Multiple sequence alignment - TraesCS5A01G483000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G483000 chr5A 100.000 5116 0 0 1 5116 654158406 654153291 0.000000e+00 9448.0
1 TraesCS5A01G483000 chr5A 93.449 1038 45 6 2271 3302 654167894 654166874 0.000000e+00 1519.0
2 TraesCS5A01G483000 chr5A 95.051 788 37 2 751 1537 654169448 654168662 0.000000e+00 1238.0
3 TraesCS5A01G483000 chr5A 92.507 734 51 4 1521 2251 654168611 654167879 0.000000e+00 1048.0
4 TraesCS5A01G483000 chr5A 91.432 747 54 8 3382 4123 654166857 654166116 0.000000e+00 1016.0
5 TraesCS5A01G483000 chr5A 84.556 259 16 7 473 722 654169809 654169566 8.560000e-58 235.0
6 TraesCS5A01G483000 chr5D 91.496 1811 96 21 475 2251 527157346 527155560 0.000000e+00 2438.0
7 TraesCS5A01G483000 chr5D 93.100 1058 55 3 2271 3327 527155575 527154535 0.000000e+00 1533.0
8 TraesCS5A01G483000 chr5D 88.487 1051 84 10 3353 4396 527154566 527153546 0.000000e+00 1236.0
9 TraesCS5A01G483000 chr5D 88.507 757 45 23 4395 5115 527153443 527152693 0.000000e+00 878.0
10 TraesCS5A01G483000 chr5B 91.172 1801 120 17 473 2251 663229375 663227592 0.000000e+00 2409.0
11 TraesCS5A01G483000 chr5B 93.523 1019 44 9 2271 3287 663227607 663226609 0.000000e+00 1496.0
12 TraesCS5A01G483000 chr5B 86.819 1047 84 17 3598 4623 663226329 663225316 0.000000e+00 1120.0
13 TraesCS5A01G483000 chr5B 89.009 464 18 11 4678 5110 663225316 663224855 1.250000e-150 544.0
14 TraesCS5A01G483000 chr5B 95.455 220 10 0 3382 3601 663226603 663226384 8.150000e-93 351.0
15 TraesCS5A01G483000 chr5B 86.873 259 24 7 215 472 626438043 626438292 1.080000e-71 281.0
16 TraesCS5A01G483000 chr2B 79.066 1648 272 50 627 2232 781540233 781538617 0.000000e+00 1064.0
17 TraesCS5A01G483000 chr2B 81.938 836 126 18 733 1554 781582070 781581246 0.000000e+00 684.0
18 TraesCS5A01G483000 chr2B 82.055 730 114 11 3369 4096 781579434 781578720 1.580000e-169 606.0
19 TraesCS5A01G483000 chr2B 84.519 478 59 10 2860 3330 781537326 781536857 4.670000e-125 459.0
20 TraesCS5A01G483000 chr2B 86.364 418 54 2 2873 3290 781579863 781579449 2.170000e-123 453.0
21 TraesCS5A01G483000 chr2A 77.908 1616 264 63 627 2210 775939982 775938428 0.000000e+00 920.0
22 TraesCS5A01G483000 chr2A 78.646 1433 197 56 733 2121 775978139 775976772 0.000000e+00 850.0
23 TraesCS5A01G483000 chr2A 80.028 721 110 22 3391 4096 775941547 775940846 2.130000e-138 503.0
24 TraesCS5A01G483000 chr2A 86.124 418 55 2 2873 3290 775976057 775975643 1.010000e-121 448.0
25 TraesCS5A01G483000 chr2A 86.124 418 47 7 2860 3275 775937740 775937332 1.690000e-119 440.0
26 TraesCS5A01G483000 chr2A 82.892 415 66 3 2864 3275 775942010 775941598 8.090000e-98 368.0
27 TraesCS5A01G483000 chr2A 88.519 270 16 5 216 471 102694872 102694604 3.850000e-81 313.0
28 TraesCS5A01G483000 chr2A 95.122 41 2 0 4671 4711 702074448 702074408 1.190000e-06 65.8
29 TraesCS5A01G483000 chr2D 79.106 1431 197 52 733 2121 651696650 651698020 0.000000e+00 893.0
30 TraesCS5A01G483000 chr2D 82.597 747 105 15 3369 4096 651699162 651699902 2.010000e-178 636.0
31 TraesCS5A01G483000 chr2D 81.454 798 129 14 627 1415 651720920 651721707 2.010000e-178 636.0
32 TraesCS5A01G483000 chr2D 86.779 416 47 5 2860 3275 651724017 651724424 1.680000e-124 457.0
33 TraesCS5A01G483000 chr2D 86.124 418 55 2 2873 3290 651698733 651699147 1.010000e-121 448.0
34 TraesCS5A01G483000 chr2D 77.044 697 110 32 1517 2191 651722046 651722714 6.300000e-94 355.0
35 TraesCS5A01G483000 chr2D 87.454 271 18 4 215 470 315978069 315978338 1.080000e-76 298.0
36 TraesCS5A01G483000 chr2D 84.502 271 26 6 216 471 106857090 106857359 2.360000e-63 254.0
37 TraesCS5A01G483000 chr7B 88.327 257 24 3 215 471 222731919 222732169 2.310000e-78 303.0
38 TraesCS5A01G483000 chr7B 86.692 263 23 10 218 471 640484022 640484281 1.080000e-71 281.0
39 TraesCS5A01G483000 chr7B 86.245 269 20 3 218 471 595064653 595064919 5.050000e-70 276.0
40 TraesCS5A01G483000 chr7B 85.217 115 12 5 216 330 604356573 604356464 4.190000e-21 113.0
41 TraesCS5A01G483000 chr4A 86.447 273 19 9 215 472 319834568 319834299 3.020000e-72 283.0
42 TraesCS5A01G483000 chr4A 95.122 41 2 0 4671 4711 524284503 524284543 1.190000e-06 65.8
43 TraesCS5A01G483000 chr6A 86.296 270 21 10 216 471 430502560 430502827 3.900000e-71 279.0
44 TraesCS5A01G483000 chr3D 86.029 272 20 9 215 471 441645594 441645862 5.050000e-70 276.0
45 TraesCS5A01G483000 chr3D 85.294 272 24 5 215 471 111983701 111983431 3.040000e-67 267.0
46 TraesCS5A01G483000 chr3D 85.849 106 9 5 216 320 136774711 136774811 1.950000e-19 108.0
47 TraesCS5A01G483000 chr3B 85.714 273 21 7 215 472 821059188 821058919 6.530000e-69 272.0
48 TraesCS5A01G483000 chr7A 84.672 274 27 7 215 476 306220870 306220600 5.080000e-65 259.0
49 TraesCS5A01G483000 chr1D 85.769 260 20 5 216 459 481633872 481633614 5.080000e-65 259.0
50 TraesCS5A01G483000 chr4D 84.615 78 12 0 30 107 58158518 58158441 1.530000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G483000 chr5A 654153291 654158406 5115 True 9448.000000 9448 100.000000 1 5116 1 chr5A.!!$R1 5115
1 TraesCS5A01G483000 chr5A 654166116 654169809 3693 True 1011.200000 1519 91.399000 473 4123 5 chr5A.!!$R2 3650
2 TraesCS5A01G483000 chr5D 527152693 527157346 4653 True 1521.250000 2438 90.397500 475 5115 4 chr5D.!!$R1 4640
3 TraesCS5A01G483000 chr5B 663224855 663229375 4520 True 1184.000000 2409 91.195600 473 5110 5 chr5B.!!$R1 4637
4 TraesCS5A01G483000 chr2B 781536857 781540233 3376 True 761.500000 1064 81.792500 627 3330 2 chr2B.!!$R1 2703
5 TraesCS5A01G483000 chr2B 781578720 781582070 3350 True 581.000000 684 83.452333 733 4096 3 chr2B.!!$R2 3363
6 TraesCS5A01G483000 chr2A 775975643 775978139 2496 True 649.000000 850 82.385000 733 3290 2 chr2A.!!$R4 2557
7 TraesCS5A01G483000 chr2A 775937332 775942010 4678 True 557.750000 920 81.738000 627 4096 4 chr2A.!!$R3 3469
8 TraesCS5A01G483000 chr2D 651696650 651699902 3252 False 659.000000 893 82.609000 733 4096 3 chr2D.!!$F3 3363
9 TraesCS5A01G483000 chr2D 651720920 651724424 3504 False 482.666667 636 81.759000 627 3275 3 chr2D.!!$F4 2648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.0 20.33 16.33 45.25 3.56 F
310 311 0.036010 CAACATTCTCCCTCACGCCT 60.036 55.0 0.00 0.00 0.00 5.52 F
315 316 0.245539 TTCTCCCTCACGCCTAAACG 59.754 55.0 0.00 0.00 39.50 3.60 F
365 366 0.315251 GCCAGCTGGGTTTTGAACTC 59.685 55.0 33.46 9.38 39.65 3.01 F
781 2279 1.113788 AACTGCTGCTGCCTTTTTCA 58.886 45.0 13.47 0.00 38.71 2.69 F
2578 5005 1.173913 GCTTGCCTAACCATTTCCGT 58.826 50.0 0.00 0.00 0.00 4.69 F
3484 6387 0.179043 TGCTTAACACGACCCTGCAA 60.179 50.0 0.00 0.00 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 3419 0.531311 GAAACCAACACGACCGAGGT 60.531 55.000 0.00 0.00 0.00 3.85 R
1952 3902 1.542375 AAGCAGACACCCTGGGGAT 60.542 57.895 18.88 3.85 43.13 3.85 R
2017 3967 3.307242 GGAGATTTTGTACTGCAGTAGCG 59.693 47.826 26.70 0.00 46.23 4.26 R
2344 4764 1.453155 ACCATTTCGTTAGGCTGCAG 58.547 50.000 10.11 10.11 0.00 4.41 R
2613 5041 0.889638 AAGCTGAGTCCAGTCGTCGA 60.890 55.000 0.00 0.00 42.35 4.20 R
3677 6655 0.107831 ACTCCCTGCAACGTAAAGCA 59.892 50.000 9.46 9.46 39.25 3.91 R
4883 8015 0.035439 ACTGAAGGCGGGTTGTATGG 60.035 55.000 0.00 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.593436 AACCGGCCAACGAAGTGG 60.593 61.111 0.00 0.00 45.00 4.00
18 19 3.409605 AACCGGCCAACGAAGTGGT 62.410 57.895 0.00 0.00 45.00 4.16
19 20 3.353836 CCGGCCAACGAAGTGGTG 61.354 66.667 2.24 0.00 45.00 4.17
20 21 3.353836 CGGCCAACGAAGTGGTGG 61.354 66.667 2.24 0.00 45.00 4.61
21 22 2.983592 GGCCAACGAAGTGGTGGG 60.984 66.667 0.00 0.00 45.00 4.61
22 23 3.670377 GCCAACGAAGTGGTGGGC 61.670 66.667 0.54 0.00 45.00 5.36
23 24 2.203280 CCAACGAAGTGGTGGGCA 60.203 61.111 0.00 0.00 45.00 5.36
24 25 2.260869 CCAACGAAGTGGTGGGCAG 61.261 63.158 0.00 0.00 45.00 4.85
25 26 1.227823 CAACGAAGTGGTGGGCAGA 60.228 57.895 0.00 0.00 45.00 4.26
