Multiple sequence alignment - TraesCS5A01G483600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G483600 chr5A 100.000 3381 0 0 1 3381 654610827 654614207 0.000000e+00 6244.0
1 TraesCS5A01G483600 chr5A 89.021 419 28 9 1111 1523 654564062 654564468 1.400000e-138 503.0
2 TraesCS5A01G483600 chr5A 88.747 391 30 8 1126 1514 654571556 654571934 1.840000e-127 466.0
3 TraesCS5A01G483600 chr5B 91.414 1782 117 18 876 2639 664016243 664018006 0.000000e+00 2410.0
4 TraesCS5A01G483600 chr5B 90.261 421 31 9 1113 1523 663800743 663801163 2.970000e-150 542.0
5 TraesCS5A01G483600 chr5B 84.135 561 57 24 969 1523 663922786 663923320 6.470000e-142 514.0
6 TraesCS5A01G483600 chr5B 89.681 407 36 4 1126 1530 663987883 663988285 6.470000e-142 514.0
7 TraesCS5A01G483600 chr5B 80.870 345 50 10 280 615 664015637 664015974 1.200000e-64 257.0
8 TraesCS5A01G483600 chr5B 81.061 264 17 14 3143 3379 664018384 664018641 2.680000e-41 180.0
9 TraesCS5A01G483600 chr5B 89.764 127 10 2 2821 2946 227837192 227837316 3.490000e-35 159.0
10 TraesCS5A01G483600 chr5B 88.148 135 12 3 114 245 663924459 663924592 1.260000e-34 158.0
11 TraesCS5A01G483600 chr5D 88.401 1526 120 22 876 2387 527492419 527493901 0.000000e+00 1784.0
12 TraesCS5A01G483600 chr5D 83.303 557 55 28 972 1523 527434199 527434722 2.360000e-131 479.0
13 TraesCS5A01G483600 chr5D 86.531 245 26 4 3 245 527436295 527436534 2.590000e-66 263.0
14 TraesCS5A01G483600 chr5D 84.956 226 10 10 3176 3379 527494786 527495009 1.230000e-49 207.0
15 TraesCS5A01G483600 chr5D 82.403 233 18 8 238 450 527436586 527436815 7.450000e-42 182.0
16 TraesCS5A01G483600 chr5D 93.043 115 8 0 2831 2945 270254141 270254027 5.800000e-38 169.0
17 TraesCS5A01G483600 chr5D 94.000 50 2 1 757 805 225584064 225584113 1.300000e-09 75.0
18 TraesCS5A01G483600 chr6B 92.308 117 9 0 2831 2947 601043173 601043057 2.090000e-37 167.0
19 TraesCS5A01G483600 chr6B 90.323 124 10 1 2821 2944 644377917 644377796 9.710000e-36 161.0
20 TraesCS5A01G483600 chr2B 92.982 114 8 0 2831 2944 441077070 441076957 2.090000e-37 167.0
21 TraesCS5A01G483600 chr2A 91.525 118 10 0 2831 2948 148025344 148025461 2.700000e-36 163.0
22 TraesCS5A01G483600 chr2A 90.323 124 10 1 2821 2944 78848815 78848936 9.710000e-36 161.0
23 TraesCS5A01G483600 chr2A 89.286 56 5 1 751 805 270466836 270466891 6.050000e-08 69.4
24 TraesCS5A01G483600 chr1D 90.833 120 11 0 2831 2950 416663338 416663219 9.710000e-36 161.0
25 TraesCS5A01G483600 chr4B 88.060 134 14 2 2831 2962 575779055 575778922 1.260000e-34 158.0
26 TraesCS5A01G483600 chr4B 92.157 51 2 1 755 805 526954510 526954558 1.680000e-08 71.3
27 TraesCS5A01G483600 chr4D 91.379 58 2 2 770 824 374296596 374296653 3.620000e-10 76.8
28 TraesCS5A01G483600 chr6D 92.308 52 2 2 762 811 29232284 29232335 4.680000e-09 73.1
29 TraesCS5A01G483600 chr7B 86.567 67 5 3 764 826 559534875 559534941 1.680000e-08 71.3
30 TraesCS5A01G483600 chr3D 89.474 57 2 3 770 826 499945104 499945156 6.050000e-08 69.4
31 TraesCS5A01G483600 chr2D 89.286 56 5 1 751 805 238158177 238158232 6.050000e-08 69.4
32 TraesCS5A01G483600 chr3B 87.931 58 6 1 769 826 795334412 795334356 2.180000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G483600 chr5A 654610827 654614207 3380 False 6244.0 6244 100.000000 1 3381 1 chr5A.!!$F3 3380
1 TraesCS5A01G483600 chr5B 664015637 664018641 3004 False 949.0 2410 84.448333 280 3379 3 chr5B.!!$F5 3099
2 TraesCS5A01G483600 chr5B 663922786 663924592 1806 False 336.0 514 86.141500 114 1523 2 chr5B.!!$F4 1409
3 TraesCS5A01G483600 chr5D 527492419 527495009 2590 False 995.5 1784 86.678500 876 3379 2 chr5D.!!$F3 2503
4 TraesCS5A01G483600 chr5D 527434199 527436815 2616 False 308.0 479 84.079000 3 1523 3 chr5D.!!$F2 1520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
909 956 0.036010 CACAGCCGTTGGATCCTCTT 60.036 55.0 14.23 0.0 0.0 2.85 F
1696 1772 0.521735 GTCCGTGAACTGAAATGGGC 59.478 55.0 0.00 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2347 2459 0.036577 GCTCCTTCTTCAGCTGCTCA 60.037 55.0 9.47 0.0 32.48 4.26 R
2921 3673 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.671495 ATAATATGCTTGATCGTTATGCACA 57.329 32.000 0.00 0.00 36.44 4.57
25 26 6.375945 AATATGCTTGATCGTTATGCACAA 57.624 33.333 0.00 0.00 36.44 3.33
26 27 3.745332 TGCTTGATCGTTATGCACAAG 57.255 42.857 6.60 6.60 40.24 3.16
27 28 3.073678 TGCTTGATCGTTATGCACAAGT 58.926 40.909 11.27 0.00 39.69 3.16
28 29 3.501828 TGCTTGATCGTTATGCACAAGTT 59.498 39.130 11.27 0.00 39.69 2.66
29 30 3.848019 GCTTGATCGTTATGCACAAGTTG 59.152 43.478 11.27 0.00 39.69 3.16
30 31 4.613622 GCTTGATCGTTATGCACAAGTTGT 60.614 41.667 1.64 1.64 39.69 3.32
31 32 5.431420 TTGATCGTTATGCACAAGTTGTT 57.569 34.783 5.57 0.00 0.00 2.83
32 33 4.782156 TGATCGTTATGCACAAGTTGTTG 58.218 39.130 5.57 3.54 39.82 3.33
33 34 4.513318 TGATCGTTATGCACAAGTTGTTGA 59.487 37.500 5.57 0.00 37.10 3.18
34 35 4.466567 TCGTTATGCACAAGTTGTTGAG 57.533 40.909 5.57 0.00 37.10 3.02
35 36 4.123506 TCGTTATGCACAAGTTGTTGAGA 58.876 39.130 5.57 0.00 37.10 3.27
36 37 4.025229 TCGTTATGCACAAGTTGTTGAGAC 60.025 41.667 5.57 1.47 37.10 3.36
37 38 4.211389 GTTATGCACAAGTTGTTGAGACG 58.789 43.478 5.57 0.00 37.10 4.18
38 39 1.013596 TGCACAAGTTGTTGAGACGG 58.986 50.000 5.57 0.00 37.10 4.79
39 40 1.295792 GCACAAGTTGTTGAGACGGA 58.704 50.000 5.57 0.00 37.10 4.69
40 41 1.003866 GCACAAGTTGTTGAGACGGAC 60.004 52.381 5.57 0.00 37.10 4.79
41 42 1.597663 CACAAGTTGTTGAGACGGACC 59.402 52.381 5.57 0.00 37.10 4.46
42 43 1.208535 ACAAGTTGTTGAGACGGACCA 59.791 47.619 1.64 0.00 37.10 4.02
43 44 2.158813 ACAAGTTGTTGAGACGGACCAT 60.159 45.455 1.64 0.00 37.10 3.55
44 45 2.878406 CAAGTTGTTGAGACGGACCATT 59.122 45.455 0.00 0.00 35.46 3.16
45 46 2.494059 AGTTGTTGAGACGGACCATTG 58.506 47.619 0.00 0.00 0.00 2.82
46 47 2.158813 AGTTGTTGAGACGGACCATTGT 60.159 45.455 0.00 0.00 0.00 2.71
47 48 1.877637 TGTTGAGACGGACCATTGTG 58.122 50.000 0.00 0.00 0.00 3.33
48 49 1.156736 GTTGAGACGGACCATTGTGG 58.843 55.000 0.00 0.00 45.02 4.17
61 62 4.909696 CCATTGTGGTGTTTGTGAGTAA 57.090 40.909 0.00 0.00 31.35 2.24
62 63 5.452078 CCATTGTGGTGTTTGTGAGTAAT 57.548 39.130 0.00 0.00 31.35 1.89
63 64 5.841810 CCATTGTGGTGTTTGTGAGTAATT 58.158 37.500 0.00 0.00 31.35 1.40
64 65 6.279882 CCATTGTGGTGTTTGTGAGTAATTT 58.720 36.000 0.00 0.00 31.35 1.82
65 66 6.760770 CCATTGTGGTGTTTGTGAGTAATTTT 59.239 34.615 0.00 0.00 31.35 1.82
66 67 7.279758 CCATTGTGGTGTTTGTGAGTAATTTTT 59.720 33.333 0.00 0.00 31.35 1.94
67 68 7.820044 TTGTGGTGTTTGTGAGTAATTTTTC 57.180 32.000 0.00 0.00 0.00 2.29
68 69 6.925211 TGTGGTGTTTGTGAGTAATTTTTCA 58.075 32.000 0.00 0.00 0.00 2.69
69 70 6.809196 TGTGGTGTTTGTGAGTAATTTTTCAC 59.191 34.615 12.58 12.58 43.07 3.18
79 80 8.115491 GTGAGTAATTTTTCACAAACCAACTC 57.885 34.615 13.92 3.97 42.47 3.01
80 81 7.222031 GTGAGTAATTTTTCACAAACCAACTCC 59.778 37.037 13.92 0.00 42.47 3.85
81 82 6.270064 AGTAATTTTTCACAAACCAACTCCG 58.730 36.000 0.00 0.00 0.00 4.63
82 83 4.729227 ATTTTTCACAAACCAACTCCGT 57.271 36.364 0.00 0.00 0.00 4.69
83 84 4.522722 TTTTTCACAAACCAACTCCGTT 57.477 36.364 0.00 0.00 0.00 4.44
84 85 4.522722 TTTTCACAAACCAACTCCGTTT 57.477 36.364 0.00 0.00 33.75 3.60
91 92 4.794278 AAACCAACTCCGTTTGAAAGTT 57.206 36.364 0.00 0.00 32.30 2.66
92 93 4.365899 AACCAACTCCGTTTGAAAGTTC 57.634 40.909 0.00 0.00 31.04 3.01
93 94 3.349022 ACCAACTCCGTTTGAAAGTTCA 58.651 40.909 0.00 0.00 31.04 3.18
94 95 3.377172 ACCAACTCCGTTTGAAAGTTCAG 59.623 43.478 0.00 0.00 38.61 3.02
95 96 3.625764 CCAACTCCGTTTGAAAGTTCAGA 59.374 43.478 0.00 0.00 38.61 3.27
96 97 4.495844 CCAACTCCGTTTGAAAGTTCAGAC 60.496 45.833 4.96 4.96 38.61 3.51
97 98 3.869065 ACTCCGTTTGAAAGTTCAGACA 58.131 40.909 13.31 0.00 41.01 3.41
98 99 4.258543 ACTCCGTTTGAAAGTTCAGACAA 58.741 39.130 13.31 2.48 41.01 3.18
99 100 4.698304 ACTCCGTTTGAAAGTTCAGACAAA 59.302 37.500 13.31 0.00 41.01 2.83
100 101 5.182380 ACTCCGTTTGAAAGTTCAGACAAAA 59.818 36.000 13.31 0.00 41.01 2.44
101 102 6.015027 TCCGTTTGAAAGTTCAGACAAAAA 57.985 33.333 13.31 0.00 41.01 1.94
102 103 5.859648 TCCGTTTGAAAGTTCAGACAAAAAC 59.140 36.000 13.31 5.20 41.01 2.43
103 104 5.861787 CCGTTTGAAAGTTCAGACAAAAACT 59.138 36.000 13.31 0.00 41.01 2.66
104 105 7.024768 CCGTTTGAAAGTTCAGACAAAAACTA 58.975 34.615 13.31 0.00 41.01 2.24
105 106 7.539366 CCGTTTGAAAGTTCAGACAAAAACTAA 59.461 33.333 13.31 0.00 41.01 2.24
106 107 8.907685 CGTTTGAAAGTTCAGACAAAAACTAAA 58.092 29.630 13.31 0.00 41.01 1.85
114 115 8.847196 AGTTCAGACAAAAACTAAATCTAACCC 58.153 33.333 0.00 0.00 34.05 4.11
115 116 8.847196 GTTCAGACAAAAACTAAATCTAACCCT 58.153 33.333 0.00 0.00 0.00 4.34
116 117 8.990163 TCAGACAAAAACTAAATCTAACCCTT 57.010 30.769 0.00 0.00 0.00 3.95
117 118 9.416284 TCAGACAAAAACTAAATCTAACCCTTT 57.584 29.630 0.00 0.00 0.00 3.11
120 121 8.657074 ACAAAAACTAAATCTAACCCTTTTGC 57.343 30.769 0.00 0.00 36.47 3.68
121 122 8.482943 ACAAAAACTAAATCTAACCCTTTTGCT 58.517 29.630 0.00 0.00 36.47 3.91
122 123 9.325198 CAAAAACTAAATCTAACCCTTTTGCTT 57.675 29.630 0.00 0.00 0.00 3.91
