Multiple sequence alignment - TraesCS5A01G482900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G482900 chr5A 100.000 3776 0 0 1 3776 654148796 654152571 0.000000e+00 6974.0
1 TraesCS5A01G482900 chr5D 94.619 2769 110 18 1013 3776 527149263 527151997 0.000000e+00 4252.0
2 TraesCS5A01G482900 chr5D 83.427 356 41 4 682 1019 150739399 150739754 7.870000e-82 315.0
3 TraesCS5A01G482900 chr5D 80.702 285 30 14 756 1019 406425508 406425788 8.270000e-47 198.0
4 TraesCS5A01G482900 chr5D 76.791 349 59 8 691 1019 547889158 547888812 3.880000e-40 176.0
5 TraesCS5A01G482900 chr5B 94.100 2288 92 14 1031 3290 663222007 663224279 0.000000e+00 3437.0
6 TraesCS5A01G482900 chr5B 81.399 586 100 7 61 643 232652991 232653570 1.590000e-128 470.0
7 TraesCS5A01G482900 chr5B 85.969 392 48 6 134 521 441388163 441388551 2.710000e-111 412.0
8 TraesCS5A01G482900 chr3D 90.557 879 80 2 1408 2285 169729026 169729902 0.000000e+00 1160.0
9 TraesCS5A01G482900 chr3D 82.714 619 100 6 27 642 161691487 161692101 9.220000e-151 544.0
10 TraesCS5A01G482900 chr3D 95.570 158 7 0 1332 1489 169728875 169729032 1.740000e-63 254.0
11 TraesCS5A01G482900 chr3A 84.028 983 115 17 1274 2249 667663928 667664875 0.000000e+00 907.0
12 TraesCS5A01G482900 chr3A 90.562 498 42 3 3281 3776 667699058 667699552 0.000000e+00 654.0
13 TraesCS5A01G482900 chr3A 94.720 322 17 0 2245 2566 667698724 667699045 5.630000e-138 501.0
14 TraesCS5A01G482900 chr3A 82.175 561 93 5 83 641 190251494 190252049 3.410000e-130 475.0
15 TraesCS5A01G482900 chr3A 82.609 483 78 4 27 507 190604001 190604479 4.510000e-114 422.0
16 TraesCS5A01G482900 chr6B 82.716 648 90 16 1 642 199083201 199083832 1.180000e-154 556.0
17 TraesCS5A01G482900 chr6B 82.766 470 71 7 128 593 47262467 47262004 9.760000e-111 411.0
18 TraesCS5A01G482900 chr6B 84.507 355 35 10 683 1019 422646446 422646798 2.170000e-87 333.0
19 TraesCS5A01G482900 chr6B 73.371 353 67 19 688 1018 32795967 32796314 5.160000e-19 106.0
20 TraesCS5A01G482900 chrUn 92.281 285 22 0 1774 2058 131922557 131922273 4.540000e-109 405.0
21 TraesCS5A01G482900 chrUn 90.213 235 18 3 2051 2285 131921720 131921491 6.130000e-78 302.0
22 TraesCS5A01G482900 chrUn 89.451 237 25 0 1408 1644 131923975 131923739 2.200000e-77 300.0
23 TraesCS5A01G482900 chrUn 92.157 102 8 0 1390 1491 131924068 131923967 1.090000e-30 145.0
24 TraesCS5A01G482900 chr6A 78.778 622 113 17 83 691 36695716 36695101 2.110000e-107 399.0
25 TraesCS5A01G482900 chr4A 81.212 495 84 8 2 492 679152644 679153133 1.270000e-104 390.0
26 TraesCS5A01G482900 chr7B 82.437 279 31 6 737 997 107987502 107987780 1.060000e-55 228.0
27 TraesCS5A01G482900 chr1B 77.994 309 49 8 728 1017 317992357 317992665 3.880000e-40 176.0
28 TraesCS5A01G482900 chr4D 75.224 335 59 10 711 1024 467434737 467434406 1.830000e-28 137.0
29 TraesCS5A01G482900 chr2D 81.197 117 20 2 1 116 343773922 343774037 4.020000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G482900 chr5A 654148796 654152571 3775 False 6974.0 6974 100.0000 1 3776 1 chr5A.!!$F1 3775
1 TraesCS5A01G482900 chr5D 527149263 527151997 2734 False 4252.0 4252 94.6190 1013 3776 1 chr5D.!!$F3 2763
2 TraesCS5A01G482900 chr5B 663222007 663224279 2272 False 3437.0 3437 94.1000 1031 3290 1 chr5B.!!$F3 2259
3 TraesCS5A01G482900 chr5B 232652991 232653570 579 False 470.0 470 81.3990 61 643 1 chr5B.!!$F1 582
4 TraesCS5A01G482900 chr3D 169728875 169729902 1027 False 707.0 1160 93.0635 1332 2285 2 chr3D.!!$F2 953
5 TraesCS5A01G482900 chr3D 161691487 161692101 614 False 544.0 544 82.7140 27 642 1 chr3D.!!$F1 615
6 TraesCS5A01G482900 chr3A 667663928 667664875 947 False 907.0 907 84.0280 1274 2249 1 chr3A.!!$F3 975
7 TraesCS5A01G482900 chr3A 667698724 667699552 828 False 577.5 654 92.6410 2245 3776 2 chr3A.!!$F4 1531
8 TraesCS5A01G482900 chr3A 190251494 190252049 555 False 475.0 475 82.1750 83 641 1 chr3A.!!$F1 558
9 TraesCS5A01G482900 chr6B 199083201 199083832 631 False 556.0 556 82.7160 1 642 1 chr6B.!!$F2 641
10 TraesCS5A01G482900 chrUn 131921491 131924068 2577 True 288.0 405 91.0255 1390 2285 4 chrUn.!!$R1 895
11 TraesCS5A01G482900 chr6A 36695101 36695716 615 True 399.0 399 78.7780 83 691 1 chr6A.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
532 544 0.035152 TGAGCATGAAATGGCCGAGT 60.035 50.0 0.0 0.0 46.86 4.18 F
895 907 0.179045 AGGTTGCTGACGAACTTGCT 60.179 50.0 0.0 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 3223 1.152943 TAGTGCTCGATCCTCGGCT 60.153 57.895 9.99 2.26 40.88 5.52 R
2804 4539 0.317854 GGGCACTCTCAACAAAACGC 60.318 55.000 0.00 0.00 0.00 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 1.537202 GAAGCCACGACTTTCAAGCAT 59.463 47.619 0.00 0.00 0.00 3.79
57 59 1.813859 GTGGGATCACGACGATGGA 59.186 57.895 0.00 0.00 33.17 3.41
58 60 0.174845 GTGGGATCACGACGATGGAA 59.825 55.000 0.00 0.00 33.17 3.53
69 71 1.204941 GACGATGGAAGGTGTACTGCT 59.795 52.381 0.00 0.00 0.00 4.24
74 76 1.202758 TGGAAGGTGTACTGCTTGTGG 60.203 52.381 0.00 0.00 0.00 4.17
75 77 1.202770 GGAAGGTGTACTGCTTGTGGT 60.203 52.381 0.00 0.00 0.00 4.16
88 90 2.092914 GCTTGTGGTAAGTCATAGGGCT 60.093 50.000 0.00 0.00 0.00 5.19
100 102 0.919710 ATAGGGCTGTTCTTCCACCC 59.080 55.000 0.00 0.00 41.17 4.61
101 103 0.474854 TAGGGCTGTTCTTCCACCCA 60.475 55.000 0.00 0.00 43.47 4.51
102 104 1.142688 AGGGCTGTTCTTCCACCCAT 61.143 55.000 0.00 0.00 43.47 4.00
116 118 2.608506 CCACCCATAATGCATGCAATCG 60.609 50.000 26.68 13.21 32.84 3.34
118 120 3.057104 CACCCATAATGCATGCAATCGAT 60.057 43.478 26.68 12.43 32.84 3.59
119 121 3.057104 ACCCATAATGCATGCAATCGATG 60.057 43.478 26.68 22.13 32.84 3.84
132 134 3.470709 CAATCGATGCTCCCAAGTATGT 58.529 45.455 0.00 0.00 0.00 2.29
158 160 5.371526 GACCATCCTCTTGCTTCATTCATA 58.628 41.667 0.00 0.00 0.00 2.15
159 161 5.759059 ACCATCCTCTTGCTTCATTCATAA 58.241 37.500 0.00 0.00 0.00 1.90
208 213 0.250381 GGAGCTCGGAGATACTCGGA 60.250 60.000 9.69 0.00 39.57 4.55
245 252 2.236489 ACCTTGGCAAATACCTGCAT 57.764 45.000 0.00 0.00 44.52 3.96
299 306 6.887002 TGAAGATACTCATCAGTGTAGTCAGT 59.113 38.462 0.00 0.00 33.62 3.41
307 314 3.154710 TCAGTGTAGTCAGTCGGAATGT 58.845 45.455 5.27 0.00 0.00 2.71
320 327 5.575995 CAGTCGGAATGTCATATGCTATCAG 59.424 44.000 0.00 0.00 0.00 2.90
348 356 6.474427 TCATTGTCGTCGATATCTTTTGGTAC 59.526 38.462 0.00 0.00 0.00 3.34
356 364 7.097128 CGTCGATATCTTTTGGTACGAACTAAG 60.097 40.741 0.34 0.00 0.00 2.18
358 366 6.474427 CGATATCTTTTGGTACGAACTAAGCA 59.526 38.462 0.34 0.00 0.00 3.91
362 370 4.799419 TTTGGTACGAACTAAGCACAAC 57.201 40.909 0.00 0.00 0.00 3.32
371 379 1.134037 ACTAAGCACAACCAAACCGGA 60.134 47.619 9.46 0.00 38.63 5.14