26 27 0.817634 CAACGAAGTGGTGGGCAGAA 60.818 55.000 0.00 0.00 45.00 3.02
27 28 0.535102 AACGAAGTGGTGGGCAGAAG 60.535 55.000 0.00 0.00 45.00 2.85
28 29 1.371183 CGAAGTGGTGGGCAGAAGA 59.629 57.895 0.00 0.00 0.00 2.87
29 30 0.671781 CGAAGTGGTGGGCAGAAGAG 60.672 60.000 0.00 0.00 0.00 2.85
30 31 0.687354 GAAGTGGTGGGCAGAAGAGA 59.313 55.000 0.00 0.00 0.00 3.10
31 32 0.689623 AAGTGGTGGGCAGAAGAGAG 59.310 55.000 0.00 0.00 0.00 3.20
32 33 1.197430 AGTGGTGGGCAGAAGAGAGG 61.197 60.000 0.00 0.00 0.00 3.69
34 35 2.596851 GGTGGGCAGAAGAGAGGCA 61.597 63.158 0.00 0.00 0.00 4.75
35 36 1.376466 GTGGGCAGAAGAGAGGCAA 59.624 57.895 0.00 0.00 0.00 4.52
37 38 0.250901 TGGGCAGAAGAGAGGCAAAC 60.251 55.000 0.00 0.00 0.00 2.93
38 39 0.962855 GGGCAGAAGAGAGGCAAACC 60.963 60.000 0.00 0.00 0.00 3.27
39 40 0.962855 GGCAGAAGAGAGGCAAACCC 60.963 60.000 0.00 0.00 36.11 4.11
42 43 0.035458 AGAAGAGAGGCAAACCCACG 59.965 55.000 0.00 0.00 36.11 4.94
43 44 0.034896 GAAGAGAGGCAAACCCACGA 59.965 55.000 0.00 0.00 36.11 4.35
45 46 2.032681 AGAGGCAAACCCACGAGC 59.967 61.111 0.00 0.00 36.11 5.03
47 48 2.032681 AGGCAAACCCACGAGCTC 59.967 61.111 2.73 2.73 36.11 4.09
48 49 3.423154 GGCAAACCCACGAGCTCG 61.423 66.667 33.45 33.45 46.33 5.03
49 50 4.090057 GCAAACCCACGAGCTCGC 62.090 66.667 34.83 13.03 44.43 5.03
50 51 3.423154 CAAACCCACGAGCTCGCC 61.423 66.667 34.83 0.00 44.43 5.54
51 52 3.936203 AAACCCACGAGCTCGCCA 61.936 61.111 34.83 0.00 44.43 5.69
52 53 3.883744 AAACCCACGAGCTCGCCAG 62.884 63.158 34.83 24.33 44.43 4.85
56 57 2.049156 CACGAGCTCGCCAGTGAA 60.049 61.111 34.83 0.00 44.43 3.18
57 58 2.091112 CACGAGCTCGCCAGTGAAG 61.091 63.158 34.83 11.35 44.43 3.02
58 59 2.259818 CGAGCTCGCCAGTGAAGT 59.740 61.111 25.07 0.00 0.00 3.01
61 62 1.287730 GAGCTCGCCAGTGAAGTGTG 61.288 60.000 0.00 0.00 0.00 3.82
62 63 2.320587 GCTCGCCAGTGAAGTGTGG 61.321 63.158 0.00 0.00 36.85 4.17
63 64 1.367471 CTCGCCAGTGAAGTGTGGA 59.633 57.895 0.00 0.00 35.67 4.02
64 65 0.668706 CTCGCCAGTGAAGTGTGGAG 60.669 60.000 0.00 0.00 35.67 3.86
65 66 1.069765 CGCCAGTGAAGTGTGGAGT 59.930 57.895 0.00 0.00 35.67 3.85
66 67 1.224069 CGCCAGTGAAGTGTGGAGTG 61.224 60.000 0.00 0.00 35.67 3.51
67 68 0.106708 GCCAGTGAAGTGTGGAGTGA 59.893 55.000 0.00 0.00 35.67 3.41
71 72 3.313526 CCAGTGAAGTGTGGAGTGAAAAG 59.686 47.826 0.00 0.00 35.67 2.27
72 73 3.941483 CAGTGAAGTGTGGAGTGAAAAGT 59.059 43.478 0.00 0.00 0.00 2.66
74 75 5.010282 AGTGAAGTGTGGAGTGAAAAGTTT 58.990 37.500 0.00 0.00 0.00 2.66
76 77 3.782889 AGTGTGGAGTGAAAAGTTTGC 57.217 42.857 0.00 0.00 0.00 3.68
77 78 2.427095 AGTGTGGAGTGAAAAGTTTGCC 59.573 45.455 0.00 0.00 0.00 4.52
78 79 1.754226 TGTGGAGTGAAAAGTTTGCCC 59.246 47.619 0.00 0.00 0.00 5.36
79 80 2.031870 GTGGAGTGAAAAGTTTGCCCT 58.968 47.619 0.00 0.00 0.00 5.19
81 82 3.253432 GTGGAGTGAAAAGTTTGCCCTAG 59.747 47.826 0.00 0.00 0.00 3.02
82 83 2.229062 GGAGTGAAAAGTTTGCCCTAGC 59.771 50.000 0.00 0.00 40.48 3.42
83 84 2.229062 GAGTGAAAAGTTTGCCCTAGCC 59.771 50.000 0.00 0.00 38.69 3.93
86 87 1.532604 AAAAGTTTGCCCTAGCCGCC 61.533 55.000 0.00 0.00 38.69 6.13
87 88 2.426305 AAAGTTTGCCCTAGCCGCCT 62.426 55.000 0.00 0.00 38.69 5.52
88 89 1.559065 AAGTTTGCCCTAGCCGCCTA 61.559 55.000 0.00 0.00 38.69 3.93
89 90 1.523938 GTTTGCCCTAGCCGCCTAG 60.524 63.158 0.00 0.00 40.64 3.02
158 159 9.444600 AAATAATAGTTGAAGTATGACCGTGTT 57.555 29.630 0.00 0.00 0.00 3.32
160 161 7.739498 AATAGTTGAAGTATGACCGTGTTTT 57.261 32.000 0.00 0.00 0.00 2.43
161 162 8.836268 AATAGTTGAAGTATGACCGTGTTTTA 57.164 30.769 0.00 0.00 0.00 1.52
165 166 7.227910 AGTTGAAGTATGACCGTGTTTTATGTT 59.772 33.333 0.00 0.00 0.00 2.71
167 168 6.483974 TGAAGTATGACCGTGTTTTATGTTGT 59.516 34.615 0.00 0.00 0.00 3.32
168 169 6.476243 AGTATGACCGTGTTTTATGTTGTC 57.524 37.500 0.00 0.00 0.00 3.18
169 170 5.992829 AGTATGACCGTGTTTTATGTTGTCA 59.007 36.000 0.00 0.00 35.92 3.58
170 171 4.804608 TGACCGTGTTTTATGTTGTCAG 57.195 40.909 0.00 0.00 0.00 3.51
171 172 4.443621 TGACCGTGTTTTATGTTGTCAGA 58.556 39.130 0.00 0.00 0.00 3.27
173 174 6.224584 TGACCGTGTTTTATGTTGTCAGATA 58.775 36.000 0.00 0.00 0.00 1.98
174 175 6.876789 TGACCGTGTTTTATGTTGTCAGATAT 59.123 34.615 0.00 0.00 0.00 1.63
175 176 8.035984 TGACCGTGTTTTATGTTGTCAGATATA 58.964 33.333 0.00 0.00 0.00 0.86
176 177 8.193250 ACCGTGTTTTATGTTGTCAGATATAC 57.807 34.615 0.00 0.00 0.00 1.47
178 179 8.114290 CCGTGTTTTATGTTGTCAGATATACAC 58.886 37.037 0.00 0.00 0.00 2.90
179 180 7.839358 CGTGTTTTATGTTGTCAGATATACACG 59.161 37.037 0.00 0.00 44.80 4.49
181 182 9.594478 TGTTTTATGTTGTCAGATATACACGAT 57.406 29.630 0.00 0.00 0.00 3.73
210 211 6.764308 ATCATGTAATTCTTGACACCTTGG 57.236 37.500 0.00 0.00 33.98 3.61
211 212 4.458989 TCATGTAATTCTTGACACCTTGGC 59.541 41.667 0.00 0.00 0.00 4.52
212 213 3.153919 TGTAATTCTTGACACCTTGGCC 58.846 45.455 0.00 0.00 0.00 5.36
213 214 1.247567 AATTCTTGACACCTTGGCCG 58.752 50.000 0.00 0.00 0.00 6.13
214 215 0.609131 ATTCTTGACACCTTGGCCGG 60.609 55.000 0.00 0.00 0.00 6.13
215 216 1.990160 TTCTTGACACCTTGGCCGGT 61.990 55.000 1.90 0.00 37.93 5.28
221 222 3.894832 ACCTTGGCCGGTGTAGAA 58.105 55.556 1.90 0.00 35.52 2.10
222 223 1.677552 ACCTTGGCCGGTGTAGAAG 59.322 57.895 1.90 0.00 35.52 2.85
225 226 1.298859 CTTGGCCGGTGTAGAAGTGC 61.299 60.000 1.90 0.00 0.00 4.40
226 227 2.046009 TTGGCCGGTGTAGAAGTGCA 62.046 55.000 1.90 0.00 0.00 4.57
227 228 1.078426 GGCCGGTGTAGAAGTGCAT 60.078 57.895 1.90 0.00 0.00 3.96
228 229 1.369091 GGCCGGTGTAGAAGTGCATG 61.369 60.000 1.90 0.00 0.00 4.06
229 230 1.982073 GCCGGTGTAGAAGTGCATGC 61.982 60.000 11.82 11.82 0.00 4.06
230 231 0.391661 CCGGTGTAGAAGTGCATGCT 60.392 55.000 20.33 0.00 0.00 3.79
231 232 1.002366 CGGTGTAGAAGTGCATGCTC 58.998 55.000 20.33 15.94 0.00 4.26
232 233 1.404717 CGGTGTAGAAGTGCATGCTCT 60.405 52.381 20.33 18.23 0.00 4.09
233 234 2.159240 CGGTGTAGAAGTGCATGCTCTA 60.159 50.000 21.70 15.62 0.00 2.43
234 235 3.452474 GGTGTAGAAGTGCATGCTCTAG 58.548 50.000 21.70 0.00 0.00 2.43
235 236 2.863137 GTGTAGAAGTGCATGCTCTAGC 59.137 50.000 21.70 16.29 42.50 3.42
236 237 2.159043 TGTAGAAGTGCATGCTCTAGCC 60.159 50.000 21.70 13.81 41.18 3.93
237 238 0.907486 AGAAGTGCATGCTCTAGCCA 59.093 50.000 21.70 0.00 41.18 4.75
239 240 2.092538 AGAAGTGCATGCTCTAGCCAAT 60.093 45.455 21.70 5.92 41.18 3.16
240 241 1.676746 AGTGCATGCTCTAGCCAATG 58.323 50.000 20.22 0.00 41.18 2.82
241 242 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56
242 243 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
245 246 1.066605 CATGCTCTAGCCAATGCAACC 59.933 52.381 0.00 0.00 41.13 3.77
247 248 1.176527 GCTCTAGCCAATGCAACCAA 58.823 50.000 0.00 0.00 41.13 3.67
248 249 1.545582 GCTCTAGCCAATGCAACCAAA 59.454 47.619 0.00 0.00 41.13 3.28
250 251 3.841643 CTCTAGCCAATGCAACCAAAAG 58.158 45.455 0.00 0.00 41.13 2.27
251 252 3.495331 TCTAGCCAATGCAACCAAAAGA 58.505 40.909 0.00 0.00 41.13 2.52
252 253 2.531522 AGCCAATGCAACCAAAAGAC 57.468 45.000 0.00 0.00 41.13 3.01
253 254 1.070601 AGCCAATGCAACCAAAAGACC 59.929 47.619 0.00 0.00 41.13 3.85
254 255 1.782044 CCAATGCAACCAAAAGACCG 58.218 50.000 0.00 0.00 0.00 4.79
255 256 1.339610 CCAATGCAACCAAAAGACCGA 59.660 47.619 0.00 0.00 0.00 4.69
256 257 2.029110 CCAATGCAACCAAAAGACCGAT 60.029 45.455 0.00 0.00 0.00 4.18
257 258 3.244976 CAATGCAACCAAAAGACCGATC 58.755 45.455 0.00 0.00 0.00 3.69
258 259 2.270352 TGCAACCAAAAGACCGATCT 57.730 45.000 0.00 0.00 36.42 2.75
260 261 2.151202 GCAACCAAAAGACCGATCTGA 58.849 47.619 0.00 0.00 34.48 3.27
261 262 2.749621 GCAACCAAAAGACCGATCTGAT 59.250 45.455 0.00 0.00 34.48 2.90
262 263 3.426695 GCAACCAAAAGACCGATCTGATG 60.427 47.826 0.00 0.00 34.48 3.07
263 264 2.991250 ACCAAAAGACCGATCTGATGG 58.009 47.619 9.14 9.14 34.48 3.51
264 265 2.571653 ACCAAAAGACCGATCTGATGGA 59.428 45.455 16.17 0.00 34.48 3.41
265 266 3.009033 ACCAAAAGACCGATCTGATGGAA 59.991 43.478 16.17 0.00 34.48 3.53
266 267 3.624861 CCAAAAGACCGATCTGATGGAAG 59.375 47.826 5.34 0.00 34.48 3.46
267 268 4.507710 CAAAAGACCGATCTGATGGAAGA 58.492 43.478 11.46 0.00 34.48 2.87
