chr3B 91.429 70 6 0 4621 4690 771798707 771798776 6.050000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G483800 chr5A 654616747 654624073 7326 True 13531.000000 13531 100.0000 1 7327 1 chr5A.!!$R5 7326
1 TraesCS5A01G483800 chr5B 664021209 664027303 6094 True 1484.333333 3384 93.6070 956 7308 6 chr5B.!!$R2 6352
2 TraesCS5A01G483800 chr5D 527497582 527503718 6136 True 1801.000000 3072 93.9198 956 7311 5 chr5D.!!$R6 6355
3 TraesCS5A01G483800 chr1D 97541564 97542330 766 False 828.000000 828 86.5040 31 790 1 chr1D.!!$F4 759
4 TraesCS5A01G483800 chr2D 407960188 407960690 502 False 636.000000 636 89.7230 7 503 1 chr2D.!!$F1 496
5 TraesCS5A01G483800 chr6A 592700641 592701141 500 True 612.000000 612 89.1300 12 503 1 chr6A.!!$R6 491
6 TraesCS5A01G483800 chr6A 186524648 186525157 509 True 597.000000 597 88.3270 7 503 1 chr6A.!!$R4 496
7 TraesCS5A01G483800 chr6D 422220412 422220917 505 False 610.000000 610 88.8020 7 503 1 chr6D.!!$F7 496
8 TraesCS5A01G483800 chr3D 545335739 545336253 514 False 601.000000 601 88.2690 3 503 1 chr3D.!!$F8 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 975 0.107654 GACCCAACTCCTCCAATCCG 60.108 60.000 0.00 0.00 0.00 4.18 F
1305 1356 0.033894 TCCCCTAACCAATTTCGGCC 60.034 55.000 0.00 0.00 0.00 6.13 F
1914 1970 0.248565 CAGAGGCTGCAGCTTGTCTA 59.751 55.000 35.82 0.00 41.70 2.59 F
1989 2045 0.877649 CATCGCTCCATCTTGGACGG 60.878 60.000 14.21 2.29 42.67 4.79 F
3202 3281 1.269569 GGCCAGTTTACTGCGCTTTTT 60.270 47.619 9.73 0.00 42.47 1.94 F
4637 4950 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37 F
4638 4951 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00 F
4757 5070 0.394565 AAGCGAGCTGGTTTGTCTCT 59.605 50.000 0.00 0.00 33.66 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2898 2971 0.098025 ACATTTTAATGTCGGCGGCG 59.902 50.000 27.15 27.15 46.10 6.46 R
2931 3004 0.688087 ATGGGTCGGAGGGAGAACTC 60.688 60.000 0.00 0.00 36.76 3.01 R
3589 3692 0.035630 GAGAGAGCAATGGCACCTGT 60.036 55.000 0.00 0.00 44.61 4.00 R
3664 3767 1.286260 CCAGCGGCTACGACTATCC 59.714 63.158 0.26 0.00 44.60 2.59 R
4673 4986 0.264955 ACATACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00 R
5842 6167 1.134367 TCAGTTAAGGATCTCACCGCG 59.866 52.381 0.00 0.00 34.73 6.46 R
6096 6421 1.302993 GGCAGGGGAAAACGCTACA 60.303 57.895 0.00 0.00 40.92 2.74 R
6338 6663 1.765314 AGAACGCTAATCTGGAGCCAT 59.235 47.619 0.00 0.00 36.53 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 182 1.676006 CCAGAGTCACGGTTTTGCTTT 59.324 47.619 0.00 0.00 0.00 3.51
182 196 2.430921 CTTTCGCGAGAGGCACGT 60.431 61.111 18.35 0.00 43.84 4.49
322 338 1.279527 CTTACGCGAAAGTCACGGCA 61.280 55.000 15.93 0.00 0.00 5.69
503 532 0.316689 CACGGTTTTGCTTCCACGAC 60.317 55.000 0.00 0.00 0.00 4.34
504 533 0.463116 ACGGTTTTGCTTCCACGACT 60.463 50.000 0.00 0.00 0.00 4.18
505 534 0.234884 CGGTTTTGCTTCCACGACTC 59.765 55.000 0.00 0.00 0.00 3.36
507 536 1.947456 GGTTTTGCTTCCACGACTCTT 59.053 47.619 0.00 0.00 0.00 2.85
508 537 2.357952 GGTTTTGCTTCCACGACTCTTT 59.642 45.455 0.00 0.00 0.00 2.52
625 660 7.636150 ATCAACATGGGATCTAGTTTTGAAG 57.364 36.000 0.00 0.00 0.00 3.02
626 661 6.542821 TCAACATGGGATCTAGTTTTGAAGT 58.457 36.000 0.00 0.00 0.00 3.01
633 668 6.710744 TGGGATCTAGTTTTGAAGTTCTTGAC 59.289 38.462 4.17 0.25 0.00 3.18
635 670 6.424207 GGATCTAGTTTTGAAGTTCTTGACGT 59.576 38.462 4.17 0.00 0.00 4.34
637 672 6.334989 TCTAGTTTTGAAGTTCTTGACGTGA 58.665 36.000 4.17 0.00 0.00 4.35
638 673 5.873179 AGTTTTGAAGTTCTTGACGTGAA 57.127 34.783 4.17 0.00 0.00 3.18
649 684 4.893608 TCTTGACGTGAAGAATCCAATGA 58.106 39.130 15.37 0.00 0.00 2.57
656 691 6.615088 ACGTGAAGAATCCAATGATGAAAAG 58.385 36.000 0.00 0.00 0.00 2.27
683 718 2.481185 GAGATTTGGACGCACGGTTTAA 59.519 45.455 0.00 0.00 0.00 1.52
732 773 5.585820 AAAAAGGAAAAACTCGCAGGTTA 57.414 34.783 0.00 0.00 0.00 2.85
746 787 0.662374 AGGTTACGACAAGTGACGCG 60.662 55.000 3.53 3.53 39.92 6.01
790 831 3.288092 GACTTGGGAAAGTGGAGTGTTT 58.712 45.455 0.00 0.00 32.22 2.83
791 832 3.023832 ACTTGGGAAAGTGGAGTGTTTG 58.976 45.455 0.00 0.00 0.00 2.93
792 833 3.287222 CTTGGGAAAGTGGAGTGTTTGA 58.713 45.455 0.00 0.00 0.00 2.69
793 834 2.930950 TGGGAAAGTGGAGTGTTTGAG 58.069 47.619 0.00 0.00 0.00 3.02
794 835 2.241176 TGGGAAAGTGGAGTGTTTGAGT 59.759 45.455 0.00 0.00 0.00 3.41
795 836 3.456644 TGGGAAAGTGGAGTGTTTGAGTA 59.543 43.478 0.00 0.00 0.00 2.59
796 837 3.813724 GGGAAAGTGGAGTGTTTGAGTAC 59.186 47.826 0.00 0.00 0.00 2.73
797 838 4.444449 GGGAAAGTGGAGTGTTTGAGTACT 60.444 45.833 0.00 0.00 0.00 2.73
798 839 4.750598 GGAAAGTGGAGTGTTTGAGTACTC 59.249 45.833 16.32 16.32 41.95 2.59
812 853 9.649167 TGTTTGAGTACTCCTTAATTAGTAAGC 57.351 33.333 20.11 6.34 38.34 3.09
813 854 9.649167 GTTTGAGTACTCCTTAATTAGTAAGCA 57.351 33.333 20.11 0.00 38.34 3.91
816 857 9.817809 TGAGTACTCCTTAATTAGTAAGCAATG 57.182 33.333 20.11 0.00 38.34 2.82
818 859 9.819267 AGTACTCCTTAATTAGTAAGCAATGAC 57.181 33.333 0.00 0.00 38.34 3.06
819 860 9.595823 GTACTCCTTAATTAGTAAGCAATGACA 57.404 33.333 0.00 0.00 38.34 3.58
823 864 9.778741 TCCTTAATTAGTAAGCAATGACATAGG 57.221 33.333 0.00 0.00 38.34 2.57
824 865 9.778741 CCTTAATTAGTAAGCAATGACATAGGA 57.221 33.333 0.00 0.00 38.34 2.94
829 870 9.988815 ATTAGTAAGCAATGACATAGGACTTAG 57.011 33.333 0.00 0.00 0.00 2.18
830 871 7.661536 AGTAAGCAATGACATAGGACTTAGA 57.338 36.000 0.00 0.00 0.00 2.10
831 872 8.256356 AGTAAGCAATGACATAGGACTTAGAT 57.744 34.615 0.00 0.00 0.00 1.98
832 873 9.368416 AGTAAGCAATGACATAGGACTTAGATA 57.632 33.333 0.00 0.00 0.00 1.98
835 876 7.102346 AGCAATGACATAGGACTTAGATATGC 58.898 38.462 0.00 0.00 31.44 3.14
836 877 6.875726 GCAATGACATAGGACTTAGATATGCA 59.124 38.462 0.00 0.00 31.44 3.96
837 878 7.388776 GCAATGACATAGGACTTAGATATGCAA 59.611 37.037 0.00 0.00 31.44 4.08
838 879 9.445878 CAATGACATAGGACTTAGATATGCAAT 57.554 33.333 0.00 0.00 31.44 3.56
841 882 9.314133 TGACATAGGACTTAGATATGCAATACT 57.686 33.333 0.00 0.00 31.44 2.12
847 888 8.043710 AGGACTTAGATATGCAATACTTATGGC 58.956 37.037 0.00 0.00 33.16 4.40
848 889 7.824289 GGACTTAGATATGCAATACTTATGGCA 59.176 37.037 0.69 0.69 45.92 4.92
849 890 8.553459 ACTTAGATATGCAATACTTATGGCAC 57.447 34.615 0.16 0.00 44.77 5.01
850 891 8.156820 ACTTAGATATGCAATACTTATGGCACA 58.843 33.333 0.16 0.00 44.77 4.57
851 892 9.170734 CTTAGATATGCAATACTTATGGCACAT 57.829 33.333 0.16 0.00 44.77 3.21
852 893 7.621428 AGATATGCAATACTTATGGCACATC 57.379 36.000 8.33 8.33 44.77 3.06
853 894 7.400439 AGATATGCAATACTTATGGCACATCT 58.600 34.615 11.99 11.99 46.66 2.90
854 895 8.722480 GATATGCAATACTTATGGCACATCTA 57.278 34.615 8.94 0.00 44.77 1.98
855 896 8.728337 ATATGCAATACTTATGGCACATCTAG 57.272 34.615 0.16 0.00 44.77 2.43
856 897 6.772605 ATGCAATACTTATGGCACATCTAGA 58.227 36.000 0.16 0.00 44.77 2.43
857 898 7.400439 ATGCAATACTTATGGCACATCTAGAT 58.600 34.615 0.00 0.00 44.77 1.98
858 899 7.336176 ATGCAATACTTATGGCACATCTAGATG 59.664 37.037 27.63 27.63 44.77 2.90
897 938 8.827677 ACTGAATTAGTAATTAGTGATTTCGGC 58.172 33.333 8.12 1.31 38.04 5.54
898 939 8.958119 TGAATTAGTAATTAGTGATTTCGGCT 57.042 30.769 8.12 0.00 0.00 5.52
899 940 9.391006 TGAATTAGTAATTAGTGATTTCGGCTT 57.609 29.630 8.12 0.00 0.00 4.35
900 941 9.865484 GAATTAGTAATTAGTGATTTCGGCTTC 57.135 33.333 8.12 0.00 0.00 3.86
