Multiple sequence alignment - TraesCS5A01G483700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G483700 chr5A 100.000 5946 0 0 1 5946 654612279 654618224 0.000000e+00 10981.0
1 TraesCS5A01G483700 chr5A 93.151 73 3 2 1 71 654564396 654564468 8.150000e-19 106.0
2 TraesCS5A01G483700 chr5A 95.161 62 3 0 1 62 654571873 654571934 1.360000e-16 99.0
3 TraesCS5A01G483700 chr5D 93.684 4291 187 30 1724 5946 527494786 527499060 0.000000e+00 6346.0
4 TraesCS5A01G483700 chr5D 87.751 947 76 16 1 935 527492983 527493901 0.000000e+00 1070.0
5 TraesCS5A01G483700 chr5D 93.043 115 8 0 1379 1493 270254141 270254027 1.020000e-37 169.0
6 TraesCS5A01G483700 chr5D 94.521 73 2 2 1 71 527434650 527434722 1.750000e-20 111.0
7 TraesCS5A01G483700 chr5B 91.472 3518 199 36 1691 5155 664018384 664021853 0.000000e+00 4741.0
8 TraesCS5A01G483700 chr5B 91.930 1202 82 8 1 1187 664016805 664018006 0.000000e+00 1668.0
9 TraesCS5A01G483700 chr5B 95.610 820 30 4 5133 5946 664021858 664022677 0.000000e+00 1310.0
10 TraesCS5A01G483700 chr5B 91.467 375 25 5 2044 2416 678674102 678674471 5.320000e-140 508.0
11 TraesCS5A01G483700 chr5B 89.764 127 10 2 1369 1494 227837192 227837316 6.170000e-35 159.0
12 TraesCS5A01G483700 chr5B 92.593 81 6 0 2509 2589 678674517 678674597 3.770000e-22 117.0
13 TraesCS5A01G483700 chr5B 93.151 73 3 2 1 71 663801091 663801163 8.150000e-19 106.0
14 TraesCS5A01G483700 chr5B 91.781 73 4 2 1 71 663923248 663923320 3.790000e-17 100.0
15 TraesCS5A01G483700 chr5B 88.462 78 9 0 1 78 663988208 663988285 1.760000e-15 95.3
16 TraesCS5A01G483700 chr2A 89.011 546 33 9 2044 2589 97847986 97848504 0.000000e+00 651.0
17 TraesCS5A01G483700 chr2A 91.525 118 10 0 1379 1496 148025344 148025461 4.770000e-36 163.0
18 TraesCS5A01G483700 chr2A 90.323 124 10 1 1369 1492 78848815 78848936 1.710000e-35 161.0
19 TraesCS5A01G483700 chr6B 94.231 416 21 2 2170 2585 173904640 173904228 3.020000e-177 632.0
20 TraesCS5A01G483700 chr6B 92.308 117 9 0 1379 1495 601043173 601043057 3.690000e-37 167.0
21 TraesCS5A01G483700 chr6B 90.323 124 10 1 1369 1492 644377917 644377796 1.710000e-35 161.0
22 TraesCS5A01G483700 chr2B 92.982 114 8 0 1379 1492 441077070 441076957 3.690000e-37 167.0
23 TraesCS5A01G483700 chr1D 90.833 120 11 0 1379 1498 416663338 416663219 1.710000e-35 161.0
24 TraesCS5A01G483700 chr4B 88.060 134 14 2 1379 1510 575779055 575778922 2.220000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G483700 chr5A 654612279 654618224 5945 False 10981 10981 100.0000 1 5946 1 chr5A.!!$F3 5945
1 TraesCS5A01G483700 chr5D 527492983 527499060 6077 False 3708 6346 90.7175 1 5946 2 chr5D.!!$F2 5945
2 TraesCS5A01G483700 chr5B 664016805 664022677 5872 False 2573 4741 93.0040 1 5946 3 chr5B.!!$F5 5945
3 TraesCS5A01G483700 chr2A 97847986 97848504 518 False 651 651 89.0110 2044 2589 1 chr2A.!!$F2 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 936 0.249955 AGCAGCTGAAGAAGGAGCTC 59.750 55.0 20.43 4.71 43.88 4.09 F
1257 1294 0.035056 ACTGCAGTAGGTGGCATTCC 60.035 55.0 20.16 0.00 39.65 3.01 F
1259 1296 0.035152 TGCAGTAGGTGGCATTCCTG 60.035 55.0 6.90 4.79 36.60 3.86 F
2827 3207 0.038744 CATGGCTGTTGGGAGGTTCT 59.961 55.0 0.00 0.00 0.00 3.01 F
3489 3869 0.439985 CTGCCATGAACTTCGTGACG 59.560 55.0 11.93 0.00 35.46 4.35 F
4302 4688 0.523966 CGTGTCCTCAGTCAGACCTC 59.476 60.0 0.00 0.00 31.76 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 2225 0.035056 CAACCGAGGGAGAGGCAAAT 60.035 55.0 0.00 0.00 0.00 2.32 R
2799 3179 0.320073 CAACAGCCATGCAAACCTGG 60.320 55.0 13.25 7.59 35.53 4.45 R
2949 3329 0.734253 CCAGCGACTTCTTCAGGACG 60.734 60.0 0.00 0.00 0.00 4.79 R
4645 5046 0.323178 CCATCCAGTTTGGCTGCTCT 60.323 55.0 0.00 0.00 43.71 4.09 R
4896 5299 0.033601 AACTTGTTCACCCACAGGCA 60.034 50.0 0.00 0.00 36.11 4.75 R
5617 6068 0.606130 TTTGCCTCGCATGAGCTTCA 60.606 50.0 0.00 0.00 41.13 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 93 4.719106 AGCAGCAGCAGCCCTGAC 62.719 66.667 13.46 6.09 44.64 3.51
181 189 4.780815 TCCTCTCTTCTCTTCTGCTCTAG 58.219 47.826 0.00 0.00 0.00 2.43
228 236 3.570125 GGCTAGGAATTTTATGCTGGTCC 59.430 47.826 0.00 0.00 0.00 4.46
243 251 1.165270 GGTCCGTGAACTGAAATGGG 58.835 55.000 0.00 0.00 0.00 4.00
244 252 0.521735 GTCCGTGAACTGAAATGGGC 59.478 55.000 0.00 0.00 0.00 5.36
280 288 1.526887 GATCATTGATGCGGTGGTACG 59.473 52.381 3.32 0.00 0.00 3.67
331 342 1.197036 GTTTTCTGCTACGGAACTGCC 59.803 52.381 0.00 0.00 0.00 4.85
335 346 1.005037 TGCTACGGAACTGCCTGTG 60.005 57.895 0.00 0.00 0.00 3.66
339 350 0.535335 TACGGAACTGCCTGTGGATC 59.465 55.000 0.00 0.00 0.00 3.36
359 370 6.894654 TGGATCCAATTCCTATTGCAGTTTTA 59.105 34.615 13.46 0.00 39.87 1.52
380 391 7.962964 TTTAAATCTGCCGGTAGATAAGATG 57.037 36.000 31.83 0.00 36.42 2.90
411 422 8.623903 TGCAGATATAACAAGTTTGATTGATCC 58.376 33.333 0.00 0.00 34.20 3.36
538 550 4.202409 ACTCAGAGCAGAAACCTAAAAGCT 60.202 41.667 0.00 0.00 34.61 3.74
562 574 4.202223 TGTGGGAAGAACTGTCAGTAAGTC 60.202 45.833 5.77 0.17 0.00 3.01
578 594 6.147821 TCAGTAAGTCATCTTTACAGCTTTGC 59.852 38.462 0.00 0.00 35.36 3.68
592 608 2.158928 AGCTTTGCTGCACATTGGAAAA 60.159 40.909 0.00 0.00 37.57 2.29
622 639 2.230992 TGGAAAAGGATGGCAAATGTCG 59.769 45.455 0.00 0.00 0.00 4.35
635 655 3.433615 GCAAATGTCGACTTGCTAGAAGT 59.566 43.478 26.48 0.26 43.68 3.01
639 659 4.156664 TGTCGACTTGCTAGAAGTACAC 57.843 45.455 17.92 2.29 0.00 2.90
673 693 3.324846 CAGCTGGTAACTATGGCCTATGA 59.675 47.826 5.57 0.00 37.61 2.15
680 700 4.559862 AACTATGGCCTATGATGTAGCC 57.440 45.455 3.32 0.00 45.96 3.93
694 714 6.573664 TGATGTAGCCCATGCAAATTATAC 57.426 37.500 0.00 0.00 41.13 1.47
707 727 9.110617 CATGCAAATTATACTTATTTCTGCTCG 57.889 33.333 0.00 0.00 0.00 5.03
710 730 7.112148 GCAAATTATACTTATTTCTGCTCGTGC 59.888 37.037 1.71 1.71 40.20 5.34
770 790 1.874019 CTGAACATCGACGGCTCGG 60.874 63.158 0.00 0.00 40.58 4.63
847 867 2.486472 ATGCTCAGGGTGACAAGAAG 57.514 50.000 0.00 0.00 0.00 2.85
855 875 2.158608 AGGGTGACAAGAAGGGAACAAG 60.159 50.000 0.00 0.00 0.00 3.16
916 936 0.249955 AGCAGCTGAAGAAGGAGCTC 59.750 55.000 20.43 4.71 43.88 4.09
931 951 2.977178 CTCGGGCTCAGCTGAACT 59.023 61.111 18.85 0.00 0.00 3.01
941 961 1.027357 CAGCTGAACTGTTGCCTGTT 58.973 50.000 8.42 0.00 41.86 3.16
943 963 1.024271 GCTGAACTGTTGCCTGTTGA 58.976 50.000 0.00 0.00 33.45 3.18
945 965 2.016318 CTGAACTGTTGCCTGTTGACA 58.984 47.619 0.00 0.00 33.45 3.58
952 972 1.201181 GTTGCCTGTTGACAACACACA 59.799 47.619 17.02 14.33 44.39 3.72
956 976 1.735018 CCTGTTGACAACACACAACGA 59.265 47.619 17.02 0.00 46.06 3.85