127 128 9.309224 ACTAAATCTAACCCTTTTGCTTAATGT 57.691 29.630 0.00 0.00 0.00 2.71
128 129 9.573133 CTAAATCTAACCCTTTTGCTTAATGTG 57.427 33.333 0.00 0.00 0.00 3.21
129 130 7.775053 AATCTAACCCTTTTGCTTAATGTGA 57.225 32.000 0.00 0.00 0.00 3.58
130 131 6.817765 TCTAACCCTTTTGCTTAATGTGAG 57.182 37.500 0.00 0.00 0.00 3.51
131 132 3.942130 ACCCTTTTGCTTAATGTGAGC 57.058 42.857 0.00 0.00 40.53 4.26
132 133 3.500343 ACCCTTTTGCTTAATGTGAGCT 58.500 40.909 0.00 0.00 40.75 4.09
133 134 3.507622 ACCCTTTTGCTTAATGTGAGCTC 59.492 43.478 6.82 6.82 40.75 4.09
134 135 3.119352 CCCTTTTGCTTAATGTGAGCTCC 60.119 47.826 12.15 3.09 40.75 4.70
135 136 3.119352 CCTTTTGCTTAATGTGAGCTCCC 60.119 47.826 12.15 0.00 40.75 4.30
136 137 2.128771 TTGCTTAATGTGAGCTCCCC 57.871 50.000 12.15 2.07 40.75 4.81
137 138 1.289160 TGCTTAATGTGAGCTCCCCT 58.711 50.000 12.15 0.00 40.75 4.79
138 139 1.210478 TGCTTAATGTGAGCTCCCCTC 59.790 52.381 12.15 0.00 40.75 4.30
139 140 1.808133 GCTTAATGTGAGCTCCCCTCG 60.808 57.143 12.15 0.00 43.82 4.63
144 145 2.359011 TGAGCTCCCCTCGCACTA 59.641 61.111 12.15 0.00 43.82 2.74
145 146 1.304962 TGAGCTCCCCTCGCACTAA 60.305 57.895 12.15 0.00 43.82 2.24
146 147 0.902984 TGAGCTCCCCTCGCACTAAA 60.903 55.000 12.15 0.00 43.82 1.85
147 148 0.179097 GAGCTCCCCTCGCACTAAAG 60.179 60.000 0.87 0.00 0.00 1.85
148 149 0.905337 AGCTCCCCTCGCACTAAAGT 60.905 55.000 0.00 0.00 0.00 2.66
149 150 0.036294 GCTCCCCTCGCACTAAAGTT 60.036 55.000 0.00 0.00 0.00 2.66
150 151 1.726853 CTCCCCTCGCACTAAAGTTG 58.273 55.000 0.00 0.00 0.00 3.16
151 152 0.323629 TCCCCTCGCACTAAAGTTGG 59.676 55.000 0.00 0.00 0.00 3.77
152 153 1.305930 CCCCTCGCACTAAAGTTGGC 61.306 60.000 0.00 0.00 0.00 4.52
153 154 0.605319 CCCTCGCACTAAAGTTGGCA 60.605 55.000 0.00 0.00 0.00 4.92
154 155 1.234821 CCTCGCACTAAAGTTGGCAA 58.765 50.000 0.00 0.00 0.00 4.52
155 156 1.812571 CCTCGCACTAAAGTTGGCAAT 59.187 47.619 1.92 0.00 0.00 3.56
156 157 2.414559 CCTCGCACTAAAGTTGGCAATG 60.415 50.000 1.92 0.00 0.00 2.82
157 158 2.226330 TCGCACTAAAGTTGGCAATGT 58.774 42.857 1.92 0.00 0.00 2.71
158 159 2.225491 TCGCACTAAAGTTGGCAATGTC 59.775 45.455 1.92 0.00 0.00 3.06
159 160 2.668279 CGCACTAAAGTTGGCAATGTCC 60.668 50.000 1.92 0.00 0.00 4.02
160 161 2.668279 GCACTAAAGTTGGCAATGTCCG 60.668 50.000 1.92 0.00 0.00 4.79
161 162 2.811431 CACTAAAGTTGGCAATGTCCGA 59.189 45.455 1.92 0.00 0.00 4.55
162 163 3.074412 ACTAAAGTTGGCAATGTCCGAG 58.926 45.455 1.92 0.00 0.00 4.63
163 164 0.598065 AAAGTTGGCAATGTCCGAGC 59.402 50.000 1.92 0.00 0.00 5.03
168 169 3.909662 GCAATGTCCGAGCCACAT 58.090 55.556 0.00 0.00 35.94 3.21
169 170 3.079131 GCAATGTCCGAGCCACATA 57.921 52.632 0.00 0.00 33.12 2.29
170 171 0.657840 GCAATGTCCGAGCCACATAC 59.342 55.000 0.00 0.00 33.12 2.39
171 172 1.743772 GCAATGTCCGAGCCACATACT 60.744 52.381 0.00 0.00 33.12 2.12
172 173 2.632377 CAATGTCCGAGCCACATACTT 58.368 47.619 0.00 0.00 33.12 2.24
173 174 2.315925 ATGTCCGAGCCACATACTTG 57.684 50.000 0.00 0.00 32.48 3.16
174 175 0.249120 TGTCCGAGCCACATACTTGG 59.751 55.000 0.00 0.00 39.72 3.61
175 176 0.535335 GTCCGAGCCACATACTTGGA 59.465 55.000 0.00 0.00 44.06 3.53
176 177 0.824109 TCCGAGCCACATACTTGGAG 59.176 55.000 0.00 0.00 41.87 3.86
177 178 0.537188 CCGAGCCACATACTTGGAGT 59.463 55.000 0.00 0.00 40.69 3.85
178 179 1.066143 CCGAGCCACATACTTGGAGTT 60.066 52.381 0.00 0.00 40.69 3.01
179 180 2.002586 CGAGCCACATACTTGGAGTTG 58.997 52.381 0.00 0.00 39.24 3.16
180 181 2.359900 GAGCCACATACTTGGAGTTGG 58.640 52.381 0.00 0.00 39.24 3.77
181 182 1.985159 AGCCACATACTTGGAGTTGGA 59.015 47.619 2.33 0.00 39.24 3.53
182 183 2.375174 AGCCACATACTTGGAGTTGGAA 59.625 45.455 2.33 0.00 39.24 3.53
183 184 3.010584 AGCCACATACTTGGAGTTGGAAT 59.989 43.478 2.33 0.00 39.24 3.01
184 185 3.763897 GCCACATACTTGGAGTTGGAATT 59.236 43.478 2.33 0.00 39.24 2.17
185 186 4.142381 GCCACATACTTGGAGTTGGAATTC 60.142 45.833 0.00 0.00 39.24 2.17
186 187 5.256474 CCACATACTTGGAGTTGGAATTCT 58.744 41.667 5.23 0.00 39.24 2.40
187 188 5.711976 CCACATACTTGGAGTTGGAATTCTT 59.288 40.000 5.23 0.00 39.24 2.52
188 189 6.209391 CCACATACTTGGAGTTGGAATTCTTT 59.791 38.462 5.23 0.00 39.24 2.52
189 190 7.393234 CCACATACTTGGAGTTGGAATTCTTTA 59.607 37.037 5.23 0.00 39.24 1.85
190 191 8.960591 CACATACTTGGAGTTGGAATTCTTTAT 58.039 33.333 5.23 0.00 0.00 1.40
191 192 9.533831 ACATACTTGGAGTTGGAATTCTTTATT 57.466 29.630 5.23 0.00 0.00 1.40
192 193 9.793252 CATACTTGGAGTTGGAATTCTTTATTG 57.207 33.333 5.23 0.00 0.00 1.90
193 194 6.691508 ACTTGGAGTTGGAATTCTTTATTGC 58.308 36.000 5.23 0.00 35.33 3.56
194 195 5.309323 TGGAGTTGGAATTCTTTATTGCG 57.691 39.130 5.23 0.00 37.38 4.85
195 196 4.764823 TGGAGTTGGAATTCTTTATTGCGT 59.235 37.500 5.23 0.00 37.38 5.24
196 197 5.242838 TGGAGTTGGAATTCTTTATTGCGTT 59.757 36.000 5.23 0.00 37.38 4.84
197 198 6.156519 GGAGTTGGAATTCTTTATTGCGTTT 58.843 36.000 5.23 0.00 37.38 3.60
198 199 6.645003 GGAGTTGGAATTCTTTATTGCGTTTT 59.355 34.615 5.23 0.00 37.38 2.43
199 200 7.170828 GGAGTTGGAATTCTTTATTGCGTTTTT 59.829 33.333 5.23 0.00 37.38 1.94
224 225 4.560128 TGAGAGGACAAAATTCTCACTCG 58.440 43.478 0.00 0.00 41.62 4.18
225 226 4.039245 TGAGAGGACAAAATTCTCACTCGT 59.961 41.667 0.00 0.00 41.62 4.18
226 227 4.962155 AGAGGACAAAATTCTCACTCGTT 58.038 39.130 0.00 0.00 0.00 3.85
227 228 6.097915 AGAGGACAAAATTCTCACTCGTTA 57.902 37.500 0.00 0.00 0.00 3.18
228 229 6.702329 AGAGGACAAAATTCTCACTCGTTAT 58.298 36.000 0.00 0.00 0.00 1.89
229 230 7.162082 AGAGGACAAAATTCTCACTCGTTATT 58.838 34.615 0.00 0.00 0.00 1.40
230 231 7.661847 AGAGGACAAAATTCTCACTCGTTATTT 59.338 33.333 0.00 0.00 0.00 1.40
231 232 8.166422 AGGACAAAATTCTCACTCGTTATTTT 57.834 30.769 0.00 0.00 0.00 1.82
232 233 8.290325 AGGACAAAATTCTCACTCGTTATTTTC 58.710 33.333 0.00 0.00 0.00 2.29
233 234 8.073768 GGACAAAATTCTCACTCGTTATTTTCA 58.926 33.333 0.00 0.00 0.00 2.69
234 235 9.445786 GACAAAATTCTCACTCGTTATTTTCAA 57.554 29.630 0.00 0.00 0.00 2.69
235 236 9.796120 ACAAAATTCTCACTCGTTATTTTCAAA 57.204 25.926 0.00 0.00 0.00 2.69
263 264 9.613428 AAAGATACGATAAATCACCAAGAATCA 57.387 29.630 0.00 0.00 0.00 2.57
264 265 9.784531 AAGATACGATAAATCACCAAGAATCAT 57.215 29.630 0.00 0.00 0.00 2.45
265 266 9.784531 AGATACGATAAATCACCAAGAATCATT 57.215 29.630 0.00 0.00 0.00 2.57
269 270 9.265901 ACGATAAATCACCAAGAATCATTAGAG 57.734 33.333 0.00 0.00 0.00 2.43
270 271 8.715998 CGATAAATCACCAAGAATCATTAGAGG 58.284 37.037 0.00 0.00 0.00 3.69
271 272 9.566432 GATAAATCACCAAGAATCATTAGAGGT 57.434 33.333 0.00 0.00 0.00 3.85
273 274 8.738645 AAATCACCAAGAATCATTAGAGGTAC 57.261 34.615 0.00 0.00 0.00 3.34
275 276 8.783660 ATCACCAAGAATCATTAGAGGTACTA 57.216 34.615 0.00 0.00 41.55 1.82
276 277 8.783660 TCACCAAGAATCATTAGAGGTACTAT 57.216 34.615 0.00 0.00 41.55 2.12
277 278 8.861086 TCACCAAGAATCATTAGAGGTACTATC 58.139 37.037 0.00 0.00 41.55 2.08
278 279 8.865090 CACCAAGAATCATTAGAGGTACTATCT 58.135 37.037 6.43 6.43 41.55 1.98
279 280 9.440761 ACCAAGAATCATTAGAGGTACTATCTT 57.559 33.333 6.48 0.00 41.55 2.40
280 281 9.703892 CCAAGAATCATTAGAGGTACTATCTTG 57.296 37.037 6.48 0.00 41.55 3.02
283 284 9.875708 AGAATCATTAGAGGTACTATCTTGTCT 57.124 33.333 6.48 0.00 41.55 3.41
314 315 6.478016 AGATGTTCATGATGATAACTCACACG 59.522 38.462 0.00 0.00 33.22 4.49
361 362 6.672218 TCTCAAACAATAGGATCCTAACCAGA 59.328 38.462 25.20 15.98 31.73 3.86
362 363 6.889198 TCAAACAATAGGATCCTAACCAGAG 58.111 40.000 25.20 13.89 31.73 3.35
379 382 4.841246 ACCAGAGACTGTCAAGATTACCTT 59.159 41.667 10.88 0.00 34.91 3.50
381 384 6.670027 ACCAGAGACTGTCAAGATTACCTTAT 59.330 38.462 10.88 0.00 32.86 1.73
432 435 6.758254 ACTTGTCAAATAGTGAATTTTGGGG 58.242 36.000 0.00 0.00 38.23 4.96
433 436 6.326323 ACTTGTCAAATAGTGAATTTTGGGGT 59.674 34.615 0.00 0.00 38.23 4.95
445 448 5.729229 TGAATTTTGGGGTAGAGTGGAGATA 59.271 40.000 0.00 0.00 0.00 1.98
455 458 6.239600 GGGTAGAGTGGAGATACATGCATTAA 60.240 42.308 0.00 0.00 0.00 1.40
461 464 6.883217 AGTGGAGATACATGCATTAATGATCC 59.117 38.462 19.73 11.44 0.00 3.36
465 468 7.010552 GGAGATACATGCATTAATGATCCGTAC 59.989 40.741 19.73 5.27 0.00 3.67
468 471 2.761559 TGCATTAATGATCCGTACGGG 58.238 47.619 32.80 15.01 35.59 5.28
480 483 2.601067 TACGGGGTTGGCTCGTCA 60.601 61.111 0.00 0.00 38.19 4.35
491 494 1.226603 GCTCGTCAGCGTACCGAAT 60.227 57.895 0.00 0.00 35.39 3.34
494 497 2.857489 GCTCGTCAGCGTACCGAATTAT 60.857 50.000 0.00 0.00 35.39 1.28
502 505 6.420008 GTCAGCGTACCGAATTATCAGTTATT 59.580 38.462 0.00 0.00 0.00 1.40
503 506 7.592533 GTCAGCGTACCGAATTATCAGTTATTA 59.407 37.037 0.00 0.00 0.00 0.98
504 507 8.136800 TCAGCGTACCGAATTATCAGTTATTAA 58.863 33.333 0.00 0.00 0.00 1.40
505 508 8.922676 CAGCGTACCGAATTATCAGTTATTAAT 58.077 33.333 0.00 0.00 0.00 1.40
506 509 9.485206 AGCGTACCGAATTATCAGTTATTAATT 57.515 29.630 0.00 0.00 0.00 1.40
523 526 9.931210 GTTATTAATTATCCAACTTTCTGACCG 57.069 33.333 0.00 0.00 0.00 4.79
524 527 4.965119 AATTATCCAACTTTCTGACCGC 57.035 40.909 0.00 0.00 0.00 5.68
527 530 1.073199 CCAACTTTCTGACCGCCCT 59.927 57.895 0.00 0.00 0.00 5.19
528 531 0.323629 CCAACTTTCTGACCGCCCTA 59.676 55.000 0.00 0.00 0.00 3.53
