Multiple sequence alignment - TraesCS5A01G482500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G482500 chr5A 100.000 2743 0 0 1 2743 654094824 654092082 0.000000e+00 5066.0
1 TraesCS5A01G482500 chr5A 87.544 843 63 18 1 804 657768060 657768899 0.000000e+00 937.0
2 TraesCS5A01G482500 chr5A 83.586 725 60 23 1765 2454 383170734 383171434 2.320000e-175 625.0
3 TraesCS5A01G482500 chr5D 90.329 1427 82 24 321 1715 526914058 526912656 0.000000e+00 1820.0
4 TraesCS5A01G482500 chr5D 86.860 860 62 22 1 812 529852180 529853036 0.000000e+00 915.0
5 TraesCS5A01G482500 chr5D 96.468 453 16 0 1 453 526914649 526914197 0.000000e+00 749.0
6 TraesCS5A01G482500 chr5B 93.368 950 44 8 1 931 662984065 662983116 0.000000e+00 1387.0
7 TraesCS5A01G482500 chr5B 91.592 666 46 8 1045 1705 662983043 662982383 0.000000e+00 911.0
8 TraesCS5A01G482500 chr5B 86.114 857 62 27 1 804 669215968 669216820 0.000000e+00 870.0
9 TraesCS5A01G482500 chr5B 85.315 715 72 18 1755 2454 516024008 516024704 0.000000e+00 708.0
10 TraesCS5A01G482500 chr4A 86.272 692 66 20 1768 2454 157874399 157873732 0.000000e+00 725.0
11 TraesCS5A01G482500 chr4A 87.931 58 6 1 2681 2737 534810761 534810818 1.760000e-07 67.6
12 TraesCS5A01G482500 chr7B 86.212 689 67 17 1770 2454 23444279 23443615 0.000000e+00 721.0
13 TraesCS5A01G482500 chr7B 85.673 691 76 13 1766 2454 202993398 202992729 0.000000e+00 706.0
14 TraesCS5A01G482500 chr7B 97.727 44 1 0 2694 2737 123480916 123480959 2.930000e-10 76.8
15 TraesCS5A01G482500 chr3A 85.206 703 76 21 1755 2454 442773063 442773740 0.000000e+00 697.0
16 TraesCS5A01G482500 chr3A 89.796 49 5 0 2689 2737 632112887 632112935 2.280000e-06 63.9
17 TraesCS5A01G482500 chr1A 85.137 693 75 21 1765 2454 471475499 471474832 0.000000e+00 684.0
18 TraesCS5A01G482500 chr1A 85.468 406 34 11 1765 2156 568052220 568052614 1.530000e-107 399.0
19 TraesCS5A01G482500 chr7A 84.495 703 60 22 1768 2454 689415616 689414947 0.000000e+00 649.0
20 TraesCS5A01G482500 chr7A 82.955 704 79 17 1766 2454 717275482 717276159 5.060000e-167 597.0
21 TraesCS5A01G482500 chr7A 97.222 36 1 0 2452 2487 657079522 657079487 8.200000e-06 62.1
22 TraesCS5A01G482500 chr6A 83.593 707 76 22 1750 2454 322055227 322055895 6.450000e-176 627.0
23 TraesCS5A01G482500 chr6A 83.807 704 62 21 1765 2454 55929237 55928572 3.000000e-174 621.0
24 TraesCS5A01G482500 chr6A 92.308 52 3 1 2693 2743 282126492 282126441 3.790000e-09 73.1
25 TraesCS5A01G482500 chr6B 84.441 662 53 24 1766 2410 139359250 139358622 8.400000e-170 606.0
26 TraesCS5A01G482500 chr6B 82.837 705 66 24 1765 2454 481855079 481854415 5.090000e-162 580.0
27 TraesCS5A01G482500 chr2B 83.053 714 63 30 1755 2454 749857689 749858358 1.820000e-166 595.0
28 TraesCS5A01G482500 chr2B 81.224 245 27 13 1810 2050 606794598 606794827 2.170000e-41 180.0