372 380 2.159382 CTAAGCACAACCAAACCGGAT 58.841 47.619 9.46 0.00 38.63 4.18
381 389 1.185315 CCAAACCGGATGCATTCCTT 58.815 50.000 9.46 0.00 42.99 3.36
382 390 1.135024 CCAAACCGGATGCATTCCTTG 60.135 52.381 9.46 1.40 42.99 3.61
452 461 9.230122 TGTGAACAAAAAGAGATCTATGCATTA 57.770 29.630 3.54 0.00 0.00 1.90
461 470 7.163001 AGAGATCTATGCATTAGATAACGCA 57.837 36.000 3.54 0.00 45.76 5.24
477 486 3.895232 ACGCATATGAAAGAGGTGAGT 57.105 42.857 6.97 0.00 0.00 3.41
485 494 7.255766 GCATATGAAAGAGGTGAGTCAGATAGA 60.256 40.741 6.97 0.00 0.00 1.98
521 533 6.317140 GGTGAAGTAATCTTTCATGAGCATGA 59.683 38.462 8.99 8.99 45.30 3.07
532 544 0.035152 TGAGCATGAAATGGCCGAGT 60.035 50.000 0.00 0.00 46.86 4.18
536 548 0.813184 CATGAAATGGCCGAGTGCTT 59.187 50.000 0.00 0.00 41.79 3.91
538 550 0.250684 TGAAATGGCCGAGTGCTTGA 60.251 50.000 0.00 0.00 40.92 3.02
587 599 2.341760 GTCGATCCTCAACGTTTTCTCG 59.658 50.000 0.00 3.70 0.00 4.04
595 607 1.597663 CAACGTTTTCTCGTCTTGCCT 59.402 47.619 0.00 0.00 43.38 4.75
601 613 2.125350 CTCGTCTTGCCTGCCTCC 60.125 66.667 0.00 0.00 0.00 4.30
607 619 0.405198 TCTTGCCTGCCTCCAATTCA 59.595 50.000 0.00 0.00 0.00 2.57
609 621 1.407979 CTTGCCTGCCTCCAATTCATC 59.592 52.381 0.00 0.00 0.00 2.92
612 624 1.816961 GCCTGCCTCCAATTCATCGAT 60.817 52.381 0.00 0.00 0.00 3.59
646 658 1.375908 GAGGTGCTCGACATTGCCA 60.376 57.895 0.00 0.00 0.00 4.92
647 659 0.955428 GAGGTGCTCGACATTGCCAA 60.955 55.000 0.00 0.00 0.00 4.52
648 660 0.322816 AGGTGCTCGACATTGCCAAT 60.323 50.000 0.00 0.00 0.00 3.16
649 661 0.527565 GGTGCTCGACATTGCCAATT 59.472 50.000 0.00 0.00 0.00 2.32
650 662 1.067635 GGTGCTCGACATTGCCAATTT 60.068 47.619 0.00 0.00 0.00 1.82
651 663 2.610232 GGTGCTCGACATTGCCAATTTT 60.610 45.455 0.00 0.00 0.00 1.82
652 664 3.059166 GTGCTCGACATTGCCAATTTTT 58.941 40.909 0.00 0.00 0.00 1.94
673 685 6.828502 TTTTTCTCTATGTCGGAATCATCG 57.171 37.500 0.00 0.00 0.00 3.84
674 686 4.505313 TTCTCTATGTCGGAATCATCGG 57.495 45.455 0.00 0.00 0.00 4.18
675 687 3.751518 TCTCTATGTCGGAATCATCGGA 58.248 45.455 0.00 0.00 33.03 4.55
679 691 3.571741 GTCGGAATCATCGGACTCC 57.428 57.895 8.69 0.00 46.66 3.85
690 702 4.403976 GGACTCCGAAGCGATGAC 57.596 61.111 0.00 0.00 0.00 3.06
691 703 1.810532 GGACTCCGAAGCGATGACT 59.189 57.895 0.00 0.00 0.00 3.41
692 704 0.248702 GGACTCCGAAGCGATGACTC 60.249 60.000 0.00 0.00 0.00 3.36
693 705 0.736053 GACTCCGAAGCGATGACTCT 59.264 55.000 0.00 0.00 0.00 3.24
694 706 1.133407 GACTCCGAAGCGATGACTCTT 59.867 52.381 0.00 0.00 0.00 2.85
695 707 2.355132 GACTCCGAAGCGATGACTCTTA 59.645 50.000 0.00 0.00 0.00 2.10
696 708 2.356382 ACTCCGAAGCGATGACTCTTAG 59.644 50.000 0.00 0.00 0.00 2.18
697 709 1.676529 TCCGAAGCGATGACTCTTAGG 59.323 52.381 0.00 0.00 35.80 2.69
698 710 1.405821 CCGAAGCGATGACTCTTAGGT 59.594 52.381 0.00 0.00 31.97 3.08
699 711 2.159226 CCGAAGCGATGACTCTTAGGTT 60.159 50.000 0.00 0.00 31.97 3.50
700 712 3.512680 CGAAGCGATGACTCTTAGGTTT 58.487 45.455 0.00 0.00 0.00 3.27
701 713 3.304559 CGAAGCGATGACTCTTAGGTTTG 59.695 47.826 0.00 0.00 0.00 2.93
702 714 3.252974 AGCGATGACTCTTAGGTTTGG 57.747 47.619 0.00 0.00 0.00 3.28
703 715 2.567615 AGCGATGACTCTTAGGTTTGGT 59.432 45.455 0.00 0.00 0.00 3.67
704 716 3.008049 AGCGATGACTCTTAGGTTTGGTT 59.992 43.478 0.00 0.00 0.00 3.67
705 717 3.751698 GCGATGACTCTTAGGTTTGGTTT 59.248 43.478 0.00 0.00 0.00 3.27
706 718 4.933400 GCGATGACTCTTAGGTTTGGTTTA 59.067 41.667 0.00 0.00 0.00 2.01
707 719 5.063564 GCGATGACTCTTAGGTTTGGTTTAG 59.936 44.000 0.00 0.00 0.00 1.85
708 720 6.164176 CGATGACTCTTAGGTTTGGTTTAGT 58.836 40.000 0.00 0.00 0.00 2.24
709 721 6.649557 CGATGACTCTTAGGTTTGGTTTAGTT 59.350 38.462 0.00 0.00 0.00 2.24
710 722 7.148623 CGATGACTCTTAGGTTTGGTTTAGTTC 60.149 40.741 0.00 0.00 0.00 3.01
711 723 7.133133 TGACTCTTAGGTTTGGTTTAGTTCT 57.867 36.000 0.00 0.00 0.00 3.01
712 724 7.571025 TGACTCTTAGGTTTGGTTTAGTTCTT 58.429 34.615 0.00 0.00 0.00 2.52
713 725 7.497909 TGACTCTTAGGTTTGGTTTAGTTCTTG 59.502 37.037 0.00 0.00 0.00 3.02
714 726 6.262496 ACTCTTAGGTTTGGTTTAGTTCTTGC 59.738 38.462 0.00 0.00 0.00 4.01
715 727 6.123651 TCTTAGGTTTGGTTTAGTTCTTGCA 58.876 36.000 0.00 0.00 0.00 4.08
716 728 4.649088 AGGTTTGGTTTAGTTCTTGCAC 57.351 40.909 0.00 0.00 0.00 4.57
717 729 4.020543 AGGTTTGGTTTAGTTCTTGCACA 58.979 39.130 0.00 0.00 0.00 4.57
718 730 4.464597 AGGTTTGGTTTAGTTCTTGCACAA 59.535 37.500 0.00 0.00 0.00 3.33
719 731 5.046950 AGGTTTGGTTTAGTTCTTGCACAAA 60.047 36.000 0.00 0.00 0.00 2.83
720 732 5.639931 GGTTTGGTTTAGTTCTTGCACAAAA 59.360 36.000 0.00 0.00 0.00 2.44
721 733 6.183360 GGTTTGGTTTAGTTCTTGCACAAAAG 60.183 38.462 0.00 0.00 0.00 2.27
722 734 5.004922 TGGTTTAGTTCTTGCACAAAAGG 57.995 39.130 0.00 0.00 0.00 3.11
723 735 3.802139 GGTTTAGTTCTTGCACAAAAGGC 59.198 43.478 0.00 0.00 0.00 4.35
724 736 4.429108 GTTTAGTTCTTGCACAAAAGGCA 58.571 39.130 0.00 0.00 40.00 4.75
725 737 2.877043 AGTTCTTGCACAAAAGGCAG 57.123 45.000 0.00 0.00 43.05 4.85
726 738 2.378038 AGTTCTTGCACAAAAGGCAGA 58.622 42.857 0.00 0.00 43.05 4.26
727 739 2.760092 AGTTCTTGCACAAAAGGCAGAA 59.240 40.909 0.00 0.00 43.05 3.02
728 740 3.385755 AGTTCTTGCACAAAAGGCAGAAT 59.614 39.130 0.00 0.00 43.05 2.40
729 741 3.374220 TCTTGCACAAAAGGCAGAATG 57.626 42.857 0.00 0.00 43.05 2.67
748 760 7.938743 CAGAATGCAACCGTCTTTTTATTAAC 58.061 34.615 0.00 0.00 0.00 2.01
749 761 7.807907 CAGAATGCAACCGTCTTTTTATTAACT 59.192 33.333 0.00 0.00 0.00 2.24
750 762 9.005777 AGAATGCAACCGTCTTTTTATTAACTA 57.994 29.630 0.00 0.00 0.00 2.24
751 763 9.783256 GAATGCAACCGTCTTTTTATTAACTAT 57.217 29.630 0.00 0.00 0.00 2.12
752 764 9.567848 AATGCAACCGTCTTTTTATTAACTATG 57.432 29.630 0.00 0.00 0.00 2.23
753 765 8.325421 TGCAACCGTCTTTTTATTAACTATGA 57.675 30.769 0.00 0.00 0.00 2.15
754 766 8.952278 TGCAACCGTCTTTTTATTAACTATGAT 58.048 29.630 0.00 0.00 0.00 2.45
784 796 7.432869 TGGAAGTTATTGACACAAAATGAAGG 58.567 34.615 0.00 0.00 0.00 3.46
785 797 7.286546 TGGAAGTTATTGACACAAAATGAAGGA 59.713 33.333 0.00 0.00 0.00 3.36
786 798 7.595130 GGAAGTTATTGACACAAAATGAAGGAC 59.405 37.037 0.00 0.00 0.00 3.85
787 799 7.581213 AGTTATTGACACAAAATGAAGGACA 57.419 32.000 0.00 0.00 0.00 4.02
788 800 8.006298 AGTTATTGACACAAAATGAAGGACAA 57.994 30.769 0.00 0.00 0.00 3.18
789 801 8.641541 AGTTATTGACACAAAATGAAGGACAAT 58.358 29.630 0.00 0.00 0.00 2.71
790 802 8.915654 GTTATTGACACAAAATGAAGGACAATC 58.084 33.333 0.00 0.00 0.00 2.67
791 803 6.713762 TTGACACAAAATGAAGGACAATCT 57.286 33.333 0.00 0.00 0.00 2.40
792 804 6.075762 TGACACAAAATGAAGGACAATCTG 57.924 37.500 0.00 0.00 0.00 2.90
793 805 4.874970 ACACAAAATGAAGGACAATCTGC 58.125 39.130 0.00 0.00 0.00 4.26