901 942 9.614792 AATTAGTAATTAGTGATTTCGGCTTCT 57.385 29.630 6.33 0.00 0.00 2.85
902 943 8.644318 TTAGTAATTAGTGATTTCGGCTTCTC 57.356 34.615 2.90 0.00 0.00 2.87
903 944 6.640518 AGTAATTAGTGATTTCGGCTTCTCA 58.359 36.000 0.00 0.00 0.00 3.27
904 945 7.275920 AGTAATTAGTGATTTCGGCTTCTCAT 58.724 34.615 0.00 0.00 0.00 2.90
905 946 7.770897 AGTAATTAGTGATTTCGGCTTCTCATT 59.229 33.333 0.00 0.00 0.00 2.57
906 947 6.610741 ATTAGTGATTTCGGCTTCTCATTC 57.389 37.500 0.00 0.00 0.00 2.67
907 948 3.274288 AGTGATTTCGGCTTCTCATTCC 58.726 45.455 0.00 0.00 0.00 3.01
908 949 3.054802 AGTGATTTCGGCTTCTCATTCCT 60.055 43.478 0.00 0.00 0.00 3.36
909 950 3.311048 GTGATTTCGGCTTCTCATTCCTC 59.689 47.826 0.00 0.00 0.00 3.71
910 951 3.198635 TGATTTCGGCTTCTCATTCCTCT 59.801 43.478 0.00 0.00 0.00 3.69
911 952 2.969628 TTCGGCTTCTCATTCCTCTC 57.030 50.000 0.00 0.00 0.00 3.20
912 953 1.115467 TCGGCTTCTCATTCCTCTCC 58.885 55.000 0.00 0.00 0.00 3.71
913 954 0.826715 CGGCTTCTCATTCCTCTCCA 59.173 55.000 0.00 0.00 0.00 3.86
914 955 1.202510 CGGCTTCTCATTCCTCTCCAG 60.203 57.143 0.00 0.00 0.00 3.86
915 956 1.140652 GGCTTCTCATTCCTCTCCAGG 59.859 57.143 0.00 0.00 42.01 4.45
922 963 4.561155 TCCTCTCCAGGACCCAAC 57.439 61.111 0.00 0.00 44.75 3.77
923 964 1.868810 TCCTCTCCAGGACCCAACT 59.131 57.895 0.00 0.00 44.75 3.16
924 965 0.252284 TCCTCTCCAGGACCCAACTC 60.252 60.000 0.00 0.00 44.75 3.01
925 966 1.268283 CCTCTCCAGGACCCAACTCC 61.268 65.000 0.00 0.00 43.65 3.85
926 967 0.252467 CTCTCCAGGACCCAACTCCT 60.252 60.000 0.00 0.00 41.84 3.69
927 968 0.252284 TCTCCAGGACCCAACTCCTC 60.252 60.000 0.00 0.00 38.77 3.71
928 969 1.229529 TCCAGGACCCAACTCCTCC 60.230 63.158 0.00 0.00 38.77 4.30
929 970 1.538876 CCAGGACCCAACTCCTCCA 60.539 63.158 0.00 0.00 38.77 3.86
930 971 1.133809 CCAGGACCCAACTCCTCCAA 61.134 60.000 0.00 0.00 38.77 3.53
931 972 0.995024 CAGGACCCAACTCCTCCAAT 59.005 55.000 0.00 0.00 38.77 3.16
932 973 1.065126 CAGGACCCAACTCCTCCAATC 60.065 57.143 0.00 0.00 38.77 2.67
933 974 0.256177 GGACCCAACTCCTCCAATCC 59.744 60.000 0.00 0.00 0.00 3.01
934 975 0.107654 GACCCAACTCCTCCAATCCG 60.108 60.000 0.00 0.00 0.00 4.18
935 976 1.224592 CCCAACTCCTCCAATCCGG 59.775 63.158 0.00 0.00 0.00 5.14
936 977 1.452108 CCAACTCCTCCAATCCGGC 60.452 63.158 0.00 0.00 33.14 6.13
937 978 1.452108 CAACTCCTCCAATCCGGCC 60.452 63.158 0.00 0.00 33.14 6.13
938 979 2.680370 AACTCCTCCAATCCGGCCC 61.680 63.158 0.00 0.00 33.14 5.80
939 980 4.241555 CTCCTCCAATCCGGCCCG 62.242 72.222 0.00 0.00 33.14 6.13
940 981 4.789173 TCCTCCAATCCGGCCCGA 62.789 66.667 3.71 0.00 33.14 5.14
941 982 4.547367 CCTCCAATCCGGCCCGAC 62.547 72.222 3.71 0.00 33.14 4.79
942 983 4.547367 CTCCAATCCGGCCCGACC 62.547 72.222 3.71 0.00 33.14 4.79
944 985 4.109675 CCAATCCGGCCCGACCTT 62.110 66.667 3.71 0.00 35.61 3.50
945 986 2.045340 CAATCCGGCCCGACCTTT 60.045 61.111 3.71 0.00 35.61 3.11
946 987 2.112815 CAATCCGGCCCGACCTTTC 61.113 63.158 3.71 0.00 35.61 2.62
947 988 3.339738 AATCCGGCCCGACCTTTCC 62.340 63.158 3.71 0.00 35.61 3.13
949 990 4.468689 CCGGCCCGACCTTTCCTC 62.469 72.222 3.71 0.00 35.61 3.71
950 991 3.391382 CGGCCCGACCTTTCCTCT 61.391 66.667 0.00 0.00 35.61 3.69
951 992 2.585153 GGCCCGACCTTTCCTCTC 59.415 66.667 0.00 0.00 34.51 3.20
952 993 2.585153 GCCCGACCTTTCCTCTCC 59.415 66.667 0.00 0.00 0.00 3.71
953 994 2.291043 GCCCGACCTTTCCTCTCCA 61.291 63.158 0.00 0.00 0.00 3.86
954 995 1.901085 CCCGACCTTTCCTCTCCAG 59.099 63.158 0.00 0.00 0.00 3.86
955 996 1.617947 CCCGACCTTTCCTCTCCAGG 61.618 65.000 0.00 0.00 42.01 4.45
974 1015 0.545548 GACCCAACTCCTCCTCCAGT 60.546 60.000 0.00 0.00 0.00 4.00
994 1035 2.124278 GGCCCAACGGAATCTCCC 60.124 66.667 0.00 0.00 31.13 4.30
1187 1237 4.115199 AGCAACGGCCATCCCTCC 62.115 66.667 2.24 0.00 42.56 4.30
1305 1356 0.033894 TCCCCTAACCAATTTCGGCC 60.034 55.000 0.00 0.00 0.00 6.13
1308 1359 1.381165 CCTAACCAATTTCGGCCCCG 61.381 60.000 0.00 0.00 41.35 5.73
1367 1418 0.886490 AACCCTGTCTTTGCTCGCTG 60.886 55.000 0.00 0.00 0.00 5.18
1400 1451 6.159988 GCCATGTACAGAGAGATATGGTTAC 58.840 44.000 0.33 0.00 37.85 2.50
1401 1452 6.692486 CCATGTACAGAGAGATATGGTTACC 58.308 44.000 0.33 0.00 32.44 2.85
1465 1516 7.438564 TGGGTTTTAATTAGGAGTGCTTTTTC 58.561 34.615 0.00 0.00 0.00 2.29
1476 1527 5.420104 AGGAGTGCTTTTTCATTCCCTATTG 59.580 40.000 2.32 0.00 41.99 1.90
1516 1572 8.433126 ACGACTAACTTCGAATATTTTGTCAAG 58.567 33.333 19.11 11.69 41.78 3.02
1659 1715 2.237143 TCCCTGCACAGAGTGATTTAGG 59.763 50.000 0.58 2.97 35.23 2.69
1701 1757 6.086871 GGGAATTTTCTCGACTTTTAGCTTG 58.913 40.000 0.00 0.00 0.00 4.01
1702 1758 6.294010 GGGAATTTTCTCGACTTTTAGCTTGT 60.294 38.462 0.00 0.00 0.00 3.16
1703 1759 7.094933 GGGAATTTTCTCGACTTTTAGCTTGTA 60.095 37.037 0.00 0.00 0.00 2.41
1704 1760 7.745155 GGAATTTTCTCGACTTTTAGCTTGTAC 59.255 37.037 0.00 0.00 0.00 2.90
1705 1761 7.964604 ATTTTCTCGACTTTTAGCTTGTACT 57.035 32.000 0.00 0.00 0.00 2.73
1706 1762 7.781548 TTTTCTCGACTTTTAGCTTGTACTT 57.218 32.000 0.00 0.00 0.00 2.24
1707 1763 7.404139 TTTCTCGACTTTTAGCTTGTACTTC 57.596 36.000 0.00 0.00 0.00 3.01
1708 1764 5.467705 TCTCGACTTTTAGCTTGTACTTCC 58.532 41.667 0.00 0.00 0.00 3.46
1709 1765 5.243283 TCTCGACTTTTAGCTTGTACTTCCT 59.757 40.000 0.00 0.00 0.00 3.36
1710 1766 5.467705 TCGACTTTTAGCTTGTACTTCCTC 58.532 41.667 0.00 0.00 0.00 3.71
1711 1767 4.626172 CGACTTTTAGCTTGTACTTCCTCC 59.374 45.833 0.00 0.00 0.00 4.30
1712 1768 4.566987 ACTTTTAGCTTGTACTTCCTCCG 58.433 43.478 0.00 0.00 0.00 4.63
1713 1769 4.040095 ACTTTTAGCTTGTACTTCCTCCGT 59.960 41.667 0.00 0.00 0.00 4.69
1714 1770 5.244626 ACTTTTAGCTTGTACTTCCTCCGTA 59.755 40.000 0.00 0.00 0.00 4.02
1715 1771 5.726980 TTTAGCTTGTACTTCCTCCGTAA 57.273 39.130 0.00 0.00 0.00 3.18
1716 1772 5.726980 TTAGCTTGTACTTCCTCCGTAAA 57.273 39.130 0.00 0.00 0.00 2.01
1717 1773 3.922910 AGCTTGTACTTCCTCCGTAAAC 58.077 45.455 0.00 0.00 0.00 2.01
1718 1774 3.577415 AGCTTGTACTTCCTCCGTAAACT 59.423 43.478 0.00 0.00 0.00 2.66
1719 1775 3.678548 GCTTGTACTTCCTCCGTAAACTG 59.321 47.826 0.00 0.00 0.00 3.16
1720 1776 4.560108 GCTTGTACTTCCTCCGTAAACTGA 60.560 45.833 0.00 0.00 0.00 3.41
1721 1777 5.721232 CTTGTACTTCCTCCGTAAACTGAT 58.279 41.667 0.00 0.00 0.00 2.90
1722 1778 6.626623 GCTTGTACTTCCTCCGTAAACTGATA 60.627 42.308 0.00 0.00 0.00 2.15
1723 1779 7.414222 TTGTACTTCCTCCGTAAACTGATAT 57.586 36.000 0.00 0.00 0.00 1.63
1724 1780 8.523915 TTGTACTTCCTCCGTAAACTGATATA 57.476 34.615 0.00 0.00 0.00 0.86
1725 1781 8.523915 TGTACTTCCTCCGTAAACTGATATAA 57.476 34.615 0.00 0.00 0.00 0.98
1726 1782 8.627403 TGTACTTCCTCCGTAAACTGATATAAG 58.373 37.037 0.00 0.00 0.00 1.73
1727 1783 7.893124 ACTTCCTCCGTAAACTGATATAAGA 57.107 36.000 0.00 0.00 0.00 2.10
1728 1784 7.942990 ACTTCCTCCGTAAACTGATATAAGAG 58.057 38.462 0.00 0.00 0.00 2.85
1729 1785 6.328641 TCCTCCGTAAACTGATATAAGAGC 57.671 41.667 0.00 0.00 0.00 4.09
1730 1786 5.048921 TCCTCCGTAAACTGATATAAGAGCG 60.049 44.000 0.00 0.00 0.00 5.03
1731 1787 5.278364 CCTCCGTAAACTGATATAAGAGCGT 60.278 44.000 0.00 0.00 0.00 5.07
1732 1788 6.140303 TCCGTAAACTGATATAAGAGCGTT 57.860 37.500 0.00 0.00 0.00 4.84
1733 1789 6.567050 TCCGTAAACTGATATAAGAGCGTTT 58.433 36.000 0.00 0.00 0.00 3.60
1734 1790 7.706159 TCCGTAAACTGATATAAGAGCGTTTA 58.294 34.615 0.00 0.00 0.00 2.01