29 TraesCS5A01G482500 chr2B 89.091 55 5 1 2689 2743 526415552 526415499 1.760000e-07 67.6
30 TraesCS5A01G482500 chr6D 89.890 455 41 5 2004 2454 22187896 22188349 5.090000e-162 580.0
31 TraesCS5A01G482500 chr6D 85.714 189 17 3 1765 1952 17227749 17227928 1.000000e-44 191.0
32 TraesCS5A01G482500 chr1B 81.011 653 52 32 1766 2415 18391978 18391395 1.160000e-123 453.0
33 TraesCS5A01G482500 chr1B 97.059 34 1 0 2456 2489 20038469 20038436 1.060000e-04 58.4
34 TraesCS5A01G482500 chrUn 88.136 59 6 1 2680 2738 65858905 65858962 4.900000e-08 69.4
35 TraesCS5A01G482500 chrUn 88.136 59 6 1 2680 2738 65982067 65982124 4.900000e-08 69.4
36 TraesCS5A01G482500 chr4B 90.196 51 4 1 2693 2743 428878423 428878472 6.340000e-07 65.8
37 TraesCS5A01G482500 chr4B 88.679 53 4 1 2693 2743 544603968 544603916 2.280000e-06 63.9
38 TraesCS5A01G482500 chr7D 94.595 37 2 0 2460 2496 204112240 204112276 1.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G482500 chr5A 654092082 654094824 2742 True 5066.0 5066 100.0000 1 2743 1 chr5A.!!$R1 2742
1 TraesCS5A01G482500 chr5A 657768060 657768899 839 False 937.0 937 87.5440 1 804 1 chr5A.!!$F2 803
2 TraesCS5A01G482500 chr5A 383170734 383171434 700 False 625.0 625 83.5860 1765 2454 1 chr5A.!!$F1 689
3 TraesCS5A01G482500 chr5D 526912656 526914649 1993 True 1284.5 1820 93.3985 1 1715 2 chr5D.!!$R1 1714
4 TraesCS5A01G482500 chr5D 529852180 529853036 856 False 915.0 915 86.8600 1 812 1 chr5D.!!$F1 811
5 TraesCS5A01G482500 chr5B 662982383 662984065 1682 True 1149.0 1387 92.4800 1 1705 2 chr5B.!!$R1 1704
6 TraesCS5A01G482500 chr5B 669215968 669216820 852 False 870.0 870 86.1140 1 804 1 chr5B.!!$F2 803
7 TraesCS5A01G482500 chr5B 516024008 516024704 696 False 708.0 708 85.3150 1755 2454 1 chr5B.!!$F1 699
8 TraesCS5A01G482500 chr4A 157873732 157874399 667 True 725.0 725 86.2720 1768 2454 1 chr4A.!!$R1 686
9 TraesCS5A01G482500 chr7B 23443615 23444279 664 True 721.0 721 86.2120 1770 2454 1 chr7B.!!$R1 684
10 TraesCS5A01G482500 chr7B 202992729 202993398 669 True 706.0 706 85.6730 1766 2454 1 chr7B.!!$R2 688
11 TraesCS5A01G482500 chr3A 442773063 442773740 677 False 697.0 697 85.2060 1755 2454 1 chr3A.!!$F1 699
12 TraesCS5A01G482500 chr1A 471474832 471475499 667 True 684.0 684 85.1370 1765 2454 1 chr1A.!!$R1 689
13 TraesCS5A01G482500 chr7A 689414947 689415616 669 True 649.0 649 84.4950 1768 2454 1 chr7A.!!$R2 686
14 TraesCS5A01G482500 chr7A 717275482 717276159 677 False 597.0 597 82.9550 1766 2454 1 chr7A.!!$F1 688
15 TraesCS5A01G482500 chr6A 322055227 322055895 668 False 627.0 627 83.5930 1750 2454 1 chr6A.!!$F1 704
16 TraesCS5A01G482500 chr6A 55928572 55929237 665 True 621.0 621 83.8070 1765 2454 1 chr6A.!!$R1 689
17 TraesCS5A01G482500 chr6B 139358622 139359250 628 True 606.0 606 84.4410 1766 2410 1 chr6B.!!$R1 644
18 TraesCS5A01G482500 chr6B 481854415 481855079 664 True 580.0 580 82.8370 1765 2454 1 chr6B.!!$R2 689