794 806 4.341806 ACACAAAATGAAGGACAATCTGCA 59.658 37.500 0.00 0.00 0.00 4.41
795 807 5.163426 ACACAAAATGAAGGACAATCTGCAA 60.163 36.000 0.00 0.00 0.00 4.08
796 808 5.404366 CACAAAATGAAGGACAATCTGCAAG 59.596 40.000 0.00 0.00 0.00 4.01
806 818 4.047834 TCTGCAAGAGTTGTGGCG 57.952 55.556 0.00 0.00 38.67 5.69
807 819 1.597854 TCTGCAAGAGTTGTGGCGG 60.598 57.895 0.00 0.00 38.67 6.13
808 820 3.259425 CTGCAAGAGTTGTGGCGGC 62.259 63.158 0.00 0.00 34.07 6.53
809 821 3.286751 GCAAGAGTTGTGGCGGCA 61.287 61.111 7.97 7.97 0.00 5.69
810 822 2.949106 CAAGAGTTGTGGCGGCAG 59.051 61.111 13.91 0.00 0.00 4.85
811 823 1.893808 CAAGAGTTGTGGCGGCAGT 60.894 57.895 13.91 0.00 0.00 4.40
812 824 1.598130 AAGAGTTGTGGCGGCAGTC 60.598 57.895 13.91 7.20 0.00 3.51
813 825 2.031163 GAGTTGTGGCGGCAGTCT 59.969 61.111 13.91 11.16 0.00 3.24
814 826 1.598130 GAGTTGTGGCGGCAGTCTT 60.598 57.895 13.91 0.00 0.00 3.01
815 827 1.569479 GAGTTGTGGCGGCAGTCTTC 61.569 60.000 13.91 4.74 0.00 2.87
816 828 2.664851 TTGTGGCGGCAGTCTTCG 60.665 61.111 13.91 0.00 0.00 3.79
817 829 3.158537 TTGTGGCGGCAGTCTTCGA 62.159 57.895 13.91 0.00 0.00 3.71
818 830 2.125512 GTGGCGGCAGTCTTCGAT 60.126 61.111 13.91 0.00 0.00 3.59
819 831 2.125552 TGGCGGCAGTCTTCGATG 60.126 61.111 7.97 0.00 0.00 3.84
820 832 2.184322 GGCGGCAGTCTTCGATGA 59.816 61.111 3.07 0.00 0.00 2.92
821 833 1.227380 GGCGGCAGTCTTCGATGAT 60.227 57.895 3.07 0.00 0.00 2.45
822 834 0.811616 GGCGGCAGTCTTCGATGATT 60.812 55.000 3.07 0.00 0.00 2.57
823 835 1.538204 GGCGGCAGTCTTCGATGATTA 60.538 52.381 3.07 0.00 0.00 1.75
824 836 1.523095 GCGGCAGTCTTCGATGATTAC 59.477 52.381 4.12 0.00 0.00 1.89
825 837 2.799917 GCGGCAGTCTTCGATGATTACT 60.800 50.000 4.12 0.00 0.00 2.24
826 838 3.550233 GCGGCAGTCTTCGATGATTACTA 60.550 47.826 4.12 0.00 0.00 1.82
827 839 4.799678 CGGCAGTCTTCGATGATTACTAT 58.200 43.478 4.12 0.00 0.00 2.12
828 840 5.223382 CGGCAGTCTTCGATGATTACTATT 58.777 41.667 4.12 0.00 0.00 1.73
829 841 5.692204 CGGCAGTCTTCGATGATTACTATTT 59.308 40.000 4.12 0.00 0.00 1.40
830 842 6.129062 CGGCAGTCTTCGATGATTACTATTTC 60.129 42.308 4.12 0.00 0.00 2.17
831 843 6.701841 GGCAGTCTTCGATGATTACTATTTCA 59.298 38.462 4.12 0.00 0.00 2.69
832 844 7.386299 GGCAGTCTTCGATGATTACTATTTCAT 59.614 37.037 4.12 0.00 35.33 2.57
833 845 8.219769 GCAGTCTTCGATGATTACTATTTCATG 58.780 37.037 4.12 0.00 32.84 3.07
834 846 8.706936 CAGTCTTCGATGATTACTATTTCATGG 58.293 37.037 4.12 0.00 32.84 3.66
835 847 7.386299 AGTCTTCGATGATTACTATTTCATGGC 59.614 37.037 4.12 0.00 32.84 4.40
836 848 7.171508 GTCTTCGATGATTACTATTTCATGGCA 59.828 37.037 4.12 0.00 32.84 4.92
837 849 7.879677 TCTTCGATGATTACTATTTCATGGCAT 59.120 33.333 0.00 0.00 32.84 4.40
838 850 7.368480 TCGATGATTACTATTTCATGGCATG 57.632 36.000 21.42 21.42 32.84 4.06
839 851 6.936335 TCGATGATTACTATTTCATGGCATGT 59.064 34.615 25.62 10.59 32.84 3.21
840 852 7.019418 CGATGATTACTATTTCATGGCATGTG 58.981 38.462 25.62 14.20 32.84 3.21
841 853 7.095102 CGATGATTACTATTTCATGGCATGTGA 60.095 37.037 25.62 16.02 32.84 3.58
842 854 8.645814 ATGATTACTATTTCATGGCATGTGAT 57.354 30.769 25.62 20.92 31.51 3.06
843 855 8.467963 TGATTACTATTTCATGGCATGTGATT 57.532 30.769 25.62 14.32 0.00 2.57
844 856 8.916062 TGATTACTATTTCATGGCATGTGATTT 58.084 29.630 25.62 13.34 0.00 2.17
845 857 9.754382 GATTACTATTTCATGGCATGTGATTTT 57.246 29.630 25.62 11.02 0.00 1.82
847 859 9.585099 TTACTATTTCATGGCATGTGATTTTTC 57.415 29.630 25.62 0.00 0.00 2.29
848 860 7.844009 ACTATTTCATGGCATGTGATTTTTCT 58.156 30.769 25.62 5.79 0.00 2.52
849 861 8.316214 ACTATTTCATGGCATGTGATTTTTCTT 58.684 29.630 25.62 3.44 0.00 2.52
850 862 7.989416 ATTTCATGGCATGTGATTTTTCTTT 57.011 28.000 25.62 0.00 0.00 2.52
851 863 6.788684 TTCATGGCATGTGATTTTTCTTTG 57.211 33.333 25.62 0.00 0.00 2.77
852 864 6.099159 TCATGGCATGTGATTTTTCTTTGA 57.901 33.333 25.62 0.31 0.00 2.69
853 865 5.927689 TCATGGCATGTGATTTTTCTTTGAC 59.072 36.000 25.62 0.00 0.00 3.18
854 866 5.534207 TGGCATGTGATTTTTCTTTGACT 57.466 34.783 0.00 0.00 0.00 3.41
855 867 6.647334 TGGCATGTGATTTTTCTTTGACTA 57.353 33.333 0.00 0.00 0.00 2.59
856 868 6.680810 TGGCATGTGATTTTTCTTTGACTAG 58.319 36.000 0.00 0.00 0.00 2.57
857 869 6.489700 TGGCATGTGATTTTTCTTTGACTAGA 59.510 34.615 0.00 0.00 0.00 2.43
858 870 7.177216 TGGCATGTGATTTTTCTTTGACTAGAT 59.823 33.333 0.00 0.00 0.00 1.98
859 871 8.031277 GGCATGTGATTTTTCTTTGACTAGATT 58.969 33.333 0.00 0.00 0.00 2.40
860 872 9.070149 GCATGTGATTTTTCTTTGACTAGATTC 57.930 33.333 0.00 0.00 0.00 2.52
861 873 9.270576 CATGTGATTTTTCTTTGACTAGATTCG 57.729 33.333 0.00 0.00 0.00 3.34
862 874 8.601845 TGTGATTTTTCTTTGACTAGATTCGA 57.398 30.769 0.00 0.00 0.00 3.71
863 875 9.051679 TGTGATTTTTCTTTGACTAGATTCGAA 57.948 29.630 0.00 0.00 0.00 3.71
864 876 9.319223 GTGATTTTTCTTTGACTAGATTCGAAC 57.681 33.333 0.00 0.00 0.00 3.95
865 877 9.051679 TGATTTTTCTTTGACTAGATTCGAACA 57.948 29.630 0.00 0.00 0.00 3.18
868 880 9.663904 TTTTTCTTTGACTAGATTCGAACATTG 57.336 29.630 0.00 0.00 0.00 2.82
869 881 6.968131 TCTTTGACTAGATTCGAACATTGG 57.032 37.500 0.00 0.00 0.00 3.16
870 882 5.351465 TCTTTGACTAGATTCGAACATTGGC 59.649 40.000 0.00 0.00 0.00 4.52
871 883 4.471904 TGACTAGATTCGAACATTGGCT 57.528 40.909 0.00 0.00 0.00 4.75
872 884 4.433615 TGACTAGATTCGAACATTGGCTC 58.566 43.478 0.00 0.00 0.00 4.70
873 885 4.081697 TGACTAGATTCGAACATTGGCTCA 60.082 41.667 0.00 0.00 0.00 4.26
874 886 5.028549 ACTAGATTCGAACATTGGCTCAT 57.971 39.130 0.00 0.00 0.00 2.90
875 887 6.161855 ACTAGATTCGAACATTGGCTCATA 57.838 37.500 0.00 0.00 0.00 2.15
876 888 6.582636 ACTAGATTCGAACATTGGCTCATAA 58.417 36.000 0.00 0.00 0.00 1.90
877 889 5.998454 AGATTCGAACATTGGCTCATAAG 57.002 39.130 0.00 0.00 0.00 1.73
878 890 4.818546 AGATTCGAACATTGGCTCATAAGG 59.181 41.667 0.00 0.00 0.00 2.69
879 891 3.627395 TCGAACATTGGCTCATAAGGT 57.373 42.857 0.00 0.00 0.00 3.50
880 892 3.950397 TCGAACATTGGCTCATAAGGTT 58.050 40.909 0.00 0.00 35.09 3.50
881 893 3.689161 TCGAACATTGGCTCATAAGGTTG 59.311 43.478 0.00 0.00 32.88 3.77
882 894 3.731867 CGAACATTGGCTCATAAGGTTGC 60.732 47.826 0.00 0.00 32.88 4.17
883 895 3.091633 ACATTGGCTCATAAGGTTGCT 57.908 42.857 0.00 0.00 0.00 3.91
884 896 2.756760 ACATTGGCTCATAAGGTTGCTG 59.243 45.455 0.00 0.00 0.00 4.41
885 897 2.877097 TTGGCTCATAAGGTTGCTGA 57.123 45.000 0.00 0.00 0.00 4.26
886 898 2.113860 TGGCTCATAAGGTTGCTGAC 57.886 50.000 0.00 0.00 0.00 3.51
887 899 1.009829 GGCTCATAAGGTTGCTGACG 58.990 55.000 0.00 0.00 0.00 4.35
888 900 1.405526 GGCTCATAAGGTTGCTGACGA 60.406 52.381 0.00 0.00 0.00 4.20
889 901 2.346803 GCTCATAAGGTTGCTGACGAA 58.653 47.619 0.00 0.00 0.00 3.85
890 902 2.094417 GCTCATAAGGTTGCTGACGAAC 59.906 50.000 0.00 0.00 0.00 3.95