1735 1791 7.859377 TCCGTAAACTGATATAAGAGCGTTTAG 59.141 37.037 0.00 0.00 29.54 1.85
1736 1792 7.859377 CCGTAAACTGATATAAGAGCGTTTAGA 59.141 37.037 0.00 0.00 29.54 2.10
1737 1793 9.395707 CGTAAACTGATATAAGAGCGTTTAGAT 57.604 33.333 0.00 0.00 29.54 1.98
1740 1796 8.804688 AACTGATATAAGAGCGTTTAGATCAC 57.195 34.615 13.17 0.00 36.73 3.06
1741 1797 8.172352 ACTGATATAAGAGCGTTTAGATCACT 57.828 34.615 13.17 5.79 36.73 3.41
1742 1798 9.286170 ACTGATATAAGAGCGTTTAGATCACTA 57.714 33.333 13.17 0.00 36.73 2.74
1750 1806 9.654663 AAGAGCGTTTAGATCACTAAAATAGTT 57.345 29.630 0.00 0.00 45.97 2.24
1783 1839 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
1827 1883 3.313526 CCCTGATGCTTTTGTTCTATCCG 59.686 47.826 0.00 0.00 0.00 4.18
1843 1899 4.888239 TCTATCCGTCTCCTAAGGTTTCTG 59.112 45.833 0.00 0.00 0.00 3.02
1914 1970 0.248565 CAGAGGCTGCAGCTTGTCTA 59.751 55.000 35.82 0.00 41.70 2.59
1989 2045 0.877649 CATCGCTCCATCTTGGACGG 60.878 60.000 14.21 2.29 42.67 4.79
2096 2152 4.019174 CCATCCACTTATTTCTGCCAACT 58.981 43.478 0.00 0.00 0.00 3.16
2101 2157 5.415701 TCCACTTATTTCTGCCAACTGATTC 59.584 40.000 0.00 0.00 0.00 2.52
2175 2231 7.487822 TTTGAGATCAGAAGTTGATAGGTCT 57.512 36.000 0.00 0.00 46.51 3.85
2209 2265 4.717877 TGGCATAATCATCGTGGATTCTT 58.282 39.130 7.41 0.00 38.41 2.52
2240 2296 2.770164 AAGGTGATGGCAGTACTGTC 57.230 50.000 20.72 20.72 35.37 3.51
2316 2372 1.929836 GAAGATAGAAGCAGCACCGTG 59.070 52.381 0.00 0.00 0.00 4.94
2405 2474 2.025887 CCTCCCTGTGCTATGGTTTTCT 60.026 50.000 0.00 0.00 0.00 2.52
2544 2615 4.778534 ATGAAGTGGATTCTGCAACTTG 57.221 40.909 4.00 0.00 38.83 3.16
2783 2856 9.653287 TCTCTAAGTATTGTTGTTGGTTAGATG 57.347 33.333 0.00 0.00 0.00 2.90
2881 2954 6.845758 AATTGATGTGATTCATGACTGGTT 57.154 33.333 0.00 0.00 36.83 3.67
2882 2955 5.885230 TTGATGTGATTCATGACTGGTTC 57.115 39.130 0.00 0.00 36.83 3.62
2988 3064 8.902540 TCAAACGGTATCTAGCATTGAAATAT 57.097 30.769 0.00 0.00 31.01 1.28
3040 3116 5.730296 AATATGAATCGGAGGGAGTACAG 57.270 43.478 0.00 0.00 0.00 2.74
3170 3249 8.484214 AAGTATCCTATTGAAGAGAGTGCATA 57.516 34.615 0.00 0.00 0.00 3.14
3202 3281 1.269569 GGCCAGTTTACTGCGCTTTTT 60.270 47.619 9.73 0.00 42.47 1.94
3384 3463 6.479884 AGATATTTCTCTTGTGGCTCTTGTT 58.520 36.000 0.00 0.00 0.00 2.83
3449 3534 2.535574 GCTGCACAGTTACTTTGTTTGC 59.464 45.455 0.37 0.00 0.00 3.68
3589 3692 4.675976 TTGTCTCCTTCAGTTTACCGAA 57.324 40.909 0.00 0.00 0.00 4.30
3602 3705 2.568090 CCGAACAGGTGCCATTGC 59.432 61.111 0.00 0.00 38.26 3.56
3603 3706 1.973281 CCGAACAGGTGCCATTGCT 60.973 57.895 0.00 0.00 38.71 3.91
3664 3767 1.661341 CAAGGAGATTTGAGAGGCCG 58.339 55.000 0.00 0.00 0.00 6.13
3723 3826 7.400339 TGAATTGTTTCCATCTAGAGGTAGTCT 59.600 37.037 3.36 0.00 39.59 3.24
3724 3827 6.777213 TTGTTTCCATCTAGAGGTAGTCTC 57.223 41.667 3.36 0.00 42.75 3.36
4030 4328 5.243730 CCAGGCTTCTTTTCACAATCCTTTA 59.756 40.000 0.00 0.00 0.00 1.85
4080 4378 5.652452 AGAATTAGTACCACCCAAGAAATGC 59.348 40.000 0.00 0.00 0.00 3.56
4093 4391 5.297776 CCCAAGAAATGCTCACTATACTTGG 59.702 44.000 0.15 0.15 46.94 3.61
4156 4454 7.456725 ACTCATTATCCCATTTGATCGATCTT 58.543 34.615 25.02 8.41 0.00 2.40
4157 4455 7.389884 ACTCATTATCCCATTTGATCGATCTTG 59.610 37.037 25.02 18.32 0.00 3.02
4344 4650 8.628882 TTTGTATACATCATTGACTGACTACG 57.371 34.615 6.36 0.00 36.48 3.51
4623 4936 7.502696 TGTTTTCCTAGACAAGCACTAAACTA 58.497 34.615 0.00 0.00 0.00 2.24
4624 4937 7.440255 TGTTTTCCTAGACAAGCACTAAACTAC 59.560 37.037 0.00 0.00 0.00 2.73
4625 4938 6.912951 TTCCTAGACAAGCACTAAACTACT 57.087 37.500 0.00 0.00 0.00 2.57
4626 4939 6.512342 TCCTAGACAAGCACTAAACTACTC 57.488 41.667 0.00 0.00 0.00 2.59
4627 4940 5.418209 TCCTAGACAAGCACTAAACTACTCC 59.582 44.000 0.00 0.00 0.00 3.85
4628 4941 4.538746 AGACAAGCACTAAACTACTCCC 57.461 45.455 0.00 0.00 0.00 4.30
4629 4942 4.161102 AGACAAGCACTAAACTACTCCCT 58.839 43.478 0.00 0.00 0.00 4.20
4630 4943 4.221041 AGACAAGCACTAAACTACTCCCTC 59.779 45.833 0.00 0.00 0.00 4.30
4631 4944 3.261137 ACAAGCACTAAACTACTCCCTCC 59.739 47.826 0.00 0.00 0.00 4.30
4632 4945 2.100989 AGCACTAAACTACTCCCTCCG 58.899 52.381 0.00 0.00 0.00 4.63
4633 4946 1.823610 GCACTAAACTACTCCCTCCGT 59.176 52.381 0.00 0.00 0.00 4.69
4634 4947 2.159268 GCACTAAACTACTCCCTCCGTC 60.159 54.545 0.00 0.00 0.00 4.79
4635 4948 2.426381 CACTAAACTACTCCCTCCGTCC 59.574 54.545 0.00 0.00 0.00 4.79
4636 4949 2.030371 CTAAACTACTCCCTCCGTCCC 58.970 57.143 0.00 0.00 0.00 4.46
4637 4950 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
4638 4951 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
4639 4952 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
4640 4953 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
4641 4954 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
4642 4955 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
4643 4956 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4644 4957 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4645 4958 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4646 4959 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4647 4960 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4648 4961 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
4649 4962 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
4650 4963 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
4651 4964 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
4652 4965 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
4653 4966 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
4654 4967 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
4655 4968 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
4681 4994 7.934855 ACACTAGTAGTATATTATGGGACGG 57.065 40.000 1.57 0.00 0.00 4.79
4682 4995 7.693132 ACACTAGTAGTATATTATGGGACGGA 58.307 38.462 1.57 0.00 0.00 4.69
4683 4996 7.828223 ACACTAGTAGTATATTATGGGACGGAG 59.172 40.741 1.57 0.00 0.00 4.63
4684 4997 7.282675 CACTAGTAGTATATTATGGGACGGAGG 59.717 44.444 1.57 0.00 0.00 4.30
4685 4998 5.516984 AGTAGTATATTATGGGACGGAGGG 58.483 45.833 0.00 0.00 0.00 4.30
4686 4999 4.687262 AGTATATTATGGGACGGAGGGA 57.313 45.455 0.00 0.00 0.00 4.20
4687 5000 4.611367 AGTATATTATGGGACGGAGGGAG 58.389 47.826 0.00 0.00 0.00 4.30
4688 5001 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4693 5006 0.928505 TGGGACGGAGGGAGTATGTA 59.071 55.000 0.00 0.00 0.00 2.29
4757 5070 0.394565 AAGCGAGCTGGTTTGTCTCT 59.605 50.000 0.00 0.00 33.66 3.10
4758 5071 0.394565 AGCGAGCTGGTTTGTCTCTT 59.605 50.000 0.00 0.00 0.00 2.85
4768 5081 2.095364 GGTTTGTCTCTTCATGCAGCTG 60.095 50.000 10.11 10.11 0.00 4.24
4814 5127 4.385748 CGGTGCCTAAAAGAAATTTTGCTC 59.614 41.667 0.00 0.00 32.08 4.26
4830 5143 0.737219 GCTCGCTCCAAATGCAGAAT 59.263 50.000 0.00 0.00 0.00 2.40
4994 5307 4.760204 GTGTATTTCCAACCTGCAGTACTT 59.240 41.667 13.81 0.00 0.00 2.24
5006 5319 5.882557 ACCTGCAGTACTTTTCCATTCATAG 59.117 40.000 13.81 0.00 0.00 2.23
5071 5384 0.395448 AGGTACGGACTACTGAGGGC 60.395 60.000 0.00 0.00 0.00 5.19
5157 5470 1.737793 GTCCCAGGAAATGTAGCAACG 59.262 52.381 0.00 0.00 0.00 4.10
5332 5647 8.840321 TGCAATATTCTCTTAGCAAATTACTCC 58.160 33.333 0.00 0.00 0.00 3.85
5333 5648 8.293157 GCAATATTCTCTTAGCAAATTACTCCC 58.707 37.037 0.00 0.00 0.00 4.30