530 533 0.323957 AACTTTCTGACCGCCCTACC 59.676 55.000 0.00 0.00 0.00 3.18
531 534 0.834687 ACTTTCTGACCGCCCTACCA 60.835 55.000 0.00 0.00 0.00 3.25
532 535 0.541863 CTTTCTGACCGCCCTACCAT 59.458 55.000 0.00 0.00 0.00 3.55
533 536 0.251916 TTTCTGACCGCCCTACCATG 59.748 55.000 0.00 0.00 0.00 3.66
536 545 3.480133 GACCGCCCTACCATGCCT 61.480 66.667 0.00 0.00 0.00 4.75
546 555 4.326255 CCATGCCTGGTCAAGTCC 57.674 61.111 0.00 0.00 37.79 3.85
548 557 1.296392 CATGCCTGGTCAAGTCCGA 59.704 57.895 0.00 0.00 0.00 4.55
560 569 3.678548 GTCAAGTCCGAATCGCTTAGTTT 59.321 43.478 0.00 0.00 0.00 2.66
563 572 6.035758 GTCAAGTCCGAATCGCTTAGTTTATT 59.964 38.462 0.00 0.00 0.00 1.40
565 574 5.416947 AGTCCGAATCGCTTAGTTTATTGT 58.583 37.500 0.00 0.00 0.00 2.71
571 580 7.696453 CCGAATCGCTTAGTTTATTGTCATTTT 59.304 33.333 0.00 0.00 0.00 1.82
615 624 2.297701 TGGTCAGCAGGAAGTTTGTTC 58.702 47.619 0.00 0.00 0.00 3.18
617 626 1.609072 GTCAGCAGGAAGTTTGTTCCC 59.391 52.381 0.00 0.00 39.39 3.97
618 627 0.961753 CAGCAGGAAGTTTGTTCCCC 59.038 55.000 0.00 0.00 39.39 4.81
620 629 1.063266 AGCAGGAAGTTTGTTCCCCAA 60.063 47.619 0.00 0.00 39.39 4.12
656 673 9.574516 AGGTCTCTAAATAAAGTTGTTGATTGT 57.425 29.630 0.00 0.00 0.00 2.71
660 677 9.831737 CTCTAAATAAAGTTGTTGATTGTCTGG 57.168 33.333 0.00 0.00 0.00 3.86
661 678 8.296713 TCTAAATAAAGTTGTTGATTGTCTGGC 58.703 33.333 0.00 0.00 0.00 4.85
664 681 4.734398 AAGTTGTTGATTGTCTGGCAAA 57.266 36.364 0.00 0.00 40.91 3.68
670 687 6.741992 TGTTGATTGTCTGGCAAAGTATAG 57.258 37.500 0.00 0.00 40.91 1.31
671 688 6.237901 TGTTGATTGTCTGGCAAAGTATAGT 58.762 36.000 0.00 0.00 40.91 2.12
672 689 6.714810 TGTTGATTGTCTGGCAAAGTATAGTT 59.285 34.615 0.00 0.00 40.91 2.24
673 690 6.741992 TGATTGTCTGGCAAAGTATAGTTG 57.258 37.500 0.00 0.00 40.91 3.16
681 698 4.008539 GCAAAGTATAGTTGCTGTGAGC 57.991 45.455 11.99 0.00 46.31 4.26
682 699 3.484229 GCAAAGTATAGTTGCTGTGAGCG 60.484 47.826 11.99 0.00 46.26 5.03
683 700 3.868757 AAGTATAGTTGCTGTGAGCGA 57.131 42.857 0.00 0.00 46.26 4.93
684 701 3.428746 AGTATAGTTGCTGTGAGCGAG 57.571 47.619 0.00 0.00 46.26 5.03
685 702 2.755655 AGTATAGTTGCTGTGAGCGAGT 59.244 45.455 0.00 0.00 46.26 4.18
686 703 2.285827 ATAGTTGCTGTGAGCGAGTC 57.714 50.000 0.00 0.00 46.26 3.36
687 704 0.958822 TAGTTGCTGTGAGCGAGTCA 59.041 50.000 0.00 0.00 46.26 3.41
688 705 0.319728 AGTTGCTGTGAGCGAGTCAT 59.680 50.000 0.00 0.00 46.26 3.06
689 706 0.441533 GTTGCTGTGAGCGAGTCATG 59.558 55.000 0.00 0.00 46.26 3.07
690 707 0.671472 TTGCTGTGAGCGAGTCATGG 60.671 55.000 0.00 0.00 46.26 3.66
691 708 2.459442 GCTGTGAGCGAGTCATGGC 61.459 63.158 0.00 0.00 37.56 4.40
692 709 1.217511 CTGTGAGCGAGTCATGGCT 59.782 57.895 0.00 0.00 44.01 4.75
693 710 1.079612 TGTGAGCGAGTCATGGCTG 60.080 57.895 3.48 0.00 41.04 4.85
694 711 1.079543 GTGAGCGAGTCATGGCTGT 60.080 57.895 3.48 0.00 41.04 4.40
714 731 4.394729 TGTATGACTTGACAAAGAACCCC 58.605 43.478 0.00 0.00 36.84 4.95
715 732 3.593442 ATGACTTGACAAAGAACCCCA 57.407 42.857 0.00 0.00 36.84 4.96
725 742 5.417580 TGACAAAGAACCCCATGTATTAAGC 59.582 40.000 0.00 0.00 0.00 3.09
728 745 6.440328 ACAAAGAACCCCATGTATTAAGCATT 59.560 34.615 0.00 0.00 0.00 3.56
730 747 7.494922 AAGAACCCCATGTATTAAGCATTTT 57.505 32.000 0.00 0.00 0.00 1.82
771 788 8.779354 AACTCTGTCATCTTGGAATAAACTAC 57.221 34.615 0.00 0.00 0.00 2.73
775 792 6.650120 TGTCATCTTGGAATAAACTACTCCC 58.350 40.000 0.00 0.00 0.00 4.30
781 798 7.186972 TCTTGGAATAAACTACTCCCTCTGTA 58.813 38.462 0.00 0.00 0.00 2.74
783 800 7.801893 TGGAATAAACTACTCCCTCTGTAAA 57.198 36.000 0.00 0.00 0.00 2.01
784 801 7.848128 TGGAATAAACTACTCCCTCTGTAAAG 58.152 38.462 0.00 0.00 0.00 1.85
785 802 7.676893 TGGAATAAACTACTCCCTCTGTAAAGA 59.323 37.037 0.00 0.00 0.00 2.52
786 803 8.537858 GGAATAAACTACTCCCTCTGTAAAGAA 58.462 37.037 0.00 0.00 0.00 2.52
787 804 9.939802 GAATAAACTACTCCCTCTGTAAAGAAA 57.060 33.333 0.00 0.00 0.00 2.52
796 813 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
797 814 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
798 815 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
831 856 9.298250 AGCTAATACTACTATTGATCTCGGAAA 57.702 33.333 0.00 0.00 0.00 3.13
832 857 9.909644 GCTAATACTACTATTGATCTCGGAAAA 57.090 33.333 0.00 0.00 0.00 2.29
859 885 4.334759 AGCAGCTAAATTGACAGTATGCAG 59.665 41.667 0.00 0.00 42.53 4.41
870 896 5.063204 TGACAGTATGCAGTAAAAAGCAGT 58.937 37.500 0.00 0.00 44.94 4.40
888 935 2.998670 CAGTCACGATCATCAGCTTGTT 59.001 45.455 0.00 0.00 0.00 2.83
909 956 0.036010 CACAGCCGTTGGATCCTCTT 60.036 55.000 14.23 0.00 0.00 2.85
910 957 0.036010 ACAGCCGTTGGATCCTCTTG 60.036 55.000 14.23 5.62 0.00 3.02
912 959 1.201429 AGCCGTTGGATCCTCTTGGT 61.201 55.000 14.23 2.10 34.23 3.67
916 963 1.743996 GTTGGATCCTCTTGGTCAGC 58.256 55.000 14.23 0.00 34.23 4.26
937 984 3.957435 ATCTGGACGGCGGAGGACA 62.957 63.158 13.24 1.30 0.00 4.02
1083 1134 4.154347 CTCCACCGCTCTGCTCCC 62.154 72.222 0.00 0.00 0.00 4.30
1305 1356 2.278857 CGGCTCGCGCTCAAGTAT 60.279 61.111 5.56 0.00 36.09 2.12
1336 1387 4.643387 ACAAGGAGGTGCGGTGCC 62.643 66.667 0.00 0.00 0.00 5.01
1395 1447 5.546621 TGGAACTAGCTTCAGTACTGTTT 57.453 39.130 21.99 9.09 0.00 2.83
1398 1450 5.279556 GGAACTAGCTTCAGTACTGTTTCCT 60.280 44.000 21.99 15.40 0.00 3.36
1419 1473 5.649395 TCCTAATGGAGATTTTGCTGACAAG 59.351 40.000 0.00 0.00 37.46 3.16
1538 1598 4.719106 AGCAGCAGCAGCCCTGAC 62.719 66.667 13.46 6.09 44.64 3.51
1680 1756 3.570125 GGCTAGGAATTTTATGCTGGTCC 59.430 47.826 0.00 0.00 0.00 4.46
1695 1771 1.165270 GGTCCGTGAACTGAAATGGG 58.835 55.000 0.00 0.00 0.00 4.00
1696 1772 0.521735 GTCCGTGAACTGAAATGGGC 59.478 55.000 0.00 0.00 0.00 5.36
1732 1808 1.526887 GATCATTGATGCGGTGGTACG 59.473 52.381 3.32 0.00 0.00 3.67
1783 1862 1.197036 GTTTTCTGCTACGGAACTGCC 59.803 52.381 0.00 0.00 0.00 4.85
1787 1871 1.005037 TGCTACGGAACTGCCTGTG 60.005 57.895 0.00 0.00 0.00 3.66
1791 1875 0.535335 TACGGAACTGCCTGTGGATC 59.465 55.000 0.00 0.00 0.00 3.36
1811 1904 6.894654 TGGATCCAATTCCTATTGCAGTTTTA 59.105 34.615 13.46 0.00 39.87 1.52
1863 1960 8.623903 TGCAGATATAACAAGTTTGATTGATCC 58.376 33.333 0.00 0.00 34.20 3.36
1990 2093 4.202409 ACTCAGAGCAGAAACCTAAAAGCT 60.202 41.667 0.00 0.00 34.61 3.74
2014 2117 4.202223 TGTGGGAAGAACTGTCAGTAAGTC 60.202 45.833 5.77 0.17 0.00 3.01
2030 2137 6.147821 TCAGTAAGTCATCTTTACAGCTTTGC 59.852 38.462 0.00 0.00 35.36 3.68
2044 2151 2.158928 AGCTTTGCTGCACATTGGAAAA 60.159 40.909 0.00 0.00 37.57 2.29
2074 2183 2.230992 TGGAAAAGGATGGCAAATGTCG 59.769 45.455 0.00 0.00 0.00 4.35
2087 2199 3.433615 GCAAATGTCGACTTGCTAGAAGT 59.566 43.478 26.48 0.26 43.68 3.01
2091 2203 4.156664 TGTCGACTTGCTAGAAGTACAC 57.843 45.455 17.92 2.29 0.00 2.90
2125 2237 3.324846 CAGCTGGTAACTATGGCCTATGA 59.675 47.826 5.57 0.00 37.61 2.15
2132 2244 4.559862 AACTATGGCCTATGATGTAGCC 57.440 45.455 3.32 0.00 45.96 3.93
2146 2258 6.573664 TGATGTAGCCCATGCAAATTATAC 57.426 37.500 0.00 0.00 41.13 1.47
2159 2271 9.110617 CATGCAAATTATACTTATTTCTGCTCG 57.889 33.333 0.00 0.00 0.00 5.03
2162 2274 7.112148 GCAAATTATACTTATTTCTGCTCGTGC 59.888 37.037 1.71 1.71 40.20 5.34
2222 2334 1.874019 CTGAACATCGACGGCTCGG 60.874 63.158 0.00 0.00 40.58 4.63
2299 2411 2.486472 ATGCTCAGGGTGACAAGAAG 57.514 50.000 0.00 0.00 0.00 2.85
2307 2419 2.158608 AGGGTGACAAGAAGGGAACAAG 60.159 50.000 0.00 0.00 0.00 3.16
2368 2480 0.249955 AGCAGCTGAAGAAGGAGCTC 59.750 55.000 20.43 4.71 43.88 4.09
2383 2495 2.977178 CTCGGGCTCAGCTGAACT 59.023 61.111 18.85 0.00 0.00 3.01
2393 2505 1.027357 CAGCTGAACTGTTGCCTGTT 58.973 50.000 8.42 0.00 41.86 3.16
2395 2507 1.024271 GCTGAACTGTTGCCTGTTGA 58.976 50.000 0.00 0.00 33.45 3.18
2397 2509 2.016318 CTGAACTGTTGCCTGTTGACA 58.984 47.619 0.00 0.00 33.45 3.58
2404 2516 1.201181 GTTGCCTGTTGACAACACACA 59.799 47.619 17.02 14.33 44.39 3.72
2408 2520 1.735018 CCTGTTGACAACACACAACGA 59.265 47.619 17.02 0.00 46.06 3.85
2409 2521 2.354510 CCTGTTGACAACACACAACGAT 59.645 45.455 17.02 0.00 46.06 3.73
2419 2531 1.100463 ACACAACGATGGCAACTGCA 61.100 50.000 3.76 0.00 44.36 4.41
2431 2543 1.228245 AACTGCAGCCACCGTGATT 60.228 52.632 15.27 0.00 0.00 2.57
2439 2551 1.024579 GCCACCGTGATTGGTACCAG 61.025 60.000 15.65 4.79 41.38 4.00
2444 2556 1.600107 GTGATTGGTACCAGCCCGA 59.400 57.895 15.65 0.00 0.00 5.14
2462 2574 2.289694 CCGATGTTCATATGGAGGTCCC 60.290 54.545 2.13 0.00 34.29 4.46
2525 2643 5.878406 AGATGCTGTACTTTAGCTGGTAT 57.122 39.130 0.00 0.00 41.66 2.73
2540 2658 1.125633 GGTATAGCTTTCCGGTGGGA 58.874 55.000 0.00 0.00 41.83 4.37
2576 2694 5.254842 CGTTTTGCAGAATGTTTTTGTTCC 58.745 37.500 1.05 0.00 39.31 3.62
2578 2696 6.477742 GTTTTGCAGAATGTTTTTGTTCCTC 58.522 36.000 0.00 0.00 39.31 3.71
2640 2760 0.037232 GGCGTGTGCTTCCTTCTAGT 60.037 55.000 0.00 0.00 42.25 2.57
2644 2764 3.128242 GCGTGTGCTTCCTTCTAGTAGTA 59.872 47.826 0.00 0.00 38.39 1.82
2652 2772 8.302438 GTGCTTCCTTCTAGTAGTACAGTTTTA 58.698 37.037 2.52 0.00 0.00 1.52
2657 2777 9.578576 TCCTTCTAGTAGTACAGTTTTACTTGA 57.421 33.333 2.52 0.00 34.10 3.02