891 903 3.589988 CTCATAAGGTTGCTGACGAACT 58.410 45.455 0.00 0.00 0.00 3.01
892 904 3.997021 CTCATAAGGTTGCTGACGAACTT 59.003 43.478 0.00 0.00 40.51 2.66
893 905 3.745975 TCATAAGGTTGCTGACGAACTTG 59.254 43.478 0.00 0.00 37.78 3.16
894 906 0.663153 AAGGTTGCTGACGAACTTGC 59.337 50.000 0.00 0.00 35.77 4.01
895 907 0.179045 AGGTTGCTGACGAACTTGCT 60.179 50.000 0.00 0.00 0.00 3.91
896 908 1.070134 AGGTTGCTGACGAACTTGCTA 59.930 47.619 0.00 0.00 0.00 3.49
897 909 1.461127 GGTTGCTGACGAACTTGCTAG 59.539 52.381 0.00 0.00 0.00 3.42
898 910 1.461127 GTTGCTGACGAACTTGCTAGG 59.539 52.381 0.00 0.00 0.00 3.02
899 911 0.670546 TGCTGACGAACTTGCTAGGC 60.671 55.000 0.00 0.00 0.00 3.93
900 912 0.390472 GCTGACGAACTTGCTAGGCT 60.390 55.000 0.00 0.00 0.00 4.58
901 913 1.135083 GCTGACGAACTTGCTAGGCTA 60.135 52.381 0.00 0.00 0.00 3.93
902 914 2.803451 CTGACGAACTTGCTAGGCTAG 58.197 52.381 17.33 17.33 37.42 3.42
914 926 4.202578 GCTAGGCTAGCGAAATTTTCTG 57.797 45.455 28.98 0.00 42.62 3.02
915 927 3.623510 GCTAGGCTAGCGAAATTTTCTGT 59.376 43.478 28.98 0.00 42.62 3.41
916 928 4.809426 GCTAGGCTAGCGAAATTTTCTGTA 59.191 41.667 28.98 0.00 42.62 2.74
917 929 5.293569 GCTAGGCTAGCGAAATTTTCTGTAA 59.706 40.000 28.98 0.00 42.62 2.41
918 930 5.547181 AGGCTAGCGAAATTTTCTGTAAC 57.453 39.130 9.00 0.00 0.00 2.50
919 931 5.246307 AGGCTAGCGAAATTTTCTGTAACT 58.754 37.500 9.00 0.00 0.00 2.24
920 932 6.403878 AGGCTAGCGAAATTTTCTGTAACTA 58.596 36.000 9.00 1.69 0.00 2.24
921 933 6.535508 AGGCTAGCGAAATTTTCTGTAACTAG 59.464 38.462 9.00 10.04 0.00 2.57
922 934 6.534079 GGCTAGCGAAATTTTCTGTAACTAGA 59.466 38.462 9.00 0.00 0.00 2.43
923 935 7.254151 GGCTAGCGAAATTTTCTGTAACTAGAG 60.254 40.741 9.00 0.00 0.00 2.43
924 936 7.488471 GCTAGCGAAATTTTCTGTAACTAGAGA 59.512 37.037 0.00 0.00 0.00 3.10
925 937 9.522804 CTAGCGAAATTTTCTGTAACTAGAGAT 57.477 33.333 7.50 0.00 0.00 2.75
926 938 8.779354 AGCGAAATTTTCTGTAACTAGAGATT 57.221 30.769 7.50 0.00 0.00 2.40
927 939 8.660373 AGCGAAATTTTCTGTAACTAGAGATTG 58.340 33.333 7.50 0.00 0.00 2.67
928 940 7.905493 GCGAAATTTTCTGTAACTAGAGATTGG 59.095 37.037 7.50 0.00 0.00 3.16
929 941 8.936864 CGAAATTTTCTGTAACTAGAGATTGGT 58.063 33.333 7.50 0.00 0.00 3.67
933 945 9.793259 ATTTTCTGTAACTAGAGATTGGTTTGA 57.207 29.630 0.00 0.00 32.25 2.69
934 946 9.621629 TTTTCTGTAACTAGAGATTGGTTTGAA 57.378 29.630 0.00 0.00 32.25 2.69
935 947 8.833231 TTCTGTAACTAGAGATTGGTTTGAAG 57.167 34.615 0.00 0.00 32.25 3.02
936 948 8.190326 TCTGTAACTAGAGATTGGTTTGAAGA 57.810 34.615 0.00 0.00 32.25 2.87
937 949 8.307483 TCTGTAACTAGAGATTGGTTTGAAGAG 58.693 37.037 0.00 0.00 32.25 2.85
938 950 6.874134 TGTAACTAGAGATTGGTTTGAAGAGC 59.126 38.462 0.00 0.00 32.25 4.09
939 951 4.837972 ACTAGAGATTGGTTTGAAGAGCC 58.162 43.478 0.00 0.00 0.00 4.70
940 952 4.534103 ACTAGAGATTGGTTTGAAGAGCCT 59.466 41.667 0.00 0.00 0.00 4.58
941 953 5.721960 ACTAGAGATTGGTTTGAAGAGCCTA 59.278 40.000 0.00 0.00 0.00 3.93
942 954 4.837972 AGAGATTGGTTTGAAGAGCCTAC 58.162 43.478 0.00 0.00 0.00 3.18
943 955 4.287067 AGAGATTGGTTTGAAGAGCCTACA 59.713 41.667 0.00 0.00 0.00 2.74
944 956 4.583871 AGATTGGTTTGAAGAGCCTACAG 58.416 43.478 0.00 0.00 0.00 2.74
945 957 4.287067 AGATTGGTTTGAAGAGCCTACAGA 59.713 41.667 0.00 0.00 0.00 3.41
946 958 4.431416 TTGGTTTGAAGAGCCTACAGAA 57.569 40.909 0.00 0.00 0.00 3.02
947 959 4.640771 TGGTTTGAAGAGCCTACAGAAT 57.359 40.909 0.00 0.00 0.00 2.40
948 960 5.755409 TGGTTTGAAGAGCCTACAGAATA 57.245 39.130 0.00 0.00 0.00 1.75
949 961 6.313519 TGGTTTGAAGAGCCTACAGAATAT 57.686 37.500 0.00 0.00 0.00 1.28
950 962 6.721318 TGGTTTGAAGAGCCTACAGAATATT 58.279 36.000 0.00 0.00 0.00 1.28
951 963 6.599244 TGGTTTGAAGAGCCTACAGAATATTG 59.401 38.462 0.00 0.00 0.00 1.90
952 964 6.599638 GGTTTGAAGAGCCTACAGAATATTGT 59.400 38.462 0.00 0.00 35.09 2.71
953 965 7.769044 GGTTTGAAGAGCCTACAGAATATTGTA 59.231 37.037 0.00 0.00 32.56 2.41
954 966 8.604890 GTTTGAAGAGCCTACAGAATATTGTAC 58.395 37.037 0.00 0.00 32.56 2.90
955 967 6.817184 TGAAGAGCCTACAGAATATTGTACC 58.183 40.000 0.00 0.00 32.56 3.34
956 968 6.611642 TGAAGAGCCTACAGAATATTGTACCT 59.388 38.462 0.00 0.00 32.56 3.08
957 969 6.658188 AGAGCCTACAGAATATTGTACCTC 57.342 41.667 0.00 0.00 32.43 3.85
958 970 6.377912 AGAGCCTACAGAATATTGTACCTCT 58.622 40.000 0.00 0.86 35.02 3.69
959 971 6.841755 AGAGCCTACAGAATATTGTACCTCTT 59.158 38.462 0.00 0.00 35.63 2.85
960 972 7.014808 AGAGCCTACAGAATATTGTACCTCTTC 59.985 40.741 0.00 0.00 35.63 2.87
961 973 6.841755 AGCCTACAGAATATTGTACCTCTTCT 59.158 38.462 0.00 0.00 32.56 2.85
962 974 7.345914 AGCCTACAGAATATTGTACCTCTTCTT 59.654 37.037 0.00 0.00 32.56 2.52
963 975 8.639761 GCCTACAGAATATTGTACCTCTTCTTA 58.360 37.037 0.00 0.00 32.56 2.10
964 976 9.968870 CCTACAGAATATTGTACCTCTTCTTAC 57.031 37.037 0.00 0.00 32.56 2.34
972 984 7.735326 ATTGTACCTCTTCTTACATAGGTGT 57.265 36.000 3.16 0.00 42.31 4.16
973 985 8.834004 ATTGTACCTCTTCTTACATAGGTGTA 57.166 34.615 3.16 0.00 42.31 2.90
974 986 8.654485 TTGTACCTCTTCTTACATAGGTGTAA 57.346 34.615 3.16 1.60 45.89 2.41
975 987 8.834004 TGTACCTCTTCTTACATAGGTGTAAT 57.166 34.615 3.16 0.00 46.58 1.89
976 988 8.910944 TGTACCTCTTCTTACATAGGTGTAATC 58.089 37.037 3.16 0.00 46.58 1.75
977 989 7.973048 ACCTCTTCTTACATAGGTGTAATCA 57.027 36.000 1.91 0.00 46.58 2.57
978 990 8.554490 ACCTCTTCTTACATAGGTGTAATCAT 57.446 34.615 1.91 0.00 46.58 2.45
979 991 8.993424 ACCTCTTCTTACATAGGTGTAATCATT 58.007 33.333 1.91 0.00 46.58 2.57
1036 1048 1.734388 AAAAGAAAACCCGCGCTGCT 61.734 50.000 5.56 0.00 0.00 4.24
1080 1093 1.141657 CACCATATCCACCTCACCTGG 59.858 57.143 0.00 0.00 0.00 4.45
1202 1215 0.473501 AGCCCCTCATCCTCATCCTC 60.474 60.000 0.00 0.00 0.00 3.71
1203 1216 1.487850 GCCCCTCATCCTCATCCTCC 61.488 65.000 0.00 0.00 0.00 4.30
1204 1217 0.193069 CCCCTCATCCTCATCCTCCT 59.807 60.000 0.00 0.00 0.00 3.69
1461 1496 1.076632 CCTCCTCCACCTCTACGCT 60.077 63.158 0.00 0.00 0.00 5.07
1776 2950 1.081376 CAACTCGCTCGTCGACCTT 60.081 57.895 10.58 0.00 43.16 3.50
1965 3139 2.716828 CGCAATCACGTTCGTCGCT 61.717 57.895 0.00 0.00 44.19 4.93
2048 3223 1.476891 GGTCAGCGAGTACAGGATCAA 59.523 52.381 0.00 0.00 0.00 2.57
2108 3843 2.169789 CACGAGCTGGCTTCATCGG 61.170 63.158 0.00 0.00 39.42 4.18
2598 4333 4.131596 GGCTAGCCATATCGTTTGGTTTA 58.868 43.478 29.33 0.00 36.57 2.01
2804 4539 1.670406 AAAGAGACTGCGCTGCTGG 60.670 57.895 14.80 0.00 0.00 4.85
2874 4609 3.659444 GCGTTCAAGACACGAAATGAAAG 59.341 43.478 0.00 0.00 40.20 2.62
2886 4622 4.720273 ACGAAATGAAAGAGGGGGTATACT 59.280 41.667 2.25 0.00 0.00 2.12
2911 4647 7.532571 TGAAGCATGTATCTTCTTCATTGTTG 58.467 34.615 11.36 0.00 39.70 3.33