5334 5649 9.566432 CAATATTCTCTTAGCAAATTACTCCCT 57.434 33.333 0.00 0.00 0.00 4.20
5336 5651 9.785982 ATATTCTCTTAGCAAATTACTCCCTTC 57.214 33.333 0.00 0.00 0.00 3.46
5337 5652 5.661458 TCTCTTAGCAAATTACTCCCTTCG 58.339 41.667 0.00 0.00 0.00 3.79
5338 5653 5.187186 TCTCTTAGCAAATTACTCCCTTCGT 59.813 40.000 0.00 0.00 0.00 3.85
5339 5654 5.801380 TCTTAGCAAATTACTCCCTTCGTT 58.199 37.500 0.00 0.00 0.00 3.85
5340 5655 5.873164 TCTTAGCAAATTACTCCCTTCGTTC 59.127 40.000 0.00 0.00 0.00 3.95
5341 5656 3.344515 AGCAAATTACTCCCTTCGTTCC 58.655 45.455 0.00 0.00 0.00 3.62
5342 5657 3.009143 AGCAAATTACTCCCTTCGTTCCT 59.991 43.478 0.00 0.00 0.00 3.36
5343 5658 4.224370 AGCAAATTACTCCCTTCGTTCCTA 59.776 41.667 0.00 0.00 0.00 2.94
5344 5659 4.939439 GCAAATTACTCCCTTCGTTCCTAA 59.061 41.667 0.00 0.00 0.00 2.69
5345 5660 5.413523 GCAAATTACTCCCTTCGTTCCTAAA 59.586 40.000 0.00 0.00 0.00 1.85
5346 5661 6.095021 GCAAATTACTCCCTTCGTTCCTAAAT 59.905 38.462 0.00 0.00 0.00 1.40
5347 5662 7.281549 GCAAATTACTCCCTTCGTTCCTAAATA 59.718 37.037 0.00 0.00 0.00 1.40
5348 5663 9.338622 CAAATTACTCCCTTCGTTCCTAAATAT 57.661 33.333 0.00 0.00 0.00 1.28
5352 5667 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
5353 5668 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
5354 5669 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
5355 5670 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
5356 5671 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
5357 5672 9.392259 CCCTTCGTTCCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
5373 5688 6.428385 AGTCTTTTTAGAGATTCCAATGCG 57.572 37.500 0.00 0.00 0.00 4.73
5374 5689 5.355350 AGTCTTTTTAGAGATTCCAATGCGG 59.645 40.000 0.00 0.00 0.00 5.69
5375 5690 5.354234 GTCTTTTTAGAGATTCCAATGCGGA 59.646 40.000 0.00 0.00 44.40 5.54
5376 5691 5.354234 TCTTTTTAGAGATTCCAATGCGGAC 59.646 40.000 0.00 0.00 46.36 4.79
5377 5692 4.487714 TTTAGAGATTCCAATGCGGACT 57.512 40.909 0.00 0.00 46.36 3.85
5378 5693 5.607939 TTTAGAGATTCCAATGCGGACTA 57.392 39.130 0.00 0.00 46.36 2.59
5379 5694 3.460857 AGAGATTCCAATGCGGACTAC 57.539 47.619 0.00 0.00 46.36 2.73
5380 5695 2.766263 AGAGATTCCAATGCGGACTACA 59.234 45.455 0.00 0.00 46.36 2.74
5381 5696 3.389329 AGAGATTCCAATGCGGACTACAT 59.611 43.478 0.00 0.00 46.36 2.29
5382 5697 4.588951 AGAGATTCCAATGCGGACTACATA 59.411 41.667 0.00 0.00 46.36 2.29
5383 5698 4.632153 AGATTCCAATGCGGACTACATAC 58.368 43.478 0.00 0.00 46.36 2.39
5384 5699 2.502213 TCCAATGCGGACTACATACG 57.498 50.000 0.00 0.00 39.64 3.06
5385 5700 1.067974 TCCAATGCGGACTACATACGG 59.932 52.381 0.00 0.00 39.64 4.02
5386 5701 1.067974 CCAATGCGGACTACATACGGA 59.932 52.381 0.00 0.00 36.56 4.69
5387 5702 2.394708 CAATGCGGACTACATACGGAG 58.605 52.381 0.00 0.00 0.00 4.63
5388 5703 5.351210 CCAATGCGGACTACATACGGAGT 62.351 52.174 0.00 0.00 41.15 3.85
5389 5704 6.048344 CCAATGCGGACTACATACGGAGTA 62.048 50.000 0.00 0.00 43.12 2.59
5390 5705 7.452559 CCAATGCGGACTACATACGGAGTAA 62.453 48.000 0.00 0.00 42.38 2.24
5391 5706 8.826241 CCAATGCGGACTACATACGGAGTAAA 62.826 46.154 0.00 0.00 42.38 2.01
5405 5720 6.963049 ACGGAGTAAAATGTGTGAATCTAC 57.037 37.500 0.00 0.00 41.94 2.59
5406 5721 6.460781 ACGGAGTAAAATGTGTGAATCTACA 58.539 36.000 0.00 0.00 41.94 2.74
5407 5722 6.367969 ACGGAGTAAAATGTGTGAATCTACAC 59.632 38.462 8.36 8.36 45.53 2.90
5408 5723 7.740027 ACGGAGTAAAATGTGTGAATCTACACT 60.740 37.037 13.88 0.00 45.53 3.55
5449 5764 6.971726 ACATCCGTATGTAGTCCTTATTGA 57.028 37.500 0.00 0.00 44.66 2.57
5450 5765 7.356089 ACATCCGTATGTAGTCCTTATTGAA 57.644 36.000 0.00 0.00 44.66 2.69
5451 5766 7.788026 ACATCCGTATGTAGTCCTTATTGAAA 58.212 34.615 0.00 0.00 44.66 2.69
5452 5767 8.429641 ACATCCGTATGTAGTCCTTATTGAAAT 58.570 33.333 0.00 0.00 44.66 2.17
5453 5768 8.926710 CATCCGTATGTAGTCCTTATTGAAATC 58.073 37.037 0.00 0.00 0.00 2.17
5454 5769 8.246430 TCCGTATGTAGTCCTTATTGAAATCT 57.754 34.615 0.00 0.00 0.00 2.40
5455 5770 8.358148 TCCGTATGTAGTCCTTATTGAAATCTC 58.642 37.037 0.00 0.00 0.00 2.75
5456 5771 8.361139 CCGTATGTAGTCCTTATTGAAATCTCT 58.639 37.037 0.00 0.00 0.00 3.10
5478 5793 9.810870 TCTCTAAAAGGACTTATATACTCCCTC 57.189 37.037 3.00 0.00 0.00 4.30
5479 5794 8.953223 TCTAAAAGGACTTATATACTCCCTCC 57.047 38.462 3.00 0.00 0.00 4.30
5480 5795 6.667558 AAAAGGACTTATATACTCCCTCCG 57.332 41.667 3.00 0.00 0.00 4.63
5481 5796 5.336491 AAGGACTTATATACTCCCTCCGT 57.664 43.478 3.00 0.00 0.00 4.69
5482 5797 6.460103 AAGGACTTATATACTCCCTCCGTA 57.540 41.667 3.00 0.00 0.00 4.02
5483 5798 6.460103 AGGACTTATATACTCCCTCCGTAA 57.540 41.667 3.00 0.00 0.00 3.18
5484 5799 6.856757 AGGACTTATATACTCCCTCCGTAAA 58.143 40.000 3.00 0.00 0.00 2.01
5485 5800 6.718912 AGGACTTATATACTCCCTCCGTAAAC 59.281 42.308 3.00 0.00 0.00 2.01
5486 5801 6.718912 GGACTTATATACTCCCTCCGTAAACT 59.281 42.308 0.00 0.00 0.00 2.66
5487 5802 7.885399 GGACTTATATACTCCCTCCGTAAACTA 59.115 40.741 0.00 0.00 0.00 2.24
5488 5803 9.289782 GACTTATATACTCCCTCCGTAAACTAA 57.710 37.037 0.00 0.00 0.00 2.24
5489 5804 9.819754 ACTTATATACTCCCTCCGTAAACTAAT 57.180 33.333 0.00 0.00 0.00 1.73
5496 5811 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
5497 5812 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
5498 5813 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
5499 5814 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
5500 5815 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
5501 5816 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
5553 5868 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
5554 5869 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
5571 5886 6.438741 CAGAGGGAGTATATTATTGCAGGAGA 59.561 42.308 0.00 0.00 0.00 3.71
5618 5943 1.065102 GCATCTGTAGGCATGCACAAG 59.935 52.381 21.36 11.01 44.18 3.16
5627 5952 2.162681 GGCATGCACAAGTTCCTAGTT 58.837 47.619 21.36 0.00 0.00 2.24
5628 5953 2.162408 GGCATGCACAAGTTCCTAGTTC 59.838 50.000 21.36 0.00 0.00 3.01
5640 5965 8.877195 ACAAGTTCCTAGTTCAGAATAACCTTA 58.123 33.333 0.00 0.00 0.00 2.69
5664 5989 5.486526 TGATATCATACATGCCATGCGTTA 58.513 37.500 4.17 0.00 0.00 3.18
6096 6421 1.290009 GGACAAAATGCAGGCGCTT 59.710 52.632 7.64 0.00 39.64 4.68
6126 6451 1.421346 CCCCTGCCATGCTCCTCATA 61.421 60.000 0.00 0.00 33.19 2.15
6177 6502 0.606130 TTTGCCTCGCATGAGCTTCA 60.606 50.000 0.00 0.00 41.13 3.02
6191 6516 4.065088 TGAGCTTCACCACAAGTATTCAC 58.935 43.478 0.00 0.00 0.00 3.18
6194 6519 4.516698 AGCTTCACCACAAGTATTCACAAG 59.483 41.667 0.00 0.00 0.00 3.16
6296 6621 9.936759 ACACAATTTGGAAATATTTACCGAATT 57.063 25.926 23.07 23.07 44.01 2.17
6353 6678 4.989279 TGAAAAATGGCTCCAGATTAGC 57.011 40.909 0.00 0.00 39.33 3.09
6386 6711 7.093727 TGTTCTGCTATAATATCCTCAGCTACC 60.094 40.741 0.00 0.00 33.38 3.18
6477 6805 9.554724 GATTATGTCGTGCAGAAAAGATAAAAA 57.445 29.630 0.00 0.00 31.56 1.94
6534 6864 6.628644 ATTAGGAGAAGCTCTGGTTTTAGT 57.371 37.500 0.00 0.00 0.00 2.24
6657 7000 5.239525 GTCTAAACCACAGAACAAGAAGCAT 59.760 40.000 0.00 0.00 0.00 3.79
6726 7097 7.889589 TCGAATATATCACAAGCATCGAAAT 57.110 32.000 0.00 0.00 35.42 2.17
6783 7155 7.494952 ACCTATATCCTTTTGCTACTCGAAAAC 59.505 37.037 0.00 0.00 0.00 2.43
6784 7156 7.711339 CCTATATCCTTTTGCTACTCGAAAACT 59.289 37.037 0.00 0.00 0.00 2.66
6788 7160 6.859017 TCCTTTTGCTACTCGAAAACTTTTT 58.141 32.000 0.00 0.00 0.00 1.94