957 977 2.354510 CCTGTTGACAACACACAACGAT 59.645 45.455 17.02 0.00 46.06 3.73
967 987 1.100463 ACACAACGATGGCAACTGCA 61.100 50.000 3.76 0.00 44.36 4.41
979 999 1.228245 AACTGCAGCCACCGTGATT 60.228 52.632 15.27 0.00 0.00 2.57
987 1007 1.024579 GCCACCGTGATTGGTACCAG 61.025 60.000 15.65 4.79 41.38 4.00
992 1012 1.600107 GTGATTGGTACCAGCCCGA 59.400 57.895 15.65 0.00 0.00 5.14
1010 1030 2.289694 CCGATGTTCATATGGAGGTCCC 60.290 54.545 2.13 0.00 34.29 4.46
1073 1099 5.878406 AGATGCTGTACTTTAGCTGGTAT 57.122 39.130 0.00 0.00 41.66 2.73
1088 1114 1.125633 GGTATAGCTTTCCGGTGGGA 58.874 55.000 0.00 0.00 41.83 4.37
1124 1150 5.254842 CGTTTTGCAGAATGTTTTTGTTCC 58.745 37.500 1.05 0.00 39.31 3.62
1126 1152 6.477742 GTTTTGCAGAATGTTTTTGTTCCTC 58.522 36.000 0.00 0.00 39.31 3.71
1149 1175 0.517316 CGTAGGGCTGCAGTTTGTTC 59.483 55.000 16.64 0.00 0.00 3.18
1188 1216 0.037232 GGCGTGTGCTTCCTTCTAGT 60.037 55.000 0.00 0.00 42.25 2.57
1190 1218 2.531206 GCGTGTGCTTCCTTCTAGTAG 58.469 52.381 0.00 0.00 38.39 2.57
1192 1220 3.128242 GCGTGTGCTTCCTTCTAGTAGTA 59.872 47.826 0.00 0.00 38.39 1.82
1193 1221 4.660105 CGTGTGCTTCCTTCTAGTAGTAC 58.340 47.826 0.00 0.00 0.00 2.73
1194 1222 4.155462 CGTGTGCTTCCTTCTAGTAGTACA 59.845 45.833 2.52 0.00 32.13 2.90
1196 1224 5.183522 GTGTGCTTCCTTCTAGTAGTACAGT 59.816 44.000 2.52 0.00 34.64 3.55
1200 1228 8.302438 GTGCTTCCTTCTAGTAGTACAGTTTTA 58.698 37.037 2.52 0.00 0.00 1.52
1205 1233 9.578576 TCCTTCTAGTAGTACAGTTTTACTTGA 57.421 33.333 2.52 0.00 34.10 3.02
1221 1258 4.687901 ACTTGAATTTTGGGGTGAAAGG 57.312 40.909 0.00 0.00 0.00 3.11
1223 1260 4.719273 ACTTGAATTTTGGGGTGAAAGGAA 59.281 37.500 0.00 0.00 0.00 3.36
1228 1265 3.390175 TTTGGGGTGAAAGGAACTGAA 57.610 42.857 0.00 0.00 40.86 3.02
1230 1267 2.944129 TGGGGTGAAAGGAACTGAAAG 58.056 47.619 0.00 0.00 40.86 2.62
1237 1274 1.061546 AAGGAACTGAAAGCCCGGTA 58.938 50.000 0.00 0.00 40.86 4.02
1239 1276 1.162698 GGAACTGAAAGCCCGGTAAC 58.837 55.000 0.00 0.00 37.60 2.50
1240 1277 1.271217 GGAACTGAAAGCCCGGTAACT 60.271 52.381 0.00 0.00 37.60 2.24
1241 1278 1.804748 GAACTGAAAGCCCGGTAACTG 59.195 52.381 0.00 0.00 37.60 3.16
1242 1279 0.605589 ACTGAAAGCCCGGTAACTGC 60.606 55.000 0.00 0.00 37.60 4.40
1243 1280 0.605319 CTGAAAGCCCGGTAACTGCA 60.605 55.000 0.00 0.00 34.75 4.41
1246 1283 0.688487 AAAGCCCGGTAACTGCAGTA 59.312 50.000 22.01 5.84 34.75 2.74
1248 1285 1.153429 GCCCGGTAACTGCAGTAGG 60.153 63.158 22.01 19.61 32.79 3.18
1250 1287 0.108329 CCCGGTAACTGCAGTAGGTG 60.108 60.000 22.01 10.76 0.00 4.00
1251 1288 0.108329 CCGGTAACTGCAGTAGGTGG 60.108 60.000 22.01 16.02 0.00 4.61
1252 1289 0.739813 CGGTAACTGCAGTAGGTGGC 60.740 60.000 22.01 6.73 0.00 5.01
1253 1290 0.323629 GGTAACTGCAGTAGGTGGCA 59.676 55.000 22.01 0.00 38.52 4.92
1254 1291 1.065418 GGTAACTGCAGTAGGTGGCAT 60.065 52.381 22.01 3.99 39.65 4.40
1256 1293 1.826385 AACTGCAGTAGGTGGCATTC 58.174 50.000 22.01 0.00 39.65 2.67
1257 1294 0.035056 ACTGCAGTAGGTGGCATTCC 60.035 55.000 20.16 0.00 39.65 3.01
1258 1295 0.254178 CTGCAGTAGGTGGCATTCCT 59.746 55.000 5.25 1.93 39.65 3.36
1259 1296 0.035152 TGCAGTAGGTGGCATTCCTG 60.035 55.000 6.90 4.79 36.60 3.86
1277 1348 2.101575 CGGCTCGATTTCGACGGA 59.898 61.111 0.00 0.00 44.22 4.69
1280 1351 0.853419 GGCTCGATTTCGACGGAATC 59.147 55.000 17.41 17.41 44.22 2.52
1286 1357 3.059884 CGATTTCGACGGAATCATGGAT 58.940 45.455 24.79 0.00 43.02 3.41
1288 1359 3.535280 TTTCGACGGAATCATGGATGA 57.465 42.857 0.00 0.00 41.70 2.92
1290 1361 3.097877 TCGACGGAATCATGGATGAAG 57.902 47.619 0.00 0.00 40.69 3.02
1291 1362 2.138320 CGACGGAATCATGGATGAAGG 58.862 52.381 0.00 0.00 40.69 3.46
1292 1363 2.498167 GACGGAATCATGGATGAAGGG 58.502 52.381 0.00 0.00 40.69 3.95
1293 1364 2.104792 GACGGAATCATGGATGAAGGGA 59.895 50.000 0.00 0.00 40.69 4.20
1295 1366 2.158769 CGGAATCATGGATGAAGGGACA 60.159 50.000 0.00 0.00 40.69 4.02
1296 1367 3.497405 CGGAATCATGGATGAAGGGACAT 60.497 47.826 0.00 0.00 40.69 3.06
1299 1370 6.251471 GGAATCATGGATGAAGGGACATAAT 58.749 40.000 0.00 0.00 40.69 1.28
1300 1371 6.376581 GGAATCATGGATGAAGGGACATAATC 59.623 42.308 0.00 0.00 40.69 1.75
1301 1372 5.910355 TCATGGATGAAGGGACATAATCA 57.090 39.130 0.00 0.00 33.08 2.57
1302 1373 5.624159 TCATGGATGAAGGGACATAATCAC 58.376 41.667 0.00 0.00 33.08 3.06
1303 1374 5.132480 TCATGGATGAAGGGACATAATCACA 59.868 40.000 0.00 0.00 33.08 3.58
1304 1375 4.780815 TGGATGAAGGGACATAATCACAC 58.219 43.478 0.00 0.00 30.38 3.82
1305 1376 4.137543 GGATGAAGGGACATAATCACACC 58.862 47.826 0.00 0.00 30.38 4.16
1306 1377 3.260475 TGAAGGGACATAATCACACCG 57.740 47.619 0.00 0.00 30.38 4.94
1307 1378 2.835156 TGAAGGGACATAATCACACCGA 59.165 45.455 0.00 0.00 30.38 4.69
1308 1379 3.262151 TGAAGGGACATAATCACACCGAA 59.738 43.478 0.00 0.00 30.38 4.30
1309 1380 3.992943 AGGGACATAATCACACCGAAA 57.007 42.857 0.00 0.00 30.38 3.46
1310 1381 3.873910 AGGGACATAATCACACCGAAAG 58.126 45.455 0.00 0.00 30.38 2.62
1311 1382 3.517901 AGGGACATAATCACACCGAAAGA 59.482 43.478 0.00 0.00 30.38 2.52
1313 1384 4.332819 GGGACATAATCACACCGAAAGAAG 59.667 45.833 0.00 0.00 0.00 2.85
1314 1385 4.201822 GGACATAATCACACCGAAAGAAGC 60.202 45.833 0.00 0.00 0.00 3.86
1315 1386 4.323417 ACATAATCACACCGAAAGAAGCA 58.677 39.130 0.00 0.00 0.00 3.91
1316 1387 4.393062 ACATAATCACACCGAAAGAAGCAG 59.607 41.667 0.00 0.00 0.00 4.24
1317 1388 1.160137 ATCACACCGAAAGAAGCAGC 58.840 50.000 0.00 0.00 0.00 5.25
1318 1389 1.205064 CACACCGAAAGAAGCAGCG 59.795 57.895 0.00 0.00 0.00 5.18
1321 1392 3.655481 CCGAAAGAAGCAGCGGTT 58.345 55.556 0.00 0.00 38.99 4.44
1323 1394 1.497722 CGAAAGAAGCAGCGGTTCC 59.502 57.895 14.02 2.63 40.41 3.62
1324 1395 1.227999 CGAAAGAAGCAGCGGTTCCA 61.228 55.000 14.02 0.00 40.41 3.53
1325 1396 1.168714 GAAAGAAGCAGCGGTTCCAT 58.831 50.000 14.02 6.25 40.41 3.41
1326 1397 1.541588 GAAAGAAGCAGCGGTTCCATT 59.458 47.619 14.02 10.79 40.41 3.16
1327 1398 1.620822 AAGAAGCAGCGGTTCCATTT 58.379 45.000 14.02 3.48 40.41 2.32
1328 1399 1.620822 AGAAGCAGCGGTTCCATTTT 58.379 45.000 14.02 0.00 40.41 1.82
1329 1400 1.963515 AGAAGCAGCGGTTCCATTTTT 59.036 42.857 14.02 0.00 40.41 1.94
1330 1401 2.029918 AGAAGCAGCGGTTCCATTTTTC 60.030 45.455 14.02 0.00 40.41 2.29
1331 1402 1.620822 AGCAGCGGTTCCATTTTTCT 58.379 45.000 0.00 0.00 0.00 2.52
1332 1403 1.963515 AGCAGCGGTTCCATTTTTCTT 59.036 42.857 0.00 0.00 0.00 2.52
1333 1404 2.365293 AGCAGCGGTTCCATTTTTCTTT 59.635 40.909 0.00 0.00 0.00 2.52
1334 1405 3.130633 GCAGCGGTTCCATTTTTCTTTT 58.869 40.909 0.00 0.00 0.00 2.27
1335 1406 3.559655 GCAGCGGTTCCATTTTTCTTTTT 59.440 39.130 0.00 0.00 0.00 1.94