2990 4735 9.646427 AGATACATGTTCTACTTCTCAGTTTTC 57.354 33.333 2.30 0.00 34.06 2.29
2991 4736 9.424319 GATACATGTTCTACTTCTCAGTTTTCA 57.576 33.333 2.30 0.00 34.06 2.69
2992 4737 9.778741 ATACATGTTCTACTTCTCAGTTTTCAA 57.221 29.630 2.30 0.00 34.06 2.69
2993 4738 8.682936 ACATGTTCTACTTCTCAGTTTTCAAT 57.317 30.769 0.00 0.00 34.06 2.57
2994 4739 9.125026 ACATGTTCTACTTCTCAGTTTTCAATT 57.875 29.630 0.00 0.00 34.06 2.32
2995 4740 9.956720 CATGTTCTACTTCTCAGTTTTCAATTT 57.043 29.630 0.00 0.00 34.06 1.82
3009 4754 9.520204 CAGTTTTCAATTTCACTCAAACACTAT 57.480 29.630 0.00 0.00 0.00 2.12
3061 4806 2.093106 AGCTCACGAGAAATACGAGGT 58.907 47.619 0.00 0.00 34.70 3.85
3124 4870 3.476552 TCTTAAGCCCACTTGTGTTGAG 58.523 45.455 0.00 0.00 36.57 3.02
3180 4951 8.660373 ACAAAGTCGATTTTATCAGAGATGAAC 58.340 33.333 5.52 0.00 0.00 3.18
3230 5001 6.358974 AATCCCACCATTTCTTTTTACCTG 57.641 37.500 0.00 0.00 0.00 4.00
3309 5080 1.910819 GTTGTGTCATAAAATGCCGCG 59.089 47.619 0.00 0.00 0.00 6.46
3345 5116 6.942532 TTTGTTGTAAGAATTGCTCTGAGT 57.057 33.333 6.53 0.00 33.37 3.41
3376 5156 4.026475 GCGTGAACATGTATTAGCTCTGAC 60.026 45.833 0.00 0.00 0.00 3.51
3425 5205 6.568653 GCATCTGGTTTCTTTTGTAGGACTTC 60.569 42.308 0.00 0.00 0.00 3.01
3472 5252 4.042187 GGGGTTCCTATGTGCTATCAAGAT 59.958 45.833 0.00 0.00 0.00 2.40
3492 5272 9.431690 TCAAGATGGCAGATTATAGCTCTATAT 57.568 33.333 0.00 0.00 0.00 0.86
3508 5288 8.372877 AGCTCTATATGAACTTACAGGCATAT 57.627 34.615 0.00 0.00 37.59 1.78
3581 5361 9.946165 GTTTCTATGCAATATAGTTTGGTAACC 57.054 33.333 0.00 0.00 34.71 2.85
3694 5484 6.633234 GCAAAAAGTTTAGTGCACTCTTACTC 59.367 38.462 25.56 9.21 36.97 2.59
3695 5485 7.467403 GCAAAAAGTTTAGTGCACTCTTACTCT 60.467 37.037 25.56 9.19 36.97 3.24
3696 5486 7.484035 AAAAGTTTAGTGCACTCTTACTCTG 57.516 36.000 25.56 0.00 0.00 3.35
3697 5487 4.561105 AGTTTAGTGCACTCTTACTCTGC 58.439 43.478 25.56 4.72 0.00 4.26
3698 5488 4.282195 AGTTTAGTGCACTCTTACTCTGCT 59.718 41.667 25.56 6.92 0.00 4.24
3699 5489 4.873746 TTAGTGCACTCTTACTCTGCTT 57.126 40.909 25.56 0.00 0.00 3.91
3700 5490 5.977489 TTAGTGCACTCTTACTCTGCTTA 57.023 39.130 25.56 0.00 0.00 3.09
3701 5491 4.448537 AGTGCACTCTTACTCTGCTTAG 57.551 45.455 15.25 0.00 0.00 2.18
3702 5492 3.829601 AGTGCACTCTTACTCTGCTTAGT 59.170 43.478 15.25 0.00 0.00 2.24
3739 5529 8.887717 ACAGTAAATCTTGATCTAACTCAATGC 58.112 33.333 0.00 0.00 34.76 3.56
3745 5535 4.824479 TGATCTAACTCAATGCACCTCA 57.176 40.909 0.00 0.00 0.00 3.86
3753 5543 3.072184 ACTCAATGCACCTCAAAGAGAGT 59.928 43.478 0.00 0.00 43.12 3.24
3768 5560 5.948992 AAGAGAGTACAAAATGCACCTTC 57.051 39.130 0.00 0.00 0.00 3.46
3769 5561 4.327680 AGAGAGTACAAAATGCACCTTCC 58.672 43.478 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 13 0.531974 TTGAAAGTCGTGGCTTCGCT 60.532 50.000 0.00 0.00 0.00 4.93
21 23 5.116180 TCCCACTATTATGCTTGAAAGTCG 58.884 41.667 0.00 0.00 0.00 4.18
25 27 5.527214 CGTGATCCCACTATTATGCTTGAAA 59.473 40.000 0.00 0.00 41.06 2.69
34 36 3.254903 CCATCGTCGTGATCCCACTATTA 59.745 47.826 0.00 0.00 41.06 0.98
51 53 2.002586 CAAGCAGTACACCTTCCATCG 58.997 52.381 0.00 0.00 0.00 3.84
57 59 3.135895 ACTTACCACAAGCAGTACACCTT 59.864 43.478 0.00 0.00 0.00 3.50
58 60 2.704065 ACTTACCACAAGCAGTACACCT 59.296 45.455 0.00 0.00 0.00 4.00
69 71 2.910319 ACAGCCCTATGACTTACCACAA 59.090 45.455 0.00 0.00 0.00 3.33
74 76 4.081087 TGGAAGAACAGCCCTATGACTTAC 60.081 45.833 0.00 0.00 0.00 2.34
75 77 4.081087 GTGGAAGAACAGCCCTATGACTTA 60.081 45.833 0.00 0.00 0.00 2.24
88 90 3.448093 TGCATTATGGGTGGAAGAACA 57.552 42.857 0.00 0.00 0.00 3.18
116 118 1.412710 TCGGACATACTTGGGAGCATC 59.587 52.381 0.00 0.00 0.00 3.91
118 120 0.535335 GTCGGACATACTTGGGAGCA 59.465 55.000 2.62 0.00 0.00 4.26
119 121 0.179081 GGTCGGACATACTTGGGAGC 60.179 60.000 10.76 0.00 0.00 4.70
128 130 1.412710 GCAAGAGGATGGTCGGACATA 59.587 52.381 10.76 0.00 0.00 2.29
132 134 0.537188 GAAGCAAGAGGATGGTCGGA 59.463 55.000 0.00 0.00 0.00 4.55
158 160 4.536765 AGGACACAAAGAAGTTGATGGTT 58.463 39.130 0.00 0.00 39.87 3.67
159 161 4.137543 GAGGACACAAAGAAGTTGATGGT 58.862 43.478 0.00 0.00 39.87 3.55
208 213 3.035363 AGGTTTTGATCCGGGTTTTTGT 58.965 40.909 0.00 0.00 0.00 2.83
299 306 5.478332 AGACTGATAGCATATGACATTCCGA 59.522 40.000 6.97 0.00 0.00 4.55
307 314 6.015940 ACGACAATGAGACTGATAGCATATGA 60.016 38.462 6.97 0.00 0.00 2.15
320 327 6.291849 CCAAAAGATATCGACGACAATGAGAC 60.292 42.308 0.00 0.00 0.00 3.36
348 356 2.601266 CGGTTTGGTTGTGCTTAGTTCG 60.601 50.000 0.00 0.00 0.00 3.95
356 364 1.372872 GCATCCGGTTTGGTTGTGC 60.373 57.895 0.00 0.00 39.30 4.57
358 366 1.272212 GAATGCATCCGGTTTGGTTGT 59.728 47.619 0.00 0.00 39.30 3.32
371 379 1.033746 CACTCGCCCAAGGAATGCAT 61.034 55.000 0.00 0.00 0.00 3.96
372 380 1.675310 CACTCGCCCAAGGAATGCA 60.675 57.895 0.00 0.00 0.00 3.96
452 461 6.161855 TCACCTCTTTCATATGCGTTATCT 57.838 37.500 0.00 0.00 0.00 1.98
461 470 8.954834 ATCTATCTGACTCACCTCTTTCATAT 57.045 34.615 0.00 0.00 0.00 1.78
477 486 2.371179 ACCGAGGTACCGATCTATCTGA 59.629 50.000 6.18 0.00 0.00 3.27
485 494 2.425143 TACTTCACCGAGGTACCGAT 57.575 50.000 6.18 0.00 0.00 4.18
521 533 1.203052 CAATCAAGCACTCGGCCATTT 59.797 47.619 2.24 0.00 46.50 2.32
532 544 0.457166 GCATTCTGCGCAATCAAGCA 60.457 50.000 13.05 0.00 41.55 3.91
559 571 0.037605 GTTGAGGATCGACGGTTGGT 60.038 55.000 0.00 0.00 40.19 3.67
587 599 0.813821 GAATTGGAGGCAGGCAAGAC 59.186 55.000 0.00 0.00 0.00 3.01
595 607 2.435437 TCTCATCGATGAATTGGAGGCA 59.565 45.455 27.09 2.93 36.18 4.75
607 619 5.500645 TCGTCTTGTTACATCTCATCGAT 57.499 39.130 0.00 0.00 0.00 3.59
609 621 4.038361 CCTCGTCTTGTTACATCTCATCG 58.962 47.826 0.00 0.00 0.00 3.84
612 624 3.614150 GCACCTCGTCTTGTTACATCTCA 60.614 47.826 0.00 0.00 0.00 3.27
650 662 5.753438 CCGATGATTCCGACATAGAGAAAAA 59.247 40.000 0.00 0.00 0.00 1.94
651 663 5.068591 TCCGATGATTCCGACATAGAGAAAA 59.931 40.000 0.00 0.00 0.00 2.29
652 664 4.583073 TCCGATGATTCCGACATAGAGAAA 59.417 41.667 0.00 0.00 0.00 2.52
653 665 4.023107 GTCCGATGATTCCGACATAGAGAA 60.023 45.833 0.00 0.00 32.41 2.87
654 666 3.502595 GTCCGATGATTCCGACATAGAGA 59.497 47.826 0.00 0.00 32.41 3.10
655 667 3.504134 AGTCCGATGATTCCGACATAGAG 59.496 47.826 0.00 0.00 33.95 2.43
656 668 3.487372 AGTCCGATGATTCCGACATAGA 58.513 45.455 0.00 0.00 33.95 1.98
657 669 3.366476 GGAGTCCGATGATTCCGACATAG 60.366 52.174 0.00 0.00 37.61 2.23
658 670 2.557056 GGAGTCCGATGATTCCGACATA 59.443 50.000 0.00 0.00 37.61 2.29
659 671 1.341531 GGAGTCCGATGATTCCGACAT 59.658 52.381 0.00 0.00 37.61 3.06
660 672 0.744874 GGAGTCCGATGATTCCGACA 59.255 55.000 0.00 0.00 37.61 4.35
661 673 3.571741 GGAGTCCGATGATTCCGAC 57.428 57.895 0.00 0.00 37.61 4.79