2673 2901 4.687901 ACTTGAATTTTGGGGTGAAAGG 57.312 40.909 0.00 0.00 0.00 3.11
2680 2908 3.390175 TTTGGGGTGAAAGGAACTGAA 57.610 42.857 0.00 0.00 40.86 3.02
2689 2917 1.061546 AAGGAACTGAAAGCCCGGTA 58.938 50.000 0.00 0.00 40.86 4.02
2691 2919 1.162698 GGAACTGAAAGCCCGGTAAC 58.837 55.000 0.00 0.00 37.60 2.50
2693 2921 1.804748 GAACTGAAAGCCCGGTAACTG 59.195 52.381 0.00 0.00 37.60 3.16
2694 2922 0.605589 ACTGAAAGCCCGGTAACTGC 60.606 55.000 0.00 0.00 37.60 4.40
2695 2923 0.605319 CTGAAAGCCCGGTAACTGCA 60.605 55.000 0.00 0.00 34.75 4.41
2698 2926 0.688487 AAAGCCCGGTAACTGCAGTA 59.312 50.000 22.01 5.84 34.75 2.74
2700 2928 1.153429 GCCCGGTAACTGCAGTAGG 60.153 63.158 22.01 19.61 32.79 3.18
2702 2930 0.108329 CCCGGTAACTGCAGTAGGTG 60.108 60.000 22.01 10.76 0.00 4.00
2703 2931 0.108329 CCGGTAACTGCAGTAGGTGG 60.108 60.000 22.01 16.02 0.00 4.61
2704 2932 0.739813 CGGTAACTGCAGTAGGTGGC 60.740 60.000 22.01 6.73 0.00 5.01
2705 2933 0.323629 GGTAACTGCAGTAGGTGGCA 59.676 55.000 22.01 0.00 38.52 4.92
2706 2934 1.065418 GGTAACTGCAGTAGGTGGCAT 60.065 52.381 22.01 3.99 39.65 4.40
2709 2937 0.035056 ACTGCAGTAGGTGGCATTCC 60.035 55.000 20.16 0.00 39.65 3.01
2711 2939 0.035152 TGCAGTAGGTGGCATTCCTG 60.035 55.000 6.90 4.79 36.60 3.86
2729 2991 2.101575 CGGCTCGATTTCGACGGA 59.898 61.111 0.00 0.00 44.22 4.69
2732 2994 0.853419 GGCTCGATTTCGACGGAATC 59.147 55.000 17.41 17.41 44.22 2.52
2740 3002 3.535280 TTTCGACGGAATCATGGATGA 57.465 42.857 0.00 0.00 41.70 2.92
2742 3004 3.097877 TCGACGGAATCATGGATGAAG 57.902 47.619 0.00 0.00 40.69 3.02
2743 3005 2.138320 CGACGGAATCATGGATGAAGG 58.862 52.381 0.00 0.00 40.69 3.46
2744 3006 2.498167 GACGGAATCATGGATGAAGGG 58.502 52.381 0.00 0.00 40.69 3.95
2745 3007 2.104792 GACGGAATCATGGATGAAGGGA 59.895 50.000 0.00 0.00 40.69 4.20
2747 3009 2.158769 CGGAATCATGGATGAAGGGACA 60.159 50.000 0.00 0.00 40.69 4.02
2748 3010 3.497405 CGGAATCATGGATGAAGGGACAT 60.497 47.826 0.00 0.00 40.69 3.06
2751 3013 6.251471 GGAATCATGGATGAAGGGACATAAT 58.749 40.000 0.00 0.00 40.69 1.28
2752 3014 6.376581 GGAATCATGGATGAAGGGACATAATC 59.623 42.308 0.00 0.00 40.69 1.75
2753 3015 5.910355 TCATGGATGAAGGGACATAATCA 57.090 39.130 0.00 0.00 33.08 2.57
2754 3016 5.624159 TCATGGATGAAGGGACATAATCAC 58.376 41.667 0.00 0.00 33.08 3.06
2755 3017 5.132480 TCATGGATGAAGGGACATAATCACA 59.868 40.000 0.00 0.00 33.08 3.58
2756 3018 4.780815 TGGATGAAGGGACATAATCACAC 58.219 43.478 0.00 0.00 30.38 3.82
2757 3019 4.137543 GGATGAAGGGACATAATCACACC 58.862 47.826 0.00 0.00 30.38 4.16
2758 3020 3.260475 TGAAGGGACATAATCACACCG 57.740 47.619 0.00 0.00 30.38 4.94
2759 3021 2.835156 TGAAGGGACATAATCACACCGA 59.165 45.455 0.00 0.00 30.38 4.69
2760 3022 3.262151 TGAAGGGACATAATCACACCGAA 59.738 43.478 0.00 0.00 30.38 4.30
2761 3023 3.992943 AGGGACATAATCACACCGAAA 57.007 42.857 0.00 0.00 30.38 3.46
2762 3024 3.873910 AGGGACATAATCACACCGAAAG 58.126 45.455 0.00 0.00 30.38 2.62
2763 3025 3.517901 AGGGACATAATCACACCGAAAGA 59.482 43.478 0.00 0.00 30.38 2.52
2765 3027 4.332819 GGGACATAATCACACCGAAAGAAG 59.667 45.833 0.00 0.00 0.00 2.85
2766 3028 4.201822 GGACATAATCACACCGAAAGAAGC 60.202 45.833 0.00 0.00 0.00 3.86
2767 3029 4.323417 ACATAATCACACCGAAAGAAGCA 58.677 39.130 0.00 0.00 0.00 3.91
2768 3030 4.393062 ACATAATCACACCGAAAGAAGCAG 59.607 41.667 0.00 0.00 0.00 4.24
2769 3031 1.160137 ATCACACCGAAAGAAGCAGC 58.840 50.000 0.00 0.00 0.00 5.25
2770 3032 1.205064 CACACCGAAAGAAGCAGCG 59.795 57.895 0.00 0.00 0.00 5.18
2779 3041 1.620822 AAGAAGCAGCGGTTCCATTT 58.379 45.000 14.02 3.48 40.41 2.32
2780 3042 1.620822 AGAAGCAGCGGTTCCATTTT 58.379 45.000 14.02 0.00 40.41 1.82
2791 3053 4.025229 GCGGTTCCATTTTTCTTTTTGACC 60.025 41.667 0.00 0.00 0.00 4.02
2792 3054 4.208253 CGGTTCCATTTTTCTTTTTGACCG 59.792 41.667 0.00 0.00 40.02 4.79
2793 3055 4.509970 GGTTCCATTTTTCTTTTTGACCGG 59.490 41.667 0.00 0.00 0.00 5.28
2794 3056 4.329462 TCCATTTTTCTTTTTGACCGGG 57.671 40.909 6.32 0.00 0.00 5.73
2795 3057 3.707102 TCCATTTTTCTTTTTGACCGGGT 59.293 39.130 6.32 0.00 0.00 5.28
2798 3060 4.379339 TTTTTCTTTTTGACCGGGTCAG 57.621 40.909 27.32 17.17 43.69 3.51
2799 3061 1.314730 TTCTTTTTGACCGGGTCAGC 58.685 50.000 27.32 3.62 43.69 4.26
2801 3063 1.852067 CTTTTTGACCGGGTCAGCGG 61.852 60.000 27.32 15.89 43.69 5.52
2802 3064 2.612095 TTTTTGACCGGGTCAGCGGT 62.612 55.000 27.32 7.23 43.69 5.68
2803 3065 2.612095 TTTTGACCGGGTCAGCGGTT 62.612 55.000 27.32 0.00 43.69 4.44
2804 3066 2.999739 TTTGACCGGGTCAGCGGTTC 63.000 60.000 27.32 0.56 43.69 3.62
2808 3070 2.046314 CGGGTCAGCGGTTCCATT 60.046 61.111 7.70 0.00 0.00 3.16
2809 3071 1.674322 CGGGTCAGCGGTTCCATTT 60.674 57.895 7.70 0.00 0.00 2.32
2810 3072 1.644786 CGGGTCAGCGGTTCCATTTC 61.645 60.000 7.70 0.00 0.00 2.17
2811 3073 1.644786 GGGTCAGCGGTTCCATTTCG 61.645 60.000 7.70 0.00 0.00 3.46
2812 3074 0.953960 GGTCAGCGGTTCCATTTCGT 60.954 55.000 0.00 0.00 0.00 3.85
2814 3076 1.265905 GTCAGCGGTTCCATTTCGTTT 59.734 47.619 0.00 0.00 0.00 3.60
2815 3077 1.265635 TCAGCGGTTCCATTTCGTTTG 59.734 47.619 0.00 0.00 0.00 2.93
2816 3078 1.001815 CAGCGGTTCCATTTCGTTTGT 60.002 47.619 0.00 0.00 0.00 2.83
2817 3079 1.001815 AGCGGTTCCATTTCGTTTGTG 60.002 47.619 0.00 0.00 0.00 3.33
2818 3080 1.002251 GCGGTTCCATTTCGTTTGTGA 60.002 47.619 0.00 0.00 0.00 3.58
2819 3081 2.916111 CGGTTCCATTTCGTTTGTGAG 58.084 47.619 0.00 0.00 0.00 3.51
2820 3082 2.546368 CGGTTCCATTTCGTTTGTGAGA 59.454 45.455 0.00 0.00 0.00 3.27
2821 3083 3.363970 CGGTTCCATTTCGTTTGTGAGAG 60.364 47.826 0.00 0.00 0.00 3.20
2822 3084 3.813166 GGTTCCATTTCGTTTGTGAGAGA 59.187 43.478 0.00 0.00 0.00 3.10
2826 3088 5.063204 TCCATTTCGTTTGTGAGAGAATGT 58.937 37.500 0.00 0.00 0.00 2.71
2827 3089 6.227522 TCCATTTCGTTTGTGAGAGAATGTA 58.772 36.000 0.00 0.00 0.00 2.29
2829 3091 5.917541 TTTCGTTTGTGAGAGAATGTACC 57.082 39.130 0.00 0.00 0.00 3.34
2834 3096 2.100197 TGTGAGAGAATGTACCCTCCG 58.900 52.381 0.00 0.00 0.00 4.63
2840 3102 0.101939 GAATGTACCCTCCGTCCGTC 59.898 60.000 0.00 0.00 0.00 4.79
2850 3229 1.133790 CTCCGTCCGTCCGAAAATACT 59.866 52.381 0.00 0.00 0.00 2.12
2859 3238 6.146021 GTCCGTCCGAAAATACTTGTTTTAGA 59.854 38.462 0.00 0.00 31.80 2.10
2861 3240 7.226325 TCCGTCCGAAAATACTTGTTTTAGAAA 59.774 33.333 0.00 0.00 31.80 2.52
2862 3241 8.019094 CCGTCCGAAAATACTTGTTTTAGAAAT 58.981 33.333 0.00 0.00 31.80 2.17
2949 4167 1.476471 CGGACGGAGGGAGTAGTATGT 60.476 57.143 0.00 0.00 0.00 2.29
2950 4168 2.228925 GGACGGAGGGAGTAGTATGTC 58.771 57.143 0.00 0.00 0.00 3.06
2953 4171 2.508716 ACGGAGGGAGTAGTATGTCTGA 59.491 50.000 0.00 0.00 0.00 3.27
2954 4172 3.053842 ACGGAGGGAGTAGTATGTCTGAA 60.054 47.826 0.00 0.00 0.00 3.02
2956 4174 4.686396 CGGAGGGAGTAGTATGTCTGAAGA 60.686 50.000 0.00 0.00 0.00 2.87
2957 4175 5.202004 GGAGGGAGTAGTATGTCTGAAGAA 58.798 45.833 0.00 0.00 0.00 2.52
2962 4180 8.043710 AGGGAGTAGTATGTCTGAAGAAAAATG 58.956 37.037 0.00 0.00 0.00 2.32
2964 4182 7.201652 GGAGTAGTATGTCTGAAGAAAAATGGC 60.202 40.741 0.00 0.00 0.00 4.40
2966 4184 5.003804 AGTATGTCTGAAGAAAAATGGCGT 58.996 37.500 0.00 0.00 0.00 5.68
2967 4185 3.624326 TGTCTGAAGAAAAATGGCGTG 57.376 42.857 0.00 0.00 0.00 5.34
2968 4186 2.287547 TGTCTGAAGAAAAATGGCGTGC 60.288 45.455 0.00 0.00 0.00 5.34
2978 4196 2.748251 TGGCGTGCCCAATTACGG 60.748 61.111 8.69 0.00 41.82 4.02
2986 4204 3.168773 CCCAATTACGGGGTGACTG 57.831 57.895 0.00 0.00 43.21 3.51
2994 4212 0.393077 ACGGGGTGACTGAACTGAAG 59.607 55.000 0.00 0.00 0.00 3.02
2997 4215 1.420138 GGGGTGACTGAACTGAAGGAA 59.580 52.381 0.00 0.00 0.00 3.36
3016 4234 5.467738 AGGAAAGAGGGAAGGATTTTGTTT 58.532 37.500 0.00 0.00 0.00 2.83
3017 4235 5.540337 AGGAAAGAGGGAAGGATTTTGTTTC 59.460 40.000 0.00 0.00 0.00 2.78
3018 4236 5.540337 GGAAAGAGGGAAGGATTTTGTTTCT 59.460 40.000 0.00 0.00 0.00 2.52
3019 4237 6.719829 GGAAAGAGGGAAGGATTTTGTTTCTA 59.280 38.462 0.00 0.00 0.00 2.10
3020 4238 7.397476 GGAAAGAGGGAAGGATTTTGTTTCTAT 59.603 37.037 0.00 0.00 0.00 1.98
3021 4239 8.727100 AAAGAGGGAAGGATTTTGTTTCTATT 57.273 30.769 0.00 0.00 0.00 1.73
3022 4240 8.727100 AAGAGGGAAGGATTTTGTTTCTATTT 57.273 30.769 0.00 0.00 0.00 1.40
3023 4241 8.727100 AGAGGGAAGGATTTTGTTTCTATTTT 57.273 30.769 0.00 0.00 0.00 1.82
3024 4242 9.159254 AGAGGGAAGGATTTTGTTTCTATTTTT 57.841 29.630 0.00 0.00 0.00 1.94
3025 4243 9.208022 GAGGGAAGGATTTTGTTTCTATTTTTG 57.792 33.333 0.00 0.00 0.00 2.44
3026 4244 8.713971 AGGGAAGGATTTTGTTTCTATTTTTGT 58.286 29.630 0.00 0.00 0.00 2.83
3027 4245 9.337396 GGGAAGGATTTTGTTTCTATTTTTGTT 57.663 29.630 0.00 0.00 0.00 2.83
3050 4268 0.730840 GAACGAACCGGCCCAATTAG 59.269 55.000 0.00 0.00 0.00 1.73
3105 4341 1.525077 AACCAAGCCAACGCGAGAA 60.525 52.632 15.93 0.00 41.18 2.87
3106 4342 1.507141 AACCAAGCCAACGCGAGAAG 61.507 55.000 15.93 0.00 41.18 2.85
3107 4343 1.667830 CCAAGCCAACGCGAGAAGA 60.668 57.895 15.93 0.00 41.18 2.87
3108 4344 1.630244 CCAAGCCAACGCGAGAAGAG 61.630 60.000 15.93 0.00 41.18 2.85
3109 4345 0.667487 CAAGCCAACGCGAGAAGAGA 60.667 55.000 15.93 0.00 41.18 3.10
3110 4346 0.389166 AAGCCAACGCGAGAAGAGAG 60.389 55.000 15.93 0.00 41.18 3.20