1336 1407 4.552572 GCAGCGGTTCCATTTTTCTTTTTG 60.553 41.667 0.00 0.00 0.00 2.44
1337 1408 4.808364 CAGCGGTTCCATTTTTCTTTTTGA 59.192 37.500 0.00 0.00 0.00 2.69
1338 1409 4.808895 AGCGGTTCCATTTTTCTTTTTGAC 59.191 37.500 0.00 0.00 0.00 3.18
1339 1410 4.025229 GCGGTTCCATTTTTCTTTTTGACC 60.025 41.667 0.00 0.00 0.00 4.02
1340 1411 4.208253 CGGTTCCATTTTTCTTTTTGACCG 59.792 41.667 0.00 0.00 40.02 4.79
1341 1412 4.509970 GGTTCCATTTTTCTTTTTGACCGG 59.490 41.667 0.00 0.00 0.00 5.28
1342 1413 4.329462 TCCATTTTTCTTTTTGACCGGG 57.671 40.909 6.32 0.00 0.00 5.73
1343 1414 3.707102 TCCATTTTTCTTTTTGACCGGGT 59.293 39.130 6.32 0.00 0.00 5.28
1344 1415 4.055360 CCATTTTTCTTTTTGACCGGGTC 58.945 43.478 20.36 20.36 0.00 4.46
1345 1416 4.442192 CCATTTTTCTTTTTGACCGGGTCA 60.442 41.667 25.53 25.53 41.09 4.02
1346 1417 4.379339 TTTTTCTTTTTGACCGGGTCAG 57.621 40.909 27.32 17.17 43.69 3.51
1347 1418 1.314730 TTCTTTTTGACCGGGTCAGC 58.685 50.000 27.32 3.62 43.69 4.26
1348 1419 0.882927 TCTTTTTGACCGGGTCAGCG 60.883 55.000 27.32 17.19 43.69 5.18
1349 1420 1.852067 CTTTTTGACCGGGTCAGCGG 61.852 60.000 27.32 15.89 43.69 5.52
1350 1421 2.612095 TTTTTGACCGGGTCAGCGGT 62.612 55.000 27.32 7.23 43.69 5.68
1351 1422 2.612095 TTTTGACCGGGTCAGCGGTT 62.612 55.000 27.32 0.00 43.69 4.44
1352 1423 2.999739 TTTGACCGGGTCAGCGGTTC 63.000 60.000 27.32 0.56 43.69 3.62
1353 1424 4.754667 GACCGGGTCAGCGGTTCC 62.755 72.222 22.10 0.00 38.78 3.62
1355 1426 4.096003 CCGGGTCAGCGGTTCCAT 62.096 66.667 0.00 0.00 0.00 3.41
1356 1427 2.046314 CGGGTCAGCGGTTCCATT 60.046 61.111 7.70 0.00 0.00 3.16
1357 1428 1.674322 CGGGTCAGCGGTTCCATTT 60.674 57.895 7.70 0.00 0.00 2.32
1358 1429 1.644786 CGGGTCAGCGGTTCCATTTC 61.645 60.000 7.70 0.00 0.00 2.17
1359 1430 1.644786 GGGTCAGCGGTTCCATTTCG 61.645 60.000 7.70 0.00 0.00 3.46
1360 1431 0.953960 GGTCAGCGGTTCCATTTCGT 60.954 55.000 0.00 0.00 0.00 3.85
1361 1432 0.872388 GTCAGCGGTTCCATTTCGTT 59.128 50.000 0.00 0.00 0.00 3.85
1362 1433 1.265905 GTCAGCGGTTCCATTTCGTTT 59.734 47.619 0.00 0.00 0.00 3.60
1363 1434 1.265635 TCAGCGGTTCCATTTCGTTTG 59.734 47.619 0.00 0.00 0.00 2.93
1364 1435 1.001815 CAGCGGTTCCATTTCGTTTGT 60.002 47.619 0.00 0.00 0.00 2.83
1365 1436 1.001815 AGCGGTTCCATTTCGTTTGTG 60.002 47.619 0.00 0.00 0.00 3.33
1366 1437 1.002251 GCGGTTCCATTTCGTTTGTGA 60.002 47.619 0.00 0.00 0.00 3.58
1367 1438 2.916111 CGGTTCCATTTCGTTTGTGAG 58.084 47.619 0.00 0.00 0.00 3.51
1368 1439 2.546368 CGGTTCCATTTCGTTTGTGAGA 59.454 45.455 0.00 0.00 0.00 3.27
1369 1440 3.363970 CGGTTCCATTTCGTTTGTGAGAG 60.364 47.826 0.00 0.00 0.00 3.20
1370 1441 3.813166 GGTTCCATTTCGTTTGTGAGAGA 59.187 43.478 0.00 0.00 0.00 3.10
1371 1442 4.274950 GGTTCCATTTCGTTTGTGAGAGAA 59.725 41.667 0.00 0.00 0.00 2.87
1372 1443 5.048713 GGTTCCATTTCGTTTGTGAGAGAAT 60.049 40.000 0.00 0.00 0.00 2.40
1373 1444 5.611796 TCCATTTCGTTTGTGAGAGAATG 57.388 39.130 0.00 0.00 0.00 2.67
1374 1445 5.063204 TCCATTTCGTTTGTGAGAGAATGT 58.937 37.500 0.00 0.00 0.00 2.71
1375 1446 6.227522 TCCATTTCGTTTGTGAGAGAATGTA 58.772 36.000 0.00 0.00 0.00 2.29
1376 1447 6.147164 TCCATTTCGTTTGTGAGAGAATGTAC 59.853 38.462 0.00 0.00 0.00 2.90
1377 1448 5.917541 TTTCGTTTGTGAGAGAATGTACC 57.082 39.130 0.00 0.00 0.00 3.34
1382 1453 2.100197 TGTGAGAGAATGTACCCTCCG 58.900 52.381 0.00 0.00 0.00 4.63
1388 1459 0.101939 GAATGTACCCTCCGTCCGTC 59.898 60.000 0.00 0.00 0.00 4.79
1398 1469 1.133790 CTCCGTCCGTCCGAAAATACT 59.866 52.381 0.00 0.00 0.00 2.12
1407 1478 6.146021 GTCCGTCCGAAAATACTTGTTTTAGA 59.854 38.462 0.00 0.00 31.80 2.10
1409 1480 7.226325 TCCGTCCGAAAATACTTGTTTTAGAAA 59.774 33.333 0.00 0.00 31.80 2.52
1410 1481 8.019094 CCGTCCGAAAATACTTGTTTTAGAAAT 58.981 33.333 0.00 0.00 31.80 2.17
1479 1597 6.851609 TCATTTCAATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 40.32 5.14
1495 1613 0.110104 CCGGACGGAGGGAGTAGTAT 59.890 60.000 4.40 0.00 37.50 2.12
1496 1614 1.236628 CGGACGGAGGGAGTAGTATG 58.763 60.000 0.00 0.00 0.00 2.39
1497 1615 1.476471 CGGACGGAGGGAGTAGTATGT 60.476 57.143 0.00 0.00 0.00 2.29
1498 1616 2.228925 GGACGGAGGGAGTAGTATGTC 58.771 57.143 0.00 0.00 0.00 3.06
1500 1618 2.879646 GACGGAGGGAGTAGTATGTCTG 59.120 54.545 0.00 0.00 0.00 3.51
1501 1619 2.508716 ACGGAGGGAGTAGTATGTCTGA 59.491 50.000 0.00 0.00 0.00 3.27
1504 1622 4.686396 CGGAGGGAGTAGTATGTCTGAAGA 60.686 50.000 0.00 0.00 0.00 2.87
1505 1623 5.202004 GGAGGGAGTAGTATGTCTGAAGAA 58.798 45.833 0.00 0.00 0.00 2.52
1509 1627 8.152023 AGGGAGTAGTATGTCTGAAGAAAAAT 57.848 34.615 0.00 0.00 0.00 1.82
1510 1628 8.043710 AGGGAGTAGTATGTCTGAAGAAAAATG 58.956 37.037 0.00 0.00 0.00 2.32
1511 1629 7.281100 GGGAGTAGTATGTCTGAAGAAAAATGG 59.719 40.741 0.00 0.00 0.00 3.16
1512 1630 7.201652 GGAGTAGTATGTCTGAAGAAAAATGGC 60.202 40.741 0.00 0.00 0.00 4.40
1513 1631 5.551760 AGTATGTCTGAAGAAAAATGGCG 57.448 39.130 0.00 0.00 0.00 5.69
1516 1634 2.287547 TGTCTGAAGAAAAATGGCGTGC 60.288 45.455 0.00 0.00 0.00 5.34
1517 1635 1.269448 TCTGAAGAAAAATGGCGTGCC 59.731 47.619 3.30 3.30 0.00 5.01
1518 1636 0.316841 TGAAGAAAAATGGCGTGCCC 59.683 50.000 8.69 0.00 34.56 5.36
1526 1644 2.748251 TGGCGTGCCCAATTACGG 60.748 61.111 8.69 0.00 41.82 4.02
1534 1652 3.168773 CCCAATTACGGGGTGACTG 57.831 57.895 0.00 0.00 43.21 3.51
1542 1701 0.393077 ACGGGGTGACTGAACTGAAG 59.607 55.000 0.00 0.00 0.00 3.02
1545 1704 1.420138 GGGGTGACTGAACTGAAGGAA 59.580 52.381 0.00 0.00 0.00 3.36
1557 1716 3.536287 ACTGAAGGAAAGAGGGAAGGAT 58.464 45.455 0.00 0.00 0.00 3.24
1558 1717 3.919554 ACTGAAGGAAAGAGGGAAGGATT 59.080 43.478 0.00 0.00 0.00 3.01
1559 1718 4.355287 ACTGAAGGAAAGAGGGAAGGATTT 59.645 41.667 0.00 0.00 0.00 2.17
1561 1720 5.079643 TGAAGGAAAGAGGGAAGGATTTTG 58.920 41.667 0.00 0.00 0.00 2.44
1562 1721 4.749048 AGGAAAGAGGGAAGGATTTTGT 57.251 40.909 0.00 0.00 0.00 2.83
1563 1722 5.079998 AGGAAAGAGGGAAGGATTTTGTT 57.920 39.130 0.00 0.00 0.00 2.83
1565 1724 5.540337 AGGAAAGAGGGAAGGATTTTGTTTC 59.460 40.000 0.00 0.00 0.00 2.78
1567 1726 6.719829 GGAAAGAGGGAAGGATTTTGTTTCTA 59.280 38.462 0.00 0.00 0.00 2.10
1598 1899 0.730840 GAACGAACCGGCCCAATTAG 59.269 55.000 0.00 0.00 0.00 1.73
1662 1981 1.202132 CCAACGCGAGAAGAGAGAGAG 60.202 57.143 15.93 0.00 0.00 3.20
1663 1982 1.735018 CAACGCGAGAAGAGAGAGAGA 59.265 52.381 15.93 0.00 0.00 3.10
1664 1983 1.651987 ACGCGAGAAGAGAGAGAGAG 58.348 55.000 15.93 0.00 0.00 3.20
1666 1985 1.860950 CGCGAGAAGAGAGAGAGAGAG 59.139 57.143 0.00 0.00 0.00 3.20
1667 1986 2.481276 CGCGAGAAGAGAGAGAGAGAGA 60.481 54.545 0.00 0.00 0.00 3.10
1668 1987 3.733337 GCGAGAAGAGAGAGAGAGAGAT 58.267 50.000 0.00 0.00 0.00 2.75