268 269 4.399004 AAAGACCGATCTGATGGAAGAG 57.601 45.455 11.46 0.00 34.48 2.85
269 270 3.304911 AGACCGATCTGATGGAAGAGA 57.695 47.619 11.46 0.00 32.29 3.10
271 272 2.955660 GACCGATCTGATGGAAGAGACT 59.044 50.000 11.46 0.00 0.00 3.24
273 274 4.735369 ACCGATCTGATGGAAGAGACTAT 58.265 43.478 11.46 0.00 0.00 2.12
274 275 4.522405 ACCGATCTGATGGAAGAGACTATG 59.478 45.833 11.46 0.00 0.00 2.23
279 280 6.983906 TCTGATGGAAGAGACTATGCAATA 57.016 37.500 0.00 0.00 0.00 1.90
280 281 6.753180 TCTGATGGAAGAGACTATGCAATAC 58.247 40.000 0.00 0.00 0.00 1.89
281 282 6.324770 TCTGATGGAAGAGACTATGCAATACA 59.675 38.462 0.00 0.00 0.00 2.29
282 283 7.015974 TCTGATGGAAGAGACTATGCAATACAT 59.984 37.037 0.00 0.00 43.18 2.29
283 284 7.512130 TGATGGAAGAGACTATGCAATACATT 58.488 34.615 0.00 0.00 40.38 2.71
284 285 7.994911 TGATGGAAGAGACTATGCAATACATTT 59.005 33.333 0.00 0.00 40.38 2.32
285 286 9.494271 GATGGAAGAGACTATGCAATACATTTA 57.506 33.333 0.00 0.00 40.38 1.40
304 305 8.682936 ACATTTATATGTCAACATTCTCCCTC 57.317 34.615 0.20 0.00 41.07 4.30
305 306 8.274322 ACATTTATATGTCAACATTCTCCCTCA 58.726 33.333 0.20 0.00 41.07 3.86
306 307 8.562892 CATTTATATGTCAACATTCTCCCTCAC 58.437 37.037 0.20 0.00 37.76 3.51
307 308 2.455674 TGTCAACATTCTCCCTCACG 57.544 50.000 0.00 0.00 0.00 4.35
308 309 1.079503 GTCAACATTCTCCCTCACGC 58.920 55.000 0.00 0.00 0.00 5.34
309 310 0.036388 TCAACATTCTCCCTCACGCC 60.036 55.000 0.00 0.00 0.00 5.68
310 311 0.036010 CAACATTCTCCCTCACGCCT 60.036 55.000 0.00 0.00 0.00 5.52
313 314 1.906574 ACATTCTCCCTCACGCCTAAA 59.093 47.619 0.00 0.00 0.00 1.85
314 315 2.280628 CATTCTCCCTCACGCCTAAAC 58.719 52.381 0.00 0.00 0.00 2.01
315 316 0.245539 TTCTCCCTCACGCCTAAACG 59.754 55.000 0.00 0.00 39.50 3.60
322 323 4.667420 ACGCCTAAACGTGGACTG 57.333 55.556 0.00 0.00 46.28 3.51
324 325 0.390124 ACGCCTAAACGTGGACTGAA 59.610 50.000 0.00 0.00 46.28 3.02
325 326 1.202557 ACGCCTAAACGTGGACTGAAA 60.203 47.619 0.00 0.00 46.28 2.69
326 327 1.459592 CGCCTAAACGTGGACTGAAAG 59.540 52.381 0.00 0.00 42.29 2.62
338 339 2.724520 CTGAAAGTGGGCTGCAAGT 58.275 52.632 0.50 0.00 35.30 3.16
339 340 1.035139 CTGAAAGTGGGCTGCAAGTT 58.965 50.000 0.50 0.00 35.30 2.66
341 342 2.622942 CTGAAAGTGGGCTGCAAGTTAA 59.377 45.455 0.50 0.00 35.30 2.01
342 343 3.230134 TGAAAGTGGGCTGCAAGTTAAT 58.770 40.909 0.50 0.00 35.30 1.40
344 345 3.665745 AAGTGGGCTGCAAGTTAATTG 57.334 42.857 0.50 0.00 42.20 2.32
353 354 1.621107 CAAGTTAATTGCGCCAGCTG 58.379 50.000 6.78 6.78 45.42 4.24
354 355 0.527565 AAGTTAATTGCGCCAGCTGG 59.472 50.000 29.34 29.34 45.42 4.85
355 356 1.139520 GTTAATTGCGCCAGCTGGG 59.860 57.895 33.46 23.40 45.42 4.45
357 358 0.897863 TTAATTGCGCCAGCTGGGTT 60.898 50.000 33.46 15.55 45.42 4.11
358 359 0.897863 TAATTGCGCCAGCTGGGTTT 60.898 50.000 33.46 18.47 45.42 3.27
359 360 1.757423 AATTGCGCCAGCTGGGTTTT 61.757 50.000 33.46 14.72 45.42 2.43
361 362 3.294493 GCGCCAGCTGGGTTTTGA 61.294 61.111 33.46 0.00 41.01 2.69
362 363 2.855514 GCGCCAGCTGGGTTTTGAA 61.856 57.895 33.46 0.00 41.01 2.69
363 364 1.007387 CGCCAGCTGGGTTTTGAAC 60.007 57.895 33.46 13.42 39.65 3.18
364 365 1.455383 CGCCAGCTGGGTTTTGAACT 61.455 55.000 33.46 0.00 39.65 3.01
365 366 0.315251 GCCAGCTGGGTTTTGAACTC 59.685 55.000 33.46 9.38 39.65 3.01
366 367 1.691196 CCAGCTGGGTTTTGAACTCA 58.309 50.000 26.14 0.00 40.21 3.41
367 368 2.031120 CCAGCTGGGTTTTGAACTCAA 58.969 47.619 26.14 0.00 42.30 3.02
368 369 2.035066 CCAGCTGGGTTTTGAACTCAAG 59.965 50.000 26.14 0.00 42.30 3.02
369 370 2.951642 CAGCTGGGTTTTGAACTCAAGA 59.048 45.455 5.57 0.00 42.30 3.02
370 371 2.952310 AGCTGGGTTTTGAACTCAAGAC 59.048 45.455 4.88 4.88 42.30 3.01
388 389 4.323569 AGACCTCTTGACTCTGATACCA 57.676 45.455 0.00 0.00 0.00 3.25
389 390 4.877773 AGACCTCTTGACTCTGATACCAT 58.122 43.478 0.00 0.00 0.00 3.55
391 392 4.357325 ACCTCTTGACTCTGATACCATGT 58.643 43.478 0.00 0.00 0.00 3.21
392 393 5.519808 ACCTCTTGACTCTGATACCATGTA 58.480 41.667 0.00 0.00 0.00 2.29
393 394 5.596361 ACCTCTTGACTCTGATACCATGTAG 59.404 44.000 0.00 0.00 0.00 2.74
394 395 5.830457 CCTCTTGACTCTGATACCATGTAGA 59.170 44.000 0.00 0.00 0.00 2.59
395 396 6.322456 CCTCTTGACTCTGATACCATGTAGAA 59.678 42.308 0.00 0.00 0.00 2.10
398 399 8.053355 TCTTGACTCTGATACCATGTAGAAGTA 58.947 37.037 0.00 0.00 0.00 2.24
399 400 7.569639 TGACTCTGATACCATGTAGAAGTAC 57.430 40.000 0.00 0.00 0.00 2.73
400 401 7.116736 TGACTCTGATACCATGTAGAAGTACA 58.883 38.462 0.00 0.00 43.43 2.90
410 411 4.920640 TGTAGAAGTACATGCTCTAGCC 57.079 45.455 0.00 0.00 35.70 3.93
411 412 4.278310 TGTAGAAGTACATGCTCTAGCCA 58.722 43.478 0.00 0.00 35.70 4.75
412 413 4.709886 TGTAGAAGTACATGCTCTAGCCAA 59.290 41.667 0.00 0.00 35.70 4.52
416 417 2.171237 AGTACATGCTCTAGCCAATGCA 59.829 45.455 0.00 0.00 41.13 3.96
417 418 2.133281 ACATGCTCTAGCCAATGCAA 57.867 45.000 0.00 0.00 41.13 4.08
419 420 2.621998 ACATGCTCTAGCCAATGCAATC 59.378 45.455 0.00 0.00 41.13 2.67
420 421 2.423446 TGCTCTAGCCAATGCAATCA 57.577 45.000 0.00 0.00 41.13 2.57
421 422 2.725637 TGCTCTAGCCAATGCAATCAA 58.274 42.857 0.00 0.00 41.13 2.57
422 423 3.090790 TGCTCTAGCCAATGCAATCAAA 58.909 40.909 0.00 0.00 41.13 2.69
424 425 4.021280 TGCTCTAGCCAATGCAATCAAAAA 60.021 37.500 0.00 0.00 41.13 1.94
448 449 8.472683 AAAAACGATCTGATGAAAGAGACTAG 57.527 34.615 0.00 0.00 0.00 2.57
449 450 5.181690 ACGATCTGATGAAAGAGACTAGC 57.818 43.478 0.00 0.00 0.00 3.42
450 451 4.037446 ACGATCTGATGAAAGAGACTAGCC 59.963 45.833 0.00 0.00 0.00 3.93
452 453 5.451103 CGATCTGATGAAAGAGACTAGCCAA 60.451 44.000 0.00 0.00 0.00 4.52
453 454 5.946942 TCTGATGAAAGAGACTAGCCAAT 57.053 39.130 0.00 0.00 0.00 3.16
454 455 7.522889 CGATCTGATGAAAGAGACTAGCCAATA 60.523 40.741 0.00 0.00 0.00 1.90
455 456 6.810911 TCTGATGAAAGAGACTAGCCAATAC 58.189 40.000 0.00 0.00 0.00 1.89
456 457 6.381133 TCTGATGAAAGAGACTAGCCAATACA 59.619 38.462 0.00 0.00 0.00 2.29
458 459 7.568349 TGATGAAAGAGACTAGCCAATACATT 58.432 34.615 0.00 0.00 0.00 2.71
459 460 8.049117 TGATGAAAGAGACTAGCCAATACATTT 58.951 33.333 0.00 0.00 0.00 2.32
464 465 9.477484 AAAGAGACTAGCCAATACATTTATACG 57.523 33.333 0.00 0.00 0.00 3.06
466 467 8.298140 AGAGACTAGCCAATACATTTATACGTC 58.702 37.037 0.00 0.00 0.00 4.34
468 469 8.418662 AGACTAGCCAATACATTTATACGTCAA 58.581 33.333 0.00 0.00 0.00 3.18
469 470 8.361592 ACTAGCCAATACATTTATACGTCAAC 57.638 34.615 0.00 0.00 0.00 3.18
470 471 7.982919 ACTAGCCAATACATTTATACGTCAACA 59.017 33.333 0.00 0.00 0.00 3.33
471 472 7.246674 AGCCAATACATTTATACGTCAACAG 57.753 36.000 0.00 0.00 0.00 3.16
549 550 5.700402 ACCCTGAAATGAGTAATACAGCT 57.300 39.130 0.00 0.00 0.00 4.24
560 561 4.122776 AGTAATACAGCTAGTGCACATGC 58.877 43.478 21.04 21.24 42.74 4.06
613 626 6.041182 TGCTTCAAATCTATGCCAATATGCTT 59.959 34.615 0.00 0.00 0.00 3.91
617 630 7.784037 TCAAATCTATGCCAATATGCTTTTGT 58.216 30.769 0.00 0.00 0.00 2.83
622 635 7.053498 TCTATGCCAATATGCTTTTGTGTAGA 58.947 34.615 0.00 0.00 0.00 2.59
623 636 5.309323 TGCCAATATGCTTTTGTGTAGAC 57.691 39.130 0.00 0.00 0.00 2.59
625 638 4.342772 CCAATATGCTTTTGTGTAGACGC 58.657 43.478 0.00 0.00 0.00 5.19
707 2110 7.697352 TTGTTTCAATTATTGTGTCTTGCAG 57.303 32.000 4.77 0.00 0.00 4.41
716 2119 7.744087 TTATTGTGTCTTGCAGAGTGTAAAT 57.256 32.000 0.00 0.00 0.00 1.40
723 2126 5.175673 GTCTTGCAGAGTGTAAATTTTTGCC 59.824 40.000 0.00 0.00 0.00 4.52
737 2230 2.697431 TTTGCCGTTGTGAAGTATGC 57.303 45.000 0.00 0.00 0.00 3.14
744 2237 3.743911 CCGTTGTGAAGTATGCTGTAACA 59.256 43.478 0.00 0.00 0.00 2.41
747 2244 6.195868 CGTTGTGAAGTATGCTGTAACAAAA 58.804 36.000 7.47 0.00 29.74 2.44
749 2246 7.149144 CGTTGTGAAGTATGCTGTAACAAAATG 60.149 37.037 7.47 0.00 29.74 2.32
767 2265 7.207383 ACAAAATGGTTAGACCTAAAAACTGC 58.793 34.615 0.00 0.00 39.58 4.40
775 2273 1.251251 CCTAAAAACTGCTGCTGCCT 58.749 50.000 13.47 0.00 38.71 4.75
780 2278 2.229675 AAACTGCTGCTGCCTTTTTC 57.770 45.000 13.47 0.00 38.71 2.29
781 2279 1.113788 AACTGCTGCTGCCTTTTTCA 58.886 45.000 13.47 0.00 38.71 2.69
804 2302 1.327764 CCTTGATTAAAGCGAGCGACC 59.672 52.381 0.00 0.00 34.24 4.79