3126 4362 7.213178 AGAAGAGAGAGAGAGAGATTAACCT 57.787 40.000 0.00 0.00 0.00 3.50
3127 4363 7.643123 AGAAGAGAGAGAGAGAGATTAACCTT 58.357 38.462 0.00 0.00 0.00 3.50
3128 4364 8.778059 AGAAGAGAGAGAGAGAGATTAACCTTA 58.222 37.037 0.00 0.00 0.00 2.69
3129 4365 9.403583 GAAGAGAGAGAGAGAGATTAACCTTAA 57.596 37.037 0.00 0.00 0.00 1.85
3130 4366 8.747538 AGAGAGAGAGAGAGATTAACCTTAAC 57.252 38.462 0.00 0.00 0.00 2.01
3131 4367 7.778382 AGAGAGAGAGAGAGATTAACCTTAACC 59.222 40.741 0.00 0.00 0.00 2.85
3132 4368 7.648770 AGAGAGAGAGAGATTAACCTTAACCT 58.351 38.462 0.00 0.00 0.00 3.50
3133 4369 8.119891 AGAGAGAGAGAGATTAACCTTAACCTT 58.880 37.037 0.00 0.00 0.00 3.50
3134 4370 9.411189 GAGAGAGAGAGATTAACCTTAACCTTA 57.589 37.037 0.00 0.00 0.00 2.69
3135 4371 9.771140 AGAGAGAGAGATTAACCTTAACCTTAA 57.229 33.333 0.00 0.00 0.00 1.85
3136 4372 9.806203 GAGAGAGAGATTAACCTTAACCTTAAC 57.194 37.037 0.00 0.00 0.00 2.01
3137 4373 8.760735 AGAGAGAGATTAACCTTAACCTTAACC 58.239 37.037 0.00 0.00 0.00 2.85
3138 4374 7.859540 AGAGAGATTAACCTTAACCTTAACCC 58.140 38.462 0.00 0.00 0.00 4.11
3139 4375 7.683322 AGAGAGATTAACCTTAACCTTAACCCT 59.317 37.037 0.00 0.00 0.00 4.34
3140 4376 8.922229 AGAGATTAACCTTAACCTTAACCCTA 57.078 34.615 0.00 0.00 0.00 3.53
3141 4377 8.990203 AGAGATTAACCTTAACCTTAACCCTAG 58.010 37.037 0.00 0.00 0.00 3.02
3142 4378 7.571919 AGATTAACCTTAACCTTAACCCTAGC 58.428 38.462 0.00 0.00 0.00 3.42
3147 4383 4.202336 CCTTAACCTTAACCCTAGCCTAGC 60.202 50.000 0.00 0.00 0.00 3.42
3150 4386 1.057471 CTTAACCCTAGCCTAGCCCC 58.943 60.000 0.00 0.00 0.00 5.80
3152 4388 0.105142 TAACCCTAGCCTAGCCCCTG 60.105 60.000 0.00 0.00 0.00 4.45
3283 4546 1.599606 CCCCGACAGACCACAGAGAG 61.600 65.000 0.00 0.00 0.00 3.20
3306 4570 6.880484 AGAAAAATAAACCCGGTGAGTTTTT 58.120 32.000 11.77 14.68 38.37 1.94
3344 4622 1.228510 CCCCATTTGCCTCTCCCTC 59.771 63.158 0.00 0.00 0.00 4.30
3371 4649 2.018542 TCGCCTGGTTTAATTCCTCG 57.981 50.000 0.00 0.00 0.00 4.63
3375 4653 1.677820 CCTGGTTTAATTCCTCGCCGT 60.678 52.381 0.00 0.00 0.00 5.68
3379 4657 1.062148 GTTTAATTCCTCGCCGTCTGC 59.938 52.381 0.00 0.00 0.00 4.26
3380 4658 0.461339 TTAATTCCTCGCCGTCTGCC 60.461 55.000 0.00 0.00 36.24 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.671495 TGTGCATAACGATCAAGCATATTAT 57.329 32.000 0.00 0.00 37.56 1.28
1 2 7.226523 ACTTGTGCATAACGATCAAGCATATTA 59.773 33.333 10.02 0.00 38.99 0.98
5 6 3.691118 ACTTGTGCATAACGATCAAGCAT 59.309 39.130 10.02 0.00 38.99 3.79
6 7 3.073678 ACTTGTGCATAACGATCAAGCA 58.926 40.909 10.02 0.00 38.99 3.91
7 8 3.747099 ACTTGTGCATAACGATCAAGC 57.253 42.857 10.02 0.00 38.99 4.01
8 9 5.034554 ACAACTTGTGCATAACGATCAAG 57.965 39.130 8.86 8.86 40.54 3.02
9 10 5.008118 TCAACAACTTGTGCATAACGATCAA 59.992 36.000 0.00 0.00 0.00 2.57
10 11 4.513318 TCAACAACTTGTGCATAACGATCA 59.487 37.500 0.00 0.00 0.00 2.92
11 12 5.029650 TCAACAACTTGTGCATAACGATC 57.970 39.130 0.00 0.00 0.00 3.69
12 13 4.754618 TCTCAACAACTTGTGCATAACGAT 59.245 37.500 0.00 0.00 0.00 3.73
13 14 4.025229 GTCTCAACAACTTGTGCATAACGA 60.025 41.667 0.00 0.00 0.00 3.85
14 15 4.211389 GTCTCAACAACTTGTGCATAACG 58.789 43.478 0.00 0.00 0.00 3.18
15 16 4.211389 CGTCTCAACAACTTGTGCATAAC 58.789 43.478 0.00 0.00 0.00 1.89
16 17 3.249799 CCGTCTCAACAACTTGTGCATAA 59.750 43.478 0.00 0.00 0.00 1.90
17 18 2.805671 CCGTCTCAACAACTTGTGCATA 59.194 45.455 0.00 0.00 0.00 3.14
18 19 1.603802 CCGTCTCAACAACTTGTGCAT 59.396 47.619 0.00 0.00 0.00 3.96
19 20 1.013596 CCGTCTCAACAACTTGTGCA 58.986 50.000 0.00 0.00 0.00 4.57
20 21 1.003866 GTCCGTCTCAACAACTTGTGC 60.004 52.381 0.00 0.00 0.00 4.57
21 22 1.597663 GGTCCGTCTCAACAACTTGTG 59.402 52.381 0.00 0.00 0.00 3.33
22 23 1.208535 TGGTCCGTCTCAACAACTTGT 59.791 47.619 0.00 0.00 0.00 3.16
23 24 1.948104 TGGTCCGTCTCAACAACTTG 58.052 50.000 0.00 0.00 0.00 3.16
24 25 2.878406 CAATGGTCCGTCTCAACAACTT 59.122 45.455 0.00 0.00 0.00 2.66
25 26 2.158813 ACAATGGTCCGTCTCAACAACT 60.159 45.455 0.00 0.00 0.00 3.16
26 27 2.032030 CACAATGGTCCGTCTCAACAAC 60.032 50.000 0.00 0.00 0.00 3.32
27 28 2.217750 CACAATGGTCCGTCTCAACAA 58.782 47.619 0.00 0.00 0.00 2.83
28 29 1.542328 CCACAATGGTCCGTCTCAACA 60.542 52.381 0.00 0.00 31.35 3.33
29 30 1.156736 CCACAATGGTCCGTCTCAAC 58.843 55.000 0.00 0.00 31.35 3.18
30 31 3.623848 CCACAATGGTCCGTCTCAA 57.376 52.632 0.00 0.00 31.35 3.02
40 41 4.909696 TTACTCACAAACACCACAATGG 57.090 40.909 0.00 0.00 45.02 3.16
41 42 7.769272 AAAATTACTCACAAACACCACAATG 57.231 32.000 0.00 0.00 0.00 2.82
42 43 8.037758 TGAAAAATTACTCACAAACACCACAAT 58.962 29.630 0.00 0.00 0.00 2.71
43 44 7.329717 GTGAAAAATTACTCACAAACACCACAA 59.670 33.333 12.67 0.00 41.35 3.33
44 45 6.809196 GTGAAAAATTACTCACAAACACCACA 59.191 34.615 12.67 0.00 41.35 4.17
45 46 6.809196 TGTGAAAAATTACTCACAAACACCAC 59.191 34.615 16.30 0.00 46.74 4.16
46 47 6.925211 TGTGAAAAATTACTCACAAACACCA 58.075 32.000 16.30 0.00 46.74 4.17
54 55 7.222031 GGAGTTGGTTTGTGAAAAATTACTCAC 59.778 37.037 11.24 11.24 41.93 3.51
55 56 7.262048 GGAGTTGGTTTGTGAAAAATTACTCA 58.738 34.615 0.00 0.00 32.15 3.41
56 57 6.416750 CGGAGTTGGTTTGTGAAAAATTACTC 59.583 38.462 0.00 0.00 0.00 2.59
57 58 6.127563 ACGGAGTTGGTTTGTGAAAAATTACT 60.128 34.615 0.00 0.00 37.78 2.24
58 59 6.037726 ACGGAGTTGGTTTGTGAAAAATTAC 58.962 36.000 0.00 0.00 37.78 1.89
59 60 6.210287 ACGGAGTTGGTTTGTGAAAAATTA 57.790 33.333 0.00 0.00 37.78 1.40
60 61 5.079689 ACGGAGTTGGTTTGTGAAAAATT 57.920 34.783 0.00 0.00 37.78 1.82
61 62 4.729227 ACGGAGTTGGTTTGTGAAAAAT 57.271 36.364 0.00 0.00 37.78 1.82
76 77 3.869065 TGTCTGAACTTTCAAACGGAGT 58.131 40.909 0.00 0.00 36.64 3.85
77 78 4.875544 TTGTCTGAACTTTCAAACGGAG 57.124 40.909 0.00 0.00 36.64 4.63
78 79 5.630661 TTTTGTCTGAACTTTCAAACGGA 57.369 34.783 0.00 0.00 36.64 4.69
79 80 5.861787 AGTTTTTGTCTGAACTTTCAAACGG 59.138 36.000 0.00 0.00 36.64 4.44
80 81 6.927933 AGTTTTTGTCTGAACTTTCAAACG 57.072 33.333 0.00 0.00 36.64 3.60
88 89 8.847196 GGGTTAGATTTAGTTTTTGTCTGAACT 58.153 33.333 0.00 0.00 39.32 3.01
89 90 8.847196 AGGGTTAGATTTAGTTTTTGTCTGAAC 58.153 33.333 0.00 0.00 0.00 3.18
90 91 8.990163 AGGGTTAGATTTAGTTTTTGTCTGAA 57.010 30.769 0.00 0.00 0.00 3.02
91 92 8.990163 AAGGGTTAGATTTAGTTTTTGTCTGA 57.010 30.769 0.00 0.00 0.00 3.27
94 95 8.761497 GCAAAAGGGTTAGATTTAGTTTTTGTC 58.239 33.333 7.80 0.00 36.90 3.18
95 96 8.482943 AGCAAAAGGGTTAGATTTAGTTTTTGT 58.517 29.630 7.80 0.00 36.90 2.83
96 97 8.887036 AGCAAAAGGGTTAGATTTAGTTTTTG 57.113 30.769 0.00 0.00 37.34 2.44
101 102 9.309224 ACATTAAGCAAAAGGGTTAGATTTAGT 57.691 29.630 0.00 0.00 40.30 2.24
102 103 9.573133 CACATTAAGCAAAAGGGTTAGATTTAG 57.427 33.333 0.00 0.00 40.30 1.85
103 104 9.303116 TCACATTAAGCAAAAGGGTTAGATTTA 57.697 29.630 0.00 0.00 40.30 1.40
104 105 8.189119 TCACATTAAGCAAAAGGGTTAGATTT 57.811 30.769 0.00 0.00 40.30 2.17
105 106 7.577616 GCTCACATTAAGCAAAAGGGTTAGATT 60.578 37.037 0.00 0.00 40.30 2.40
106 107 6.127619 GCTCACATTAAGCAAAAGGGTTAGAT 60.128 38.462 0.00 0.00 40.30 1.98
107 108 5.183140 GCTCACATTAAGCAAAAGGGTTAGA 59.817 40.000 0.00 0.00 40.30 2.10
108 109 5.183904 AGCTCACATTAAGCAAAAGGGTTAG 59.816 40.000 0.00 0.00 42.35 2.34
109 110 5.076873 AGCTCACATTAAGCAAAAGGGTTA 58.923 37.500 0.00 0.00 42.35 2.85
110 111 3.897505 AGCTCACATTAAGCAAAAGGGTT 59.102 39.130 0.00 0.00 42.35 4.11
111 112 3.500343 AGCTCACATTAAGCAAAAGGGT 58.500 40.909 0.00 0.00 42.35 4.34
112 113 3.119352 GGAGCTCACATTAAGCAAAAGGG 60.119 47.826 17.19 0.00 42.35 3.95
113 114 3.119352 GGGAGCTCACATTAAGCAAAAGG 60.119 47.826 17.19 0.00 42.35 3.11
114 115 3.119352 GGGGAGCTCACATTAAGCAAAAG 60.119 47.826 19.73 0.00 42.35 2.27
115 116 2.825532 GGGGAGCTCACATTAAGCAAAA 59.174 45.455 19.73 0.00 42.35 2.44
116 117 2.041620 AGGGGAGCTCACATTAAGCAAA 59.958 45.455 19.73 0.00 42.35 3.68
117 118 1.635487 AGGGGAGCTCACATTAAGCAA 59.365 47.619 19.73 0.00 42.35 3.91
118 119 1.210478 GAGGGGAGCTCACATTAAGCA 59.790 52.381 19.73 0.00 42.35 3.91
119 120 1.808133 CGAGGGGAGCTCACATTAAGC 60.808 57.143 19.73 0.00 40.14 3.09
120 121 1.808133 GCGAGGGGAGCTCACATTAAG 60.808 57.143 19.73 7.79 0.00 1.85
121 122 0.178068 GCGAGGGGAGCTCACATTAA 59.822 55.000 19.73 0.00 0.00 1.40
122 123 0.975556 TGCGAGGGGAGCTCACATTA 60.976 55.000 19.73 0.00 35.28 1.90
123 124 2.293318 TGCGAGGGGAGCTCACATT 61.293 57.895 19.73 4.92 35.28 2.71
124 125 2.685017 TGCGAGGGGAGCTCACAT 60.685 61.111 19.73 11.72 35.28 3.21
125 126 2.781431 TAGTGCGAGGGGAGCTCACA 62.781 60.000 19.73 1.51 35.28 3.58
126 127 1.605058 TTAGTGCGAGGGGAGCTCAC 61.605 60.000 17.19 12.85 35.28 3.51
127 128 0.902984 TTTAGTGCGAGGGGAGCTCA 60.903 55.000 17.19 0.00 35.28 4.26
128 129 0.179097 CTTTAGTGCGAGGGGAGCTC 60.179 60.000 4.71 4.71 35.28 4.09
129 130 0.905337 ACTTTAGTGCGAGGGGAGCT 60.905 55.000 0.00 0.00 35.28 4.09
130 131 0.036294 AACTTTAGTGCGAGGGGAGC 60.036 55.000 0.00 0.00 0.00 4.70
131 132 1.676014 CCAACTTTAGTGCGAGGGGAG 60.676 57.143 0.00 0.00 0.00 4.30
132 133 0.323629 CCAACTTTAGTGCGAGGGGA 59.676 55.000 0.00 0.00 0.00 4.81
133 134 1.305930 GCCAACTTTAGTGCGAGGGG 61.306 60.000 0.00 0.00 0.00 4.79
134 135 0.605319 TGCCAACTTTAGTGCGAGGG 60.605 55.000 0.00 0.00 0.00 4.30