1669 1988 4.130118 GCGAGAAGAGAGAGAGAGAGATT 58.870 47.826 0.00 0.00 0.00 2.40
1670 1989 5.297547 GCGAGAAGAGAGAGAGAGAGATTA 58.702 45.833 0.00 0.00 0.00 1.75
1671 1990 5.758296 GCGAGAAGAGAGAGAGAGAGATTAA 59.242 44.000 0.00 0.00 0.00 1.40
1672 1991 6.292919 GCGAGAAGAGAGAGAGAGAGATTAAC 60.293 46.154 0.00 0.00 0.00 2.01
1673 1992 6.202954 CGAGAAGAGAGAGAGAGAGATTAACC 59.797 46.154 0.00 0.00 0.00 2.85
1674 1993 7.213178 AGAAGAGAGAGAGAGAGATTAACCT 57.787 40.000 0.00 0.00 0.00 3.50
1675 1994 7.643123 AGAAGAGAGAGAGAGAGATTAACCTT 58.357 38.462 0.00 0.00 0.00 3.50
1676 1995 8.778059 AGAAGAGAGAGAGAGAGATTAACCTTA 58.222 37.037 0.00 0.00 0.00 2.69
1677 1996 9.403583 GAAGAGAGAGAGAGAGATTAACCTTAA 57.596 37.037 0.00 0.00 0.00 1.85
1678 1997 8.747538 AGAGAGAGAGAGAGATTAACCTTAAC 57.252 38.462 0.00 0.00 0.00 2.01
1679 1998 7.778382 AGAGAGAGAGAGAGATTAACCTTAACC 59.222 40.741 0.00 0.00 0.00 2.85
1680 1999 7.648770 AGAGAGAGAGAGATTAACCTTAACCT 58.351 38.462 0.00 0.00 0.00 3.50
1681 2000 8.119891 AGAGAGAGAGAGATTAACCTTAACCTT 58.880 37.037 0.00 0.00 0.00 3.50
1682 2001 9.411189 GAGAGAGAGAGATTAACCTTAACCTTA 57.589 37.037 0.00 0.00 0.00 2.69
1683 2002 9.771140 AGAGAGAGAGATTAACCTTAACCTTAA 57.229 33.333 0.00 0.00 0.00 1.85
1684 2003 9.806203 GAGAGAGAGATTAACCTTAACCTTAAC 57.194 37.037 0.00 0.00 0.00 2.01
1685 2004 8.760735 AGAGAGAGATTAACCTTAACCTTAACC 58.239 37.037 0.00 0.00 0.00 2.85
1686 2005 7.859540 AGAGAGATTAACCTTAACCTTAACCC 58.140 38.462 0.00 0.00 0.00 4.11
1687 2006 7.683322 AGAGAGATTAACCTTAACCTTAACCCT 59.317 37.037 0.00 0.00 0.00 4.34
1688 2007 8.922229 AGAGATTAACCTTAACCTTAACCCTA 57.078 34.615 0.00 0.00 0.00 3.53
1689 2008 8.990203 AGAGATTAACCTTAACCTTAACCCTAG 58.010 37.037 0.00 0.00 0.00 3.02
1690 2009 7.571919 AGATTAACCTTAACCTTAACCCTAGC 58.428 38.462 0.00 0.00 0.00 3.42
1695 2014 4.202336 CCTTAACCTTAACCCTAGCCTAGC 60.202 50.000 0.00 0.00 0.00 3.42
1698 2017 1.057471 CTTAACCCTAGCCTAGCCCC 58.943 60.000 0.00 0.00 0.00 5.80
1700 2019 0.105142 TAACCCTAGCCTAGCCCCTG 60.105 60.000 0.00 0.00 0.00 4.45
1831 2177 1.599606 CCCCGACAGACCACAGAGAG 61.600 65.000 0.00 0.00 0.00 3.20
1854 2201 6.880484 AGAAAAATAAACCCGGTGAGTTTTT 58.120 32.000 11.77 14.68 38.37 1.94
1859 2206 1.137697 ACCCGGTGAGTTTTTCTCCT 58.862 50.000 0.00 0.00 42.12 3.69
1867 2214 5.234752 GGTGAGTTTTTCTCCTCTCTTCTC 58.765 45.833 0.00 0.00 42.12 2.87
1869 2216 4.284746 TGAGTTTTTCTCCTCTCTTCTCCC 59.715 45.833 0.00 0.00 42.12 4.30
1892 2254 1.228510 CCCCATTTGCCTCTCCCTC 59.771 63.158 0.00 0.00 0.00 4.30
1919 2281 2.018542 TCGCCTGGTTTAATTCCTCG 57.981 50.000 0.00 0.00 0.00 4.63
1923 2285 1.677820 CCTGGTTTAATTCCTCGCCGT 60.678 52.381 0.00 0.00 0.00 5.68
1927 2289 1.062148 GTTTAATTCCTCGCCGTCTGC 59.938 52.381 0.00 0.00 0.00 4.26
1975 2340 5.187621 AGTTTTCGGGGATTAATTCCTCA 57.812 39.130 12.74 0.00 46.61 3.86
1976 2341 4.948004 AGTTTTCGGGGATTAATTCCTCAC 59.052 41.667 12.74 3.15 46.61 3.51
1993 2358 0.244721 CACTGACTGACGATGGCTGA 59.755 55.000 0.00 0.00 0.00 4.26
2001 2366 2.315781 GACGATGGCTGATGCAGGGA 62.316 60.000 0.00 0.00 41.91 4.20
2009 2374 3.092511 GATGCAGGGAGGGAGGCA 61.093 66.667 0.00 0.00 41.00 4.75
2106 2471 4.176851 GCGGAGGAGGACGACGAC 62.177 72.222 0.00 0.00 0.00 4.34
2109 2474 2.462782 GGAGGAGGACGACGACGAG 61.463 68.421 15.32 0.00 42.66 4.18
2526 2903 2.687200 CCCATCCACGTCCTCCCA 60.687 66.667 0.00 0.00 0.00 4.37
2651 3028 2.358003 GCGTGCTCCTGCTTCTGT 60.358 61.111 0.00 0.00 40.48 3.41
2652 3029 2.386660 GCGTGCTCCTGCTTCTGTC 61.387 63.158 0.00 0.00 40.48 3.51
2721 3101 2.575993 CAGCCTCCTCACCAGACG 59.424 66.667 0.00 0.00 0.00 4.18
2733 3113 1.522355 CCAGACGATCATGGCGCTT 60.522 57.895 7.64 0.00 0.00 4.68
2759 3139 4.943252 AGCAACAGCACTGCCGCT 62.943 61.111 8.22 8.22 45.21 5.52
2784 3164 3.333189 CATGTCGATCCGGCTGCG 61.333 66.667 0.00 0.00 30.55 5.18
2827 3207 0.038744 CATGGCTGTTGGGAGGTTCT 59.961 55.000 0.00 0.00 0.00 3.01
2835 3215 4.848357 CTGTTGGGAGGTTCTTGTATGAT 58.152 43.478 0.00 0.00 0.00 2.45
2892 3272 4.498520 CAGCCGATGGTCGACGCT 62.499 66.667 9.92 9.30 43.74 5.07
2896 3276 0.874607 GCCGATGGTCGACGCTATTT 60.875 55.000 9.92 0.00 43.74 1.40
2898 3278 1.129326 CGATGGTCGACGCTATTTCC 58.871 55.000 9.92 0.00 43.74 3.13
2916 3296 1.695597 CTCCATGGGAGGGAAGCCT 60.696 63.158 13.02 0.00 45.43 4.58
2949 3329 3.869272 CATGACTTCCGCGGCTGC 61.869 66.667 23.51 7.70 37.91 5.25
2969 3349 0.603569 GTCCTGAAGAAGTCGCTGGA 59.396 55.000 0.00 0.00 0.00 3.86
2977 3357 1.620819 AGAAGTCGCTGGATGAAGTGT 59.379 47.619 0.00 0.00 0.00 3.55
2988 3368 2.094182 GGATGAAGTGTCGGCTCAGTTA 60.094 50.000 0.00 0.00 32.07 2.24
3012 3392 2.344093 ACTACAAGGGGTCATGGACT 57.656 50.000 0.00 0.00 32.47 3.85
3120 3500 3.305335 GCACCATGTTTCTGAAATCGGTT 60.305 43.478 14.60 0.00 0.00 4.44
3123 3503 4.023193 ACCATGTTTCTGAAATCGGTTGAC 60.023 41.667 6.06 0.00 0.00 3.18
3150 3530 5.767269 ACAGATATCGTCACATCATCAGAC 58.233 41.667 0.00 0.00 0.00 3.51
3153 3533 1.912983 CGTCACATCATCAGACGCG 59.087 57.895 3.53 3.53 46.74 6.01
3154 3534 1.633171 GTCACATCATCAGACGCGC 59.367 57.895 5.73 0.00 0.00 6.86
3165 3545 1.008875 CAGACGCGCTGTTTGAGCTA 61.009 55.000 18.43 0.00 46.64 3.32
3174 3554 2.414825 GCTGTTTGAGCTACTGAAGAGC 59.585 50.000 0.00 0.00 45.21 4.09
3186 3566 2.064762 CTGAAGAGCGTTGTTGAGGAG 58.935 52.381 0.00 0.00 0.00 3.69
3222 3602 2.869801 TGTCGTCCAAGTGATCACAAAC 59.130 45.455 27.02 16.63 0.00 2.93
3276 3656 4.288626 AGGCTAGGTGAAACATTTCCTACA 59.711 41.667 2.00 0.00 39.98 2.74
3338 3718 3.489355 TGCTTCAAGATTTCAGCAAGGA 58.511 40.909 0.00 0.00 39.32 3.36
3342 3722 4.356405 TCAAGATTTCAGCAAGGAGACA 57.644 40.909 0.00 0.00 0.00 3.41
3489 3869 0.439985 CTGCCATGAACTTCGTGACG 59.560 55.000 11.93 0.00 35.46 4.35
3508 3888 4.209452 ACGCTGAAAAACATGTACAGTG 57.791 40.909 22.16 22.16 42.37 3.66
3532 3912 1.006281 AGGAGGATTTGCAAGCCATGA 59.994 47.619 18.96 0.00 40.13 3.07
3636 4016 3.731652 TTTTGGTCTTCATGTGCCTTG 57.268 42.857 0.00 0.00 0.00 3.61
3901 4281 8.783833 AATTGGAGATAACATATCGAATGAGG 57.216 34.615 12.53 0.00 30.96 3.86
4165 4551 1.026718 CCAACCTTCCACGCTCCATC 61.027 60.000 0.00 0.00 0.00 3.51
4205 4591 9.903682 AGTTTGTTTGATGATACTTTGATCTTG 57.096 29.630 0.00 0.00 0.00 3.02
4213 4599 9.889128 TGATGATACTTTGATCTTGACATGTTA 57.111 29.630 0.00 0.00 0.00 2.41
4297 4683 1.401670 GCAGTACGTGTCCTCAGTCAG 60.402 57.143 0.00 0.00 0.00 3.51
4302 4688 0.523966 CGTGTCCTCAGTCAGACCTC 59.476 60.000 0.00 0.00 31.76 3.85
4344 4730 2.875933 GGACACACATTCCTTTCGAACA 59.124 45.455 0.00 0.00 31.79 3.18
4427 4813 3.590824 GCAACCTGCGGCTACAAT 58.409 55.556 0.00 0.00 31.71 2.71