673 685 0.248702 GAGTCATCGCTTCGGAGTCC 60.249 60.000 0.00 0.00 0.00 3.85
674 686 0.736053 AGAGTCATCGCTTCGGAGTC 59.264 55.000 0.00 0.00 0.00 3.36
675 687 1.178276 AAGAGTCATCGCTTCGGAGT 58.822 50.000 0.00 0.00 0.00 3.85
676 688 2.287308 CCTAAGAGTCATCGCTTCGGAG 60.287 54.545 0.00 0.00 38.10 4.63
677 689 1.676529 CCTAAGAGTCATCGCTTCGGA 59.323 52.381 0.00 0.00 38.10 4.55
678 690 1.405821 ACCTAAGAGTCATCGCTTCGG 59.594 52.381 0.00 0.00 40.32 4.30
679 691 2.853731 ACCTAAGAGTCATCGCTTCG 57.146 50.000 0.00 0.00 35.49 3.79
680 692 3.619038 CCAAACCTAAGAGTCATCGCTTC 59.381 47.826 0.00 0.00 35.49 3.86
681 693 3.008049 ACCAAACCTAAGAGTCATCGCTT 59.992 43.478 0.00 0.00 37.46 4.68
682 694 2.567615 ACCAAACCTAAGAGTCATCGCT 59.432 45.455 0.00 0.00 0.00 4.93
683 695 2.973945 ACCAAACCTAAGAGTCATCGC 58.026 47.619 0.00 0.00 0.00 4.58
684 696 6.164176 ACTAAACCAAACCTAAGAGTCATCG 58.836 40.000 0.00 0.00 0.00 3.84
685 697 7.878644 AGAACTAAACCAAACCTAAGAGTCATC 59.121 37.037 0.00 0.00 0.00 2.92
686 698 7.746703 AGAACTAAACCAAACCTAAGAGTCAT 58.253 34.615 0.00 0.00 0.00 3.06
687 699 7.133133 AGAACTAAACCAAACCTAAGAGTCA 57.867 36.000 0.00 0.00 0.00 3.41
688 700 7.520131 GCAAGAACTAAACCAAACCTAAGAGTC 60.520 40.741 0.00 0.00 0.00 3.36
689 701 6.262496 GCAAGAACTAAACCAAACCTAAGAGT 59.738 38.462 0.00 0.00 0.00 3.24
690 702 6.262273 TGCAAGAACTAAACCAAACCTAAGAG 59.738 38.462 0.00 0.00 0.00 2.85
691 703 6.038936 GTGCAAGAACTAAACCAAACCTAAGA 59.961 38.462 0.00 0.00 0.00 2.10
692 704 6.183360 TGTGCAAGAACTAAACCAAACCTAAG 60.183 38.462 0.00 0.00 0.00 2.18
693 705 5.652891 TGTGCAAGAACTAAACCAAACCTAA 59.347 36.000 0.00 0.00 0.00 2.69
694 706 5.194432 TGTGCAAGAACTAAACCAAACCTA 58.806 37.500 0.00 0.00 0.00 3.08
695 707 4.020543 TGTGCAAGAACTAAACCAAACCT 58.979 39.130 0.00 0.00 0.00 3.50
696 708 4.379339 TGTGCAAGAACTAAACCAAACC 57.621 40.909 0.00 0.00 0.00 3.27
697 709 6.183360 CCTTTTGTGCAAGAACTAAACCAAAC 60.183 38.462 0.00 0.00 0.00 2.93
698 710 5.872070 CCTTTTGTGCAAGAACTAAACCAAA 59.128 36.000 0.00 0.00 0.00 3.28
699 711 5.415221 CCTTTTGTGCAAGAACTAAACCAA 58.585 37.500 0.00 0.00 0.00 3.67
700 712 4.679372 GCCTTTTGTGCAAGAACTAAACCA 60.679 41.667 0.00 0.00 0.00 3.67
701 713 3.802139 GCCTTTTGTGCAAGAACTAAACC 59.198 43.478 0.00 0.00 0.00 3.27
702 714 4.429108 TGCCTTTTGTGCAAGAACTAAAC 58.571 39.130 0.00 0.00 35.40 2.01
703 715 4.400884 TCTGCCTTTTGTGCAAGAACTAAA 59.599 37.500 0.00 0.00 38.46 1.85
704 716 3.951037 TCTGCCTTTTGTGCAAGAACTAA 59.049 39.130 0.00 0.00 38.46 2.24
705 717 3.550820 TCTGCCTTTTGTGCAAGAACTA 58.449 40.909 0.00 0.00 38.46 2.24
706 718 2.378038 TCTGCCTTTTGTGCAAGAACT 58.622 42.857 0.00 0.00 38.46 3.01
707 719 2.869233 TCTGCCTTTTGTGCAAGAAC 57.131 45.000 0.00 0.00 38.46 3.01
708 720 3.719924 CATTCTGCCTTTTGTGCAAGAA 58.280 40.909 0.00 0.00 38.46 2.52
709 721 2.546373 GCATTCTGCCTTTTGTGCAAGA 60.546 45.455 0.00 0.00 38.46 3.02
710 722 1.796459 GCATTCTGCCTTTTGTGCAAG 59.204 47.619 0.00 0.00 38.46 4.01
711 723 1.138464 TGCATTCTGCCTTTTGTGCAA 59.862 42.857 0.00 0.00 44.23 4.08
712 724 0.751452 TGCATTCTGCCTTTTGTGCA 59.249 45.000 0.00 0.00 44.23 4.57
713 725 1.528161 GTTGCATTCTGCCTTTTGTGC 59.472 47.619 0.00 0.00 44.23 4.57
714 726 2.137523 GGTTGCATTCTGCCTTTTGTG 58.862 47.619 0.00 0.00 44.23 3.33
715 727 1.269726 CGGTTGCATTCTGCCTTTTGT 60.270 47.619 0.00 0.00 44.23 2.83
716 728 1.269726 ACGGTTGCATTCTGCCTTTTG 60.270 47.619 0.00 0.00 44.23 2.44
717 729 1.000274 GACGGTTGCATTCTGCCTTTT 60.000 47.619 0.00 0.00 44.23 2.27
718 730 0.598065 GACGGTTGCATTCTGCCTTT 59.402 50.000 0.00 0.00 44.23 3.11
719 731 0.250901 AGACGGTTGCATTCTGCCTT 60.251 50.000 0.00 0.00 44.23 4.35
720 732 0.250901 AAGACGGTTGCATTCTGCCT 60.251 50.000 0.00 0.00 44.23 4.75
721 733 0.598065 AAAGACGGTTGCATTCTGCC 59.402 50.000 0.00 0.00 44.23 4.85
722 734 2.422276 AAAAGACGGTTGCATTCTGC 57.578 45.000 0.00 0.00 45.29 4.26
723 735 7.807907 AGTTAATAAAAAGACGGTTGCATTCTG 59.192 33.333 0.00 0.00 0.00 3.02
724 736 7.882179 AGTTAATAAAAAGACGGTTGCATTCT 58.118 30.769 0.00 0.00 0.00 2.40
725 737 9.783256 ATAGTTAATAAAAAGACGGTTGCATTC 57.217 29.630 0.00 0.00 0.00 2.67
726 738 9.567848 CATAGTTAATAAAAAGACGGTTGCATT 57.432 29.630 0.00 0.00 0.00 3.56
727 739 8.952278 TCATAGTTAATAAAAAGACGGTTGCAT 58.048 29.630 0.00 0.00 0.00 3.96
728 740 8.325421 TCATAGTTAATAAAAAGACGGTTGCA 57.675 30.769 0.00 0.00 0.00 4.08
758 770 8.090214 CCTTCATTTTGTGTCAATAACTTCCAT 58.910 33.333 0.00 0.00 0.00 3.41
759 771 7.286546 TCCTTCATTTTGTGTCAATAACTTCCA 59.713 33.333 0.00 0.00 0.00 3.53
760 772 7.595130 GTCCTTCATTTTGTGTCAATAACTTCC 59.405 37.037 0.00 0.00 0.00 3.46
761 773 8.134895 TGTCCTTCATTTTGTGTCAATAACTTC 58.865 33.333 0.00 0.00 0.00 3.01
762 774 8.006298 TGTCCTTCATTTTGTGTCAATAACTT 57.994 30.769 0.00 0.00 0.00 2.66
763 775 7.581213 TGTCCTTCATTTTGTGTCAATAACT 57.419 32.000 0.00 0.00 0.00 2.24
764 776 8.816640 ATTGTCCTTCATTTTGTGTCAATAAC 57.183 30.769 0.00 0.00 0.00 1.89
765 777 8.859090 AGATTGTCCTTCATTTTGTGTCAATAA 58.141 29.630 0.00 0.00 0.00 1.40
766 778 8.298854 CAGATTGTCCTTCATTTTGTGTCAATA 58.701 33.333 0.00 0.00 0.00 1.90
767 779 7.149973 CAGATTGTCCTTCATTTTGTGTCAAT 58.850 34.615 0.00 0.00 0.00 2.57
768 780 6.506147 CAGATTGTCCTTCATTTTGTGTCAA 58.494 36.000 0.00 0.00 0.00 3.18
769 781 5.507817 GCAGATTGTCCTTCATTTTGTGTCA 60.508 40.000 0.00 0.00 0.00 3.58
770 782 4.919754 GCAGATTGTCCTTCATTTTGTGTC 59.080 41.667 0.00 0.00 0.00 3.67
771 783 4.341806 TGCAGATTGTCCTTCATTTTGTGT 59.658 37.500 0.00 0.00 0.00 3.72
772 784 4.873817 TGCAGATTGTCCTTCATTTTGTG 58.126 39.130 0.00 0.00 0.00 3.33
773 785 5.302568 TCTTGCAGATTGTCCTTCATTTTGT 59.697 36.000 0.00 0.00 0.00 2.83
774 786 5.775686 TCTTGCAGATTGTCCTTCATTTTG 58.224 37.500 0.00 0.00 0.00 2.44
775 787 5.537674 ACTCTTGCAGATTGTCCTTCATTTT 59.462 36.000 0.00 0.00 0.00 1.82
776 788 5.075493 ACTCTTGCAGATTGTCCTTCATTT 58.925 37.500 0.00 0.00 0.00 2.32
777 789 4.660168 ACTCTTGCAGATTGTCCTTCATT 58.340 39.130 0.00 0.00 0.00 2.57
778 790 4.298103 ACTCTTGCAGATTGTCCTTCAT 57.702 40.909 0.00 0.00 0.00 2.57
779 791 3.777106 ACTCTTGCAGATTGTCCTTCA 57.223 42.857 0.00 0.00 0.00 3.02
780 792 3.817647 ACAACTCTTGCAGATTGTCCTTC 59.182 43.478 0.00 0.00 29.30 3.46
781 793 3.567164 CACAACTCTTGCAGATTGTCCTT 59.433 43.478 4.54 0.00 33.05 3.36
782 794 3.144506 CACAACTCTTGCAGATTGTCCT 58.855 45.455 4.54 0.00 33.05 3.85
783 795 2.227388 CCACAACTCTTGCAGATTGTCC 59.773 50.000 4.54 0.00 33.05 4.02
784 796 2.351157 GCCACAACTCTTGCAGATTGTC 60.351 50.000 4.54 0.00 33.05 3.18
785 797 1.610522 GCCACAACTCTTGCAGATTGT 59.389 47.619 0.00 0.00 35.69 2.71
786 798 1.400629 CGCCACAACTCTTGCAGATTG 60.401 52.381 0.00 0.00 0.00 2.67