953 2452 3.134127 GTGCCCCGATGGACAAGC 61.134 66.667 0.00 0.00 35.39 4.01
993 2492 9.311916 CAACCATCTTTGAAATTCTAACAAACA 57.688 29.630 0.00 0.00 31.67 2.83
1007 2507 6.472887 TCTAACAAACAAGAGTAATGGGGAG 58.527 40.000 0.00 0.00 0.00 4.30
1014 2514 2.320781 AGAGTAATGGGGAGGACATCG 58.679 52.381 0.00 0.00 0.00 3.84
1083 2583 5.181245 GCAGATACTCACCAAAGTTGCTTTA 59.819 40.000 0.00 0.00 31.96 1.85
1141 2641 5.065914 ACAGGCATGTAATAGCTACAATGG 58.934 41.667 0.06 0.00 43.75 3.16
1477 2988 4.339247 AGGAATTGTGACTTGGAGTTGTTG 59.661 41.667 0.00 0.00 0.00 3.33
1688 3589 4.520492 GGCCTTTCTGACAGAGAATTTCAA 59.480 41.667 5.10 0.00 40.53 2.69
1982 3932 5.105146 AGGGTGTCTGCTTCTCTAAACATAG 60.105 44.000 0.00 0.00 0.00 2.23
1986 3936 6.019156 GTGTCTGCTTCTCTAAACATAGCATC 60.019 42.308 0.00 0.00 40.66 3.91
2082 4032 1.383523 GCTCTTCTGTTGGGGTATGC 58.616 55.000 0.00 0.00 0.00 3.14
2255 4388 4.675190 CAAGAATAGCTTGCATATCCCG 57.325 45.455 0.00 0.00 46.67 5.14
2256 4389 2.704572 AGAATAGCTTGCATATCCCGC 58.295 47.619 0.00 0.00 0.00 6.13
2257 4390 2.038952 AGAATAGCTTGCATATCCCGCA 59.961 45.455 0.00 0.00 37.68 5.69
2258 4391 2.566833 ATAGCTTGCATATCCCGCAA 57.433 45.000 0.00 0.00 46.67 4.85
2283 4416 7.516198 AAAAGAGAGAAAAGAATAGCTTGCA 57.484 32.000 0.00 0.00 36.80 4.08
2284 4417 7.700022 AAAGAGAGAAAAGAATAGCTTGCAT 57.300 32.000 0.00 0.00 36.80 3.96
2285 4418 8.798859 AAAGAGAGAAAAGAATAGCTTGCATA 57.201 30.769 0.00 0.00 36.80 3.14
2303 4436 6.828502 TGCATAAACGTCTGATTATGAGAC 57.171 37.500 17.73 1.70 41.07 3.36
2513 4940 8.576442 TGTATCAATAGCAAGATCATCGTAGAA 58.424 33.333 0.00 0.00 43.58 2.10
2548 4975 2.196319 ACCTAGCCGGTCCTAAACG 58.804 57.895 1.90 0.00 44.93 3.60
2575 5002 3.996363 CCAAAAGCTTGCCTAACCATTTC 59.004 43.478 0.00 0.00 0.00 2.17
2576 5003 3.961480 AAAGCTTGCCTAACCATTTCC 57.039 42.857 0.00 0.00 0.00 3.13
2577 5004 1.463674 AGCTTGCCTAACCATTTCCG 58.536 50.000 0.00 0.00 0.00 4.30
2578 5005 1.173913 GCTTGCCTAACCATTTCCGT 58.826 50.000 0.00 0.00 0.00 4.69
2808 5309 8.458573 TCAGTTGTTTAACATGAACCATTAGT 57.541 30.769 0.00 0.00 39.30 2.24
2809 5310 8.908903 TCAGTTGTTTAACATGAACCATTAGTT 58.091 29.630 0.00 0.00 39.34 2.24
2810 5311 8.967218 CAGTTGTTTAACATGAACCATTAGTTG 58.033 33.333 0.00 0.00 37.82 3.16
2813 5314 8.864069 TGTTTAACATGAACCATTAGTTGTTG 57.136 30.769 0.00 0.00 39.40 3.33
3033 5936 5.614324 CCACTTATGGTAGAATGGAGTCA 57.386 43.478 0.00 0.00 41.64 3.41
3092 5995 1.002659 TGGTATAGTGCTTTGTGCCGT 59.997 47.619 0.00 0.00 42.00 5.68
3171 6074 3.891366 ACCCTCTTTTTCATCACACAAGG 59.109 43.478 0.00 0.00 0.00 3.61
3276 6179 3.624861 CAGTGTTTCAGGTATGCATCTCC 59.375 47.826 0.19 7.65 0.00 3.71
3278 6181 2.092429 TGTTTCAGGTATGCATCTCCCC 60.092 50.000 0.19 0.00 0.00 4.81
3292 6195 3.443045 CCCCCTGTGCGCACATTC 61.443 66.667 40.50 16.48 41.01 2.67
3314 6217 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
3317 6220 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
3335 6238 4.918060 CGCGCGTGTGTGTGTGTG 62.918 66.667 24.19 0.00 0.00 3.82
3336 6239 3.860125 GCGCGTGTGTGTGTGTGT 61.860 61.111 8.43 0.00 0.00 3.72
3337 6240 2.021243 CGCGTGTGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
3341 6244 1.006086 CGTGTGTGTGTGTGTGTCAT 58.994 50.000 0.00 0.00 0.00 3.06
3377 6280 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3379 6282 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3380 6283 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3385 6288 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
3481 6384 0.602638 TGCTGCTTAACACGACCCTG 60.603 55.000 0.00 0.00 0.00 4.45
3484 6387 0.179043 TGCTTAACACGACCCTGCAA 60.179 50.000 0.00 0.00 0.00 4.08
3559 6462 5.418209 AGATTTTTCAAGATGGAAGCTGAGG 59.582 40.000 0.00 0.00 24.31 3.86
3625 6587 2.746279 TCCCCTCAACAGAAGCAAAA 57.254 45.000 0.00 0.00 0.00 2.44
3626 6588 2.586425 TCCCCTCAACAGAAGCAAAAG 58.414 47.619 0.00 0.00 0.00 2.27
3627 6589 1.000171 CCCCTCAACAGAAGCAAAAGC 60.000 52.381 0.00 0.00 0.00 3.51
3628 6590 1.682854 CCCTCAACAGAAGCAAAAGCA 59.317 47.619 0.00 0.00 0.00 3.91
3630 6592 3.572584 CCTCAACAGAAGCAAAAGCATC 58.427 45.455 0.00 0.00 0.00 3.91
3631 6593 3.231965 CTCAACAGAAGCAAAAGCATCG 58.768 45.455 0.00 0.00 0.00 3.84
3635 6597 3.076621 ACAGAAGCAAAAGCATCGATCA 58.923 40.909 0.00 0.00 0.00 2.92
3677 6655 8.372459 GTGTTTAAAATCCTAACCCCTGAAATT 58.628 33.333 0.00 0.00 0.00 1.82
3678 6656 8.371699 TGTTTAAAATCCTAACCCCTGAAATTG 58.628 33.333 0.00 0.00 0.00 2.32
3679 6657 5.420725 AAAATCCTAACCCCTGAAATTGC 57.579 39.130 0.00 0.00 0.00 3.56
3689 6668 2.986479 CCCTGAAATTGCTTTACGTTGC 59.014 45.455 0.00 0.00 0.00 4.17
3694 6673 1.904287 ATTGCTTTACGTTGCAGGGA 58.096 45.000 0.00 0.00 40.46 4.20
3716 6695 5.108385 AGTAGTTGTTTCCGCATTTTCAG 57.892 39.130 0.00 0.00 0.00 3.02
3717 6696 3.369546 AGTTGTTTCCGCATTTTCAGG 57.630 42.857 0.00 0.00 0.00 3.86
3736 6715 1.407437 GGTTACCTGCTGATCTGGGTG 60.407 57.143 9.76 0.00 38.04 4.61
3747 6726 3.937706 CTGATCTGGGTGATTGACAAGTC 59.062 47.826 0.00 0.00 35.14 3.01
3811 6790 2.724977 TCACCATCGTTCTGTCACTC 57.275 50.000 0.00 0.00 0.00 3.51
3817 6796 3.443037 CATCGTTCTGTCACTCCTCATC 58.557 50.000 0.00 0.00 0.00 2.92
3865 6848 3.479006 CATTGTCTTAACGTTTGCTCGG 58.521 45.455 5.91 0.00 34.94 4.63
3877 6860 2.987821 GTTTGCTCGGTAGACAGAAGAC 59.012 50.000 0.00 0.00 0.00 3.01
3883 6866 4.008330 CTCGGTAGACAGAAGACCTACAA 58.992 47.826 0.00 0.00 35.65 2.41
4016 7005 0.251474 TCAGCAAGCAAGGAGGCATT 60.251 50.000 0.00 0.00 35.83 3.56
4089 7078 1.847818 TCCATTAACGCGAGATTCGG 58.152 50.000 15.93 5.96 40.84 4.30
4104 7093 3.777925 CGGTCAAGCGGTGCGAAG 61.778 66.667 0.00 0.00 0.00 3.79
4123 7112 2.614259 AGGAGAAGACTGACATGTGGT 58.386 47.619 1.15 1.22 0.00 4.16
4124 7113 2.301296 AGGAGAAGACTGACATGTGGTG 59.699 50.000 1.15 0.00 0.00 4.17
4125 7114 2.072298 GAGAAGACTGACATGTGGTGC 58.928 52.381 1.15 0.00 0.00 5.01
4126 7115 0.792640 GAAGACTGACATGTGGTGCG 59.207 55.000 1.15 0.00 0.00 5.34
4127 7116 0.392706 AAGACTGACATGTGGTGCGA 59.607 50.000 1.15 0.00 0.00 5.10
4128 7117 0.392706 AGACTGACATGTGGTGCGAA 59.607 50.000 1.15 0.00 0.00 4.70
4129 7118 0.792640 GACTGACATGTGGTGCGAAG 59.207 55.000 1.15 0.00 0.00 3.79
4141 7130 1.670380 GGTGCGAAGGAGAAGACTGAC 60.670 57.143 0.00 0.00 0.00 3.51
4190 7179 5.723295 CAGCAAGCTTTATTATTTGGTGGT 58.277 37.500 0.00 0.00 42.29 4.16
4219 7208 2.031097 GCAATCCCCATTAGGCAGCTT 61.031 52.381 0.00 0.00 0.00 3.74
4227 7216 3.181440 CCCATTAGGCAGCTTTAGGATCA 60.181 47.826 0.00 0.00 0.00 2.92
4285 7277 5.094387 TGGGTTCTCTTCCTATCTTGTTCT 58.906 41.667 0.00 0.00 0.00 3.01
4324 7317 7.307870 GGCAGAGATCATGAACTTAAGCTAATG 60.308 40.741 17.91 0.00 0.00 1.90
4336 7329 0.393077 AGCTAATGCCCGCTTCGTAT 59.607 50.000 0.00 0.00 40.80 3.06
4340 7333 1.967319 AATGCCCGCTTCGTATTCAT 58.033 45.000 0.00 0.00 0.00 2.57
4383 7382 4.635223 ACCTTAAGTTTCACGGGTTAGTC 58.365 43.478 0.97 0.00 0.00 2.59
4392 7391 5.838531 TTCACGGGTTAGTCAAATTTGTT 57.161 34.783 17.47 10.00 0.00 2.83
4449 7553 5.216648 GTCGCTCTGATCCTTATCTGTAAC 58.783 45.833 0.00 0.00 33.87 2.50
4453 7557 5.740513 GCTCTGATCCTTATCTGTAACCACC 60.741 48.000 0.00 0.00 33.87 4.61
4487 7591 4.776795 TCGACTGTGAGCAACTGTAATA 57.223 40.909 2.73 0.00 40.69 0.98
4488 7592 5.324784 TCGACTGTGAGCAACTGTAATAT 57.675 39.130 2.73 0.00 40.69 1.28
4562 7666 2.031245 TGCCATCTTGCACAAGTTTACG 60.031 45.455 10.05 0.00 39.38 3.18
4702 7808 3.731652 TGGAACTGAAGTTGGCATTTG 57.268 42.857 0.00 0.00 38.56 2.32
4767 7897 5.239306 ACCATAATTTCACATATGTCGCTGG 59.761 40.000 5.07 8.59 0.00 4.85
4790 7920 8.831715 TGGATCCTTTCTTCTTTAATTTTTGC 57.168 30.769 14.23 0.00 0.00 3.68
4814 7944 9.174166 TGCCTTTACTATTCTCAATTTACTTCC 57.826 33.333 0.00 0.00 0.00 3.46
4836 7966 7.624360 TCCGAAATGAGTGTAAATTATGCTT 57.376 32.000 0.00 0.00 0.00 3.91
4872 8002 5.914635 CGCTTGCCCACATAGTATATTTTTG 59.085 40.000 0.00 0.00 0.00 2.44
4873 8003 6.459573 CGCTTGCCCACATAGTATATTTTTGT 60.460 38.462 0.00 0.00 0.00 2.83