4636 5037 2.605823 GGATAGATCCGCACTGTTCTCG 60.606 54.545 0.00 0.00 37.19 4.04
4642 5043 2.741092 GCACTGTTCTCGGGACCA 59.259 61.111 0.00 0.00 0.00 4.02
4645 5046 1.837051 ACTGTTCTCGGGACCAGCA 60.837 57.895 10.14 0.00 35.74 4.41
4691 5092 2.443255 AGTCAACCATTCAACTGGACCT 59.557 45.455 0.00 0.00 39.73 3.85
4696 5097 2.283298 CCATTCAACTGGACCTCATCG 58.717 52.381 0.00 0.00 38.69 3.84
4790 5192 5.712917 GGGTAATGTTGAGGGTTAAACATGA 59.287 40.000 0.00 0.00 44.24 3.07
4849 5252 1.220749 CGCTTCCCGAGGAATCCAA 59.779 57.895 0.61 0.00 41.23 3.53
4884 5287 5.649395 ACGACAAAGATGATTCCAATGATGT 59.351 36.000 0.00 0.00 0.00 3.06
4896 5299 5.779241 TCCAATGATGTAGAGAAAACCCT 57.221 39.130 0.00 0.00 0.00 4.34
4898 5301 4.096984 CCAATGATGTAGAGAAAACCCTGC 59.903 45.833 0.00 0.00 0.00 4.85
4911 5314 2.515398 CCTGCCTGTGGGTGAACA 59.485 61.111 0.00 0.00 34.45 3.18
4958 5361 8.431910 ACCTGTAAACTAATGGAAGTAGAAGA 57.568 34.615 0.00 0.00 36.42 2.87
4962 5365 9.924650 TGTAAACTAATGGAAGTAGAAGAGAAC 57.075 33.333 0.00 0.00 36.42 3.01
4967 5370 4.792521 TGGAAGTAGAAGAGAACTGCTC 57.207 45.455 0.00 0.00 44.29 4.26
4994 5397 9.938280 GTGGTATATTTCCATGTAGCAGTTATA 57.062 33.333 3.27 0.00 35.77 0.98
5006 5410 8.902806 CATGTAGCAGTTATATGGAAGGAAAAA 58.097 33.333 0.00 0.00 29.82 1.94
5137 5570 5.798132 CAAGCAGCATACAAGGGATATAGA 58.202 41.667 0.00 0.00 0.00 1.98
5260 5706 4.651962 TGTCTTTGTCCGGTCATGGATATA 59.348 41.667 1.21 0.00 40.91 0.86
5313 5759 2.817258 AGTATGCAGCCGCTTTGTTTTA 59.183 40.909 0.00 0.00 39.64 1.52
5317 5765 2.159170 TGCAGCCGCTTTGTTTTAGTTT 60.159 40.909 0.00 0.00 39.64 2.66
5408 5859 4.608948 ACAGAAGAAGGTAGTTGGACTG 57.391 45.455 0.00 0.00 0.00 3.51
5441 5892 8.594881 AGGATATTATAGCAGAACAAAGAACG 57.405 34.615 0.00 0.00 0.00 3.95
5456 5907 1.765314 AGAACGCTAATCTGGAGCCAT 59.235 47.619 0.00 0.00 36.53 4.40
5487 5938 2.095461 TGTTGTAACAAGTTGCAGCCA 58.905 42.857 13.32 7.92 36.05 4.75
5498 5949 7.403312 ACAAGTTGCAGCCATTACATAAATA 57.597 32.000 1.81 0.00 0.00 1.40
5503 5954 7.862372 AGTTGCAGCCATTACATAAATAATTCG 59.138 33.333 0.00 0.00 0.00 3.34
5617 6068 2.884639 GCCACTTGTGAATACTTGTGGT 59.115 45.455 16.89 0.00 44.65 4.16
5668 6119 2.438434 CGCCCCGAAAGAAGCCAT 60.438 61.111 0.00 0.00 0.00 4.40
5698 6149 1.302993 GGCAGGGGAAAACGCTACA 60.303 57.895 0.00 0.00 40.92 2.74
5914 6365 1.678970 GGCAGGCCAACCGATCTTT 60.679 57.895 5.01 0.00 42.76 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 129 3.181461 ACCCATAGAAATCCTCTTCTGCG 60.181 47.826 0.00 0.00 36.34 5.18
181 189 9.654663 CCCCAGAATAATATAGTACTAGTTTGC 57.345 37.037 8.85 0.00 0.00 3.68
186 194 9.357161 CCTAGCCCCAGAATAATATAGTACTAG 57.643 40.741 8.85 0.00 0.00 2.57
192 200 9.981460 AAAATTCCTAGCCCCAGAATAATATAG 57.019 33.333 0.00 0.00 30.21 1.31
228 236 0.804989 GAGGCCCATTTCAGTTCACG 59.195 55.000 0.00 0.00 0.00 4.35
243 251 0.326264 ATCAACCACTGGTCAGAGGC 59.674 55.000 13.12 0.00 42.03 4.70
244 252 1.625315 TGATCAACCACTGGTCAGAGG 59.375 52.381 11.90 11.90 40.41 3.69
280 288 1.066858 TGGCACTAACACTAGCAGAGC 60.067 52.381 0.00 0.00 0.00 4.09
322 333 1.450312 GGATCCACAGGCAGTTCCG 60.450 63.158 6.95 0.00 40.77 4.30
331 342 4.209538 TGCAATAGGAATTGGATCCACAG 58.790 43.478 15.91 0.00 42.39 3.66
335 346 5.859205 AAACTGCAATAGGAATTGGATCC 57.141 39.130 4.20 4.20 41.85 3.36
339 350 9.090692 CAGATTTAAAACTGCAATAGGAATTGG 57.909 33.333 11.93 0.00 42.39 3.16
359 370 4.348168 ACCATCTTATCTACCGGCAGATTT 59.652 41.667 22.21 2.59 36.63 2.17
538 550 4.163458 ACTTACTGACAGTTCTTCCCACAA 59.837 41.667 14.50 0.00 0.00 3.33
578 594 7.226325 TCCAAAAGTAAATTTTCCAATGTGCAG 59.774 33.333 0.00 0.00 39.11 4.41
588 604 8.289618 GCCATCCTTTTCCAAAAGTAAATTTTC 58.710 33.333 10.24 0.00 42.92 2.29
592 608 6.432403 TGCCATCCTTTTCCAAAAGTAAAT 57.568 33.333 10.24 0.27 42.92 1.40
608 624 1.468054 GCAAGTCGACATTTGCCATCC 60.468 52.381 24.50 4.43 42.88 3.51
622 639 9.804758 ACATTATAAGTGTACTTCTAGCAAGTC 57.195 33.333 9.83 5.04 37.40 3.01
635 655 5.496556 ACCAGCTGCAACATTATAAGTGTA 58.503 37.500 8.66 0.00 0.00 2.90
639 659 6.683974 AGTTACCAGCTGCAACATTATAAG 57.316 37.500 23.44 4.83 0.00 1.73
673 693 8.884124 ATAAGTATAATTTGCATGGGCTACAT 57.116 30.769 0.00 0.00 41.57 2.29
680 700 9.403110 GAGCAGAAATAAGTATAATTTGCATGG 57.597 33.333 8.67 0.00 0.00 3.66
707 727 2.182842 CCTCGCCAATAGCCTGCAC 61.183 63.158 0.00 0.00 38.78 4.57
710 730 0.179000 AACTCCTCGCCAATAGCCTG 59.821 55.000 0.00 0.00 38.78 4.85
715 735 1.626321 TCCACAAACTCCTCGCCAATA 59.374 47.619 0.00 0.00 0.00 1.90
770 790 1.519455 CATCGTCTTCCTCGGTGCC 60.519 63.158 0.00 0.00 32.86 5.01
847 867 2.035442 GTCGGAGCTGCTTGTTCCC 61.035 63.158 2.53 0.00 42.27 3.97
895 915 0.036577 GCTCCTTCTTCAGCTGCTCA 60.037 55.000 9.47 0.00 32.48 4.26
941 961 0.660488 GCCATCGTTGTGTGTTGTCA 59.340 50.000 0.00 0.00 0.00 3.58
943 963 1.098869 TTGCCATCGTTGTGTGTTGT 58.901 45.000 0.00 0.00 0.00 3.32
945 965 1.065401 CAGTTGCCATCGTTGTGTGTT 59.935 47.619 0.00 0.00 0.00 3.32
949 969 0.386352 CTGCAGTTGCCATCGTTGTG 60.386 55.000 5.25 0.00 41.18 3.33
952 972 2.956987 GCTGCAGTTGCCATCGTT 59.043 55.556 16.64 0.00 41.18 3.85
967 987 1.298667 GGTACCAATCACGGTGGCT 59.701 57.895 7.15 0.00 40.39 4.75
974 994 0.180406 ATCGGGCTGGTACCAATCAC 59.820 55.000 17.11 10.85 0.00 3.06
979 999 1.195442 TGAACATCGGGCTGGTACCA 61.195 55.000 15.39 15.39 0.00 3.25
987 1007 1.072331 ACCTCCATATGAACATCGGGC 59.928 52.381 3.65 0.00 0.00 6.13
1010 1030 2.815308 CCGATCCGGGAGAACAGG 59.185 66.667 0.00 0.00 44.15 4.00
1027 1053 1.758862 AGTACCTACCATTACCGCCAC 59.241 52.381 0.00 0.00 0.00 5.01
1073 1099 1.607178 TCGTCCCACCGGAAAGCTA 60.607 57.895 9.46 0.00 40.92 3.32
1124 1150 1.517257 CTGCAGCCCTACGAACGAG 60.517 63.158 0.00 0.00 0.00 4.18
1126 1152 0.949105 AAACTGCAGCCCTACGAACG 60.949 55.000 15.27 0.00 0.00 3.95
1149 1175 4.252878 GCCTTCTCTTCTTCTCTTTCCAG 58.747 47.826 0.00 0.00 0.00 3.86
1188 1216 8.852135 CCCCAAAATTCAAGTAAAACTGTACTA 58.148 33.333 0.00 0.00 33.05 1.82
1190 1218 7.436970 CACCCCAAAATTCAAGTAAAACTGTAC 59.563 37.037 0.00 0.00 0.00 2.90
1192 1220 6.155393 TCACCCCAAAATTCAAGTAAAACTGT 59.845 34.615 0.00 0.00 0.00 3.55
1193 1221 6.578023 TCACCCCAAAATTCAAGTAAAACTG 58.422 36.000 0.00 0.00 0.00 3.16
1194 1222 6.800072 TCACCCCAAAATTCAAGTAAAACT 57.200 33.333 0.00 0.00 0.00 2.66
1196 1224 7.051000 CCTTTCACCCCAAAATTCAAGTAAAA 58.949 34.615 0.00 0.00 0.00 1.52
1200 1228 4.294347 TCCTTTCACCCCAAAATTCAAGT 58.706 39.130 0.00 0.00 0.00 3.16
1204 1232 4.343814 TCAGTTCCTTTCACCCCAAAATTC 59.656 41.667 0.00 0.00 0.00 2.17
1205 1233 4.294347 TCAGTTCCTTTCACCCCAAAATT 58.706 39.130 0.00 0.00 0.00 1.82