6827 7200 5.297547 ACTGCTACATGGAAATATACCACG 58.702 41.667 0.00 0.00 40.36 4.94
6832 7205 4.380531 ACATGGAAATATACCACGAGCAG 58.619 43.478 0.00 0.00 40.36 4.24
6836 7209 4.161565 TGGAAATATACCACGAGCAGTTCT 59.838 41.667 0.00 0.00 32.03 3.01
6896 7269 1.032014 CCAACTTGTTCACCCACAGG 58.968 55.000 0.00 0.00 40.04 4.00
6898 7271 0.033601 AACTTGTTCACCCACAGGCA 60.034 50.000 0.00 0.00 36.11 4.75
6910 7283 1.351017 CCACAGGCAGGGTTTTCTCTA 59.649 52.381 0.00 0.00 0.00 2.43
6945 7318 1.204704 TCTTTGTCGTCATCATCGGCT 59.795 47.619 0.00 0.00 33.90 5.52
6997 7370 2.028203 TCATCATCGACTCCTGCAAACA 60.028 45.455 0.00 0.00 0.00 2.83
7053 7428 1.074951 AAACGGGAAGCAAGGAGGG 59.925 57.895 0.00 0.00 0.00 4.30
7149 7524 0.323178 CCATCCAGTTTGGCTGCTCT 60.323 55.000 0.00 0.00 43.71 4.09
7152 7527 1.602888 CCAGTTTGGCTGCTCTGCT 60.603 57.895 0.00 0.00 43.71 4.24
7158 7533 4.792804 GGCTGCTCTGCTGGTCCC 62.793 72.222 0.00 0.00 0.00 4.46
7170 7545 2.432628 GGTCCCGAGAACAGTGCG 60.433 66.667 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 47 5.040635 GCGAAAGAAAAACCATGACTTTCA 58.959 37.500 1.74 0.00 43.38 2.69
48 56 1.871039 CCTCTCGCGAAAGAAAAACCA 59.129 47.619 11.91 0.00 0.00 3.67
149 163 2.599848 CGAAAGCAAAACCGTGACTCTG 60.600 50.000 0.00 0.00 0.00 3.35
258 274 1.056660 ACTCCGTGACTCCCACAAAT 58.943 50.000 0.00 0.00 45.98 2.32
261 277 1.745890 CAACTCCGTGACTCCCACA 59.254 57.895 0.00 0.00 45.98 4.17
265 281 0.670854 GGAAGCAACTCCGTGACTCC 60.671 60.000 0.00 0.00 0.00 3.85
470 499 1.888215 ACCGTGACTCTCGTGTAAGA 58.112 50.000 0.24 0.00 0.00 2.10
625 660 5.179368 TCATTGGATTCTTCACGTCAAGAAC 59.821 40.000 17.22 10.68 43.57 3.01
626 661 5.304778 TCATTGGATTCTTCACGTCAAGAA 58.695 37.500 17.19 17.19 44.59 2.52
633 668 6.032094 CCTTTTCATCATTGGATTCTTCACG 58.968 40.000 0.00 0.00 0.00 4.35
635 670 6.018469 ACCCTTTTCATCATTGGATTCTTCA 58.982 36.000 0.00 0.00 0.00 3.02
637 672 6.350445 CGAACCCTTTTCATCATTGGATTCTT 60.350 38.462 0.00 0.00 0.00 2.52
638 673 5.126061 CGAACCCTTTTCATCATTGGATTCT 59.874 40.000 0.00 0.00 0.00 2.40
649 684 4.459337 GTCCAAATCTCGAACCCTTTTCAT 59.541 41.667 0.00 0.00 0.00 2.57
656 691 0.672401 TGCGTCCAAATCTCGAACCC 60.672 55.000 0.00 0.00 0.00 4.11
717 758 2.553086 TGTCGTAACCTGCGAGTTTTT 58.447 42.857 0.00 0.00 39.14 1.94
723 764 0.669619 TCACTTGTCGTAACCTGCGA 59.330 50.000 0.00 0.00 35.89 5.10
724 765 0.782384 GTCACTTGTCGTAACCTGCG 59.218 55.000 0.00 0.00 0.00 5.18
725 766 0.782384 CGTCACTTGTCGTAACCTGC 59.218 55.000 0.00 0.00 0.00 4.85
732 773 3.030308 CAGCGCGTCACTTGTCGT 61.030 61.111 8.43 0.00 0.00 4.34
746 787 4.047059 AAGTGGCGCACATGCAGC 62.047 61.111 10.83 8.22 42.21 5.25
768 809 1.202651 ACACTCCACTTTCCCAAGTCG 60.203 52.381 0.00 0.00 41.69 4.18
772 813 3.287222 CTCAAACACTCCACTTTCCCAA 58.713 45.455 0.00 0.00 0.00 4.12
790 831 9.817809 CATTGCTTACTAATTAAGGAGTACTCA 57.182 33.333 23.91 4.10 39.14 3.41
792 833 9.819267 GTCATTGCTTACTAATTAAGGAGTACT 57.181 33.333 0.00 0.00 39.14 2.73
793 834 9.595823 TGTCATTGCTTACTAATTAAGGAGTAC 57.404 33.333 0.00 0.00 39.14 2.73
797 838 9.778741 CCTATGTCATTGCTTACTAATTAAGGA 57.221 33.333 0.00 0.00 38.15 3.36
798 839 9.778741 TCCTATGTCATTGCTTACTAATTAAGG 57.221 33.333 0.00 0.00 38.15 2.69
803 844 9.988815 CTAAGTCCTATGTCATTGCTTACTAAT 57.011 33.333 0.00 0.00 0.00 1.73
804 845 9.197306 TCTAAGTCCTATGTCATTGCTTACTAA 57.803 33.333 0.00 0.00 0.00 2.24
805 846 8.762481 TCTAAGTCCTATGTCATTGCTTACTA 57.238 34.615 0.00 0.00 0.00 1.82
806 847 7.661536 TCTAAGTCCTATGTCATTGCTTACT 57.338 36.000 0.00 0.00 0.00 2.24
809 850 7.605691 GCATATCTAAGTCCTATGTCATTGCTT 59.394 37.037 0.00 0.00 0.00 3.91
810 851 7.102346 GCATATCTAAGTCCTATGTCATTGCT 58.898 38.462 0.00 0.00 0.00 3.91
811 852 6.875726 TGCATATCTAAGTCCTATGTCATTGC 59.124 38.462 0.00 0.00 0.00 3.56
812 853 8.837788 TTGCATATCTAAGTCCTATGTCATTG 57.162 34.615 0.00 0.00 0.00 2.82
815 856 9.314133 AGTATTGCATATCTAAGTCCTATGTCA 57.686 33.333 0.00 0.00 0.00 3.58
821 862 8.043710 GCCATAAGTATTGCATATCTAAGTCCT 58.956 37.037 0.00 0.00 0.00 3.85
822 863 7.824289 TGCCATAAGTATTGCATATCTAAGTCC 59.176 37.037 0.00 0.00 30.49 3.85
823 864 8.660373 GTGCCATAAGTATTGCATATCTAAGTC 58.340 37.037 0.92 0.00 36.83 3.01
824 865 8.156820 TGTGCCATAAGTATTGCATATCTAAGT 58.843 33.333 0.92 0.00 36.83 2.24
825 866 8.552083 TGTGCCATAAGTATTGCATATCTAAG 57.448 34.615 0.92 0.00 36.83 2.18
826 867 9.166173 GATGTGCCATAAGTATTGCATATCTAA 57.834 33.333 18.74 0.00 43.34 2.10
827 868 8.722480 GATGTGCCATAAGTATTGCATATCTA 57.278 34.615 18.74 1.53 43.34 1.98
828 869 7.621428 GATGTGCCATAAGTATTGCATATCT 57.379 36.000 18.74 0.00 43.34 1.98
829 870 7.621428 AGATGTGCCATAAGTATTGCATATC 57.379 36.000 18.53 18.53 45.14 1.63
830 871 8.542926 TCTAGATGTGCCATAAGTATTGCATAT 58.457 33.333 6.39 6.39 38.33 1.78
831 872 7.906327 TCTAGATGTGCCATAAGTATTGCATA 58.094 34.615 0.92 0.00 36.83 3.14
832 873 6.772605 TCTAGATGTGCCATAAGTATTGCAT 58.227 36.000 0.92 0.00 36.83 3.96
833 874 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
834 875 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
855 896 7.809806 ACTAATTCAGTTTTGCTAAAGCACATC 59.190 33.333 3.66 0.00 42.69 3.06
856 897 7.661040 ACTAATTCAGTTTTGCTAAAGCACAT 58.339 30.769 3.66 0.00 42.69 3.21
857 898 7.038154 ACTAATTCAGTTTTGCTAAAGCACA 57.962 32.000 3.66 0.00 42.69 4.57
858 899 9.626045 ATTACTAATTCAGTTTTGCTAAAGCAC 57.374 29.630 3.66 0.00 44.05 4.40
871 912 8.827677 GCCGAAATCACTAATTACTAATTCAGT 58.172 33.333 0.00 0.00 41.62 3.41
872 913 9.046296 AGCCGAAATCACTAATTACTAATTCAG 57.954 33.333 0.00 0.00 32.38 3.02
873 914 8.958119 AGCCGAAATCACTAATTACTAATTCA 57.042 30.769 0.00 0.00 32.38 2.57
874 915 9.865484 GAAGCCGAAATCACTAATTACTAATTC 57.135 33.333 0.00 0.00 32.38 2.17
875 916 9.614792 AGAAGCCGAAATCACTAATTACTAATT 57.385 29.630 0.00 0.00 34.90 1.40
876 917 9.262358 GAGAAGCCGAAATCACTAATTACTAAT 57.738 33.333 0.00 0.00 0.00 1.73
877 918 8.255206 TGAGAAGCCGAAATCACTAATTACTAA 58.745 33.333 0.00 0.00 0.00 2.24
878 919 7.778083 TGAGAAGCCGAAATCACTAATTACTA 58.222 34.615 0.00 0.00 0.00 1.82
879 920 6.640518 TGAGAAGCCGAAATCACTAATTACT 58.359 36.000 0.00 0.00 0.00 2.24
880 921 6.903883 TGAGAAGCCGAAATCACTAATTAC 57.096 37.500 0.00 0.00 0.00 1.89
881 922 7.226720 GGAATGAGAAGCCGAAATCACTAATTA 59.773 37.037 0.00 0.00 0.00 1.40
882 923 6.038714 GGAATGAGAAGCCGAAATCACTAATT 59.961 38.462 0.00 0.00 0.00 1.40
883 924 5.529060 GGAATGAGAAGCCGAAATCACTAAT 59.471 40.000 0.00 0.00 0.00 1.73
884 925 4.876107 GGAATGAGAAGCCGAAATCACTAA 59.124 41.667 0.00 0.00 0.00 2.24
885 926 4.162320 AGGAATGAGAAGCCGAAATCACTA 59.838 41.667 0.00 0.00 0.00 2.74
886 927 3.054802 AGGAATGAGAAGCCGAAATCACT 60.055 43.478 0.00 0.00 0.00 3.41
887 928 3.274288 AGGAATGAGAAGCCGAAATCAC 58.726 45.455 0.00 0.00 0.00 3.06
888 929 3.198635 AGAGGAATGAGAAGCCGAAATCA 59.801 43.478 0.00 0.00 0.00 2.57
889 930 3.802866 AGAGGAATGAGAAGCCGAAATC 58.197 45.455 0.00 0.00 0.00 2.17
890 931 3.432890 GGAGAGGAATGAGAAGCCGAAAT 60.433 47.826 0.00 0.00 0.00 2.17
891 932 2.093447 GGAGAGGAATGAGAAGCCGAAA 60.093 50.000 0.00 0.00 0.00 3.46
892 933 1.482593 GGAGAGGAATGAGAAGCCGAA 59.517 52.381 0.00 0.00 0.00 4.30
893 934 1.115467 GGAGAGGAATGAGAAGCCGA 58.885 55.000 0.00 0.00 0.00 5.54