4957 8089 8.669946 TGACGAAATATTTACTGCCATCAATA 57.330 30.769 0.00 0.00 0.00 1.90
5098 8247 0.948678 GGCAAACTAACACGGCAGAA 59.051 50.000 0.00 0.00 0.00 3.02
5115 8264 5.866633 CGGCAGAAGGAGATACTTATGATTC 59.133 44.000 3.61 0.00 41.03 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.593436 CCACTTCGTTGGCCGGTT 60.593 61.111 1.90 0.00 37.11 4.44
1 2 3.868985 ACCACTTCGTTGGCCGGT 61.869 61.111 1.90 0.00 40.77 5.28
2 3 3.353836 CACCACTTCGTTGGCCGG 61.354 66.667 0.00 0.00 40.77 6.13
3 4 3.353836 CCACCACTTCGTTGGCCG 61.354 66.667 0.00 0.00 40.77 6.13
4 5 2.983592 CCCACCACTTCGTTGGCC 60.984 66.667 0.00 0.00 40.77 5.36
5 6 3.670377 GCCCACCACTTCGTTGGC 61.670 66.667 1.09 0.00 40.77 4.52
6 7 2.203280 TGCCCACCACTTCGTTGG 60.203 61.111 0.00 0.00 43.04 3.77
8 9 0.535102 CTTCTGCCCACCACTTCGTT 60.535 55.000 0.00 0.00 0.00 3.85
9 10 1.071471 CTTCTGCCCACCACTTCGT 59.929 57.895 0.00 0.00 0.00 3.85
10 11 0.671781 CTCTTCTGCCCACCACTTCG 60.672 60.000 0.00 0.00 0.00 3.79
11 12 0.687354 TCTCTTCTGCCCACCACTTC 59.313 55.000 0.00 0.00 0.00 3.01
12 13 0.689623 CTCTCTTCTGCCCACCACTT 59.310 55.000 0.00 0.00 0.00 3.16
14 15 1.298014 CCTCTCTTCTGCCCACCAC 59.702 63.158 0.00 0.00 0.00 4.16
17 18 0.250901 TTTGCCTCTCTTCTGCCCAC 60.251 55.000 0.00 0.00 0.00 4.61
18 19 0.250901 GTTTGCCTCTCTTCTGCCCA 60.251 55.000 0.00 0.00 0.00 5.36
19 20 0.962855 GGTTTGCCTCTCTTCTGCCC 60.963 60.000 0.00 0.00 0.00 5.36
20 21 0.962855 GGGTTTGCCTCTCTTCTGCC 60.963 60.000 0.00 0.00 34.45 4.85
21 22 0.250901 TGGGTTTGCCTCTCTTCTGC 60.251 55.000 0.00 0.00 34.45 4.26
22 23 1.528129 GTGGGTTTGCCTCTCTTCTG 58.472 55.000 0.00 0.00 34.45 3.02
23 24 0.035458 CGTGGGTTTGCCTCTCTTCT 59.965 55.000 0.00 0.00 34.45 2.85
24 25 0.034896 TCGTGGGTTTGCCTCTCTTC 59.965 55.000 0.00 0.00 34.45 2.87
25 26 0.035458 CTCGTGGGTTTGCCTCTCTT 59.965 55.000 0.00 0.00 34.45 2.85
26 27 1.674057 CTCGTGGGTTTGCCTCTCT 59.326 57.895 0.00 0.00 34.45 3.10
27 28 2.035442 GCTCGTGGGTTTGCCTCTC 61.035 63.158 0.00 0.00 34.45 3.20
28 29 2.032681 GCTCGTGGGTTTGCCTCT 59.967 61.111 0.00 0.00 34.45 3.69
29 30 2.032681 AGCTCGTGGGTTTGCCTC 59.967 61.111 0.00 0.00 34.45 4.70
30 31 2.032681 GAGCTCGTGGGTTTGCCT 59.967 61.111 0.00 0.00 34.45 4.75
31 32 3.423154 CGAGCTCGTGGGTTTGCC 61.423 66.667 27.79 0.00 34.11 4.52
32 33 4.090057 GCGAGCTCGTGGGTTTGC 62.090 66.667 34.46 13.70 42.22 3.68
34 35 3.883744 CTGGCGAGCTCGTGGGTTT 62.884 63.158 34.46 0.00 42.22 3.27
35 36 4.379243 CTGGCGAGCTCGTGGGTT 62.379 66.667 34.46 0.00 42.22 4.11
38 39 3.573772 TTCACTGGCGAGCTCGTGG 62.574 63.158 34.46 25.30 42.22 4.94
39 40 2.049156 TTCACTGGCGAGCTCGTG 60.049 61.111 34.46 24.87 42.22 4.35
42 43 1.005630 ACACTTCACTGGCGAGCTC 60.006 57.895 2.73 2.73 0.00 4.09
43 44 1.301244 CACACTTCACTGGCGAGCT 60.301 57.895 0.00 0.00 0.00 4.09
45 46 0.668706 CTCCACACTTCACTGGCGAG 60.669 60.000 0.00 0.00 0.00 5.03
47 48 1.069765 ACTCCACACTTCACTGGCG 59.930 57.895 0.00 0.00 0.00 5.69
48 49 0.106708 TCACTCCACACTTCACTGGC 59.893 55.000 0.00 0.00 0.00 4.85
49 50 2.620251 TTCACTCCACACTTCACTGG 57.380 50.000 0.00 0.00 0.00 4.00
50 51 3.941483 ACTTTTCACTCCACACTTCACTG 59.059 43.478 0.00 0.00 0.00 3.66
51 52 4.222124 ACTTTTCACTCCACACTTCACT 57.778 40.909 0.00 0.00 0.00 3.41
52 53 4.965119 AACTTTTCACTCCACACTTCAC 57.035 40.909 0.00 0.00 0.00 3.18
53 54 4.380444 GCAAACTTTTCACTCCACACTTCA 60.380 41.667 0.00 0.00 0.00 3.02
54 55 4.105486 GCAAACTTTTCACTCCACACTTC 58.895 43.478 0.00 0.00 0.00 3.01
56 57 2.427095 GGCAAACTTTTCACTCCACACT 59.573 45.455 0.00 0.00 0.00 3.55
57 58 2.481276 GGGCAAACTTTTCACTCCACAC 60.481 50.000 0.00 0.00 0.00 3.82
58 59 1.754226 GGGCAAACTTTTCACTCCACA 59.246 47.619 0.00 0.00 0.00 4.17
61 62 2.229062 GCTAGGGCAAACTTTTCACTCC 59.771 50.000 0.00 0.00 38.54 3.85
62 63 2.229062 GGCTAGGGCAAACTTTTCACTC 59.771 50.000 0.00 0.00 40.87 3.51
63 64 2.239400 GGCTAGGGCAAACTTTTCACT 58.761 47.619 0.00 0.00 40.87 3.41
64 65 1.068541 CGGCTAGGGCAAACTTTTCAC 60.069 52.381 0.00 0.00 40.87 3.18
65 66 1.243902 CGGCTAGGGCAAACTTTTCA 58.756 50.000 0.00 0.00 40.87 2.69
66 67 0.109272 GCGGCTAGGGCAAACTTTTC 60.109 55.000 0.00 0.00 40.87 2.29
67 68 1.532604 GGCGGCTAGGGCAAACTTTT 61.533 55.000 0.00 0.00 40.87 2.27
71 72 1.523938 CTAGGCGGCTAGGGCAAAC 60.524 63.158 32.50 0.00 40.87 2.93
72 73 2.742116 CCTAGGCGGCTAGGGCAAA 61.742 63.158 42.94 15.36 42.02 3.68
74 75 2.965226 AATCCTAGGCGGCTAGGGCA 62.965 60.000 46.11 35.38 44.94 5.36
76 77 1.187087 CTAATCCTAGGCGGCTAGGG 58.813 60.000 46.11 33.29 44.94 3.53
77 78 1.187087 CCTAATCCTAGGCGGCTAGG 58.813 60.000 44.13 44.13 45.93 3.02
78 79 2.217510 TCCTAATCCTAGGCGGCTAG 57.782 55.000 33.00 33.00 44.13 3.42
79 80 2.921834 ATCCTAATCCTAGGCGGCTA 57.078 50.000 18.65 18.65 44.13 3.93
81 82 1.757699 CCTATCCTAATCCTAGGCGGC 59.242 57.143 2.96 0.00 44.13 6.53
82 83 3.383698 TCCTATCCTAATCCTAGGCGG 57.616 52.381 2.96 1.86 44.13 6.13
83 84 4.527038 TGTTTCCTATCCTAATCCTAGGCG 59.473 45.833 2.96 0.00 44.13 5.52
132 133 9.444600 AACACGGTCATACTTCAACTATTATTT 57.555 29.630 0.00 0.00 0.00 1.40
133 134 9.444600 AAACACGGTCATACTTCAACTATTATT 57.555 29.630 0.00 0.00 0.00 1.40
134 135 9.444600 AAAACACGGTCATACTTCAACTATTAT 57.555 29.630 0.00 0.00 0.00 1.28
135 136 8.836268 AAAACACGGTCATACTTCAACTATTA 57.164 30.769 0.00 0.00 0.00 0.98
136 137 7.739498 AAAACACGGTCATACTTCAACTATT 57.261 32.000 0.00 0.00 0.00 1.73
137 138 8.879759 CATAAAACACGGTCATACTTCAACTAT 58.120 33.333 0.00 0.00 0.00 2.12
140 141 6.894828 ACATAAAACACGGTCATACTTCAAC 58.105 36.000 0.00 0.00 0.00 3.18
144 145 6.483974 TGACAACATAAAACACGGTCATACTT 59.516 34.615 0.00 0.00 0.00 2.24
145 146 5.992829 TGACAACATAAAACACGGTCATACT 59.007 36.000 0.00 0.00 0.00 2.12
148 149 5.060506 TCTGACAACATAAAACACGGTCAT 58.939 37.500 0.00 0.00 33.82 3.06
149 150 4.443621 TCTGACAACATAAAACACGGTCA 58.556 39.130 0.00 0.00 33.30 4.02
150 151 5.607119 ATCTGACAACATAAAACACGGTC 57.393 39.130 0.00 0.00 0.00 4.79
153 154 7.839358 CGTGTATATCTGACAACATAAAACACG 59.161 37.037 18.73 18.73 45.85 4.49
154 155 8.865978 TCGTGTATATCTGACAACATAAAACAC 58.134 33.333 0.00 0.00 0.00 3.32
155 156 8.989653 TCGTGTATATCTGACAACATAAAACA 57.010 30.769 0.00 0.00 0.00 2.83
185 186 7.148086 GCCAAGGTGTCAAGAATTACATGATTA 60.148 37.037 0.00 0.00 0.00 1.75
186 187 6.350445 GCCAAGGTGTCAAGAATTACATGATT 60.350 38.462 0.00 0.00 0.00 2.57
187 188 5.126061 GCCAAGGTGTCAAGAATTACATGAT 59.874 40.000 0.00 0.00 0.00 2.45
190 191 3.763897 GGCCAAGGTGTCAAGAATTACAT 59.236 43.478 0.00 0.00 0.00 2.29
191 192 3.153919 GGCCAAGGTGTCAAGAATTACA 58.846 45.455 0.00 0.00 0.00 2.41
192 193 2.161609 CGGCCAAGGTGTCAAGAATTAC 59.838 50.000 2.24 0.00 0.00 1.89
193 194 2.432444 CGGCCAAGGTGTCAAGAATTA 58.568 47.619 2.24 0.00 0.00 1.40
194 195 1.247567 CGGCCAAGGTGTCAAGAATT 58.752 50.000 2.24 0.00 0.00 2.17
195 196 0.609131 CCGGCCAAGGTGTCAAGAAT 60.609 55.000 2.24 0.00 0.00 2.40
196 197 1.228124 CCGGCCAAGGTGTCAAGAA 60.228 57.895 2.24 0.00 0.00 2.52
198 199 2.113139 ACCGGCCAAGGTGTCAAG 59.887 61.111 0.00 0.00 44.07 3.02
205 206 0.673644 CACTTCTACACCGGCCAAGG 60.674 60.000 0.00 0.00 37.30 3.61
206 207 1.298859 GCACTTCTACACCGGCCAAG 61.299 60.000 0.00 0.00 0.00 3.61
210 211 1.982073 GCATGCACTTCTACACCGGC 61.982 60.000 14.21 0.00 0.00 6.13
211 212 0.391661 AGCATGCACTTCTACACCGG 60.392 55.000 21.98 0.00 0.00 5.28
212 213 1.002366 GAGCATGCACTTCTACACCG 58.998 55.000 21.98 0.00 0.00 4.94
213 214 2.393271 AGAGCATGCACTTCTACACC 57.607 50.000 21.98 0.00 0.00 4.16
214 215 2.863137 GCTAGAGCATGCACTTCTACAC 59.137 50.000 22.83 8.54 41.59 2.90
215 216 2.159043 GGCTAGAGCATGCACTTCTACA 60.159 50.000 22.83 3.70 44.36 2.74
216 217 2.159043 TGGCTAGAGCATGCACTTCTAC 60.159 50.000 22.83 12.67 44.36 2.59
217 218 2.110578 TGGCTAGAGCATGCACTTCTA 58.889 47.619 22.83 17.21 44.36 2.10
218 219 0.907486 TGGCTAGAGCATGCACTTCT 59.093 50.000 22.83 17.00 44.36 2.85
220 221 2.022195 CATTGGCTAGAGCATGCACTT 58.978 47.619 22.83 8.33 44.36 3.16
221 222 1.676746 CATTGGCTAGAGCATGCACT 58.323 50.000 21.45 21.45 44.36 4.40