135 136 1.234821 TTGCCAACTTTAGTGCGAGG 58.765 50.000 0.00 0.00 0.00 4.63
136 137 2.226437 ACATTGCCAACTTTAGTGCGAG 59.774 45.455 0.00 0.00 0.00 5.03
137 138 2.225491 GACATTGCCAACTTTAGTGCGA 59.775 45.455 0.00 0.00 0.00 5.10
138 139 2.584791 GACATTGCCAACTTTAGTGCG 58.415 47.619 0.00 0.00 0.00 5.34
139 140 2.668279 CGGACATTGCCAACTTTAGTGC 60.668 50.000 0.00 0.00 0.00 4.40
140 141 2.811431 TCGGACATTGCCAACTTTAGTG 59.189 45.455 0.00 0.00 0.00 2.74
141 142 3.074412 CTCGGACATTGCCAACTTTAGT 58.926 45.455 0.00 0.00 0.00 2.24
142 143 2.159517 GCTCGGACATTGCCAACTTTAG 60.160 50.000 0.00 0.00 0.00 1.85
143 144 1.810151 GCTCGGACATTGCCAACTTTA 59.190 47.619 0.00 0.00 0.00 1.85
144 145 0.598065 GCTCGGACATTGCCAACTTT 59.402 50.000 0.00 0.00 0.00 2.66
145 146 1.244019 GGCTCGGACATTGCCAACTT 61.244 55.000 1.45 0.00 45.46 2.66
146 147 1.675641 GGCTCGGACATTGCCAACT 60.676 57.895 1.45 0.00 45.46 3.16
147 148 2.877691 GGCTCGGACATTGCCAAC 59.122 61.111 1.45 0.00 45.46 3.77
150 151 0.463654 TATGTGGCTCGGACATTGCC 60.464 55.000 0.00 0.00 46.26 4.52
151 152 0.657840 GTATGTGGCTCGGACATTGC 59.342 55.000 0.00 0.00 35.62 3.56
152 153 2.315925 AGTATGTGGCTCGGACATTG 57.684 50.000 0.00 0.00 35.62 2.82
153 154 2.632377 CAAGTATGTGGCTCGGACATT 58.368 47.619 0.00 0.00 35.62 2.71
154 155 1.134401 CCAAGTATGTGGCTCGGACAT 60.134 52.381 0.00 0.00 37.75 3.06
155 156 0.249120 CCAAGTATGTGGCTCGGACA 59.751 55.000 0.00 0.00 0.00 4.02
156 157 0.535335 TCCAAGTATGTGGCTCGGAC 59.465 55.000 0.00 0.00 38.68 4.79
157 158 0.824109 CTCCAAGTATGTGGCTCGGA 59.176 55.000 0.00 0.00 38.68 4.55
158 159 0.537188 ACTCCAAGTATGTGGCTCGG 59.463 55.000 0.00 0.00 38.68 4.63
159 160 2.002586 CAACTCCAAGTATGTGGCTCG 58.997 52.381 0.00 0.00 38.68 5.03
160 161 2.027192 TCCAACTCCAAGTATGTGGCTC 60.027 50.000 0.00 0.00 38.68 4.70
161 162 1.985159 TCCAACTCCAAGTATGTGGCT 59.015 47.619 0.00 0.00 38.68 4.75
162 163 2.489938 TCCAACTCCAAGTATGTGGC 57.510 50.000 0.00 0.00 38.68 5.01
163 164 5.256474 AGAATTCCAACTCCAAGTATGTGG 58.744 41.667 0.65 0.00 40.33 4.17
164 165 6.824305 AAGAATTCCAACTCCAAGTATGTG 57.176 37.500 0.65 0.00 0.00 3.21
165 166 9.533831 AATAAAGAATTCCAACTCCAAGTATGT 57.466 29.630 0.65 0.00 0.00 2.29
166 167 9.793252 CAATAAAGAATTCCAACTCCAAGTATG 57.207 33.333 0.65 0.00 0.00 2.39
167 168 8.470002 GCAATAAAGAATTCCAACTCCAAGTAT 58.530 33.333 0.65 0.00 0.00 2.12
168 169 7.361713 CGCAATAAAGAATTCCAACTCCAAGTA 60.362 37.037 0.65 0.00 0.00 2.24
169 170 6.570378 CGCAATAAAGAATTCCAACTCCAAGT 60.570 38.462 0.65 0.00 0.00 3.16
170 171 5.801947 CGCAATAAAGAATTCCAACTCCAAG 59.198 40.000 0.65 0.00 0.00 3.61
171 172 5.242838 ACGCAATAAAGAATTCCAACTCCAA 59.757 36.000 0.65 0.00 0.00 3.53
172 173 4.764823 ACGCAATAAAGAATTCCAACTCCA 59.235 37.500 0.65 0.00 0.00 3.86
173 174 5.310720 ACGCAATAAAGAATTCCAACTCC 57.689 39.130 0.65 0.00 0.00 3.85
174 175 7.637709 AAAACGCAATAAAGAATTCCAACTC 57.362 32.000 0.65 0.00 0.00 3.01
202 203 4.039245 ACGAGTGAGAATTTTGTCCTCTCA 59.961 41.667 0.00 0.00 42.49 3.27
203 204 4.561105 ACGAGTGAGAATTTTGTCCTCTC 58.439 43.478 0.00 0.00 36.85 3.20
204 205 4.608948 ACGAGTGAGAATTTTGTCCTCT 57.391 40.909 0.00 0.00 0.00 3.69
205 206 6.969828 ATAACGAGTGAGAATTTTGTCCTC 57.030 37.500 0.00 0.00 0.00 3.71
206 207 7.745620 AAATAACGAGTGAGAATTTTGTCCT 57.254 32.000 0.00 0.00 0.00 3.85
207 208 8.073768 TGAAAATAACGAGTGAGAATTTTGTCC 58.926 33.333 0.00 0.00 31.70 4.02
208 209 9.445786 TTGAAAATAACGAGTGAGAATTTTGTC 57.554 29.630 0.00 0.00 31.70 3.18
209 210 9.796120 TTTGAAAATAACGAGTGAGAATTTTGT 57.204 25.926 0.00 0.00 31.70 2.83
237 238 9.613428 TGATTCTTGGTGATTTATCGTATCTTT 57.387 29.630 0.00 0.00 0.00 2.52
238 239 9.784531 ATGATTCTTGGTGATTTATCGTATCTT 57.215 29.630 0.00 0.00 0.00 2.40
239 240 9.784531 AATGATTCTTGGTGATTTATCGTATCT 57.215 29.630 0.00 0.00 0.00 1.98
243 244 9.265901 CTCTAATGATTCTTGGTGATTTATCGT 57.734 33.333 0.00 0.00 0.00 3.73
244 245 8.715998 CCTCTAATGATTCTTGGTGATTTATCG 58.284 37.037 0.00 0.00 0.00 2.92
245 246 9.566432 ACCTCTAATGATTCTTGGTGATTTATC 57.434 33.333 0.00 0.00 0.00 1.75
247 248 9.832445 GTACCTCTAATGATTCTTGGTGATTTA 57.168 33.333 6.27 0.00 0.00 1.40
248 249 8.552296 AGTACCTCTAATGATTCTTGGTGATTT 58.448 33.333 6.27 0.00 0.00 2.17
249 250 8.095452 AGTACCTCTAATGATTCTTGGTGATT 57.905 34.615 6.27 0.00 0.00 2.57
250 251 7.682787 AGTACCTCTAATGATTCTTGGTGAT 57.317 36.000 6.27 0.00 0.00 3.06
251 252 8.783660 ATAGTACCTCTAATGATTCTTGGTGA 57.216 34.615 6.27 0.00 31.94 4.02
252 253 8.865090 AGATAGTACCTCTAATGATTCTTGGTG 58.135 37.037 6.27 0.00 31.94 4.17
253 254 9.440761 AAGATAGTACCTCTAATGATTCTTGGT 57.559 33.333 0.00 0.00 31.94 3.67
254 255 9.703892 CAAGATAGTACCTCTAATGATTCTTGG 57.296 37.037 0.00 0.00 37.24 3.61
257 258 9.875708 AGACAAGATAGTACCTCTAATGATTCT 57.124 33.333 0.00 0.00 31.94 2.40
268 269 9.924010 ACATCTTAACTAGACAAGATAGTACCT 57.076 33.333 17.43 0.39 39.02 3.08
276 277 9.591792 CATCATGAACATCTTAACTAGACAAGA 57.408 33.333 0.00 11.43 35.19 3.02
277 278 9.591792 TCATCATGAACATCTTAACTAGACAAG 57.408 33.333 0.00 0.00 35.19 3.16
309 310 2.315925 ATATGCAAGACTCCCGTGTG 57.684 50.000 0.00 0.00 0.00 3.82
311 312 5.047306 TCCTATAATATGCAAGACTCCCGTG 60.047 44.000 0.00 0.00 0.00 4.94
314 315 7.124901 TGAGATCCTATAATATGCAAGACTCCC 59.875 40.741 0.00 0.00 0.00 4.30
361 362 9.892130 CCTTTTATAAGGTAATCTTGACAGTCT 57.108 33.333 1.31 0.00 45.01 3.24
414 417 7.362920 CCACTCTACCCCAAAATTCACTATTTG 60.363 40.741 0.00 0.00 36.57 2.32
428 431 3.576861 CATGTATCTCCACTCTACCCCA 58.423 50.000 0.00 0.00 0.00 4.96
432 435 8.090831 TCATTAATGCATGTATCTCCACTCTAC 58.909 37.037 10.76 0.00 0.00 2.59
433 436 8.193953 TCATTAATGCATGTATCTCCACTCTA 57.806 34.615 10.76 0.00 0.00 2.43
445 448 3.745975 CCGTACGGATCATTAATGCATGT 59.254 43.478 30.64 8.68 37.50 3.21
455 458 1.827394 CCAACCCCGTACGGATCAT 59.173 57.895 35.41 15.28 37.50 2.45
461 464 3.976902 GACGAGCCAACCCCGTACG 62.977 68.421 8.69 8.69 36.60 3.67
468 471 2.092882 GTACGCTGACGAGCCAACC 61.093 63.158 0.00 0.00 42.91 3.77
502 505 4.879545 GGCGGTCAGAAAGTTGGATAATTA 59.120 41.667 0.00 0.00 0.00 1.40
503 506 3.694566 GGCGGTCAGAAAGTTGGATAATT 59.305 43.478 0.00 0.00 0.00 1.40
504 507 3.279434 GGCGGTCAGAAAGTTGGATAAT 58.721 45.455 0.00 0.00 0.00 1.28
505 508 2.617021 GGGCGGTCAGAAAGTTGGATAA 60.617 50.000 0.00 0.00 0.00 1.75
506 509 1.065709 GGGCGGTCAGAAAGTTGGATA 60.066 52.381 0.00 0.00 0.00 2.59
508 511 1.072505 GGGCGGTCAGAAAGTTGGA 59.927 57.895 0.00 0.00 0.00 3.53
509 512 0.323629 TAGGGCGGTCAGAAAGTTGG 59.676 55.000 0.00 0.00 0.00 3.77
511 514 0.323957 GGTAGGGCGGTCAGAAAGTT 59.676 55.000 0.00 0.00 0.00 2.66
512 515 0.834687 TGGTAGGGCGGTCAGAAAGT 60.835 55.000 0.00 0.00 0.00 2.66
513 516 0.541863 ATGGTAGGGCGGTCAGAAAG 59.458 55.000 0.00 0.00 0.00 2.62
514 517 0.251916 CATGGTAGGGCGGTCAGAAA 59.748 55.000 0.00 0.00 0.00 2.52
516 519 2.731571 GCATGGTAGGGCGGTCAGA 61.732 63.158 0.00 0.00 0.00 3.27
517 520 2.203070 GCATGGTAGGGCGGTCAG 60.203 66.667 0.00 0.00 0.00 3.51
519 522 3.480133 AGGCATGGTAGGGCGGTC 61.480 66.667 0.00 0.00 35.71 4.79
520 523 3.797353 CAGGCATGGTAGGGCGGT 61.797 66.667 0.00 0.00 35.71 5.68
521 524 4.569180 CCAGGCATGGTAGGGCGG 62.569 72.222 9.85 0.00 42.17 6.13
530 533 0.321564 TTCGGACTTGACCAGGCATG 60.322 55.000 0.00 0.00 27.54 4.06
531 534 0.620556 ATTCGGACTTGACCAGGCAT 59.379 50.000 0.00 0.00 27.54 4.40
532 535 0.036388 GATTCGGACTTGACCAGGCA 60.036 55.000 0.00 0.00 27.54 4.75
533 536 1.084370 CGATTCGGACTTGACCAGGC 61.084 60.000 0.00 0.00 0.00 4.85
536 545 0.320374 AAGCGATTCGGACTTGACCA 59.680 50.000 8.34 0.00 0.00 4.02
542 551 5.416947 ACAATAAACTAAGCGATTCGGACT 58.583 37.500 8.34 0.00 0.00 3.85
546 555 8.601243 AAAATGACAATAAACTAAGCGATTCG 57.399 30.769 0.62 0.62 0.00 3.34
595 604 2.297701 GAACAAACTTCCTGCTGACCA 58.702 47.619 0.00 0.00 0.00 4.02
600 609 0.555769 TGGGGAACAAACTTCCTGCT 59.444 50.000 0.00 0.00 38.61 4.24
630 639 9.574516 ACAATCAACAACTTTATTTAGAGACCT 57.425 29.630 0.00 0.00 0.00 3.85
634 643 9.831737 CCAGACAATCAACAACTTTATTTAGAG 57.168 33.333 0.00 0.00 0.00 2.43
636 645 8.081633 TGCCAGACAATCAACAACTTTATTTAG 58.918 33.333 0.00 0.00 0.00 1.85
638 647 6.815089 TGCCAGACAATCAACAACTTTATTT 58.185 32.000 0.00 0.00 0.00 1.40
639 648 6.403866 TGCCAGACAATCAACAACTTTATT 57.596 33.333 0.00 0.00 0.00 1.40
643 660 4.160252 ACTTTGCCAGACAATCAACAACTT 59.840 37.500 0.00 0.00 38.31 2.66
661 678 3.926527 TCGCTCACAGCAACTATACTTTG 59.073 43.478 0.00 0.00 42.58 2.77
664 681 2.755655 ACTCGCTCACAGCAACTATACT 59.244 45.455 0.00 0.00 42.58 2.12
670 687 0.441533 CATGACTCGCTCACAGCAAC 59.558 55.000 0.00 0.00 42.58 4.17
671 688 0.671472 CCATGACTCGCTCACAGCAA 60.671 55.000 0.00 0.00 42.58 3.91
672 689 1.079612 CCATGACTCGCTCACAGCA 60.080 57.895 0.00 0.00 42.58 4.41
673 690 2.459442 GCCATGACTCGCTCACAGC 61.459 63.158 0.00 0.00 38.02 4.40
674 691 1.082679 CAGCCATGACTCGCTCACAG 61.083 60.000 0.00 0.00 31.40 3.66
675 692 1.079612 CAGCCATGACTCGCTCACA 60.080 57.895 0.00 0.00 31.40 3.58
676 693 0.173481 TACAGCCATGACTCGCTCAC 59.827 55.000 0.00 0.00 31.40 3.51