1206 1234 3.922375 TCAGTTCCTTTCACCCCAAAAT 58.078 40.909 0.00 0.00 0.00 1.82
1210 1247 2.944129 CTTTCAGTTCCTTTCACCCCA 58.056 47.619 0.00 0.00 0.00 4.96
1221 1258 1.804748 CAGTTACCGGGCTTTCAGTTC 59.195 52.381 6.32 0.00 0.00 3.01
1223 1260 0.605589 GCAGTTACCGGGCTTTCAGT 60.606 55.000 6.32 0.00 0.00 3.41
1228 1265 0.249398 CTACTGCAGTTACCGGGCTT 59.751 55.000 27.06 0.00 0.00 4.35
1230 1267 1.153429 CCTACTGCAGTTACCGGGC 60.153 63.158 27.06 0.00 0.00 6.13
1237 1274 1.614317 GGAATGCCACCTACTGCAGTT 60.614 52.381 27.06 3.70 41.46 3.16
1239 1276 0.254178 AGGAATGCCACCTACTGCAG 59.746 55.000 13.48 13.48 41.46 4.41
1240 1277 0.035152 CAGGAATGCCACCTACTGCA 60.035 55.000 0.00 0.00 42.52 4.41
1241 1278 1.379642 GCAGGAATGCCACCTACTGC 61.380 60.000 0.00 0.00 43.50 4.40
1242 1279 1.091771 CGCAGGAATGCCACCTACTG 61.092 60.000 0.00 0.00 35.84 2.74
1243 1280 1.221840 CGCAGGAATGCCACCTACT 59.778 57.895 0.00 0.00 35.84 2.57
1266 1303 4.058124 TCATCCATGATTCCGTCGAAATC 58.942 43.478 0.00 0.00 34.40 2.17
1267 1304 4.071961 TCATCCATGATTCCGTCGAAAT 57.928 40.909 0.00 0.00 0.00 2.17
1277 1348 6.718454 GTGATTATGTCCCTTCATCCATGATT 59.282 38.462 0.00 0.00 36.56 2.57
1280 1351 5.240183 GTGTGATTATGTCCCTTCATCCATG 59.760 44.000 0.00 0.00 0.00 3.66
1286 1357 2.835156 TCGGTGTGATTATGTCCCTTCA 59.165 45.455 0.00 0.00 0.00 3.02
1288 1359 3.992943 TTCGGTGTGATTATGTCCCTT 57.007 42.857 0.00 0.00 0.00 3.95
1290 1361 3.869065 TCTTTCGGTGTGATTATGTCCC 58.131 45.455 0.00 0.00 0.00 4.46
1291 1362 4.201822 GCTTCTTTCGGTGTGATTATGTCC 60.202 45.833 0.00 0.00 0.00 4.02
1292 1363 4.391830 TGCTTCTTTCGGTGTGATTATGTC 59.608 41.667 0.00 0.00 0.00 3.06
1293 1364 4.323417 TGCTTCTTTCGGTGTGATTATGT 58.677 39.130 0.00 0.00 0.00 2.29
1295 1366 3.375299 GCTGCTTCTTTCGGTGTGATTAT 59.625 43.478 0.00 0.00 0.00 1.28
1296 1367 2.742053 GCTGCTTCTTTCGGTGTGATTA 59.258 45.455 0.00 0.00 0.00 1.75
1299 1370 1.221466 CGCTGCTTCTTTCGGTGTGA 61.221 55.000 0.00 0.00 0.00 3.58
1300 1371 1.205064 CGCTGCTTCTTTCGGTGTG 59.795 57.895 0.00 0.00 0.00 3.82
1301 1372 1.961277 CCGCTGCTTCTTTCGGTGT 60.961 57.895 0.00 0.00 37.33 4.16
1302 1373 2.863153 CCGCTGCTTCTTTCGGTG 59.137 61.111 0.00 0.00 37.33 4.94
1304 1375 1.497722 GAACCGCTGCTTCTTTCGG 59.502 57.895 0.00 0.00 46.61 4.30
1305 1376 1.227999 TGGAACCGCTGCTTCTTTCG 61.228 55.000 0.00 0.00 0.00 3.46
1306 1377 1.168714 ATGGAACCGCTGCTTCTTTC 58.831 50.000 0.00 0.00 0.00 2.62
1307 1378 1.620822 AATGGAACCGCTGCTTCTTT 58.379 45.000 0.00 0.00 0.00 2.52
1308 1379 1.620822 AAATGGAACCGCTGCTTCTT 58.379 45.000 0.00 0.00 0.00 2.52
1309 1380 1.620822 AAAATGGAACCGCTGCTTCT 58.379 45.000 0.00 0.00 0.00 2.85
1310 1381 2.029918 AGAAAAATGGAACCGCTGCTTC 60.030 45.455 0.00 0.00 0.00 3.86
1311 1382 1.963515 AGAAAAATGGAACCGCTGCTT 59.036 42.857 0.00 0.00 0.00 3.91
1313 1384 2.438868 AAGAAAAATGGAACCGCTGC 57.561 45.000 0.00 0.00 0.00 5.25
1314 1385 4.808364 TCAAAAAGAAAAATGGAACCGCTG 59.192 37.500 0.00 0.00 0.00 5.18
1315 1386 4.808895 GTCAAAAAGAAAAATGGAACCGCT 59.191 37.500 0.00 0.00 0.00 5.52
1316 1387 4.025229 GGTCAAAAAGAAAAATGGAACCGC 60.025 41.667 0.00 0.00 0.00 5.68
1317 1388 4.208253 CGGTCAAAAAGAAAAATGGAACCG 59.792 41.667 0.00 0.00 0.00 4.44
1318 1389 4.509970 CCGGTCAAAAAGAAAAATGGAACC 59.490 41.667 0.00 0.00 0.00 3.62
1319 1390 4.509970 CCCGGTCAAAAAGAAAAATGGAAC 59.490 41.667 0.00 0.00 0.00 3.62
1320 1391 4.162509 ACCCGGTCAAAAAGAAAAATGGAA 59.837 37.500 0.00 0.00 0.00 3.53
1321 1392 3.707102 ACCCGGTCAAAAAGAAAAATGGA 59.293 39.130 0.00 0.00 0.00 3.41
1323 1394 4.688021 TGACCCGGTCAAAAAGAAAAATG 58.312 39.130 18.34 0.00 39.78 2.32
1324 1395 4.739436 GCTGACCCGGTCAAAAAGAAAAAT 60.739 41.667 20.81 0.00 42.26 1.82
1325 1396 3.429684 GCTGACCCGGTCAAAAAGAAAAA 60.430 43.478 20.81 0.00 42.26 1.94
1326 1397 2.100087 GCTGACCCGGTCAAAAAGAAAA 59.900 45.455 20.81 0.00 42.26 2.29
1327 1398 1.679153 GCTGACCCGGTCAAAAAGAAA 59.321 47.619 20.81 0.00 42.26 2.52
1328 1399 1.314730 GCTGACCCGGTCAAAAAGAA 58.685 50.000 20.81 0.00 42.26 2.52
1329 1400 0.882927 CGCTGACCCGGTCAAAAAGA 60.883 55.000 20.81 0.00 42.26 2.52
1330 1401 1.574428 CGCTGACCCGGTCAAAAAG 59.426 57.895 20.81 10.51 42.26 2.27
1331 1402 1.894756 CCGCTGACCCGGTCAAAAA 60.895 57.895 20.81 0.00 42.26 1.94
1332 1403 2.281208 CCGCTGACCCGGTCAAAA 60.281 61.111 20.81 0.00 42.26 2.44
1339 1410 1.644786 GAAATGGAACCGCTGACCCG 61.645 60.000 0.00 0.00 0.00 5.28
1340 1411 1.644786 CGAAATGGAACCGCTGACCC 61.645 60.000 0.00 0.00 0.00 4.46
1341 1412 0.953960 ACGAAATGGAACCGCTGACC 60.954 55.000 0.00 0.00 0.00 4.02
1342 1413 0.872388 AACGAAATGGAACCGCTGAC 59.128 50.000 0.00 0.00 0.00 3.51
1343 1414 1.265635 CAAACGAAATGGAACCGCTGA 59.734 47.619 0.00 0.00 0.00 4.26
1344 1415 1.001815 ACAAACGAAATGGAACCGCTG 60.002 47.619 0.00 0.00 0.00 5.18
1345 1416 1.001815 CACAAACGAAATGGAACCGCT 60.002 47.619 0.00 0.00 0.00 5.52
1346 1417 1.002251 TCACAAACGAAATGGAACCGC 60.002 47.619 0.00 0.00 0.00 5.68
1347 1418 2.546368 TCTCACAAACGAAATGGAACCG 59.454 45.455 0.00 0.00 0.00 4.44
1348 1419 3.813166 TCTCTCACAAACGAAATGGAACC 59.187 43.478 0.00 0.00 0.00 3.62
1349 1420 5.418310 TTCTCTCACAAACGAAATGGAAC 57.582 39.130 0.00 0.00 0.00 3.62
1350 1421 5.530915 ACATTCTCTCACAAACGAAATGGAA 59.469 36.000 0.00 0.00 0.00 3.53
1351 1422 5.063204 ACATTCTCTCACAAACGAAATGGA 58.937 37.500 0.00 0.00 0.00 3.41
1352 1423 5.362556 ACATTCTCTCACAAACGAAATGG 57.637 39.130 0.00 0.00 0.00 3.16
1353 1424 6.307155 GGTACATTCTCTCACAAACGAAATG 58.693 40.000 0.00 0.00 0.00 2.32
1354 1425 5.411669 GGGTACATTCTCTCACAAACGAAAT 59.588 40.000 0.00 0.00 0.00 2.17
1355 1426 4.753107 GGGTACATTCTCTCACAAACGAAA 59.247 41.667 0.00 0.00 0.00 3.46
1356 1427 4.039973 AGGGTACATTCTCTCACAAACGAA 59.960 41.667 0.00 0.00 0.00 3.85
1357 1428 3.576982 AGGGTACATTCTCTCACAAACGA 59.423 43.478 0.00 0.00 0.00 3.85
1358 1429 3.926616 AGGGTACATTCTCTCACAAACG 58.073 45.455 0.00 0.00 0.00 3.60
1359 1430 4.254492 GGAGGGTACATTCTCTCACAAAC 58.746 47.826 0.00 0.00 0.00 2.93
1360 1431 3.056107 CGGAGGGTACATTCTCTCACAAA 60.056 47.826 0.00 0.00 0.00 2.83
1361 1432 2.496070 CGGAGGGTACATTCTCTCACAA 59.504 50.000 0.00 0.00 0.00 3.33
1362 1433 2.100197 CGGAGGGTACATTCTCTCACA 58.900 52.381 0.00 0.00 0.00 3.58
1363 1434 2.099427 GACGGAGGGTACATTCTCTCAC 59.901 54.545 0.00 0.00 0.00 3.51
1364 1435 2.376109 GACGGAGGGTACATTCTCTCA 58.624 52.381 0.00 0.00 0.00 3.27
1365 1436 1.682323 GGACGGAGGGTACATTCTCTC 59.318 57.143 0.00 0.00 0.00 3.20
1366 1437 1.777941 GGACGGAGGGTACATTCTCT 58.222 55.000 0.00 0.00 0.00 3.10
1367 1438 0.384669 CGGACGGAGGGTACATTCTC 59.615 60.000 0.00 0.00 0.00 2.87