222 223 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57
225 226 1.066605 GGTTGCATTGGCTAGAGCATG 59.933 52.381 3.54 0.90 44.36 4.06
226 227 1.341285 TGGTTGCATTGGCTAGAGCAT 60.341 47.619 3.54 0.00 44.36 3.79
227 228 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26
228 229 1.176527 TTGGTTGCATTGGCTAGAGC 58.823 50.000 0.00 0.00 41.91 4.09
229 230 3.507233 TCTTTTGGTTGCATTGGCTAGAG 59.493 43.478 0.00 0.00 41.91 2.43
230 231 3.255642 GTCTTTTGGTTGCATTGGCTAGA 59.744 43.478 0.00 0.00 41.91 2.43
231 232 3.578688 GTCTTTTGGTTGCATTGGCTAG 58.421 45.455 0.00 0.00 41.91 3.42
232 233 2.298729 GGTCTTTTGGTTGCATTGGCTA 59.701 45.455 0.00 0.00 41.91 3.93
233 234 1.070601 GGTCTTTTGGTTGCATTGGCT 59.929 47.619 0.00 0.00 41.91 4.75
234 235 1.511850 GGTCTTTTGGTTGCATTGGC 58.488 50.000 0.00 0.00 41.68 4.52
235 236 1.339610 TCGGTCTTTTGGTTGCATTGG 59.660 47.619 0.00 0.00 0.00 3.16
236 237 2.791383 TCGGTCTTTTGGTTGCATTG 57.209 45.000 0.00 0.00 0.00 2.82
237 238 3.057315 CAGATCGGTCTTTTGGTTGCATT 60.057 43.478 0.00 0.00 30.42 3.56
239 240 1.879380 CAGATCGGTCTTTTGGTTGCA 59.121 47.619 0.00 0.00 30.42 4.08
240 241 2.151202 TCAGATCGGTCTTTTGGTTGC 58.849 47.619 0.00 0.00 30.42 4.17
241 242 3.127548 CCATCAGATCGGTCTTTTGGTTG 59.872 47.826 13.38 1.42 32.74 3.77
242 243 3.009033 TCCATCAGATCGGTCTTTTGGTT 59.991 43.478 18.67 0.00 36.21 3.67
245 246 4.507710 TCTTCCATCAGATCGGTCTTTTG 58.492 43.478 0.00 0.00 30.42 2.44
247 248 4.026744 TCTCTTCCATCAGATCGGTCTTT 58.973 43.478 0.00 0.00 30.42 2.52
248 249 3.383185 GTCTCTTCCATCAGATCGGTCTT 59.617 47.826 0.00 0.00 30.42 3.01
250 251 2.955660 AGTCTCTTCCATCAGATCGGTC 59.044 50.000 0.00 0.00 0.00 4.79
251 252 3.025322 AGTCTCTTCCATCAGATCGGT 57.975 47.619 0.00 0.00 0.00 4.69
252 253 4.617995 GCATAGTCTCTTCCATCAGATCGG 60.618 50.000 0.00 0.00 0.00 4.18
253 254 4.022503 TGCATAGTCTCTTCCATCAGATCG 60.023 45.833 0.00 0.00 0.00 3.69
254 255 5.465532 TGCATAGTCTCTTCCATCAGATC 57.534 43.478 0.00 0.00 0.00 2.75
255 256 5.883685 TTGCATAGTCTCTTCCATCAGAT 57.116 39.130 0.00 0.00 0.00 2.90
256 257 5.883685 ATTGCATAGTCTCTTCCATCAGA 57.116 39.130 0.00 0.00 0.00 3.27
257 258 6.519382 TGTATTGCATAGTCTCTTCCATCAG 58.481 40.000 0.00 0.00 0.00 2.90
258 259 6.484364 TGTATTGCATAGTCTCTTCCATCA 57.516 37.500 0.00 0.00 0.00 3.07
280 281 8.562892 GTGAGGGAGAATGTTGACATATAAATG 58.437 37.037 0.00 0.00 39.17 2.32
281 282 7.442364 CGTGAGGGAGAATGTTGACATATAAAT 59.558 37.037 0.00 0.00 35.10 1.40
282 283 6.761242 CGTGAGGGAGAATGTTGACATATAAA 59.239 38.462 0.00 0.00 35.10 1.40
283 284 6.280643 CGTGAGGGAGAATGTTGACATATAA 58.719 40.000 0.00 0.00 35.10 0.98
284 285 5.739070 GCGTGAGGGAGAATGTTGACATATA 60.739 44.000 0.00 0.00 35.10 0.86
285 286 4.697514 CGTGAGGGAGAATGTTGACATAT 58.302 43.478 0.00 0.00 35.10 1.78
286 287 3.678806 GCGTGAGGGAGAATGTTGACATA 60.679 47.826 0.00 0.00 35.10 2.29
288 289 1.608025 GCGTGAGGGAGAATGTTGACA 60.608 52.381 0.00 0.00 0.00 3.58
289 290 1.079503 GCGTGAGGGAGAATGTTGAC 58.920 55.000 0.00 0.00 0.00 3.18
290 291 0.036388 GGCGTGAGGGAGAATGTTGA 60.036 55.000 0.00 0.00 0.00 3.18
291 292 0.036010 AGGCGTGAGGGAGAATGTTG 60.036 55.000 0.00 0.00 0.00 3.33
292 293 1.568504 TAGGCGTGAGGGAGAATGTT 58.431 50.000 0.00 0.00 0.00 2.71
293 294 1.568504 TTAGGCGTGAGGGAGAATGT 58.431 50.000 0.00 0.00 0.00 2.71
294 295 2.280628 GTTTAGGCGTGAGGGAGAATG 58.719 52.381 0.00 0.00 0.00 2.67
295 296 1.134788 CGTTTAGGCGTGAGGGAGAAT 60.135 52.381 0.00 0.00 0.00 2.40
299 300 3.781760 ACGTTTAGGCGTGAGGGA 58.218 55.556 0.00 0.00 43.99 4.20
305 306 0.390124 TTCAGTCCACGTTTAGGCGT 59.610 50.000 0.00 0.00 46.88 5.68
306 307 1.459592 CTTTCAGTCCACGTTTAGGCG 59.540 52.381 0.00 0.00 37.94 5.52
307 308 2.223377 CACTTTCAGTCCACGTTTAGGC 59.777 50.000 0.00 0.00 0.00 3.93
308 309 2.806244 CCACTTTCAGTCCACGTTTAGG 59.194 50.000 0.00 0.00 0.00 2.69
309 310 2.806244 CCCACTTTCAGTCCACGTTTAG 59.194 50.000 0.00 0.00 0.00 1.85
310 311 2.841215 CCCACTTTCAGTCCACGTTTA 58.159 47.619 0.00 0.00 0.00 2.01
313 314 1.227853 GCCCACTTTCAGTCCACGT 60.228 57.895 0.00 0.00 0.00 4.49
314 315 1.071471 AGCCCACTTTCAGTCCACG 59.929 57.895 0.00 0.00 0.00 4.94
315 316 1.518903 GCAGCCCACTTTCAGTCCAC 61.519 60.000 0.00 0.00 0.00 4.02
316 317 1.228245 GCAGCCCACTTTCAGTCCA 60.228 57.895 0.00 0.00 0.00 4.02
317 318 0.823356 TTGCAGCCCACTTTCAGTCC 60.823 55.000 0.00 0.00 0.00 3.85
318 319 0.595095 CTTGCAGCCCACTTTCAGTC 59.405 55.000 0.00 0.00 0.00 3.51
322 323 3.942130 ATTAACTTGCAGCCCACTTTC 57.058 42.857 0.00 0.00 0.00 2.62
324 325 3.665745 CAATTAACTTGCAGCCCACTT 57.334 42.857 0.00 0.00 0.00 3.16
334 335 1.621107 CAGCTGGCGCAATTAACTTG 58.379 50.000 10.83 0.00 39.10 3.16
335 336 0.527565 CCAGCTGGCGCAATTAACTT 59.472 50.000 22.33 0.00 39.10 2.66
336 337 1.315257 CCCAGCTGGCGCAATTAACT 61.315 55.000 28.39 0.00 39.10 2.24
337 338 1.139520 CCCAGCTGGCGCAATTAAC 59.860 57.895 28.39 0.00 39.10 2.01
338 339 0.897863 AACCCAGCTGGCGCAATTAA 60.898 50.000 28.39 0.00 39.10 1.40
339 340 0.897863 AAACCCAGCTGGCGCAATTA 60.898 50.000 28.39 0.00 39.10 1.40
341 342 2.209315 AAAACCCAGCTGGCGCAAT 61.209 52.632 28.39 8.82 39.10 3.56
342 343 2.837291 AAAACCCAGCTGGCGCAA 60.837 55.556 28.39 0.00 39.10 4.85
344 345 2.855514 TTCAAAACCCAGCTGGCGC 61.856 57.895 28.39 0.00 37.83 6.53
345 346 1.007387 GTTCAAAACCCAGCTGGCG 60.007 57.895 28.39 21.83 37.83 5.69
347 348 1.691196 TGAGTTCAAAACCCAGCTGG 58.309 50.000 26.87 26.87 41.37 4.85
348 349 2.951642 TCTTGAGTTCAAAACCCAGCTG 59.048 45.455 6.78 6.78 35.15 4.24
349 350 2.952310 GTCTTGAGTTCAAAACCCAGCT 59.048 45.455 0.00 0.00 35.15 4.24
350 351 2.034685 GGTCTTGAGTTCAAAACCCAGC 59.965 50.000 6.15 0.00 40.26 4.85
351 352 3.555966 AGGTCTTGAGTTCAAAACCCAG 58.444 45.455 12.55 0.00 45.69 4.45
352 353 3.202151 AGAGGTCTTGAGTTCAAAACCCA 59.798 43.478 12.55 0.00 45.69 4.51
353 354 3.821748 AGAGGTCTTGAGTTCAAAACCC 58.178 45.455 12.55 5.95 45.69 4.11
366 367 4.678256 TGGTATCAGAGTCAAGAGGTCTT 58.322 43.478 0.00 0.00 36.45 3.01
367 368 4.323569 TGGTATCAGAGTCAAGAGGTCT 57.676 45.455 0.00 0.00 0.00 3.85
368 369 4.404073 ACATGGTATCAGAGTCAAGAGGTC 59.596 45.833 0.00 0.00 0.00 3.85
369 370 4.357325 ACATGGTATCAGAGTCAAGAGGT 58.643 43.478 0.00 0.00 0.00 3.85
370 371 5.830457 TCTACATGGTATCAGAGTCAAGAGG 59.170 44.000 0.00 0.00 0.00 3.69
373 374 7.106439 ACTTCTACATGGTATCAGAGTCAAG 57.894 40.000 0.00 0.00 0.00 3.02
375 376 7.116736 TGTACTTCTACATGGTATCAGAGTCA 58.883 38.462 0.00 0.00 0.00 3.41
376 377 7.569639 TGTACTTCTACATGGTATCAGAGTC 57.430 40.000 0.00 0.00 0.00 3.36
388 389 4.895889 TGGCTAGAGCATGTACTTCTACAT 59.104 41.667 3.54 0.00 43.30 2.29
389 390 4.278310 TGGCTAGAGCATGTACTTCTACA 58.722 43.478 3.54 0.00 44.36 2.74
391 392 5.740224 GCATTGGCTAGAGCATGTACTTCTA 60.740 44.000 3.54 0.00 44.36 2.10
392 393 4.701765 CATTGGCTAGAGCATGTACTTCT 58.298 43.478 3.54 0.00 44.36 2.85
393 394 3.249559 GCATTGGCTAGAGCATGTACTTC 59.750 47.826 3.54 0.00 44.36 3.01
394 395 3.209410 GCATTGGCTAGAGCATGTACTT 58.791 45.455 3.54 0.00 44.36 2.24
395 396 2.171237 TGCATTGGCTAGAGCATGTACT 59.829 45.455 3.54 0.00 44.36 2.73
398 399 2.133281 TTGCATTGGCTAGAGCATGT 57.867 45.000 3.54 0.00 44.36 3.21
399 400 2.621526 TGATTGCATTGGCTAGAGCATG 59.378 45.455 3.54 0.90 44.36 4.06
400 401 2.940158 TGATTGCATTGGCTAGAGCAT 58.060 42.857 3.54 0.00 44.36 3.79
401 402 2.423446 TGATTGCATTGGCTAGAGCA 57.577 45.000 3.54 0.00 44.36 4.26
424 425 6.533367 GCTAGTCTCTTTCATCAGATCGTTTT 59.467 38.462 0.00 0.00 0.00 2.43
427 428 4.037446 GGCTAGTCTCTTTCATCAGATCGT 59.963 45.833 0.00 0.00 0.00 3.73
429 430 5.528043 TGGCTAGTCTCTTTCATCAGATC 57.472 43.478 0.00 0.00 0.00 2.75
430 431 5.946942 TTGGCTAGTCTCTTTCATCAGAT 57.053 39.130 0.00 0.00 0.00 2.90
432 433 6.577103 TGTATTGGCTAGTCTCTTTCATCAG 58.423 40.000 0.00 0.00 0.00 2.90
433 434 6.544928 TGTATTGGCTAGTCTCTTTCATCA 57.455 37.500 0.00 0.00 0.00 3.07
434 435 8.443953 AAATGTATTGGCTAGTCTCTTTCATC 57.556 34.615 0.00 0.00 0.00 2.92
438 439 9.477484 CGTATAAATGTATTGGCTAGTCTCTTT 57.523 33.333 0.00 0.00 0.00 2.52