677 694 1.114627 ATACAGCCATGACTCGCTCA 58.885 50.000 0.00 0.00 31.40 4.26
678 695 1.067669 TCATACAGCCATGACTCGCTC 59.932 52.381 0.00 0.00 31.40 5.03
679 696 1.114627 TCATACAGCCATGACTCGCT 58.885 50.000 0.00 0.00 35.10 4.93
680 697 3.667448 TCATACAGCCATGACTCGC 57.333 52.632 0.00 0.00 29.93 5.03
685 702 3.979101 TGTCAAGTCATACAGCCATGA 57.021 42.857 0.00 0.00 32.50 3.07
686 703 4.696877 TCTTTGTCAAGTCATACAGCCATG 59.303 41.667 0.00 0.00 0.00 3.66
687 704 4.910195 TCTTTGTCAAGTCATACAGCCAT 58.090 39.130 0.00 0.00 0.00 4.40
688 705 4.350368 TCTTTGTCAAGTCATACAGCCA 57.650 40.909 0.00 0.00 0.00 4.75
689 706 4.083271 GGTTCTTTGTCAAGTCATACAGCC 60.083 45.833 0.00 0.00 0.00 4.85
690 707 4.083271 GGGTTCTTTGTCAAGTCATACAGC 60.083 45.833 0.00 0.00 0.00 4.40
691 708 4.455877 GGGGTTCTTTGTCAAGTCATACAG 59.544 45.833 0.00 0.00 0.00 2.74
692 709 4.141367 TGGGGTTCTTTGTCAAGTCATACA 60.141 41.667 0.00 0.00 0.00 2.29
693 710 4.394729 TGGGGTTCTTTGTCAAGTCATAC 58.605 43.478 0.00 0.00 0.00 2.39
694 711 4.715534 TGGGGTTCTTTGTCAAGTCATA 57.284 40.909 0.00 0.00 0.00 2.15
704 721 5.913137 TGCTTAATACATGGGGTTCTTTG 57.087 39.130 0.00 0.00 0.00 2.77
747 764 8.140112 AGTAGTTTATTCCAAGATGACAGAGT 57.860 34.615 0.00 0.00 0.00 3.24
748 765 7.708752 GGAGTAGTTTATTCCAAGATGACAGAG 59.291 40.741 0.00 0.00 34.92 3.35
750 767 6.763610 GGGAGTAGTTTATTCCAAGATGACAG 59.236 42.308 0.93 0.00 36.38 3.51
751 768 6.443849 AGGGAGTAGTTTATTCCAAGATGACA 59.556 38.462 0.93 0.00 36.38 3.58
752 769 6.890293 AGGGAGTAGTTTATTCCAAGATGAC 58.110 40.000 0.93 0.00 36.38 3.06
754 771 6.989169 CAGAGGGAGTAGTTTATTCCAAGATG 59.011 42.308 0.93 0.00 36.38 2.90
755 772 6.674419 ACAGAGGGAGTAGTTTATTCCAAGAT 59.326 38.462 0.93 0.00 36.38 2.40
756 773 6.023603 ACAGAGGGAGTAGTTTATTCCAAGA 58.976 40.000 0.93 0.00 36.38 3.02
757 774 6.301169 ACAGAGGGAGTAGTTTATTCCAAG 57.699 41.667 0.93 0.00 36.38 3.61
758 775 7.801893 TTACAGAGGGAGTAGTTTATTCCAA 57.198 36.000 0.93 0.00 36.38 3.53
761 778 9.939802 TTTCTTTACAGAGGGAGTAGTTTATTC 57.060 33.333 0.00 0.00 0.00 1.75
771 788 9.757227 CACTCTTATATTTCTTTACAGAGGGAG 57.243 37.037 0.00 0.00 32.92 4.30
804 821 9.955102 TTCCGAGATCAATAGTAGTATTAGCTA 57.045 33.333 2.44 0.00 0.00 3.32
805 822 8.865420 TTCCGAGATCAATAGTAGTATTAGCT 57.135 34.615 2.44 0.00 0.00 3.32
806 823 9.909644 TTTTCCGAGATCAATAGTAGTATTAGC 57.090 33.333 2.44 0.00 0.00 3.09
832 857 6.587608 GCATACTGTCAATTTAGCTGCTTTTT 59.412 34.615 7.79 0.00 0.00 1.94
833 858 6.095377 GCATACTGTCAATTTAGCTGCTTTT 58.905 36.000 7.79 0.00 0.00 2.27
834 859 5.183713 TGCATACTGTCAATTTAGCTGCTTT 59.816 36.000 7.79 0.00 31.17 3.51
836 861 4.264253 TGCATACTGTCAATTTAGCTGCT 58.736 39.130 7.57 7.57 31.17 4.24
837 862 4.095483 ACTGCATACTGTCAATTTAGCTGC 59.905 41.667 0.00 0.00 0.00 5.25
838 863 5.808042 ACTGCATACTGTCAATTTAGCTG 57.192 39.130 0.00 0.00 0.00 4.24
840 865 8.964420 TTTTTACTGCATACTGTCAATTTAGC 57.036 30.769 0.00 0.00 0.00 3.09
841 866 9.065871 GCTTTTTACTGCATACTGTCAATTTAG 57.934 33.333 0.00 0.00 0.00 1.85
848 874 5.179368 TGACTGCTTTTTACTGCATACTGTC 59.821 40.000 0.00 0.00 38.59 3.51
854 880 3.138304 TCGTGACTGCTTTTTACTGCAT 58.862 40.909 0.00 0.00 38.59 3.96
859 885 5.530519 TGATGATCGTGACTGCTTTTTAC 57.469 39.130 0.00 0.00 0.00 2.01
870 896 1.733912 GCAACAAGCTGATGATCGTGA 59.266 47.619 0.00 0.00 41.15 4.35
888 935 2.359850 GGATCCAACGGCTGTGCA 60.360 61.111 6.95 0.00 0.00 4.57
1305 1356 1.068417 CTTGTTGACGTCCGGGTGA 59.932 57.895 14.12 0.00 0.00 4.02
1336 1387 0.621571 TGGATGTGAAGAGGAGGGGG 60.622 60.000 0.00 0.00 0.00 5.40
1395 1447 5.178096 TGTCAGCAAAATCTCCATTAGGA 57.822 39.130 0.00 0.00 43.21 2.94
1398 1450 5.314923 GCTTGTCAGCAAAATCTCCATTA 57.685 39.130 0.00 0.00 46.49 1.90
1419 1473 1.383523 GCCTACATTGAACCAGGAGC 58.616 55.000 0.00 0.00 0.00 4.70
1574 1634 3.181461 ACCCATAGAAATCCTCTTCTGCG 60.181 47.826 0.00 0.00 36.34 5.18
1644 1720 9.981460 AAAATTCCTAGCCCCAGAATAATATAG 57.019 33.333 0.00 0.00 30.21 1.31
1680 1756 0.804989 GAGGCCCATTTCAGTTCACG 59.195 55.000 0.00 0.00 0.00 4.35
1695 1771 0.326264 ATCAACCACTGGTCAGAGGC 59.674 55.000 13.12 0.00 42.03 4.70
1696 1772 1.625315 TGATCAACCACTGGTCAGAGG 59.375 52.381 11.90 11.90 40.41 3.69
1732 1808 1.066858 TGGCACTAACACTAGCAGAGC 60.067 52.381 0.00 0.00 0.00 4.09
1774 1853 1.450312 GGATCCACAGGCAGTTCCG 60.450 63.158 6.95 0.00 40.77 4.30
1783 1862 4.209538 TGCAATAGGAATTGGATCCACAG 58.790 43.478 15.91 0.00 42.39 3.66
1787 1871 5.859205 AAACTGCAATAGGAATTGGATCC 57.141 39.130 4.20 4.20 41.85 3.36
1791 1875 9.090692 CAGATTTAAAACTGCAATAGGAATTGG 57.909 33.333 11.93 0.00 42.39 3.16
1811 1904 4.348168 ACCATCTTATCTACCGGCAGATTT 59.652 41.667 22.21 2.59 36.63 2.17
1990 2093 4.163458 ACTTACTGACAGTTCTTCCCACAA 59.837 41.667 14.50 0.00 0.00 3.33
2030 2137 7.226325 TCCAAAAGTAAATTTTCCAATGTGCAG 59.774 33.333 0.00 0.00 39.11 4.41
2040 2147 8.289618 GCCATCCTTTTCCAAAAGTAAATTTTC 58.710 33.333 10.24 0.00 42.92 2.29
2044 2151 6.432403 TGCCATCCTTTTCCAAAAGTAAAT 57.568 33.333 10.24 0.27 42.92 1.40
2060 2167 1.468054 GCAAGTCGACATTTGCCATCC 60.468 52.381 24.50 4.43 42.88 3.51
2074 2183 9.804758 ACATTATAAGTGTACTTCTAGCAAGTC 57.195 33.333 9.83 5.04 37.40 3.01
2087 2199 5.496556 ACCAGCTGCAACATTATAAGTGTA 58.503 37.500 8.66 0.00 0.00 2.90
2091 2203 6.683974 AGTTACCAGCTGCAACATTATAAG 57.316 37.500 23.44 4.83 0.00 1.73
2125 2237 8.884124 ATAAGTATAATTTGCATGGGCTACAT 57.116 30.769 0.00 0.00 41.57 2.29
2132 2244 9.403110 GAGCAGAAATAAGTATAATTTGCATGG 57.597 33.333 8.67 0.00 0.00 3.66
2159 2271 2.182842 CCTCGCCAATAGCCTGCAC 61.183 63.158 0.00 0.00 38.78 4.57
2162 2274 0.179000 AACTCCTCGCCAATAGCCTG 59.821 55.000 0.00 0.00 38.78 4.85
2222 2334 1.519455 CATCGTCTTCCTCGGTGCC 60.519 63.158 0.00 0.00 32.86 5.01
2299 2411 2.035442 GTCGGAGCTGCTTGTTCCC 61.035 63.158 2.53 0.00 42.27 3.97
2347 2459 0.036577 GCTCCTTCTTCAGCTGCTCA 60.037 55.000 9.47 0.00 32.48 4.26
2393 2505 0.660488 GCCATCGTTGTGTGTTGTCA 59.340 50.000 0.00 0.00 0.00 3.58
2395 2507 1.098869 TTGCCATCGTTGTGTGTTGT 58.901 45.000 0.00 0.00 0.00 3.32
2397 2509 1.065401 CAGTTGCCATCGTTGTGTGTT 59.935 47.619 0.00 0.00 0.00 3.32
2401 2513 0.386352 CTGCAGTTGCCATCGTTGTG 60.386 55.000 5.25 0.00 41.18 3.33
2404 2516 2.956987 GCTGCAGTTGCCATCGTT 59.043 55.556 16.64 0.00 41.18 3.85
2419 2531 1.298667 GGTACCAATCACGGTGGCT 59.701 57.895 7.15 0.00 40.39 4.75
2426 2538 0.180406 ATCGGGCTGGTACCAATCAC 59.820 55.000 17.11 10.85 0.00 3.06
2431 2543 1.195442 TGAACATCGGGCTGGTACCA 61.195 55.000 15.39 15.39 0.00 3.25
2439 2551 1.072331 ACCTCCATATGAACATCGGGC 59.928 52.381 3.65 0.00 0.00 6.13
2462 2574 2.815308 CCGATCCGGGAGAACAGG 59.185 66.667 0.00 0.00 44.15 4.00
2479 2597 1.758862 AGTACCTACCATTACCGCCAC 59.241 52.381 0.00 0.00 0.00 5.01
2525 2643 1.607178 TCGTCCCACCGGAAAGCTA 60.607 57.895 9.46 0.00 40.92 3.32
2576 2694 1.517257 CTGCAGCCCTACGAACGAG 60.517 63.158 0.00 0.00 0.00 4.18
2578 2696 0.949105 AAACTGCAGCCCTACGAACG 60.949 55.000 15.27 0.00 0.00 3.95
2640 2760 8.852135 CCCCAAAATTCAAGTAAAACTGTACTA 58.148 33.333 0.00 0.00 33.05 1.82
2644 2764 6.155393 TCACCCCAAAATTCAAGTAAAACTGT 59.845 34.615 0.00 0.00 0.00 3.55
2652 2772 4.294347 TCCTTTCACCCCAAAATTCAAGT 58.706 39.130 0.00 0.00 0.00 3.16
2657 2777 4.294347 TCAGTTCCTTTCACCCCAAAATT 58.706 39.130 0.00 0.00 0.00 1.82
2662 2890 2.944129 CTTTCAGTTCCTTTCACCCCA 58.056 47.619 0.00 0.00 0.00 4.96
2673 2901 1.804748 CAGTTACCGGGCTTTCAGTTC 59.195 52.381 6.32 0.00 0.00 3.01
2680 2908 0.249398 CTACTGCAGTTACCGGGCTT 59.751 55.000 27.06 0.00 0.00 4.35
2689 2917 1.614317 GGAATGCCACCTACTGCAGTT 60.614 52.381 27.06 3.70 41.46 3.16
2691 2919 0.254178 AGGAATGCCACCTACTGCAG 59.746 55.000 13.48 13.48 41.46 4.41
2693 2921 1.379642 GCAGGAATGCCACCTACTGC 61.380 60.000 0.00 0.00 43.50 4.40
2694 2922 1.091771 CGCAGGAATGCCACCTACTG 61.092 60.000 0.00 0.00 35.84 2.74
2695 2923 1.221840 CGCAGGAATGCCACCTACT 59.778 57.895 0.00 0.00 35.84 2.57
2718 2946 4.058124 TCATCCATGATTCCGTCGAAATC 58.942 43.478 0.00 0.00 34.40 2.17
2729 2991 6.718454 GTGATTATGTCCCTTCATCCATGATT 59.282 38.462 0.00 0.00 36.56 2.57
2732 2994 5.240183 GTGTGATTATGTCCCTTCATCCATG 59.760 44.000 0.00 0.00 0.00 3.66
2740 3002 3.992943 TTCGGTGTGATTATGTCCCTT 57.007 42.857 0.00 0.00 0.00 3.95
2742 3004 3.869065 TCTTTCGGTGTGATTATGTCCC 58.131 45.455 0.00 0.00 0.00 4.46
2743 3005 4.201822 GCTTCTTTCGGTGTGATTATGTCC 60.202 45.833 0.00 0.00 0.00 4.02
2744 3006 4.391830 TGCTTCTTTCGGTGTGATTATGTC 59.608 41.667 0.00 0.00 0.00 3.06
2745 3007 4.323417 TGCTTCTTTCGGTGTGATTATGT 58.677 39.130 0.00 0.00 0.00 2.29
2747 3009 3.375299 GCTGCTTCTTTCGGTGTGATTAT 59.625 43.478 0.00 0.00 0.00 1.28
2748 3010 2.742053 GCTGCTTCTTTCGGTGTGATTA 59.258 45.455 0.00 0.00 0.00 1.75
2751 3013 1.221466 CGCTGCTTCTTTCGGTGTGA 61.221 55.000 0.00 0.00 0.00 3.58
2752 3014 1.205064 CGCTGCTTCTTTCGGTGTG 59.795 57.895 0.00 0.00 0.00 3.82
2753 3015 1.961277 CCGCTGCTTCTTTCGGTGT 60.961 57.895 0.00 0.00 37.33 4.16
2754 3016 2.863153 CCGCTGCTTCTTTCGGTG 59.137 61.111 0.00 0.00 37.33 4.94