1368 1439 0.324091 ACGGACGGAGGGTACATTCT 60.324 55.000 0.00 0.00 0.00 2.40
1369 1440 0.101939 GACGGACGGAGGGTACATTC 59.898 60.000 0.00 0.00 0.00 2.67
1370 1441 1.325476 GGACGGACGGAGGGTACATT 61.325 60.000 0.00 0.00 0.00 2.71
1371 1442 1.755783 GGACGGACGGAGGGTACAT 60.756 63.158 0.00 0.00 0.00 2.29
1372 1443 2.361610 GGACGGACGGAGGGTACA 60.362 66.667 0.00 0.00 0.00 2.90
1373 1444 3.512516 CGGACGGACGGAGGGTAC 61.513 72.222 0.00 0.00 0.00 3.34
1374 1445 2.762969 TTTCGGACGGACGGAGGGTA 62.763 60.000 0.00 0.00 0.00 3.69
1375 1446 4.666253 TTCGGACGGACGGAGGGT 62.666 66.667 0.00 0.00 0.00 4.34
1376 1447 2.234913 ATTTTCGGACGGACGGAGGG 62.235 60.000 0.00 0.00 0.00 4.30
1377 1448 0.457035 TATTTTCGGACGGACGGAGG 59.543 55.000 0.00 0.00 0.00 4.30
1382 1453 4.737353 AAACAAGTATTTTCGGACGGAC 57.263 40.909 0.00 0.00 0.00 4.79
1457 1575 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
1464 1582 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1468 1586 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1469 1587 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1470 1588 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1476 1594 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
1477 1595 1.236628 CATACTACTCCCTCCGTCCG 58.763 60.000 0.00 0.00 0.00 4.79
1479 1597 2.879646 CAGACATACTACTCCCTCCGTC 59.120 54.545 0.00 0.00 0.00 4.79
1495 1613 2.287547 GCACGCCATTTTTCTTCAGACA 60.288 45.455 0.00 0.00 0.00 3.41
1496 1614 2.319472 GCACGCCATTTTTCTTCAGAC 58.681 47.619 0.00 0.00 0.00 3.51
1497 1615 1.269448 GGCACGCCATTTTTCTTCAGA 59.731 47.619 2.36 0.00 35.81 3.27
1498 1616 1.669795 GGGCACGCCATTTTTCTTCAG 60.670 52.381 10.83 0.00 37.98 3.02
1500 1618 0.316841 TGGGCACGCCATTTTTCTTC 59.683 50.000 10.83 0.00 37.98 2.87
1501 1619 0.755686 TTGGGCACGCCATTTTTCTT 59.244 45.000 10.83 0.00 37.98 2.52
1504 1622 2.694213 GTAATTGGGCACGCCATTTTT 58.306 42.857 10.83 0.63 37.98 1.94
1505 1623 1.403514 CGTAATTGGGCACGCCATTTT 60.404 47.619 10.83 2.39 37.98 1.82
1509 1627 2.748251 CCGTAATTGGGCACGCCA 60.748 61.111 10.83 0.00 36.85 5.69
1510 1628 3.514362 CCCGTAATTGGGCACGCC 61.514 66.667 0.00 0.00 43.70 5.68
1517 1635 2.081462 GTTCAGTCACCCCGTAATTGG 58.919 52.381 0.00 0.00 0.00 3.16
1518 1636 2.742053 CAGTTCAGTCACCCCGTAATTG 59.258 50.000 0.00 0.00 0.00 2.32
1519 1637 2.635915 TCAGTTCAGTCACCCCGTAATT 59.364 45.455 0.00 0.00 0.00 1.40
1520 1638 2.253610 TCAGTTCAGTCACCCCGTAAT 58.746 47.619 0.00 0.00 0.00 1.89
1521 1639 1.707106 TCAGTTCAGTCACCCCGTAA 58.293 50.000 0.00 0.00 0.00 3.18
1524 1642 0.320771 CCTTCAGTTCAGTCACCCCG 60.321 60.000 0.00 0.00 0.00 5.73
1526 1644 2.930826 TTCCTTCAGTTCAGTCACCC 57.069 50.000 0.00 0.00 0.00 4.61
1527 1645 4.061596 CTCTTTCCTTCAGTTCAGTCACC 58.938 47.826 0.00 0.00 0.00 4.02
1528 1646 4.061596 CCTCTTTCCTTCAGTTCAGTCAC 58.938 47.826 0.00 0.00 0.00 3.67
1530 1648 3.325135 TCCCTCTTTCCTTCAGTTCAGTC 59.675 47.826 0.00 0.00 0.00 3.51
1531 1649 3.318313 TCCCTCTTTCCTTCAGTTCAGT 58.682 45.455 0.00 0.00 0.00 3.41
1534 1652 3.328050 TCCTTCCCTCTTTCCTTCAGTTC 59.672 47.826 0.00 0.00 0.00 3.01
1542 1701 5.540337 AGAAACAAAATCCTTCCCTCTTTCC 59.460 40.000 0.00 0.00 0.00 3.13
1545 1704 8.727100 AAATAGAAACAAAATCCTTCCCTCTT 57.273 30.769 0.00 0.00 0.00 2.85
1557 1716 8.366666 CGTTCGTCAACAAAAATAGAAACAAAA 58.633 29.630 0.00 0.00 32.14 2.44
1558 1717 7.749570 TCGTTCGTCAACAAAAATAGAAACAAA 59.250 29.630 0.00 0.00 32.14 2.83
1559 1718 7.242079 TCGTTCGTCAACAAAAATAGAAACAA 58.758 30.769 0.00 0.00 32.14 2.83
1561 1720 7.305019 GGTTCGTTCGTCAACAAAAATAGAAAC 60.305 37.037 0.00 0.00 32.14 2.78
1562 1721 6.687958 GGTTCGTTCGTCAACAAAAATAGAAA 59.312 34.615 0.00 0.00 32.14 2.52
1563 1722 6.193761 GGTTCGTTCGTCAACAAAAATAGAA 58.806 36.000 0.00 0.00 32.14 2.10
1565 1724 4.605594 CGGTTCGTTCGTCAACAAAAATAG 59.394 41.667 0.00 0.00 32.14 1.73
1567 1726 3.356145 CGGTTCGTTCGTCAACAAAAAT 58.644 40.909 0.00 0.00 32.14 1.82
1576 1877 4.668118 TGGGCCGGTTCGTTCGTC 62.668 66.667 1.90 0.00 0.00 4.20
1628 1945 1.671901 CGTTGGCTTGGTTGGTTGGT 61.672 55.000 0.00 0.00 0.00 3.67
1662 1981 7.859540 AGGGTTAAGGTTAAGGTTAATCTCTC 58.140 38.462 0.00 0.00 33.14 3.20
1663 1982 7.825983 AGGGTTAAGGTTAAGGTTAATCTCT 57.174 36.000 0.00 0.00 33.14 3.10
1664 1983 7.714377 GCTAGGGTTAAGGTTAAGGTTAATCTC 59.286 40.741 0.00 0.00 33.14 2.75
1666 1985 6.769822 GGCTAGGGTTAAGGTTAAGGTTAATC 59.230 42.308 0.00 0.00 0.00 1.75
1667 1986 6.449368 AGGCTAGGGTTAAGGTTAAGGTTAAT 59.551 38.462 0.00 0.00 0.00 1.40
1668 1987 5.792188 AGGCTAGGGTTAAGGTTAAGGTTAA 59.208 40.000 0.00 0.00 0.00 2.01
1669 1988 5.353125 AGGCTAGGGTTAAGGTTAAGGTTA 58.647 41.667 0.00 0.00 0.00 2.85
1670 1989 4.181520 AGGCTAGGGTTAAGGTTAAGGTT 58.818 43.478 0.00 0.00 0.00 3.50
1671 1990 3.811842 AGGCTAGGGTTAAGGTTAAGGT 58.188 45.455 0.00 0.00 0.00 3.50
1672 1991 4.202336 GCTAGGCTAGGGTTAAGGTTAAGG 60.202 50.000 22.40 0.00 0.00 2.69
1673 1992 4.202336 GGCTAGGCTAGGGTTAAGGTTAAG 60.202 50.000 22.40 0.00 0.00 1.85
1674 1993 3.713248 GGCTAGGCTAGGGTTAAGGTTAA 59.287 47.826 22.40 0.00 0.00 2.01
1675 1994 3.311990 GGCTAGGCTAGGGTTAAGGTTA 58.688 50.000 22.40 0.00 0.00 2.85
1676 1995 2.125233 GGCTAGGCTAGGGTTAAGGTT 58.875 52.381 22.40 0.00 0.00 3.50
1677 1996 1.695016 GGGCTAGGCTAGGGTTAAGGT 60.695 57.143 22.40 0.00 0.00 3.50
1678 1997 1.057471 GGGCTAGGCTAGGGTTAAGG 58.943 60.000 22.40 0.00 0.00 2.69
1679 1998 1.057471 GGGGCTAGGCTAGGGTTAAG 58.943 60.000 22.40 0.00 0.00 1.85
1680 1999 0.646055 AGGGGCTAGGCTAGGGTTAA 59.354 55.000 22.40 0.00 0.00 2.01
1681 2000 0.105142 CAGGGGCTAGGCTAGGGTTA 60.105 60.000 22.40 0.00 0.00 2.85
1682 2001 1.384643 CAGGGGCTAGGCTAGGGTT 60.385 63.158 22.40 0.00 0.00 4.11
1683 2002 2.287251 CAGGGGCTAGGCTAGGGT 59.713 66.667 22.40 0.00 0.00 4.34
1684 2003 2.527875 CCAGGGGCTAGGCTAGGG 60.528 72.222 22.40 11.04 0.00 3.53
1685 2004 1.839296 GTCCAGGGGCTAGGCTAGG 60.839 68.421 22.40 14.78 0.00 3.02
1686 2005 1.839296 GGTCCAGGGGCTAGGCTAG 60.839 68.421 17.33 17.33 0.00 3.42
1687 2006 2.285868 GGTCCAGGGGCTAGGCTA 59.714 66.667 16.80 0.00 0.00 3.93
1688 2007 4.825679 GGGTCCAGGGGCTAGGCT 62.826 72.222 16.80 0.00 0.00 4.58
1690 2009 3.739080 ATGGGGTCCAGGGGCTAGG 62.739 68.421 0.00 0.00 36.75 3.02
1695 2014 4.815973 TCCGATGGGGTCCAGGGG 62.816 72.222 0.00 4.09 36.75 4.79
1698 2017 2.590092 GGTTCCGATGGGGTCCAG 59.410 66.667 0.00 0.00 36.75 3.86
1700 2019 2.662070 TTCGGTTCCGATGGGGTCC 61.662 63.158 14.70 0.00 38.30 4.46
1831 2177 6.982141 AGAAAAACTCACCGGGTTTATTTTTC 59.018 34.615 26.36 26.36 41.51 2.29
1869 2216 2.280079 GAGGCAAATGGGGAGGGG 59.720 66.667 0.00 0.00 0.00 4.79