439 440 8.639761 ACGTATAAATGTATTGGCTAGTCTCTT 58.360 33.333 0.00 0.00 0.00 2.85
440 441 8.179509 ACGTATAAATGTATTGGCTAGTCTCT 57.820 34.615 0.00 0.00 0.00 3.10
441 442 8.080417 TGACGTATAAATGTATTGGCTAGTCTC 58.920 37.037 0.00 0.00 0.00 3.36
442 443 7.948357 TGACGTATAAATGTATTGGCTAGTCT 58.052 34.615 0.00 0.00 0.00 3.24
444 445 7.982919 TGTTGACGTATAAATGTATTGGCTAGT 59.017 33.333 0.00 0.00 0.00 2.57
445 446 8.360325 TGTTGACGTATAAATGTATTGGCTAG 57.640 34.615 0.00 0.00 0.00 3.42
447 448 6.238374 GCTGTTGACGTATAAATGTATTGGCT 60.238 38.462 0.00 0.00 0.00 4.75
448 449 5.907391 GCTGTTGACGTATAAATGTATTGGC 59.093 40.000 0.00 0.00 0.00 4.52
449 450 6.427150 GGCTGTTGACGTATAAATGTATTGG 58.573 40.000 0.00 0.00 0.00 3.16
450 451 6.126741 CGGCTGTTGACGTATAAATGTATTG 58.873 40.000 0.00 0.00 40.41 1.90
452 453 4.748102 CCGGCTGTTGACGTATAAATGTAT 59.252 41.667 0.00 0.00 44.61 2.29
453 454 4.114073 CCGGCTGTTGACGTATAAATGTA 58.886 43.478 0.00 0.00 44.61 2.29
454 455 2.933906 CCGGCTGTTGACGTATAAATGT 59.066 45.455 0.00 0.00 44.61 2.71
455 456 2.286833 CCCGGCTGTTGACGTATAAATG 59.713 50.000 0.00 0.00 44.61 2.32
456 457 2.168936 TCCCGGCTGTTGACGTATAAAT 59.831 45.455 0.00 0.00 44.61 1.40
458 459 1.184431 TCCCGGCTGTTGACGTATAA 58.816 50.000 0.00 0.00 44.61 0.98
459 460 1.135527 CTTCCCGGCTGTTGACGTATA 59.864 52.381 0.00 0.00 44.61 1.47
461 462 1.290955 CTTCCCGGCTGTTGACGTA 59.709 57.895 0.00 0.00 44.61 3.57
462 463 2.030562 CTTCCCGGCTGTTGACGT 59.969 61.111 0.00 0.00 44.61 4.34
463 464 2.030562 ACTTCCCGGCTGTTGACG 59.969 61.111 0.00 0.00 45.91 4.35
464 465 0.534203 TTCACTTCCCGGCTGTTGAC 60.534 55.000 0.00 0.00 0.00 3.18
466 467 1.856265 GCTTCACTTCCCGGCTGTTG 61.856 60.000 0.00 0.00 0.00 3.33
468 469 2.032681 GCTTCACTTCCCGGCTGT 59.967 61.111 0.00 0.00 0.00 4.40
469 470 2.032528 TGCTTCACTTCCCGGCTG 59.967 61.111 0.00 0.00 0.00 4.85
470 471 2.032681 GTGCTTCACTTCCCGGCT 59.967 61.111 0.00 0.00 0.00 5.52
471 472 2.032681 AGTGCTTCACTTCCCGGC 59.967 61.111 0.00 0.00 42.59 6.13
510 511 4.349636 TCAGGGTTGTTCATCTTCCTACAA 59.650 41.667 0.00 0.00 0.00 2.41
516 517 5.474876 ACTCATTTCAGGGTTGTTCATCTTC 59.525 40.000 0.00 0.00 0.00 2.87
524 525 5.648092 GCTGTATTACTCATTTCAGGGTTGT 59.352 40.000 0.00 0.00 0.00 3.32
525 526 5.882557 AGCTGTATTACTCATTTCAGGGTTG 59.117 40.000 0.00 0.00 0.00 3.77
549 550 4.280425 TCAAATGAAAAGGCATGTGCACTA 59.720 37.500 19.41 4.84 44.36 2.74
560 561 8.550376 CCAACACTTAAACATCAAATGAAAAGG 58.450 33.333 0.00 0.00 0.00 3.11
613 626 2.421619 TGATGCATGCGTCTACACAAA 58.578 42.857 33.63 14.35 33.41 2.83
640 2043 6.535540 TCCAAGGTGCTTGTATACTTGTTAA 58.464 36.000 4.17 0.00 39.58 2.01
644 2047 5.003804 AGTTCCAAGGTGCTTGTATACTTG 58.996 41.667 4.17 0.00 39.58 3.16
688 2091 5.764686 ACACTCTGCAAGACACAATAATTGA 59.235 36.000 0.00 0.00 38.67 2.57
707 2110 5.038033 TCACAACGGCAAAAATTTACACTC 58.962 37.500 0.00 0.00 0.00 3.51
716 2119 3.067461 AGCATACTTCACAACGGCAAAAA 59.933 39.130 0.00 0.00 0.00 1.94
723 2126 4.983215 TGTTACAGCATACTTCACAACG 57.017 40.909 0.00 0.00 0.00 4.10
744 2237 7.433680 CAGCAGTTTTTAGGTCTAACCATTTT 58.566 34.615 0.00 0.00 41.95 1.82
747 2244 4.459337 GCAGCAGTTTTTAGGTCTAACCAT 59.541 41.667 0.00 0.00 41.95 3.55
749 2246 4.072839 AGCAGCAGTTTTTAGGTCTAACC 58.927 43.478 0.00 0.00 38.99 2.85
767 2265 2.867975 CAAGGTTTGAAAAAGGCAGCAG 59.132 45.455 0.00 0.00 0.00 4.24
775 2273 6.200097 GCTCGCTTTAATCAAGGTTTGAAAAA 59.800 34.615 0.00 0.50 43.95 1.94
780 2278 3.120338 TCGCTCGCTTTAATCAAGGTTTG 60.120 43.478 0.00 0.00 32.37 2.93
781 2279 3.071479 TCGCTCGCTTTAATCAAGGTTT 58.929 40.909 0.00 0.00 32.37 3.27
841 2340 9.778741 CTCATAGGTATCCACTTAAGCAAATAA 57.221 33.333 1.29 0.00 0.00 1.40
878 2377 2.420022 CCTTCGCTGTCATAAGGTTTGG 59.580 50.000 0.00 0.00 35.95 3.28
953 2452 8.946085 TCAAAGATGGTTGCTTAAATACTACTG 58.054 33.333 0.00 0.00 0.00 2.74
981 2480 7.466804 TCCCCATTACTCTTGTTTGTTAGAAT 58.533 34.615 0.00 0.00 0.00 2.40
993 2492 2.700897 CGATGTCCTCCCCATTACTCTT 59.299 50.000 0.00 0.00 0.00 2.85
1007 2507 3.438781 TGAAACAACATAAGGCGATGTCC 59.561 43.478 8.27 0.00 39.16 4.02
1014 2514 5.699839 ACGAGAAATGAAACAACATAAGGC 58.300 37.500 0.00 0.00 0.00 4.35
1083 2583 5.857268 ACGTATGTACTTGTACCTTGGTTT 58.143 37.500 8.25 0.00 0.00 3.27
1113 2613 6.749139 TGTAGCTATTACATGCCTGTAGAAG 58.251 40.000 0.00 5.49 39.00 2.85
1477 2988 9.924650 AACAATTACGGTATTAGATAGATGTCC 57.075 33.333 0.00 0.00 0.00 4.02
1608 3419 0.531311 GAAACCAACACGACCGAGGT 60.531 55.000 0.00 0.00 0.00 3.85
1838 3775 4.089408 TACCAAGGGTCAGTTGTAAACC 57.911 45.455 0.00 0.00 42.08 3.27
1839 3776 6.567132 CGAAATACCAAGGGTCAGTTGTAAAC 60.567 42.308 0.00 0.00 41.68 2.01
1946 3896 2.713167 CAGACACCCTGGGGATATGAAT 59.287 50.000 18.88 0.00 39.23 2.57
1952 3902 1.542375 AAGCAGACACCCTGGGGAT 60.542 57.895 18.88 3.85 43.13 3.85
1982 3932 3.797865 GCATAATTGAGGCCAACAGATGC 60.798 47.826 5.01 15.69 37.58 3.91
1986 3936 3.444742 TGAAGCATAATTGAGGCCAACAG 59.555 43.478 5.01 0.00 34.56 3.16
2017 3967 3.307242 GGAGATTTTGTACTGCAGTAGCG 59.693 47.826 26.70 0.00 46.23 4.26
2135 4085 7.987486 TGTTTAAAATTTAATTGTCACGAGCG 58.013 30.769 0.00 0.00 0.00 5.03
2136 4086 9.726034 CATGTTTAAAATTTAATTGTCACGAGC 57.274 29.630 0.00 0.00 0.00 5.03
2258 4391 7.945134 TGCAAGCTATTCTTTTCTCTCTTTTT 58.055 30.769 0.00 0.00 31.27 1.94
2259 4392 7.516198 TGCAAGCTATTCTTTTCTCTCTTTT 57.484 32.000 0.00 0.00 31.27 2.27
2260 4393 7.700022 ATGCAAGCTATTCTTTTCTCTCTTT 57.300 32.000 0.00 0.00 31.27 2.52
2261 4394 8.798859 TTATGCAAGCTATTCTTTTCTCTCTT 57.201 30.769 0.00 0.00 31.27 2.85
2262 4395 8.672815 GTTTATGCAAGCTATTCTTTTCTCTCT 58.327 33.333 0.00 0.00 31.27 3.10
2263 4396 7.637907 CGTTTATGCAAGCTATTCTTTTCTCTC 59.362 37.037 0.00 0.00 31.27 3.20
2264 4397 7.119846 ACGTTTATGCAAGCTATTCTTTTCTCT 59.880 33.333 0.00 0.00 31.27 3.10
2265 4398 7.244192 ACGTTTATGCAAGCTATTCTTTTCTC 58.756 34.615 0.00 0.00 31.27 2.87
2266 4399 7.119846 AGACGTTTATGCAAGCTATTCTTTTCT 59.880 33.333 0.00 0.00 31.27 2.52
2267 4400 7.217070 CAGACGTTTATGCAAGCTATTCTTTTC 59.783 37.037 0.00 0.00 31.27 2.29
2268 4401 7.023575 CAGACGTTTATGCAAGCTATTCTTTT 58.976 34.615 0.00 0.00 31.27 2.27
2269 4402 6.371548 TCAGACGTTTATGCAAGCTATTCTTT 59.628 34.615 0.00 0.00 31.27 2.52
2270 4403 5.874810 TCAGACGTTTATGCAAGCTATTCTT 59.125 36.000 0.00 0.00 34.78 2.52
2271 4404 5.419542 TCAGACGTTTATGCAAGCTATTCT 58.580 37.500 0.00 0.00 0.00 2.40
2272 4405 5.718649 TCAGACGTTTATGCAAGCTATTC 57.281 39.130 0.00 0.00 0.00 1.75
2273 4406 6.683974 AATCAGACGTTTATGCAAGCTATT 57.316 33.333 0.00 0.00 0.00 1.73
2274 4407 7.657354 TCATAATCAGACGTTTATGCAAGCTAT 59.343 33.333 11.27 0.00 35.84 2.97
2275 4408 6.983890 TCATAATCAGACGTTTATGCAAGCTA 59.016 34.615 11.27 0.00 35.84 3.32
2276 4409 5.817296 TCATAATCAGACGTTTATGCAAGCT 59.183 36.000 11.27 0.00 35.84 3.74
2277 4410 6.018751 TCTCATAATCAGACGTTTATGCAAGC 60.019 38.462 11.27 0.00 35.84 4.01
2278 4411 7.223582 AGTCTCATAATCAGACGTTTATGCAAG 59.776 37.037 11.27 6.50 44.40 4.01
2279 4412 7.041721 AGTCTCATAATCAGACGTTTATGCAA 58.958 34.615 11.27 2.07 44.40 4.08
2280 4413 6.573434 AGTCTCATAATCAGACGTTTATGCA 58.427 36.000 11.27 0.00 44.40 3.96
2281 4414 6.697455 TGAGTCTCATAATCAGACGTTTATGC 59.303 38.462 11.27 1.25 44.40 3.14
2282 4415 7.918033 ACTGAGTCTCATAATCAGACGTTTATG 59.082 37.037 2.22 10.23 44.40 1.90
2283 4416 7.918033 CACTGAGTCTCATAATCAGACGTTTAT 59.082 37.037 2.22 0.00 44.40 1.40
2284 4417 7.120726 TCACTGAGTCTCATAATCAGACGTTTA 59.879 37.037 2.22 0.00 44.40 2.01
2285 4418 6.071896 TCACTGAGTCTCATAATCAGACGTTT 60.072 38.462 2.22 0.00 44.40 3.60
2303 4436 4.752146 TCTCAACTATGCATGTCACTGAG 58.248 43.478 10.16 14.04 0.00 3.35
2344 4764 1.453155 ACCATTTCGTTAGGCTGCAG 58.547 50.000 10.11 10.11 0.00 4.41
2513 4940 2.709966 AGGTTGGGTTTGGTAGTAGGT 58.290 47.619 0.00 0.00 0.00 3.08
2548 4975 2.659016 GGCAAGCTTTTGGGCCTC 59.341 61.111 16.26 0.00 43.09 4.70
2575 5002 1.296056 CCCTACAGTTTTCCGCACGG 61.296 60.000 1.73 1.73 0.00 4.94