894 935 0.826715 TGGAGAGGAATGAGAAGCCG 59.173 55.000 0.00 0.00 0.00 5.52
895 936 1.140652 CCTGGAGAGGAATGAGAAGCC 59.859 57.143 0.00 0.00 42.93 4.35
896 937 2.114616 TCCTGGAGAGGAATGAGAAGC 58.885 52.381 0.00 0.00 46.19 3.86
906 947 1.268283 GGAGTTGGGTCCTGGAGAGG 61.268 65.000 0.00 0.00 41.39 3.69
907 948 0.252467 AGGAGTTGGGTCCTGGAGAG 60.252 60.000 0.00 0.00 45.91 3.20
908 949 1.868810 AGGAGTTGGGTCCTGGAGA 59.131 57.895 0.00 0.00 45.91 3.71
909 950 4.569214 AGGAGTTGGGTCCTGGAG 57.431 61.111 0.00 0.00 45.91 3.86
914 955 0.256177 GGATTGGAGGAGTTGGGTCC 59.744 60.000 0.00 0.00 36.79 4.46
915 956 0.107654 CGGATTGGAGGAGTTGGGTC 60.108 60.000 0.00 0.00 0.00 4.46
916 957 1.562672 CCGGATTGGAGGAGTTGGGT 61.563 60.000 0.00 0.00 42.00 4.51
917 958 1.224592 CCGGATTGGAGGAGTTGGG 59.775 63.158 0.00 0.00 42.00 4.12
918 959 1.452108 GCCGGATTGGAGGAGTTGG 60.452 63.158 5.05 0.00 42.00 3.77
919 960 1.452108 GGCCGGATTGGAGGAGTTG 60.452 63.158 5.05 0.00 42.00 3.16
920 961 2.680370 GGGCCGGATTGGAGGAGTT 61.680 63.158 5.05 0.00 42.00 3.01
921 962 3.090532 GGGCCGGATTGGAGGAGT 61.091 66.667 5.05 0.00 42.00 3.85
922 963 4.241555 CGGGCCGGATTGGAGGAG 62.242 72.222 20.56 0.00 42.00 3.69
923 964 4.789173 TCGGGCCGGATTGGAGGA 62.789 66.667 27.98 0.00 42.00 3.71
924 965 4.547367 GTCGGGCCGGATTGGAGG 62.547 72.222 27.98 0.00 42.00 4.30
925 966 4.547367 GGTCGGGCCGGATTGGAG 62.547 72.222 27.98 0.00 42.00 3.86
927 968 3.638592 AAAGGTCGGGCCGGATTGG 62.639 63.158 27.98 0.00 43.70 3.16
928 969 2.045340 AAAGGTCGGGCCGGATTG 60.045 61.111 27.98 0.00 43.70 2.67
929 970 2.271173 GAAAGGTCGGGCCGGATT 59.729 61.111 27.98 15.38 43.70 3.01
930 971 3.793888 GGAAAGGTCGGGCCGGAT 61.794 66.667 27.98 9.53 43.70 4.18
932 973 4.468689 GAGGAAAGGTCGGGCCGG 62.469 72.222 27.98 7.65 43.70 6.13
933 974 3.372554 GAGAGGAAAGGTCGGGCCG 62.373 68.421 22.51 22.51 43.70 6.13
934 975 2.585153 GAGAGGAAAGGTCGGGCC 59.415 66.667 0.00 0.00 37.58 5.80
935 976 2.245438 CTGGAGAGGAAAGGTCGGGC 62.245 65.000 0.00 0.00 0.00 6.13
936 977 1.617947 CCTGGAGAGGAAAGGTCGGG 61.618 65.000 0.00 0.00 42.93 5.14
937 978 0.614979 TCCTGGAGAGGAAAGGTCGG 60.615 60.000 0.00 0.00 46.19 4.79
938 979 2.977578 TCCTGGAGAGGAAAGGTCG 58.022 57.895 0.00 0.00 46.19 4.79
946 987 1.268283 GGAGTTGGGTCCTGGAGAGG 61.268 65.000 0.00 0.00 41.39 3.69
947 988 0.252467 AGGAGTTGGGTCCTGGAGAG 60.252 60.000 0.00 0.00 45.91 3.20
948 989 1.868810 AGGAGTTGGGTCCTGGAGA 59.131 57.895 0.00 0.00 45.91 3.71
949 990 4.569214 AGGAGTTGGGTCCTGGAG 57.431 61.111 0.00 0.00 45.91 3.86
954 995 1.229529 TGGAGGAGGAGTTGGGTCC 60.230 63.158 0.00 0.00 36.79 4.46
955 996 0.545548 ACTGGAGGAGGAGTTGGGTC 60.546 60.000 0.00 0.00 0.00 4.46
956 997 0.545548 GACTGGAGGAGGAGTTGGGT 60.546 60.000 0.00 0.00 0.00 4.51
957 998 1.268283 GGACTGGAGGAGGAGTTGGG 61.268 65.000 0.00 0.00 0.00 4.12
958 999 1.608717 CGGACTGGAGGAGGAGTTGG 61.609 65.000 0.00 0.00 0.00 3.77
959 1000 1.608717 CCGGACTGGAGGAGGAGTTG 61.609 65.000 0.00 0.00 42.00 3.16
960 1001 1.305381 CCGGACTGGAGGAGGAGTT 60.305 63.158 0.00 0.00 42.00 3.01
961 1002 2.360980 CCGGACTGGAGGAGGAGT 59.639 66.667 0.00 0.00 42.00 3.85
994 1035 4.514577 CTGGCGTACTGCGAGGGG 62.515 72.222 11.73 0.00 44.85 4.79
1025 1067 2.442272 GGACGGAGCTCTAGGGCA 60.442 66.667 18.89 0.00 34.17 5.36
1094 1136 4.832608 GAAGTAGGTGCCGGCCGG 62.833 72.222 40.26 40.26 38.57 6.13
1305 1356 4.162690 GCCTCCCACTGTAGCGGG 62.163 72.222 0.00 0.00 44.60 6.13
1308 1359 1.065126 AGAATTGCCTCCCACTGTAGC 60.065 52.381 0.00 0.00 0.00 3.58
1367 1418 0.249238 CTGTACATGGCGAGCTCTCC 60.249 60.000 16.14 16.14 0.00 3.71
1465 1516 3.636764 GGTTTGGCTACCAATAGGGAATG 59.363 47.826 0.00 0.00 43.55 2.67
1476 1527 1.601166 AGTCGTTTGGTTTGGCTACC 58.399 50.000 2.87 2.87 38.73 3.18
1572 1628 4.083271 TCGAGGTCGATACAGCATATGAAG 60.083 45.833 6.97 0.00 44.22 3.02
1617 1673 6.016276 AGGGATATTGTTGTCTGTGTCAAAAC 60.016 38.462 0.00 0.00 0.00 2.43
1659 1715 4.344359 TCCCCTTTGCAAATGTTTAACC 57.656 40.909 13.23 0.00 0.00 2.85
1701 1757 8.844244 TCTTATATCAGTTTACGGAGGAAGTAC 58.156 37.037 0.00 0.00 0.00 2.73
1702 1758 8.985315 TCTTATATCAGTTTACGGAGGAAGTA 57.015 34.615 0.00 0.00 0.00 2.24
1703 1759 7.470286 GCTCTTATATCAGTTTACGGAGGAAGT 60.470 40.741 0.00 0.00 0.00 3.01
1704 1760 6.864165 GCTCTTATATCAGTTTACGGAGGAAG 59.136 42.308 0.00 0.00 0.00 3.46
1705 1761 6.514541 CGCTCTTATATCAGTTTACGGAGGAA 60.515 42.308 0.00 0.00 0.00 3.36
1706 1762 5.048921 CGCTCTTATATCAGTTTACGGAGGA 60.049 44.000 0.00 0.00 0.00 3.71
1707 1763 5.154932 CGCTCTTATATCAGTTTACGGAGG 58.845 45.833 0.00 0.00 0.00 4.30
1708 1764 5.759963 ACGCTCTTATATCAGTTTACGGAG 58.240 41.667 0.00 0.00 0.00 4.63
1709 1765 5.762825 ACGCTCTTATATCAGTTTACGGA 57.237 39.130 0.00 0.00 0.00 4.69
1710 1766 6.823678 AAACGCTCTTATATCAGTTTACGG 57.176 37.500 0.00 0.00 31.14 4.02
1711 1767 8.778141 TCTAAACGCTCTTATATCAGTTTACG 57.222 34.615 0.00 0.00 34.29 3.18
1714 1770 9.250624 GTGATCTAAACGCTCTTATATCAGTTT 57.749 33.333 0.00 0.00 36.11 2.66
1715 1771 8.634444 AGTGATCTAAACGCTCTTATATCAGTT 58.366 33.333 0.00 0.00 30.01 3.16
1716 1772 8.172352 AGTGATCTAAACGCTCTTATATCAGT 57.828 34.615 0.00 0.00 29.80 3.41
1724 1780 9.654663 AACTATTTTAGTGATCTAAACGCTCTT 57.345 29.630 0.00 0.00 43.20 2.85
1757 1813 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
1759 1815 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
1767 1823 9.892130 CTTCAAATACTCCCTCTGTAAACTAAT 57.108 33.333 0.00 0.00 0.00 1.73
1768 1824 9.096823 TCTTCAAATACTCCCTCTGTAAACTAA 57.903 33.333 0.00 0.00 0.00 2.24
1769 1825 8.660295 TCTTCAAATACTCCCTCTGTAAACTA 57.340 34.615 0.00 0.00 0.00 2.24
1770 1826 7.554959 TCTTCAAATACTCCCTCTGTAAACT 57.445 36.000 0.00 0.00 0.00 2.66
1771 1827 7.281100 CCATCTTCAAATACTCCCTCTGTAAAC 59.719 40.741 0.00 0.00 0.00 2.01
1772 1828 7.182026 TCCATCTTCAAATACTCCCTCTGTAAA 59.818 37.037 0.00 0.00 0.00 2.01
1773 1829 6.672218 TCCATCTTCAAATACTCCCTCTGTAA 59.328 38.462 0.00 0.00 0.00 2.41
1774 1830 6.202331 TCCATCTTCAAATACTCCCTCTGTA 58.798 40.000 0.00 0.00 0.00 2.74
1775 1831 5.032846 TCCATCTTCAAATACTCCCTCTGT 58.967 41.667 0.00 0.00 0.00 3.41
1776 1832 5.620738 TCCATCTTCAAATACTCCCTCTG 57.379 43.478 0.00 0.00 0.00 3.35
1777 1833 5.104318 GGTTCCATCTTCAAATACTCCCTCT 60.104 44.000 0.00 0.00 0.00 3.69
1778 1834 5.126779 GGTTCCATCTTCAAATACTCCCTC 58.873 45.833 0.00 0.00 0.00 4.30
1779 1835 4.540099 TGGTTCCATCTTCAAATACTCCCT 59.460 41.667 0.00 0.00 0.00 4.20
1780 1836 4.855340 TGGTTCCATCTTCAAATACTCCC 58.145 43.478 0.00 0.00 0.00 4.30
1781 1837 5.221126 GCATGGTTCCATCTTCAAATACTCC 60.221 44.000 0.86 0.00 0.00 3.85
1782 1838 5.221126 GGCATGGTTCCATCTTCAAATACTC 60.221 44.000 0.86 0.00 0.00 2.59
1783 1839 4.646492 GGCATGGTTCCATCTTCAAATACT 59.354 41.667 0.86 0.00 0.00 2.12
1827 1883 4.479786 AGATGCAGAAACCTTAGGAGAC 57.520 45.455 4.77 0.00 0.00 3.36
1843 1899 2.890109 CGAGCGCCATGGAAGATGC 61.890 63.158 18.40 10.48 0.00 3.91
1989 2045 6.961554 CGACAATACCTTTGTAGCTTTCATTC 59.038 38.462 0.00 0.00 31.96 2.67
2080 2136 6.006449 ACAGAATCAGTTGGCAGAAATAAGT 58.994 36.000 0.00 0.00 0.00 2.24
2175 2231 0.615850 TTATGCCATCCCGTGACACA 59.384 50.000 6.37 0.00 0.00 3.72
2209 2265 6.663093 ACTGCCATCACCTTAATATTGTTCAA 59.337 34.615 0.00 0.00 0.00 2.69
2240 2296 6.690194 AGTTGCAGCAATAGAATTAAGGAG 57.310 37.500 11.96 0.00 0.00 3.69