1873 2220 1.230281 AGGGAGAGGCAAATGGGGA 60.230 57.895 0.00 0.00 0.00 4.81
1878 2225 0.035056 CAACCGAGGGAGAGGCAAAT 60.035 55.000 0.00 0.00 0.00 2.32
1879 2226 1.374947 CAACCGAGGGAGAGGCAAA 59.625 57.895 0.00 0.00 0.00 3.68
1880 2227 2.592993 CCAACCGAGGGAGAGGCAA 61.593 63.158 0.00 0.00 0.00 4.52
1881 2228 3.003173 CCAACCGAGGGAGAGGCA 61.003 66.667 0.00 0.00 0.00 4.75
1892 2254 0.885596 TAAACCAGGCGAACCAACCG 60.886 55.000 0.00 0.00 39.06 4.44
1923 2285 4.804420 AGCTGATCCCCGGGCAGA 62.804 66.667 25.68 15.48 0.00 4.26
1927 2289 3.917760 GACGAGCTGATCCCCGGG 61.918 72.222 15.80 15.80 0.00 5.73
1936 2301 1.313812 ACTAGGTTCCGGACGAGCTG 61.314 60.000 16.39 9.66 0.00 4.24
1975 2340 1.134877 CATCAGCCATCGTCAGTCAGT 60.135 52.381 0.00 0.00 0.00 3.41
1976 2341 1.568606 CATCAGCCATCGTCAGTCAG 58.431 55.000 0.00 0.00 0.00 3.51
1993 2358 3.095163 CTGCCTCCCTCCCTGCAT 61.095 66.667 0.00 0.00 32.53 3.96
2136 2501 4.599500 ACCACCACCTCCAGCCCT 62.599 66.667 0.00 0.00 0.00 5.19
2229 2594 2.027625 GCCGCAGTAGACGCACTTT 61.028 57.895 0.00 0.00 0.00 2.66
2637 3014 2.947532 CGGGACAGAAGCAGGAGCA 61.948 63.158 0.00 0.00 45.49 4.26
2670 3047 1.382420 AGTAGCAGGCTGGAGAGGG 60.382 63.158 17.64 0.00 0.00 4.30
2721 3101 4.937781 GCATCAAGCGCCATGATC 57.062 55.556 19.99 12.78 35.38 2.92
2759 3139 0.460109 CGGATCGACATGCCTTGACA 60.460 55.000 0.00 0.00 0.00 3.58
2799 3179 0.320073 CAACAGCCATGCAAACCTGG 60.320 55.000 13.25 7.59 35.53 4.45
2814 3194 4.588899 CATCATACAAGAACCTCCCAACA 58.411 43.478 0.00 0.00 0.00 3.33
2827 3207 1.029408 GGCACACCGGCATCATACAA 61.029 55.000 0.00 0.00 40.76 2.41
2928 3308 1.227556 GCCGCGGAAGTCATGGTAT 60.228 57.895 33.48 0.00 0.00 2.73
2949 3329 0.734253 CCAGCGACTTCTTCAGGACG 60.734 60.000 0.00 0.00 0.00 4.79
2952 3332 1.205655 TCATCCAGCGACTTCTTCAGG 59.794 52.381 0.00 0.00 0.00 3.86
2969 3349 2.826128 TCTAACTGAGCCGACACTTCAT 59.174 45.455 0.00 0.00 0.00 2.57
2977 3357 4.212143 TGTAGTACTCTAACTGAGCCGA 57.788 45.455 0.00 0.00 46.41 5.54
2988 3368 3.012502 TCCATGACCCCTTGTAGTACTCT 59.987 47.826 0.00 0.00 0.00 3.24
3099 3479 4.023279 TCAACCGATTTCAGAAACATGGTG 60.023 41.667 13.58 7.41 0.00 4.17
3123 3503 3.115554 TGATGTGACGATATCTGTTGCG 58.884 45.455 0.34 0.00 0.00 4.85
3154 3534 2.665537 CGCTCTTCAGTAGCTCAAACAG 59.334 50.000 0.00 0.00 37.85 3.16
3165 3545 1.412710 TCCTCAACAACGCTCTTCAGT 59.587 47.619 0.00 0.00 0.00 3.41
3174 3554 1.070134 TCTCCAACCTCCTCAACAACG 59.930 52.381 0.00 0.00 0.00 4.10
3186 3566 3.188667 GGACGACATTTTTCTCTCCAACC 59.811 47.826 0.00 0.00 0.00 3.77
3222 3602 2.355132 GGCTGCATGAATCTCAGAGTTG 59.645 50.000 0.50 0.00 0.00 3.16
3249 3629 6.311735 AGGAAATGTTTCACCTAGCCTTTTA 58.688 36.000 7.69 0.00 38.92 1.52
3276 3656 1.059098 TGCATGGAGACCAGAACAGT 58.941 50.000 0.00 0.00 36.75 3.55
3322 3702 3.119919 GCTGTCTCCTTGCTGAAATCTTG 60.120 47.826 0.00 0.00 0.00 3.02
3338 3718 6.682611 GCTTATGATCTCACTAACTGCTGTCT 60.683 42.308 0.00 0.00 0.00 3.41
3342 3722 5.604758 TGCTTATGATCTCACTAACTGCT 57.395 39.130 0.00 0.00 0.00 4.24
3474 3854 1.418373 TCAGCGTCACGAAGTTCATG 58.582 50.000 0.00 0.00 41.61 3.07
3489 3869 5.168526 TCACACTGTACATGTTTTTCAGC 57.831 39.130 2.30 0.00 0.00 4.26
3508 3888 1.203287 GGCTTGCAAATCCTCCTTCAC 59.797 52.381 0.00 0.00 0.00 3.18
3532 3912 5.190528 AGTGTACCCATTCATCTGAACTGAT 59.809 40.000 0.00 0.00 36.80 2.90
3636 4016 2.181521 TTCGGTGGCACGAACAACC 61.182 57.895 12.17 0.00 46.68 3.77
3815 4195 4.759096 GCGGTCGTTGCATGTGCC 62.759 66.667 2.07 0.00 41.18 5.01
3901 4281 5.121454 CACAGTCTAGCATTCCTGAGAAAAC 59.879 44.000 0.00 0.00 35.09 2.43
4165 4551 7.754069 TCAAACAAACTTGATGCTTTAACAG 57.246 32.000 0.00 0.00 30.31 3.16
4205 4591 8.315391 TCAGCTGCAAGATAATATAACATGTC 57.685 34.615 9.47 0.00 34.07 3.06
4213 4599 5.061853 CACCACTCAGCTGCAAGATAATAT 58.938 41.667 9.47 0.00 34.07 1.28
4255 4641 3.372954 CAAACGTGTTAAATTCGGGCAA 58.627 40.909 0.00 0.00 0.00 4.52
4286 4672 1.181786 CTGGAGGTCTGACTGAGGAC 58.818 60.000 7.85 0.00 0.00 3.85
4297 4683 1.153349 CCCTTTAGCGCTGGAGGTC 60.153 63.158 28.35 0.00 0.00 3.85
4302 4688 0.392998 ATCACACCCTTTAGCGCTGG 60.393 55.000 22.90 15.62 0.00 4.85
4344 4730 8.599624 AATATTCATTCTTTGGTCATGGAGTT 57.400 30.769 0.00 0.00 0.00 3.01
4427 4813 2.268107 ACGGGGATTTGGTTACCTGTA 58.732 47.619 2.07 0.00 40.66 2.74
4624 5025 2.432628 GGTCCCGAGAACAGTGCG 60.433 66.667 0.00 0.00 0.00 5.34
4636 5037 4.792804 GGCTGCTCTGCTGGTCCC 62.793 72.222 0.00 0.00 0.00 4.46
4642 5043 1.602888 CCAGTTTGGCTGCTCTGCT 60.603 57.895 0.00 0.00 43.71 4.24
4645 5046 0.323178 CCATCCAGTTTGGCTGCTCT 60.323 55.000 0.00 0.00 43.71 4.09
4741 5142 1.074951 AAACGGGAAGCAAGGAGGG 59.925 57.895 0.00 0.00 0.00 4.30
4790 5192 5.004922 TCGACTCCTGCAAACAAAATTTT 57.995 34.783 0.00 0.00 0.00 1.82
4849 5252 1.204704 TCTTTGTCGTCATCATCGGCT 59.795 47.619 0.00 0.00 33.90 5.52
4884 5287 1.351017 CCACAGGCAGGGTTTTCTCTA 59.649 52.381 0.00 0.00 0.00 2.43
4896 5299 0.033601 AACTTGTTCACCCACAGGCA 60.034 50.000 0.00 0.00 36.11 4.75
4898 5301 1.032014 CCAACTTGTTCACCCACAGG 58.968 55.000 0.00 0.00 40.04 4.00
4958 5361 4.161565 TGGAAATATACCACGAGCAGTTCT 59.838 41.667 0.00 0.00 32.03 3.01
4962 5365 4.380531 ACATGGAAATATACCACGAGCAG 58.619 43.478 0.00 0.00 40.36 4.24
4967 5370 5.297547 ACTGCTACATGGAAATATACCACG 58.702 41.667 0.00 0.00 40.36 4.94
5006 5410 6.859017 TCCTTTTGCTACTCGAAAACTTTTT 58.141 32.000 0.00 0.00 0.00 1.94
5010 5414 7.711339 CCTATATCCTTTTGCTACTCGAAAACT 59.289 37.037 0.00 0.00 0.00 2.66
5011 5415 7.494952 ACCTATATCCTTTTGCTACTCGAAAAC 59.505 37.037 0.00 0.00 0.00 2.43
5068 5473 7.889589 TCGAATATATCACAAGCATCGAAAT 57.110 32.000 0.00 0.00 35.42 2.17
5137 5570 5.239525 GTCTAAACCACAGAACAAGAAGCAT 59.760 40.000 0.00 0.00 0.00 3.79
5260 5706 6.628644 ATTAGGAGAAGCTCTGGTTTTAGT 57.371 37.500 0.00 0.00 0.00 2.24
5317 5765 9.554724 GATTATGTCGTGCAGAAAAGATAAAAA 57.445 29.630 0.00 0.00 31.56 1.94
5408 5859 7.093727 TGTTCTGCTATAATATCCTCAGCTACC 60.094 40.741 0.00 0.00 33.38 3.18
5441 5892 4.989279 TGAAAAATGGCTCCAGATTAGC 57.011 40.909 0.00 0.00 39.33 3.09
5498 5949 9.936759 ACACAATTTGGAAATATTTACCGAATT 57.063 25.926 23.07 23.07 44.01 2.17
5600 6051 4.516698 AGCTTCACCACAAGTATTCACAAG 59.483 41.667 0.00 0.00 0.00 3.16
5603 6054 4.065088 TGAGCTTCACCACAAGTATTCAC 58.935 43.478 0.00 0.00 0.00 3.18
5617 6068 0.606130 TTTGCCTCGCATGAGCTTCA 60.606 50.000 0.00 0.00 41.13 3.02
5668 6119 1.421346 CCCCTGCCATGCTCCTCATA 61.421 60.000 0.00 0.00 33.19 2.15
5698 6149 1.290009 GGACAAAATGCAGGCGCTT 59.710 52.632 7.64 0.00 39.64 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.