2576 5003 1.296056 CCCCTACAGTTTTCCGCACG 61.296 60.000 0.00 0.00 0.00 5.34
2577 5004 1.583495 GCCCCTACAGTTTTCCGCAC 61.583 60.000 0.00 0.00 0.00 5.34
2578 5005 1.302993 GCCCCTACAGTTTTCCGCA 60.303 57.895 0.00 0.00 0.00 5.69
2613 5041 0.889638 AAGCTGAGTCCAGTCGTCGA 60.890 55.000 0.00 0.00 42.35 4.20
2738 5238 3.065925 GCAATTGATTAGCACTCCCACTC 59.934 47.826 10.34 0.00 0.00 3.51
2821 5670 7.010738 AGCAATCTCAAAAACAATCAACAACAG 59.989 33.333 0.00 0.00 0.00 3.16
2822 5671 6.817641 AGCAATCTCAAAAACAATCAACAACA 59.182 30.769 0.00 0.00 0.00 3.33
3033 5936 6.721208 TCCCATGAAAGCTCTTTAGTTTCAAT 59.279 34.615 0.00 0.00 42.03 2.57
3092 5995 0.668096 CGCTAGTACGGCAACACCAA 60.668 55.000 12.77 0.00 39.03 3.67
3171 6074 3.133691 TGAGGCATGAATATCAACTCGC 58.866 45.455 0.00 0.00 32.21 5.03
3276 6179 2.672651 TGAATGTGCGCACAGGGG 60.673 61.111 41.77 0.00 45.48 4.79
3278 6181 2.872557 CCTGAATGTGCGCACAGG 59.127 61.111 41.77 33.67 45.48 4.00
3289 6192 2.016318 CACACACACACACACCTGAAT 58.984 47.619 0.00 0.00 0.00 2.57
3292 6195 0.447406 CACACACACACACACACCTG 59.553 55.000 0.00 0.00 0.00 4.00
3318 6221 4.918060 CACACACACACACGCGCG 62.918 66.667 30.96 30.96 0.00 6.86
3319 6222 3.860125 ACACACACACACACGCGC 61.860 61.111 5.73 0.00 0.00 6.86
3320 6223 2.021243 CACACACACACACACGCG 59.979 61.111 3.53 3.53 0.00 6.01
3321 6224 1.060308 GACACACACACACACACGC 59.940 57.895 0.00 0.00 0.00 5.34
3322 6225 1.006086 ATGACACACACACACACACG 58.994 50.000 0.00 0.00 0.00 4.49
3323 6226 1.737236 ACATGACACACACACACACAC 59.263 47.619 0.00 0.00 0.00 3.82
3324 6227 1.736681 CACATGACACACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
3325 6228 1.737236 ACACATGACACACACACACAC 59.263 47.619 0.00 0.00 0.00 3.82
3326 6229 1.736681 CACACATGACACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
3327 6230 1.737236 ACACACATGACACACACACAC 59.263 47.619 0.00 0.00 0.00 3.82
3328 6231 1.736681 CACACACATGACACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
3329 6232 1.737236 ACACACACATGACACACACAC 59.263 47.619 0.00 0.00 0.00 3.82
3330 6233 1.736681 CACACACACATGACACACACA 59.263 47.619 0.00 0.00 0.00 3.72
3331 6234 1.737236 ACACACACACATGACACACAC 59.263 47.619 0.00 0.00 0.00 3.82
3332 6235 1.736681 CACACACACACATGACACACA 59.263 47.619 0.00 0.00 0.00 3.72
3333 6236 1.737236 ACACACACACACATGACACAC 59.263 47.619 0.00 0.00 0.00 3.82
3334 6237 1.736681 CACACACACACACATGACACA 59.263 47.619 0.00 0.00 0.00 3.72
3335 6238 1.737236 ACACACACACACACATGACAC 59.263 47.619 0.00 0.00 0.00 3.67
3336 6239 1.736681 CACACACACACACACATGACA 59.263 47.619 0.00 0.00 0.00 3.58
3337 6240 1.737236 ACACACACACACACACATGAC 59.263 47.619 0.00 0.00 0.00 3.06
3341 6244 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3379 6282 9.787532 GCATGAATAAATTAGCTTCTAAACACA 57.212 29.630 0.00 0.00 0.00 3.72
3457 6360 1.128692 GTCGTGTTAAGCAGCATGGAC 59.871 52.381 0.00 0.00 35.86 4.02
3533 6436 5.122869 TCAGCTTCCATCTTGAAAAATCTCG 59.877 40.000 0.00 0.00 0.00 4.04
3559 6462 1.927895 CGACAAGACCTACATCCAGC 58.072 55.000 0.00 0.00 0.00 4.85
3631 6593 4.747108 ACACGATCTTCCGATCAATTGATC 59.253 41.667 30.57 30.57 45.11 2.92
3635 6597 6.978343 TTAAACACGATCTTCCGATCAATT 57.022 33.333 0.00 0.00 45.11 2.32
3643 6605 7.414873 GGGTTAGGATTTTAAACACGATCTTCC 60.415 40.741 0.00 0.00 0.00 3.46
3649 6611 5.005094 CAGGGGTTAGGATTTTAAACACGA 58.995 41.667 0.00 0.00 28.87 4.35
3650 6612 5.005094 TCAGGGGTTAGGATTTTAAACACG 58.995 41.667 0.00 0.00 28.87 4.49
3653 6615 7.333423 GCAATTTCAGGGGTTAGGATTTTAAAC 59.667 37.037 0.00 0.00 0.00 2.01
3677 6655 0.107831 ACTCCCTGCAACGTAAAGCA 59.892 50.000 9.46 9.46 39.25 3.91
3678 6656 2.000447 CTACTCCCTGCAACGTAAAGC 59.000 52.381 0.00 0.00 0.00 3.51
3679 6657 3.314541 ACTACTCCCTGCAACGTAAAG 57.685 47.619 0.00 0.00 0.00 1.85
3689 6668 1.270625 TGCGGAAACAACTACTCCCTG 60.271 52.381 0.00 0.00 0.00 4.45
3694 6673 4.023193 CCTGAAAATGCGGAAACAACTACT 60.023 41.667 0.00 0.00 0.00 2.57
3716 6695 0.912486 ACCCAGATCAGCAGGTAACC 59.088 55.000 0.00 0.00 37.17 2.85
3717 6696 1.555075 TCACCCAGATCAGCAGGTAAC 59.445 52.381 0.00 0.00 0.00 2.50
3736 6715 2.106683 CGGGCCGGACTTGTCAATC 61.107 63.158 20.56 0.00 0.00 2.67
3811 6790 0.820226 TGACTGCTTCTCCGATGAGG 59.180 55.000 0.00 0.00 39.23 3.86
3817 6796 0.671781 CAAGGGTGACTGCTTCTCCG 60.672 60.000 0.00 0.00 38.60 4.63
3865 6848 7.964604 AAATTGTTGTAGGTCTTCTGTCTAC 57.035 36.000 0.00 0.00 35.29 2.59
4016 7005 0.677288 AGCTTGCTGCATTTGCTTCA 59.323 45.000 15.94 0.00 45.94 3.02
4089 7078 2.357034 TCCTTCGCACCGCTTGAC 60.357 61.111 0.00 0.00 0.00 3.18
4104 7093 2.693069 CACCACATGTCAGTCTTCTCC 58.307 52.381 0.00 0.00 0.00 3.71
4123 7112 1.328279 TGTCAGTCTTCTCCTTCGCA 58.672 50.000 0.00 0.00 0.00 5.10
4124 7113 2.266554 CATGTCAGTCTTCTCCTTCGC 58.733 52.381 0.00 0.00 0.00 4.70
4125 7114 3.249091 CACATGTCAGTCTTCTCCTTCG 58.751 50.000 0.00 0.00 0.00 3.79
4126 7115 3.594134 CCACATGTCAGTCTTCTCCTTC 58.406 50.000 0.00 0.00 0.00 3.46
4127 7116 2.289945 GCCACATGTCAGTCTTCTCCTT 60.290 50.000 0.00 0.00 0.00 3.36
4128 7117 1.277557 GCCACATGTCAGTCTTCTCCT 59.722 52.381 0.00 0.00 0.00 3.69
4129 7118 1.002430 TGCCACATGTCAGTCTTCTCC 59.998 52.381 0.00 0.00 0.00 3.71
4141 7130 3.054878 GAGTTTCAAAGCTTGCCACATG 58.945 45.455 0.00 0.00 0.00 3.21
4178 7167 3.055891 GCTTGAGGCAACCACCAAATAAT 60.056 43.478 0.00 0.00 41.35 1.28
4201 7190 2.854736 AAAGCTGCCTAATGGGGATT 57.145 45.000 0.00 0.00 34.07 3.01
4219 7208 6.127054 ACAATCTCCGAGTCAAATGATCCTAA 60.127 38.462 0.00 0.00 0.00 2.69
4227 7216 2.356125 CCCCACAATCTCCGAGTCAAAT 60.356 50.000 0.00 0.00 0.00 2.32
4285 7277 5.079643 TGATCTCTGCCTATGTATGCACTA 58.920 41.667 0.00 0.00 33.17 2.74
4324 7317 2.475487 GAGTTATGAATACGAAGCGGGC 59.525 50.000 0.00 0.00 0.00 6.13
4358 7351 3.690475 ACCCGTGAAACTTAAGGTAGG 57.310 47.619 7.53 2.63 31.75 3.18
4362 7355 4.634199 TGACTAACCCGTGAAACTTAAGG 58.366 43.478 7.53 0.00 31.75 2.69
4449 7553 0.452987 CGAAGCATGGATTGTGGTGG 59.547 55.000 0.00 0.00 0.00 4.61
4453 7557 2.079158 ACAGTCGAAGCATGGATTGTG 58.921 47.619 1.52 0.00 33.93 3.33
4513 7617 8.682936 AAGTCAGAATCTAAAACAACATCTGT 57.317 30.769 0.00 0.00 41.27 3.41
4514 7618 9.604626 GAAAGTCAGAATCTAAAACAACATCTG 57.395 33.333 0.00 0.00 35.35 2.90
4515 7619 9.566432 AGAAAGTCAGAATCTAAAACAACATCT 57.434 29.630 0.00 0.00 0.00 2.90
4516 7620 9.604626 CAGAAAGTCAGAATCTAAAACAACATC 57.395 33.333 0.00 0.00 0.00 3.06
4517 7621 8.078596 GCAGAAAGTCAGAATCTAAAACAACAT 58.921 33.333 0.00 0.00 0.00 2.71
4518 7622 7.417612 GCAGAAAGTCAGAATCTAAAACAACA 58.582 34.615 0.00 0.00 0.00 3.33
4519 7623 6.858478 GGCAGAAAGTCAGAATCTAAAACAAC 59.142 38.462 0.00 0.00 0.00 3.32
4520 7624 6.545666 TGGCAGAAAGTCAGAATCTAAAACAA 59.454 34.615 0.00 0.00 0.00 2.83
4525 7629 6.305272 AGATGGCAGAAAGTCAGAATCTAA 57.695 37.500 0.00 0.00 33.74 2.10
4597 7701 5.201243 CAAGGGTATTAGGAAAGGAAAGGG 58.799 45.833 0.00 0.00 0.00 3.95
4603 7707 7.407729 TCCTTAAACAAGGGTATTAGGAAAGG 58.592 38.462 3.68 0.00 40.38 3.11
4638 7742 7.830697 ACAGTCAATCAATGTCAATTATGAGGA 59.169 33.333 0.00 0.00 35.88 3.71
4641 7745 9.012161 TCAACAGTCAATCAATGTCAATTATGA 57.988 29.630 0.00 0.00 0.00 2.15
4650 7755 6.294473 ACTCTTCTCAACAGTCAATCAATGT 58.706 36.000 0.00 0.00 0.00 2.71
4767 7897 9.494271 AAGGCAAAAATTAAAGAAGAAAGGATC 57.506 29.630 0.00 0.00 0.00 3.36
4790 7920 9.595823 TCGGAAGTAAATTGAGAATAGTAAAGG 57.404 33.333 0.00 0.00 0.00 3.11
4814 7944 7.511965 CGCAAAGCATAATTTACACTCATTTCG 60.512 37.037 0.00 0.00 0.00 3.46
4872 8002 5.220912 GGCGGGTTGTATGGTAAGATAAAAC 60.221 44.000 0.00 0.00 0.00 2.43
4873 8003 4.883006 GGCGGGTTGTATGGTAAGATAAAA 59.117 41.667 0.00 0.00 0.00 1.52
4877 8007 2.124411 AGGCGGGTTGTATGGTAAGAT 58.876 47.619 0.00 0.00 0.00 2.40
4883 8015 0.035439 ACTGAAGGCGGGTTGTATGG 60.035 55.000 0.00 0.00 0.00 2.74
4935 8067 7.023575 GGCTATTGATGGCAGTAAATATTTCG 58.976 38.462 3.39 0.00 35.81 3.46
4957 8089 3.450457 TGTTTTGGTGTTTCATTGAGGCT 59.550 39.130 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.