2405 2474 3.374042 TTCCCAAACTTGAGTGGTTCA 57.626 42.857 0.00 0.00 32.60 3.18
2480 2551 5.988561 ACTGCTCAAGAAACAACAACAAAAA 59.011 32.000 0.00 0.00 0.00 1.94
2544 2615 2.732597 CGCCTCTAACAGAGTACAGCAC 60.733 54.545 0.00 0.00 40.72 4.40
2603 2674 1.595109 CGCAAGACACCACAGCTCA 60.595 57.895 0.00 0.00 43.02 4.26
2783 2856 6.875076 TCTTTACTACCTGACTTCTATTGCC 58.125 40.000 0.00 0.00 0.00 4.52
2898 2971 0.098025 ACATTTTAATGTCGGCGGCG 59.902 50.000 27.15 27.15 46.10 6.46
2931 3004 0.688087 ATGGGTCGGAGGGAGAACTC 60.688 60.000 0.00 0.00 36.76 3.01
2988 3064 8.856103 TGTCGTTCAAATGGATATATCTAGACA 58.144 33.333 12.42 10.73 0.00 3.41
2998 3074 9.825109 TCATATTACTTGTCGTTCAAATGGATA 57.175 29.630 0.00 0.00 35.48 2.59
3040 3116 1.114627 GTCCCTCCAATTTCCCATGC 58.885 55.000 0.00 0.00 0.00 4.06
3170 3249 6.318900 GCAGTAAACTGGCCAATAGTTTCTAT 59.681 38.462 21.15 9.00 44.67 1.98
3384 3463 6.266558 AGGTATTACATTTTGCAAACAGGTCA 59.733 34.615 12.39 2.60 0.00 4.02
3589 3692 0.035630 GAGAGAGCAATGGCACCTGT 60.036 55.000 0.00 0.00 44.61 4.00
3602 3705 8.229137 GTGAAAACAGAAGAAATCATGAGAGAG 58.771 37.037 0.09 0.00 0.00 3.20
3603 3706 7.716560 TGTGAAAACAGAAGAAATCATGAGAGA 59.283 33.333 0.09 0.00 0.00 3.10
3664 3767 1.286260 CCAGCGGCTACGACTATCC 59.714 63.158 0.26 0.00 44.60 2.59
4093 4391 1.305201 AGTAGAGAGCGAGCACTAGC 58.695 55.000 0.00 0.00 42.56 3.42
4156 4454 7.147312 CACAATTTCCTCTATTGAAAACAGCA 58.853 34.615 0.00 0.00 36.67 4.41
4157 4455 6.587608 CCACAATTTCCTCTATTGAAAACAGC 59.412 38.462 0.00 0.00 36.67 4.40
4344 4650 7.734924 TTATGTATTGGAAGATCATGCAGTC 57.265 36.000 0.00 0.00 0.00 3.51
4623 4936 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4624 4937 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4625 4938 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
4626 4939 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
4627 4940 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
4628 4941 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
4629 4942 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
4630 4943 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
4655 4968 9.453572 CCGTCCCATAATATACTACTAGTGTAA 57.546 37.037 5.39 0.00 0.00 2.41
4656 4969 8.825774 TCCGTCCCATAATATACTACTAGTGTA 58.174 37.037 5.39 6.64 0.00 2.90
4657 4970 7.693132 TCCGTCCCATAATATACTACTAGTGT 58.307 38.462 5.39 4.48 0.00 3.55
4658 4971 7.282675 CCTCCGTCCCATAATATACTACTAGTG 59.717 44.444 5.39 0.00 0.00 2.74
4659 4972 7.344913 CCTCCGTCCCATAATATACTACTAGT 58.655 42.308 0.00 0.00 0.00 2.57
4660 4973 6.771749 CCCTCCGTCCCATAATATACTACTAG 59.228 46.154 0.00 0.00 0.00 2.57
4661 4974 6.448061 TCCCTCCGTCCCATAATATACTACTA 59.552 42.308 0.00 0.00 0.00 1.82
4662 4975 5.254737 TCCCTCCGTCCCATAATATACTACT 59.745 44.000 0.00 0.00 0.00 2.57
4663 4976 5.513233 TCCCTCCGTCCCATAATATACTAC 58.487 45.833 0.00 0.00 0.00 2.73
4664 4977 5.254737 ACTCCCTCCGTCCCATAATATACTA 59.745 44.000 0.00 0.00 0.00 1.82
4665 4978 4.045590 ACTCCCTCCGTCCCATAATATACT 59.954 45.833 0.00 0.00 0.00 2.12
4666 4979 4.351127 ACTCCCTCCGTCCCATAATATAC 58.649 47.826 0.00 0.00 0.00 1.47
4667 4980 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4668 4981 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4669 4982 4.202749 ACATACTCCCTCCGTCCCATAATA 60.203 45.833 0.00 0.00 0.00 0.98
4670 4983 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
4671 4984 2.090943 ACATACTCCCTCCGTCCCATAA 60.091 50.000 0.00 0.00 0.00 1.90
4672 4985 1.502039 ACATACTCCCTCCGTCCCATA 59.498 52.381 0.00 0.00 0.00 2.74
4673 4986 0.264955 ACATACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
4674 4987 0.928505 TACATACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
4675 4988 1.133544 ACTACATACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
4676 4989 2.361643 ACTACATACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
4677 4990 4.459330 ACTTACTACATACTCCCTCCGTC 58.541 47.826 0.00 0.00 0.00 4.79
4678 4991 4.516652 ACTTACTACATACTCCCTCCGT 57.483 45.455 0.00 0.00 0.00 4.69
4679 4992 5.619220 ACTACTTACTACATACTCCCTCCG 58.381 45.833 0.00 0.00 0.00 4.63
4680 4993 7.172361 CGTTACTACTTACTACATACTCCCTCC 59.828 44.444 0.00 0.00 0.00 4.30
4681 4994 7.172361 CCGTTACTACTTACTACATACTCCCTC 59.828 44.444 0.00 0.00 0.00 4.30
4682 4995 6.995091 CCGTTACTACTTACTACATACTCCCT 59.005 42.308 0.00 0.00 0.00 4.20
4683 4996 6.992715 TCCGTTACTACTTACTACATACTCCC 59.007 42.308 0.00 0.00 0.00 4.30
4684 4997 8.438676 TTCCGTTACTACTTACTACATACTCC 57.561 38.462 0.00 0.00 0.00 3.85
4685 4998 9.103861 ACTTCCGTTACTACTTACTACATACTC 57.896 37.037 0.00 0.00 0.00 2.59
4686 4999 8.887717 CACTTCCGTTACTACTTACTACATACT 58.112 37.037 0.00 0.00 0.00 2.12
4687 5000 7.641802 GCACTTCCGTTACTACTTACTACATAC 59.358 40.741 0.00 0.00 0.00 2.39
4688 5001 7.554118 AGCACTTCCGTTACTACTTACTACATA 59.446 37.037 0.00 0.00 0.00 2.29
4693 5006 4.522022 ACAGCACTTCCGTTACTACTTACT 59.478 41.667 0.00 0.00 0.00 2.24
4757 5070 5.195185 TGGATAGAAAATCAGCTGCATGAA 58.805 37.500 9.47 0.00 31.76 2.57
4758 5071 4.784177 TGGATAGAAAATCAGCTGCATGA 58.216 39.130 9.47 3.28 0.00 3.07
4768 5081 4.379302 AGCCTGGGATGGATAGAAAATC 57.621 45.455 0.00 0.00 0.00 2.17
4814 5127 0.813184 ACCATTCTGCATTTGGAGCG 59.187 50.000 14.61 0.00 34.52 5.03
4901 5214 7.504574 TGCATCATGGAGTATTCAGATTTTGAT 59.495 33.333 0.00 0.00 35.27 2.57
5157 5470 4.038042 AGGTTTGCAGCTCCTTCTAAAAAC 59.962 41.667 0.00 0.00 0.00 2.43
5278 5591 7.047891 CAGTAAAGGATATAGTTGGCAAGTCA 58.952 38.462 11.55 1.13 0.00 3.41
5327 5642 8.773033 ACTTATATTTAGGAACGAAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
5328 5643 7.564292 AGACTTATATTTAGGAACGAAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
5329 5644 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
5330 5645 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
5331 5646 8.959705 AAAGACTTATATTTAGGAACGAAGGG 57.040 34.615 0.00 0.00 0.00 3.95
5347 5662 8.616076 CGCATTGGAATCTCTAAAAAGACTTAT 58.384 33.333 0.00 0.00 0.00 1.73
5348 5663 7.065803 CCGCATTGGAATCTCTAAAAAGACTTA 59.934 37.037 0.00 0.00 42.00 2.24
5349 5664 6.127897 CCGCATTGGAATCTCTAAAAAGACTT 60.128 38.462 0.00 0.00 42.00 3.01
5350 5665 5.355350 CCGCATTGGAATCTCTAAAAAGACT 59.645 40.000 0.00 0.00 42.00 3.24
5351 5666 5.354234 TCCGCATTGGAATCTCTAAAAAGAC 59.646 40.000 0.00 0.00 46.38 3.01
5352 5667 5.496556 TCCGCATTGGAATCTCTAAAAAGA 58.503 37.500 0.00 0.00 46.38 2.52
5353 5668 5.818136 TCCGCATTGGAATCTCTAAAAAG 57.182 39.130 0.00 0.00 46.38 2.27
5366 5681 1.067974 TCCGTATGTAGTCCGCATTGG 59.932 52.381 0.00 0.00 40.09 3.16
5367 5682 2.223735 ACTCCGTATGTAGTCCGCATTG 60.224 50.000 0.00 0.00 0.00 2.82
5368 5683 2.029623 ACTCCGTATGTAGTCCGCATT 58.970 47.619 0.00 0.00 0.00 3.56
5369 5684 1.688772 ACTCCGTATGTAGTCCGCAT 58.311 50.000 0.00 0.00 0.00 4.73
5370 5685 2.330440 TACTCCGTATGTAGTCCGCA 57.670 50.000 0.00 0.00 0.00 5.69
5371 5686 3.698029 TTTACTCCGTATGTAGTCCGC 57.302 47.619 0.00 0.00 0.00 5.54
5372 5687 5.457799 CACATTTTACTCCGTATGTAGTCCG 59.542 44.000 0.00 0.00 30.53 4.79
5373 5688 6.255020 CACACATTTTACTCCGTATGTAGTCC 59.745 42.308 0.00 0.00 30.53 3.85
5374 5689 7.031372 TCACACATTTTACTCCGTATGTAGTC 58.969 38.462 0.00 0.00 30.53 2.59