787 799 0.877071 CGCCACAACTCTTGCAGATT 59.123 50.000 0.00 0.00 0.00 2.40
788 800 0.957395 CCGCCACAACTCTTGCAGAT 60.957 55.000 0.00 0.00 0.00 2.90
789 801 1.597854 CCGCCACAACTCTTGCAGA 60.598 57.895 0.00 0.00 0.00 4.26
790 802 2.949106 CCGCCACAACTCTTGCAG 59.051 61.111 0.00 0.00 0.00 4.41
791 803 3.286751 GCCGCCACAACTCTTGCA 61.287 61.111 0.00 0.00 0.00 4.08
792 804 3.259425 CTGCCGCCACAACTCTTGC 62.259 63.158 0.00 0.00 0.00 4.01
793 805 1.845809 GACTGCCGCCACAACTCTTG 61.846 60.000 0.00 0.00 0.00 3.02
794 806 1.598130 GACTGCCGCCACAACTCTT 60.598 57.895 0.00 0.00 0.00 2.85
795 807 2.031163 GACTGCCGCCACAACTCT 59.969 61.111 0.00 0.00 0.00 3.24
796 808 1.569479 GAAGACTGCCGCCACAACTC 61.569 60.000 0.00 0.00 0.00 3.01
797 809 1.598130 GAAGACTGCCGCCACAACT 60.598 57.895 0.00 0.00 0.00 3.16
798 810 2.946762 GAAGACTGCCGCCACAAC 59.053 61.111 0.00 0.00 0.00 3.32
799 811 2.449031 ATCGAAGACTGCCGCCACAA 62.449 55.000 0.00 0.00 42.51 3.33
800 812 2.942796 ATCGAAGACTGCCGCCACA 61.943 57.895 0.00 0.00 42.51 4.17
801 813 2.125512 ATCGAAGACTGCCGCCAC 60.126 61.111 0.00 0.00 42.51 5.01
802 814 1.960040 ATCATCGAAGACTGCCGCCA 61.960 55.000 0.00 0.00 42.51 5.69
803 815 0.811616 AATCATCGAAGACTGCCGCC 60.812 55.000 0.00 0.00 42.51 6.13
804 816 1.523095 GTAATCATCGAAGACTGCCGC 59.477 52.381 0.00 0.00 42.51 6.53
805 817 3.085443 AGTAATCATCGAAGACTGCCG 57.915 47.619 0.00 0.00 42.51 5.69
806 818 6.701841 TGAAATAGTAATCATCGAAGACTGCC 59.298 38.462 0.00 0.00 42.51 4.85
807 819 7.700322 TGAAATAGTAATCATCGAAGACTGC 57.300 36.000 0.00 0.00 42.51 4.40
808 820 8.706936 CCATGAAATAGTAATCATCGAAGACTG 58.293 37.037 0.00 0.00 42.51 3.51
809 821 7.386299 GCCATGAAATAGTAATCATCGAAGACT 59.614 37.037 0.00 0.00 42.51 3.24
810 822 7.171508 TGCCATGAAATAGTAATCATCGAAGAC 59.828 37.037 0.00 0.00 42.51 3.01
811 823 7.216494 TGCCATGAAATAGTAATCATCGAAGA 58.784 34.615 0.00 0.00 45.75 2.87
812 824 7.425577 TGCCATGAAATAGTAATCATCGAAG 57.574 36.000 0.00 0.00 34.12 3.79
813 825 7.445096 ACATGCCATGAAATAGTAATCATCGAA 59.555 33.333 12.53 0.00 34.12 3.71
814 826 6.936335 ACATGCCATGAAATAGTAATCATCGA 59.064 34.615 12.53 0.00 34.12 3.59
815 827 7.019418 CACATGCCATGAAATAGTAATCATCG 58.981 38.462 12.53 0.00 34.12 3.84
816 828 8.102800 TCACATGCCATGAAATAGTAATCATC 57.897 34.615 12.53 0.00 34.12 2.92
817 829 8.645814 ATCACATGCCATGAAATAGTAATCAT 57.354 30.769 12.53 0.00 36.74 2.45
818 830 8.467963 AATCACATGCCATGAAATAGTAATCA 57.532 30.769 12.53 0.00 0.00 2.57
819 831 9.754382 AAAATCACATGCCATGAAATAGTAATC 57.246 29.630 12.53 0.00 0.00 1.75
821 833 9.585099 GAAAAATCACATGCCATGAAATAGTAA 57.415 29.630 12.53 0.00 0.00 2.24
822 834 8.970020 AGAAAAATCACATGCCATGAAATAGTA 58.030 29.630 12.53 0.00 0.00 1.82
823 835 7.844009 AGAAAAATCACATGCCATGAAATAGT 58.156 30.769 12.53 0.00 0.00 2.12
824 836 8.712285 AAGAAAAATCACATGCCATGAAATAG 57.288 30.769 12.53 0.00 0.00 1.73
825 837 8.937884 CAAAGAAAAATCACATGCCATGAAATA 58.062 29.630 12.53 0.00 0.00 1.40
826 838 7.662258 TCAAAGAAAAATCACATGCCATGAAAT 59.338 29.630 12.53 1.24 0.00 2.17
827 839 6.990939 TCAAAGAAAAATCACATGCCATGAAA 59.009 30.769 12.53 0.00 0.00 2.69
828 840 6.424509 GTCAAAGAAAAATCACATGCCATGAA 59.575 34.615 12.53 0.00 0.00 2.57
829 841 5.927689 GTCAAAGAAAAATCACATGCCATGA 59.072 36.000 12.53 0.00 0.00 3.07
830 842 5.929992 AGTCAAAGAAAAATCACATGCCATG 59.070 36.000 2.40 2.40 0.00 3.66
831 843 6.105397 AGTCAAAGAAAAATCACATGCCAT 57.895 33.333 0.00 0.00 0.00 4.40
832 844 5.534207 AGTCAAAGAAAAATCACATGCCA 57.466 34.783 0.00 0.00 0.00 4.92
833 845 6.913170 TCTAGTCAAAGAAAAATCACATGCC 58.087 36.000 0.00 0.00 0.00 4.40
834 846 8.976986 AATCTAGTCAAAGAAAAATCACATGC 57.023 30.769 0.00 0.00 0.00 4.06
835 847 9.270576 CGAATCTAGTCAAAGAAAAATCACATG 57.729 33.333 0.00 0.00 0.00 3.21
836 848 9.219603 TCGAATCTAGTCAAAGAAAAATCACAT 57.780 29.630 0.00 0.00 0.00 3.21
837 849 8.601845 TCGAATCTAGTCAAAGAAAAATCACA 57.398 30.769 0.00 0.00 0.00 3.58
838 850 9.319223 GTTCGAATCTAGTCAAAGAAAAATCAC 57.681 33.333 0.00 0.00 0.00 3.06
839 851 9.051679 TGTTCGAATCTAGTCAAAGAAAAATCA 57.948 29.630 0.00 0.00 0.00 2.57
842 854 9.663904 CAATGTTCGAATCTAGTCAAAGAAAAA 57.336 29.630 0.00 0.00 0.00 1.94
843 855 8.289618 CCAATGTTCGAATCTAGTCAAAGAAAA 58.710 33.333 0.00 0.00 0.00 2.29
844 856 7.573096 GCCAATGTTCGAATCTAGTCAAAGAAA 60.573 37.037 0.00 0.00 0.00 2.52
845 857 6.128282 GCCAATGTTCGAATCTAGTCAAAGAA 60.128 38.462 0.00 0.00 0.00 2.52
846 858 5.351465 GCCAATGTTCGAATCTAGTCAAAGA 59.649 40.000 0.00 0.00 0.00 2.52
847 859 5.352569 AGCCAATGTTCGAATCTAGTCAAAG 59.647 40.000 0.00 0.00 0.00 2.77
848 860 5.245531 AGCCAATGTTCGAATCTAGTCAAA 58.754 37.500 0.00 0.00 0.00 2.69
849 861 4.832248 AGCCAATGTTCGAATCTAGTCAA 58.168 39.130 0.00 0.00 0.00 3.18
850 862 4.081697 TGAGCCAATGTTCGAATCTAGTCA 60.082 41.667 0.00 0.00 0.00 3.41
851 863 4.433615 TGAGCCAATGTTCGAATCTAGTC 58.566 43.478 0.00 0.00 0.00 2.59
852 864 4.471904 TGAGCCAATGTTCGAATCTAGT 57.528 40.909 0.00 0.00 0.00 2.57
853 865 6.146837 CCTTATGAGCCAATGTTCGAATCTAG 59.853 42.308 0.00 0.00 0.00 2.43
854 866 5.991606 CCTTATGAGCCAATGTTCGAATCTA 59.008 40.000 0.00 0.00 0.00 1.98
855 867 4.818546 CCTTATGAGCCAATGTTCGAATCT 59.181 41.667 0.00 0.00 0.00 2.40
856 868 4.576463 ACCTTATGAGCCAATGTTCGAATC 59.424 41.667 0.00 0.00 0.00 2.52
857 869 4.526970 ACCTTATGAGCCAATGTTCGAAT 58.473 39.130 0.00 0.00 0.00 3.34
858 870 3.950397 ACCTTATGAGCCAATGTTCGAA 58.050 40.909 0.00 0.00 0.00 3.71
859 871 3.627395 ACCTTATGAGCCAATGTTCGA 57.373 42.857 0.00 0.00 0.00 3.71
860 872 3.731867 GCAACCTTATGAGCCAATGTTCG 60.732 47.826 0.00 0.00 0.00 3.95
861 873 3.445096 AGCAACCTTATGAGCCAATGTTC 59.555 43.478 0.00 0.00 0.00 3.18
862 874 3.194116 CAGCAACCTTATGAGCCAATGTT 59.806 43.478 0.00 0.00 0.00 2.71
863 875 2.756760 CAGCAACCTTATGAGCCAATGT 59.243 45.455 0.00 0.00 0.00 2.71
864 876 3.018856 TCAGCAACCTTATGAGCCAATG 58.981 45.455 0.00 0.00 0.00 2.82
865 877 3.019564 GTCAGCAACCTTATGAGCCAAT 58.980 45.455 0.00 0.00 0.00 3.16
866 878 2.436417 GTCAGCAACCTTATGAGCCAA 58.564 47.619 0.00 0.00 0.00 4.52
867 879 1.675714 CGTCAGCAACCTTATGAGCCA 60.676 52.381 0.00 0.00 0.00 4.75
868 880 1.009829 CGTCAGCAACCTTATGAGCC 58.990 55.000 0.00 0.00 0.00 4.70
869 881 2.010145 TCGTCAGCAACCTTATGAGC 57.990 50.000 0.00 0.00 0.00 4.26
870 882 3.589988 AGTTCGTCAGCAACCTTATGAG 58.410 45.455 0.00 0.00 0.00 2.90
871 883 3.678056 AGTTCGTCAGCAACCTTATGA 57.322 42.857 0.00 0.00 0.00 2.15
872 884 3.667960 GCAAGTTCGTCAGCAACCTTATG 60.668 47.826 0.00 0.00 0.00 1.90
873 885 2.484264 GCAAGTTCGTCAGCAACCTTAT 59.516 45.455 0.00 0.00 0.00 1.73
874 886 1.871039 GCAAGTTCGTCAGCAACCTTA 59.129 47.619 0.00 0.00 0.00 2.69