2756 3018 1.497722 GAACCGCTGCTTCTTTCGG 59.502 57.895 0.00 0.00 46.61 4.30
2757 3019 1.227999 TGGAACCGCTGCTTCTTTCG 61.228 55.000 0.00 0.00 0.00 3.46
2758 3020 1.168714 ATGGAACCGCTGCTTCTTTC 58.831 50.000 0.00 0.00 0.00 2.62
2759 3021 1.620822 AATGGAACCGCTGCTTCTTT 58.379 45.000 0.00 0.00 0.00 2.52
2760 3022 1.620822 AAATGGAACCGCTGCTTCTT 58.379 45.000 0.00 0.00 0.00 2.52
2761 3023 1.620822 AAAATGGAACCGCTGCTTCT 58.379 45.000 0.00 0.00 0.00 2.85
2762 3024 2.029918 AGAAAAATGGAACCGCTGCTTC 60.030 45.455 0.00 0.00 0.00 3.86
2763 3025 1.963515 AGAAAAATGGAACCGCTGCTT 59.036 42.857 0.00 0.00 0.00 3.91
2765 3027 2.438868 AAGAAAAATGGAACCGCTGC 57.561 45.000 0.00 0.00 0.00 5.25
2766 3028 4.808364 TCAAAAAGAAAAATGGAACCGCTG 59.192 37.500 0.00 0.00 0.00 5.18
2767 3029 4.808895 GTCAAAAAGAAAAATGGAACCGCT 59.191 37.500 0.00 0.00 0.00 5.52
2768 3030 4.025229 GGTCAAAAAGAAAAATGGAACCGC 60.025 41.667 0.00 0.00 0.00 5.68
2769 3031 4.208253 CGGTCAAAAAGAAAAATGGAACCG 59.792 41.667 0.00 0.00 0.00 4.44
2770 3032 4.509970 CCGGTCAAAAAGAAAAATGGAACC 59.490 41.667 0.00 0.00 0.00 3.62
2771 3033 4.509970 CCCGGTCAAAAAGAAAAATGGAAC 59.490 41.667 0.00 0.00 0.00 3.62
2772 3034 4.162509 ACCCGGTCAAAAAGAAAAATGGAA 59.837 37.500 0.00 0.00 0.00 3.53
2779 3041 1.679153 GCTGACCCGGTCAAAAAGAAA 59.321 47.619 20.81 0.00 42.26 2.52
2780 3042 1.314730 GCTGACCCGGTCAAAAAGAA 58.685 50.000 20.81 0.00 42.26 2.52
2791 3053 1.644786 GAAATGGAACCGCTGACCCG 61.645 60.000 0.00 0.00 0.00 5.28
2792 3054 1.644786 CGAAATGGAACCGCTGACCC 61.645 60.000 0.00 0.00 0.00 4.46
2793 3055 0.953960 ACGAAATGGAACCGCTGACC 60.954 55.000 0.00 0.00 0.00 4.02
2794 3056 0.872388 AACGAAATGGAACCGCTGAC 59.128 50.000 0.00 0.00 0.00 3.51
2795 3057 1.265635 CAAACGAAATGGAACCGCTGA 59.734 47.619 0.00 0.00 0.00 4.26
2798 3060 1.002251 TCACAAACGAAATGGAACCGC 60.002 47.619 0.00 0.00 0.00 5.68
2799 3061 2.546368 TCTCACAAACGAAATGGAACCG 59.454 45.455 0.00 0.00 0.00 4.44
2801 3063 5.418310 TTCTCTCACAAACGAAATGGAAC 57.582 39.130 0.00 0.00 0.00 3.62
2802 3064 5.530915 ACATTCTCTCACAAACGAAATGGAA 59.469 36.000 0.00 0.00 0.00 3.53
2803 3065 5.063204 ACATTCTCTCACAAACGAAATGGA 58.937 37.500 0.00 0.00 0.00 3.41
2804 3066 5.362556 ACATTCTCTCACAAACGAAATGG 57.637 39.130 0.00 0.00 0.00 3.16
2808 3070 4.039973 AGGGTACATTCTCTCACAAACGAA 59.960 41.667 0.00 0.00 0.00 3.85
2809 3071 3.576982 AGGGTACATTCTCTCACAAACGA 59.423 43.478 0.00 0.00 0.00 3.85
2810 3072 3.926616 AGGGTACATTCTCTCACAAACG 58.073 45.455 0.00 0.00 0.00 3.60
2811 3073 4.254492 GGAGGGTACATTCTCTCACAAAC 58.746 47.826 0.00 0.00 0.00 2.93
2812 3074 3.056107 CGGAGGGTACATTCTCTCACAAA 60.056 47.826 0.00 0.00 0.00 2.83
2814 3076 2.100197 CGGAGGGTACATTCTCTCACA 58.900 52.381 0.00 0.00 0.00 3.58
2815 3077 2.099427 GACGGAGGGTACATTCTCTCAC 59.901 54.545 0.00 0.00 0.00 3.51
2816 3078 2.376109 GACGGAGGGTACATTCTCTCA 58.624 52.381 0.00 0.00 0.00 3.27
2817 3079 1.682323 GGACGGAGGGTACATTCTCTC 59.318 57.143 0.00 0.00 0.00 3.20
2818 3080 1.777941 GGACGGAGGGTACATTCTCT 58.222 55.000 0.00 0.00 0.00 3.10
2819 3081 0.384669 CGGACGGAGGGTACATTCTC 59.615 60.000 0.00 0.00 0.00 2.87
2820 3082 0.324091 ACGGACGGAGGGTACATTCT 60.324 55.000 0.00 0.00 0.00 2.40
2821 3083 0.101939 GACGGACGGAGGGTACATTC 59.898 60.000 0.00 0.00 0.00 2.67
2822 3084 1.325476 GGACGGACGGAGGGTACATT 61.325 60.000 0.00 0.00 0.00 2.71
2826 3088 2.762969 TTTCGGACGGACGGAGGGTA 62.763 60.000 0.00 0.00 0.00 3.69
2827 3089 4.666253 TTCGGACGGACGGAGGGT 62.666 66.667 0.00 0.00 0.00 4.34
2829 3091 0.457035 TATTTTCGGACGGACGGAGG 59.543 55.000 0.00 0.00 0.00 4.30
2834 3096 4.737353 AAACAAGTATTTTCGGACGGAC 57.263 40.909 0.00 0.00 0.00 4.79
2909 3416 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
2912 3419 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
2916 3668 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2920 3672 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2921 3673 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2928 3680 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
2929 3681 1.236628 CATACTACTCCCTCCGTCCG 58.763 60.000 0.00 0.00 0.00 4.79
2949 4167 1.269448 GGCACGCCATTTTTCTTCAGA 59.731 47.619 2.36 0.00 35.81 3.27
2950 4168 1.669795 GGGCACGCCATTTTTCTTCAG 60.670 52.381 10.83 0.00 37.98 3.02
2953 4171 0.755686 TTGGGCACGCCATTTTTCTT 59.244 45.000 10.83 0.00 37.98 2.52
2954 4172 0.975887 ATTGGGCACGCCATTTTTCT 59.024 45.000 10.83 0.00 37.98 2.52
2956 4174 2.694213 GTAATTGGGCACGCCATTTTT 58.306 42.857 10.83 0.63 37.98 1.94
2957 4175 1.403514 CGTAATTGGGCACGCCATTTT 60.404 47.619 10.83 2.39 37.98 1.82
2962 4180 3.514362 CCCGTAATTGGGCACGCC 61.514 66.667 0.00 0.00 43.70 5.68
2974 4192 1.616865 CTTCAGTTCAGTCACCCCGTA 59.383 52.381 0.00 0.00 0.00 4.02
2977 4195 1.056660 TCCTTCAGTTCAGTCACCCC 58.943 55.000 0.00 0.00 0.00 4.95
2978 4196 2.930826 TTCCTTCAGTTCAGTCACCC 57.069 50.000 0.00 0.00 0.00 4.61
2979 4197 4.061596 CTCTTTCCTTCAGTTCAGTCACC 58.938 47.826 0.00 0.00 0.00 4.02
2980 4198 4.061596 CCTCTTTCCTTCAGTTCAGTCAC 58.938 47.826 0.00 0.00 0.00 3.67
2986 4204 3.328050 TCCTTCCCTCTTTCCTTCAGTTC 59.672 47.826 0.00 0.00 0.00 3.01
2994 4212 5.540337 AGAAACAAAATCCTTCCCTCTTTCC 59.460 40.000 0.00 0.00 0.00 3.13
2997 4215 8.727100 AAATAGAAACAAAATCCTTCCCTCTT 57.273 30.769 0.00 0.00 0.00 2.85
3016 4234 5.556758 CGGTTCGTTCGTCAACAAAAATAGA 60.557 40.000 0.00 0.00 32.14 1.98
3017 4235 4.605594 CGGTTCGTTCGTCAACAAAAATAG 59.394 41.667 0.00 0.00 32.14 1.73
3018 4236 4.516359 CGGTTCGTTCGTCAACAAAAATA 58.484 39.130 0.00 0.00 32.14 1.40
3019 4237 3.356145 CGGTTCGTTCGTCAACAAAAAT 58.644 40.909 0.00 0.00 32.14 1.82
3020 4238 2.475852 CCGGTTCGTTCGTCAACAAAAA 60.476 45.455 0.00 0.00 32.14 1.94
3021 4239 1.062294 CCGGTTCGTTCGTCAACAAAA 59.938 47.619 0.00 0.00 32.14 2.44
3022 4240 0.651551 CCGGTTCGTTCGTCAACAAA 59.348 50.000 0.00 0.00 32.14 2.83
3023 4241 1.764180 GCCGGTTCGTTCGTCAACAA 61.764 55.000 1.90 0.00 32.14 2.83
3024 4242 2.239124 GCCGGTTCGTTCGTCAACA 61.239 57.895 1.90 0.00 32.14 3.33
3025 4243 2.547798 GCCGGTTCGTTCGTCAAC 59.452 61.111 1.90 0.00 0.00 3.18
3026 4244 2.662527 GGCCGGTTCGTTCGTCAA 60.663 61.111 1.90 0.00 0.00 3.18
3027 4245 4.668118 GGGCCGGTTCGTTCGTCA 62.668 66.667 1.90 0.00 0.00 4.35
3028 4246 4.668118 TGGGCCGGTTCGTTCGTC 62.668 66.667 1.90 0.00 0.00 4.20
3080 4314 1.671901 CGTTGGCTTGGTTGGTTGGT 61.672 55.000 0.00 0.00 0.00 3.67
3105 4341 7.778382 GGTTAAGGTTAATCTCTCTCTCTCTCT 59.222 40.741 0.00 0.00 0.00 3.10
3106 4342 7.778382 AGGTTAAGGTTAATCTCTCTCTCTCTC 59.222 40.741 0.00 0.00 28.13 3.20
3107 4343 7.648770 AGGTTAAGGTTAATCTCTCTCTCTCT 58.351 38.462 0.00 0.00 28.13 3.10
3108 4344 7.891498 AGGTTAAGGTTAATCTCTCTCTCTC 57.109 40.000 0.00 0.00 28.13 3.20
3109 4345 9.771140 TTAAGGTTAAGGTTAATCTCTCTCTCT 57.229 33.333 0.00 0.00 33.14 3.10
3110 4346 9.806203 GTTAAGGTTAAGGTTAATCTCTCTCTC 57.194 37.037 0.00 0.00 33.14 3.20
3126 4362 3.713248 GGCTAGGCTAGGGTTAAGGTTAA 59.287 47.826 22.40 0.00 0.00 2.01
3127 4363 3.311990 GGCTAGGCTAGGGTTAAGGTTA 58.688 50.000 22.40 0.00 0.00 2.85
3128 4364 2.125233 GGCTAGGCTAGGGTTAAGGTT 58.875 52.381 22.40 0.00 0.00 3.50
3129 4365 1.695016 GGGCTAGGCTAGGGTTAAGGT 60.695 57.143 22.40 0.00 0.00 3.50
3130 4366 1.057471 GGGCTAGGCTAGGGTTAAGG 58.943 60.000 22.40 0.00 0.00 2.69
3131 4367 1.057471 GGGGCTAGGCTAGGGTTAAG 58.943 60.000 22.40 0.00 0.00 1.85
3132 4368 0.646055 AGGGGCTAGGCTAGGGTTAA 59.354 55.000 22.40 0.00 0.00 2.01
3133 4369 0.105142 CAGGGGCTAGGCTAGGGTTA 60.105 60.000 22.40 0.00 0.00 2.85
3134 4370 1.384643 CAGGGGCTAGGCTAGGGTT 60.385 63.158 22.40 0.00 0.00 4.11
3135 4371 2.287251 CAGGGGCTAGGCTAGGGT 59.713 66.667 22.40 0.00 0.00 4.34
3136 4372 2.527875 CCAGGGGCTAGGCTAGGG 60.528 72.222 22.40 11.04 0.00 3.53
3137 4373 1.839296 GTCCAGGGGCTAGGCTAGG 60.839 68.421 22.40 14.78 0.00 3.02
3138 4374 1.839296 GGTCCAGGGGCTAGGCTAG 60.839 68.421 17.33 17.33 0.00 3.42
3139 4375 2.285868 GGTCCAGGGGCTAGGCTA 59.714 66.667 16.80 0.00 0.00 3.93
3140 4376 4.825679 GGGTCCAGGGGCTAGGCT 62.826 72.222 16.80 0.00 0.00 4.58
3142 4378 3.739080 ATGGGGTCCAGGGGCTAGG 62.739 68.421 0.00 0.00 36.75 3.02
3147 4383 4.815973 TCCGATGGGGTCCAGGGG 62.816 72.222 0.00 4.09 36.75 4.79
3150 4386 2.590092 GGTTCCGATGGGGTCCAG 59.410 66.667 0.00 0.00 36.75 3.86
3152 4388 2.662070 TTCGGTTCCGATGGGGTCC 61.662 63.158 14.70 0.00 38.30 4.46
3283 4546 6.982141 AGAAAAACTCACCGGGTTTATTTTTC 59.018 34.615 26.36 26.36 41.51 2.29
3325 4594 1.230281 AGGGAGAGGCAAATGGGGA 60.230 57.895 0.00 0.00 0.00 4.81
3329 4598 0.035056 AACCGAGGGAGAGGCAAATG 60.035 55.000 0.00 0.00 0.00 2.32
3330 4599 0.035056 CAACCGAGGGAGAGGCAAAT 60.035 55.000 0.00 0.00 0.00 2.32
3331 4600 1.374947 CAACCGAGGGAGAGGCAAA 59.625 57.895 0.00 0.00 0.00 3.68
3332 4601 2.592993 CCAACCGAGGGAGAGGCAA 61.593 63.158 0.00 0.00 0.00 4.52
3333 4602 3.003173 CCAACCGAGGGAGAGGCA 61.003 66.667 0.00 0.00 0.00 4.75
3344 4622 0.885596 TAAACCAGGCGAACCAACCG 60.886 55.000 0.00 0.00 39.06 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.