5375 5690 6.927416 TCACACATTTTACTCCGTATGTAGT 58.073 36.000 0.00 0.00 30.53 2.73
5376 5691 7.821595 TTCACACATTTTACTCCGTATGTAG 57.178 36.000 0.00 0.00 30.53 2.74
5377 5692 8.255206 AGATTCACACATTTTACTCCGTATGTA 58.745 33.333 0.00 0.00 30.53 2.29
5378 5693 7.103641 AGATTCACACATTTTACTCCGTATGT 58.896 34.615 0.00 0.00 0.00 2.29
5379 5694 7.539712 AGATTCACACATTTTACTCCGTATG 57.460 36.000 0.00 0.00 0.00 2.39
5380 5695 8.255206 TGTAGATTCACACATTTTACTCCGTAT 58.745 33.333 0.00 0.00 0.00 3.06
5381 5696 7.543172 GTGTAGATTCACACATTTTACTCCGTA 59.457 37.037 11.87 0.00 46.55 4.02
5382 5697 6.367969 GTGTAGATTCACACATTTTACTCCGT 59.632 38.462 11.87 0.00 46.55 4.69
5383 5698 6.762108 GTGTAGATTCACACATTTTACTCCG 58.238 40.000 11.87 0.00 46.55 4.63
5416 5731 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
5417 5732 8.546322 AGGACTACATACGGATGTATATAGACA 58.454 37.037 20.64 2.07 45.42 3.41
5418 5733 8.961294 AGGACTACATACGGATGTATATAGAC 57.039 38.462 20.64 10.95 45.42 2.59
5423 5738 9.743581 TCAATAAGGACTACATACGGATGTATA 57.256 33.333 20.64 10.32 45.42 1.47
5424 5739 8.645814 TCAATAAGGACTACATACGGATGTAT 57.354 34.615 20.64 11.04 45.42 2.29
5425 5740 8.467963 TTCAATAAGGACTACATACGGATGTA 57.532 34.615 19.32 19.32 44.77 2.29
5427 5742 8.833231 ATTTCAATAAGGACTACATACGGATG 57.167 34.615 5.94 5.94 39.16 3.51
5428 5743 8.871125 AGATTTCAATAAGGACTACATACGGAT 58.129 33.333 0.00 0.00 0.00 4.18
5429 5744 8.246430 AGATTTCAATAAGGACTACATACGGA 57.754 34.615 0.00 0.00 0.00 4.69
5430 5745 8.361139 AGAGATTTCAATAAGGACTACATACGG 58.639 37.037 0.00 0.00 0.00 4.02
5438 5753 9.674068 GTCCTTTTAGAGATTTCAATAAGGACT 57.326 33.333 22.48 0.00 43.59 3.85
5439 5754 9.674068 AGTCCTTTTAGAGATTTCAATAAGGAC 57.326 33.333 22.38 22.38 45.08 3.85
5452 5767 9.810870 GAGGGAGTATATAAGTCCTTTTAGAGA 57.189 37.037 10.77 0.00 45.88 3.10
5453 5768 9.027202 GGAGGGAGTATATAAGTCCTTTTAGAG 57.973 40.741 10.77 0.00 45.88 2.43
5454 5769 7.668886 CGGAGGGAGTATATAAGTCCTTTTAGA 59.331 40.741 10.77 0.00 45.88 2.10
5455 5770 7.450944 ACGGAGGGAGTATATAAGTCCTTTTAG 59.549 40.741 10.77 4.15 45.88 1.85
5456 5771 7.300658 ACGGAGGGAGTATATAAGTCCTTTTA 58.699 38.462 10.77 0.00 45.88 1.52
5457 5772 6.141790 ACGGAGGGAGTATATAAGTCCTTTT 58.858 40.000 10.77 0.79 45.88 2.27
5458 5773 5.713807 ACGGAGGGAGTATATAAGTCCTTT 58.286 41.667 10.77 2.64 45.88 3.11
5459 5774 5.336491 ACGGAGGGAGTATATAAGTCCTT 57.664 43.478 10.77 4.99 45.88 3.36
5460 5775 6.460103 TTACGGAGGGAGTATATAAGTCCT 57.540 41.667 10.77 5.79 45.88 3.85
5461 5776 6.718912 AGTTTACGGAGGGAGTATATAAGTCC 59.281 42.308 4.40 4.40 45.89 3.85
5462 5777 7.757941 AGTTTACGGAGGGAGTATATAAGTC 57.242 40.000 0.00 0.00 0.00 3.01
5463 5778 9.819754 ATTAGTTTACGGAGGGAGTATATAAGT 57.180 33.333 0.00 0.00 0.00 2.24
5470 5785 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
5471 5786 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
5472 5787 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
5473 5788 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
5474 5789 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
5475 5790 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
5527 5842 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
5528 5843 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
5529 5844 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
5540 5855 8.934697 TGCAATAATATACTCCCTCTGTAAACT 58.065 33.333 0.00 0.00 0.00 2.66
5541 5856 9.209175 CTGCAATAATATACTCCCTCTGTAAAC 57.791 37.037 0.00 0.00 0.00 2.01
5542 5857 8.375506 CCTGCAATAATATACTCCCTCTGTAAA 58.624 37.037 0.00 0.00 0.00 2.01
5543 5858 7.733047 TCCTGCAATAATATACTCCCTCTGTAA 59.267 37.037 0.00 0.00 0.00 2.41
5544 5859 7.246027 TCCTGCAATAATATACTCCCTCTGTA 58.754 38.462 0.00 0.00 0.00 2.74
5545 5860 6.084738 TCCTGCAATAATATACTCCCTCTGT 58.915 40.000 0.00 0.00 0.00 3.41
5546 5861 6.438741 TCTCCTGCAATAATATACTCCCTCTG 59.561 42.308 0.00 0.00 0.00 3.35
5547 5862 6.565974 TCTCCTGCAATAATATACTCCCTCT 58.434 40.000 0.00 0.00 0.00 3.69
5548 5863 6.859112 TCTCCTGCAATAATATACTCCCTC 57.141 41.667 0.00 0.00 0.00 4.30
5549 5864 7.192852 CATCTCCTGCAATAATATACTCCCT 57.807 40.000 0.00 0.00 0.00 4.20
5571 5886 9.066892 ACAAAGACGGATATATGTTATTTGCAT 57.933 29.630 13.03 0.00 32.66 3.96
5574 5889 8.341903 TGCACAAAGACGGATATATGTTATTTG 58.658 33.333 0.00 12.23 34.20 2.32
5581 5896 5.698089 ACAGATGCACAAAGACGGATATATG 59.302 40.000 0.00 0.00 0.00 1.78
5640 5965 4.520179 ACGCATGGCATGTATGATATCAT 58.480 39.130 26.94 21.50 40.22 2.45
5648 5973 5.900425 TGAAAAATAACGCATGGCATGTAT 58.100 33.333 26.94 14.88 0.00 2.29
5664 5989 9.558648 GAAAAGTCATTTGCAAGTTTGAAAAAT 57.441 25.926 0.00 2.21 39.06 1.82
5842 6167 1.134367 TCAGTTAAGGATCTCACCGCG 59.866 52.381 0.00 0.00 34.73 6.46
5880 6205 1.678970 GGCAGGCCAACCGATCTTT 60.679 57.895 5.01 0.00 42.76 2.52
6096 6421 1.302993 GGCAGGGGAAAACGCTACA 60.303 57.895 0.00 0.00 40.92 2.74
6126 6451 2.438434 CGCCCCGAAAGAAGCCAT 60.438 61.111 0.00 0.00 0.00 4.40
6177 6502 2.884639 GCCACTTGTGAATACTTGTGGT 59.115 45.455 16.89 0.00 44.65 4.16
6291 6616 7.862372 AGTTGCAGCCATTACATAAATAATTCG 59.138 33.333 0.00 0.00 0.00 3.34
6296 6621 7.403312 ACAAGTTGCAGCCATTACATAAATA 57.597 32.000 1.81 0.00 0.00 1.40
6307 6632 2.095461 TGTTGTAACAAGTTGCAGCCA 58.905 42.857 13.32 7.92 36.05 4.75
6338 6663 1.765314 AGAACGCTAATCTGGAGCCAT 59.235 47.619 0.00 0.00 36.53 4.40
6353 6678 8.594881 AGGATATTATAGCAGAACAAAGAACG 57.405 34.615 0.00 0.00 0.00 3.95
6386 6711 4.608948 ACAGAAGAAGGTAGTTGGACTG 57.391 45.455 0.00 0.00 0.00 3.51
6477 6805 2.159170 TGCAGCCGCTTTGTTTTAGTTT 60.159 40.909 0.00 0.00 39.64 2.66
6480 6808 2.352503 ATGCAGCCGCTTTGTTTTAG 57.647 45.000 0.00 0.00 39.64 1.85
6481 6809 2.817258 AGTATGCAGCCGCTTTGTTTTA 59.183 40.909 0.00 0.00 39.64 1.52
6534 6864 4.651962 TGTCTTTGTCCGGTCATGGATATA 59.348 41.667 1.21 0.00 40.91 0.86
6657 7000 5.798132 CAAGCAGCATACAAGGGATATAGA 58.202 41.667 0.00 0.00 0.00 1.98
6788 7160 8.902806 CATGTAGCAGTTATATGGAAGGAAAAA 58.097 33.333 0.00 0.00 29.82 1.94
6800 7173 9.938280 GTGGTATATTTCCATGTAGCAGTTATA 57.062 33.333 3.27 0.00 35.77 0.98
6827 7200 4.792521 TGGAAGTAGAAGAGAACTGCTC 57.207 45.455 0.00 0.00 44.29 4.26
6832 7205 9.924650 TGTAAACTAATGGAAGTAGAAGAGAAC 57.075 33.333 0.00 0.00 36.42 3.01
6836 7209 8.431910 ACCTGTAAACTAATGGAAGTAGAAGA 57.568 34.615 0.00 0.00 36.42 2.87
6883 7256 2.515398 CCTGCCTGTGGGTGAACA 59.485 61.111 0.00 0.00 34.45 3.18
6896 7269 4.096984 CCAATGATGTAGAGAAAACCCTGC 59.903 45.833 0.00 0.00 0.00 4.85
6898 7271 5.779241 TCCAATGATGTAGAGAAAACCCT 57.221 39.130 0.00 0.00 0.00 4.34
6910 7283 5.649395 ACGACAAAGATGATTCCAATGATGT 59.351 36.000 0.00 0.00 0.00 3.06
6945 7318 1.220749 CGCTTCCCGAGGAATCCAA 59.779 57.895 0.61 0.00 41.23 3.53
6997 7370 9.625747 ATGTTGAGGGTTAAACATGAAAATTTT 57.374 25.926 2.28 2.28 43.56 1.82
7098 7473 2.283298 CCATTCAACTGGACCTCATCG 58.717 52.381 0.00 0.00 38.69 3.84
7103 7478 2.443255 AGTCAACCATTCAACTGGACCT 59.557 45.455 0.00 0.00 39.73 3.85
7149 7524 1.837051 ACTGTTCTCGGGACCAGCA 60.837 57.895 10.14 0.00 35.74 4.41
7152 7527 2.741092 GCACTGTTCTCGGGACCA 59.259 61.111 0.00 0.00 0.00 4.02
7158 7533 2.605823 GGATAGATCCGCACTGTTCTCG 60.606 54.545 0.00 0.00 37.19 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.