875 887 0.663153 GCAAGTTCGTCAGCAACCTT 59.337 50.000 0.00 0.00 0.00 3.50
876 888 0.179045 AGCAAGTTCGTCAGCAACCT 60.179 50.000 0.00 0.00 0.00 3.50
877 889 1.461127 CTAGCAAGTTCGTCAGCAACC 59.539 52.381 0.00 0.00 0.00 3.77
878 890 1.461127 CCTAGCAAGTTCGTCAGCAAC 59.539 52.381 0.00 0.00 0.00 4.17
879 891 1.795768 CCTAGCAAGTTCGTCAGCAA 58.204 50.000 0.00 0.00 0.00 3.91
880 892 0.670546 GCCTAGCAAGTTCGTCAGCA 60.671 55.000 0.00 0.00 0.00 4.41
881 893 0.390472 AGCCTAGCAAGTTCGTCAGC 60.390 55.000 0.00 0.00 0.00 4.26
882 894 2.803451 CTAGCCTAGCAAGTTCGTCAG 58.197 52.381 0.00 0.00 0.00 3.51
883 895 2.941453 CTAGCCTAGCAAGTTCGTCA 57.059 50.000 0.00 0.00 0.00 4.35
894 906 6.535508 AGTTACAGAAAATTTCGCTAGCCTAG 59.464 38.462 9.66 0.00 34.02 3.02
895 907 6.403878 AGTTACAGAAAATTTCGCTAGCCTA 58.596 36.000 9.66 0.00 34.02 3.93
896 908 5.246307 AGTTACAGAAAATTTCGCTAGCCT 58.754 37.500 9.66 0.00 34.02 4.58
897 909 5.547181 AGTTACAGAAAATTTCGCTAGCC 57.453 39.130 9.66 0.00 34.02 3.93
898 910 7.488471 TCTCTAGTTACAGAAAATTTCGCTAGC 59.512 37.037 4.06 4.06 34.02 3.42
899 911 8.912787 TCTCTAGTTACAGAAAATTTCGCTAG 57.087 34.615 0.00 8.38 34.02 3.42
900 912 9.871238 AATCTCTAGTTACAGAAAATTTCGCTA 57.129 29.630 0.00 0.13 34.02 4.26
901 913 8.660373 CAATCTCTAGTTACAGAAAATTTCGCT 58.340 33.333 0.00 0.00 34.02 4.93
902 914 7.905493 CCAATCTCTAGTTACAGAAAATTTCGC 59.095 37.037 0.00 0.00 34.02 4.70
903 915 8.936864 ACCAATCTCTAGTTACAGAAAATTTCG 58.063 33.333 0.00 0.00 34.02 3.46
907 919 9.793259 TCAAACCAATCTCTAGTTACAGAAAAT 57.207 29.630 0.00 0.00 0.00 1.82
908 920 9.621629 TTCAAACCAATCTCTAGTTACAGAAAA 57.378 29.630 0.00 0.00 0.00 2.29
909 921 9.273016 CTTCAAACCAATCTCTAGTTACAGAAA 57.727 33.333 0.00 0.00 0.00 2.52
910 922 8.647796 TCTTCAAACCAATCTCTAGTTACAGAA 58.352 33.333 0.00 0.00 0.00 3.02
911 923 8.190326 TCTTCAAACCAATCTCTAGTTACAGA 57.810 34.615 0.00 0.00 0.00 3.41
912 924 7.064016 GCTCTTCAAACCAATCTCTAGTTACAG 59.936 40.741 0.00 0.00 0.00 2.74
913 925 6.874134 GCTCTTCAAACCAATCTCTAGTTACA 59.126 38.462 0.00 0.00 0.00 2.41
914 926 6.314152 GGCTCTTCAAACCAATCTCTAGTTAC 59.686 42.308 0.00 0.00 0.00 2.50
915 927 6.213600 AGGCTCTTCAAACCAATCTCTAGTTA 59.786 38.462 0.00 0.00 0.00 2.24
916 928 5.013599 AGGCTCTTCAAACCAATCTCTAGTT 59.986 40.000 0.00 0.00 0.00 2.24
917 929 4.534103 AGGCTCTTCAAACCAATCTCTAGT 59.466 41.667 0.00 0.00 0.00 2.57
918 930 5.096443 AGGCTCTTCAAACCAATCTCTAG 57.904 43.478 0.00 0.00 0.00 2.43
919 931 5.483937 TGTAGGCTCTTCAAACCAATCTCTA 59.516 40.000 0.00 0.00 0.00 2.43
920 932 4.287067 TGTAGGCTCTTCAAACCAATCTCT 59.713 41.667 0.00 0.00 0.00 3.10
921 933 4.579869 TGTAGGCTCTTCAAACCAATCTC 58.420 43.478 0.00 0.00 0.00 2.75
922 934 4.287067 TCTGTAGGCTCTTCAAACCAATCT 59.713 41.667 0.00 0.00 0.00 2.40
923 935 4.579869 TCTGTAGGCTCTTCAAACCAATC 58.420 43.478 0.00 0.00 0.00 2.67
924 936 4.640771 TCTGTAGGCTCTTCAAACCAAT 57.359 40.909 0.00 0.00 0.00 3.16
925 937 4.431416 TTCTGTAGGCTCTTCAAACCAA 57.569 40.909 0.00 0.00 0.00 3.67
926 938 4.640771 ATTCTGTAGGCTCTTCAAACCA 57.359 40.909 0.00 0.00 0.00 3.67
927 939 6.599638 ACAATATTCTGTAGGCTCTTCAAACC 59.400 38.462 0.00 0.00 0.00 3.27
928 940 7.617041 ACAATATTCTGTAGGCTCTTCAAAC 57.383 36.000 0.00 0.00 0.00 2.93
929 941 7.769044 GGTACAATATTCTGTAGGCTCTTCAAA 59.231 37.037 0.00 0.00 32.49 2.69
930 942 7.125811 AGGTACAATATTCTGTAGGCTCTTCAA 59.874 37.037 0.00 0.00 32.49 2.69
931 943 6.611642 AGGTACAATATTCTGTAGGCTCTTCA 59.388 38.462 0.00 0.00 32.49 3.02
932 944 7.014808 AGAGGTACAATATTCTGTAGGCTCTTC 59.985 40.741 0.00 0.00 32.49 2.87
933 945 6.841755 AGAGGTACAATATTCTGTAGGCTCTT 59.158 38.462 0.00 0.00 32.49 2.85
934 946 6.377912 AGAGGTACAATATTCTGTAGGCTCT 58.622 40.000 0.00 0.00 32.49 4.09
935 947 6.658188 AGAGGTACAATATTCTGTAGGCTC 57.342 41.667 0.00 0.00 32.49 4.70
936 948 6.841755 AGAAGAGGTACAATATTCTGTAGGCT 59.158 38.462 6.45 0.00 32.49 4.58
937 949 7.056844 AGAAGAGGTACAATATTCTGTAGGC 57.943 40.000 6.45 0.00 32.49 3.93
938 950 9.968870 GTAAGAAGAGGTACAATATTCTGTAGG 57.031 37.037 7.67 0.00 32.49 3.18
946 958 9.435570 ACACCTATGTAAGAAGAGGTACAATAT 57.564 33.333 0.00 0.00 40.41 1.28
947 959 8.834004 ACACCTATGTAAGAAGAGGTACAATA 57.166 34.615 0.00 0.00 40.41 1.90
948 960 7.735326 ACACCTATGTAAGAAGAGGTACAAT 57.265 36.000 0.00 0.00 40.41 2.71
949 961 8.654485 TTACACCTATGTAAGAAGAGGTACAA 57.346 34.615 0.00 0.00 44.62 2.41
1017 1029 1.299850 GCAGCGCGGGTTTTCTTTT 60.300 52.632 8.83 0.00 0.00 2.27
1022 1034 3.660111 GACAGCAGCGCGGGTTTT 61.660 61.111 10.16 0.00 0.00 2.43
1036 1048 2.425312 GGTTTGTGTGATTGTGTGGACA 59.575 45.455 0.00 0.00 0.00 4.02
1202 1215 3.151022 GCTGGACGGAGGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
1203 1216 2.043450 AGCTGGACGGAGGAGGAG 60.043 66.667 0.00 0.00 0.00 3.69
1204 1217 2.043852 GAGCTGGACGGAGGAGGA 60.044 66.667 0.00 0.00 0.00 3.71
1776 2950 2.740826 GCTCCGCACTTGCCGTAA 60.741 61.111 0.00 0.00 37.91 3.18
1965 3139 1.567537 GTTGCACGCGCTAAGAACA 59.432 52.632 5.73 0.00 39.64 3.18
2020 3194 2.099756 TGTACTCGCTGACCATCATCTG 59.900 50.000 0.00 0.00 0.00 2.90
2048 3223 1.152943 TAGTGCTCGATCCTCGGCT 60.153 57.895 9.99 2.26 40.88 5.52
2108 3843 2.060980 ACGACATCCAGGGCCTCTC 61.061 63.158 0.95 0.00 0.00 3.20
2115 3850 1.448540 GCCAGACACGACATCCAGG 60.449 63.158 0.00 0.00 0.00 4.45
2172 3907 2.021068 GCCTGGAGCATGCGTCTAGA 62.021 60.000 22.79 0.00 42.97 2.43
2598 4333 4.003788 CCGGGTGTCGCCTTGAGT 62.004 66.667 1.66 0.00 37.59 3.41
2804 4539 0.317854 GGGCACTCTCAACAAAACGC 60.318 55.000 0.00 0.00 0.00 4.84
2874 4609 2.706190 ACATGCTTCAGTATACCCCCTC 59.294 50.000 0.00 0.00 0.00 4.30
2911 4647 5.234543 GCTAATTTCGATCTGGACAACCTAC 59.765 44.000 0.00 0.00 37.04 3.18
3042 4787 2.452105 GACCTCGTATTTCTCGTGAGC 58.548 52.381 0.00 0.00 0.00 4.26
3164 4910 5.045651 TCCAGCAGGTTCATCTCTGATAAAA 60.046 40.000 0.00 0.00 35.89 1.52
3180 4951 1.614317 CCCCTTGTAGTTTCCAGCAGG 60.614 57.143 0.00 0.00 0.00 4.85
3345 5116 7.226523 AGCTAATACATGTTCACGCAATTCATA 59.773 33.333 2.30 0.00 0.00 2.15
3376 5156 7.122650 TGCCAGTTTAGAGAATATTTCCCAAAG 59.877 37.037 0.00 0.00 0.00 2.77
3425 5205 6.166984 TCTAGAAGAATATTGTCAGGCAGG 57.833 41.667 0.00 0.00 0.00 4.85
3472 5252 8.601047 AGTTCATATAGAGCTATAATCTGCCA 57.399 34.615 0.00 0.00 35.88 4.92
3676 5457 4.561105 AGCAGAGTAAGAGTGCACTAAAC 58.439 43.478 21.73 17.40 39.80 2.01
3739 5529 5.239306 TGCATTTTGTACTCTCTTTGAGGTG 59.761 40.000 0.00 0.00 46.72 4.00
3745 5535 5.241728 GGAAGGTGCATTTTGTACTCTCTTT 59.758 40.000 0.00 0.00 33.35 2.52
3753 5543 4.046286 AGGATGGAAGGTGCATTTTGTA 57.954 40.909 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.