19 TraesCS5A01G482500 chr2B 749857689 749858358 669 False 595.0 595 83.0530 1755 2454 1 chr2B.!!$F2 699
20 TraesCS5A01G482500 chr1B 18391395 18391978 583 True 453.0 453 81.0110 1766 2415 1 chr1B.!!$R1 649


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 1280 0.036294 GGCCAGTTACTGTCCAGGTC 60.036 60.0 7.64 0.0 28.94 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2590 3072 0.105349 TACCCTACCGGCTTAGGCAT 60.105 55.0 11.84 5.72 37.86 4.4 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.445095 CTTGGCCTCGAGATCCTGG 59.555 63.158 15.71 7.80 0.00 4.45
94 95 2.786512 AATGGCCACTCCCAACGCAT 62.787 55.000 8.16 0.00 38.61 4.73
138 139 2.046988 TAGTCGTCGTCGAGGGCA 60.047 61.111 20.34 5.17 46.96 5.36
181 182 2.427812 GTGAGGAACAGGTAGTAGCTCC 59.572 54.545 0.00 0.00 0.00 4.70
456 740 1.905512 GACTATGTCCTTGGCGGGT 59.094 57.895 0.00 0.00 0.00 5.28
599 907 1.064946 CCATCGAGGAGACGCTGAC 59.935 63.158 0.00 0.00 41.22 3.51
799 1134 2.490115 TCCGGGGTTTCGATTTGATTTG 59.510 45.455 0.00 0.00 0.00 2.32
826 1162 4.202151 ACCAAGTGGAGAAAAATGCAGAAC 60.202 41.667 3.83 0.00 38.94 3.01
869 1212 1.303317 CTGGGCTTTTACGTGGGCT 60.303 57.895 0.00 0.00 0.00 5.19
903 1246 1.739667 GAAACAAAGTTGGGCCGCT 59.260 52.632 0.00 0.00 0.00 5.52
931 1274 1.610554 TAGGCCGGCCAGTTACTGTC 61.611 60.000 45.13 16.21 38.92 3.51
933 1276 3.065306 CCGGCCAGTTACTGTCCA 58.935 61.111 13.05 0.00 27.43 4.02
934 1277 1.079127 CCGGCCAGTTACTGTCCAG 60.079 63.158 13.05 5.44 27.43 3.86
935 1278 1.079127 CGGCCAGTTACTGTCCAGG 60.079 63.158 13.05 0.00 27.43 4.45
936 1279 1.827399 CGGCCAGTTACTGTCCAGGT 61.827 60.000 13.05 0.00 27.43 4.00
937 1280 0.036294 GGCCAGTTACTGTCCAGGTC 60.036 60.000 7.64 0.00 28.94 3.85
938 1281 0.389948 GCCAGTTACTGTCCAGGTCG 60.390 60.000 11.68 0.00 0.00 4.79
939 1282 0.246635 CCAGTTACTGTCCAGGTCGG 59.753 60.000 11.68 0.00 0.00 4.79
940 1283 1.254026 CAGTTACTGTCCAGGTCGGA 58.746 55.000 3.88 0.00 43.61 4.55
953 1296 3.429141 TCGGACGTCTGACTCGGC 61.429 66.667 23.11 0.00 35.38 5.54
980 1323 5.338381 CCAACCATCGCTTCCCATATATACT 60.338 44.000 0.00 0.00 0.00 2.12
981 1324 6.173339 CAACCATCGCTTCCCATATATACTT 58.827 40.000 0.00 0.00 0.00 2.24
982 1325 5.978814 ACCATCGCTTCCCATATATACTTC 58.021 41.667 0.00 0.00 0.00 3.01
983 1326 5.721960 ACCATCGCTTCCCATATATACTTCT 59.278 40.000 0.00 0.00 0.00 2.85
987 1330 5.185249 TCGCTTCCCATATATACTTCTCCAC 59.815 44.000 0.00 0.00 0.00 4.02
988 1331 5.411781 GCTTCCCATATATACTTCTCCACG 58.588 45.833 0.00 0.00 0.00 4.94
990 1333 3.767673 TCCCATATATACTTCTCCACGCC 59.232 47.826 0.00 0.00 0.00 5.68
993 1336 4.223032 CCATATATACTTCTCCACGCCCTT 59.777 45.833 0.00 0.00 0.00 3.95
1007 1353 0.615827 GCCCTTCCTGCCAAAAGGAT 60.616 55.000 7.03 0.00 45.84 3.24
1021 1367 0.460987 AAGGATTCGAGCCGAGCAAG 60.461 55.000 1.31 0.00 37.14 4.01
1022 1368 1.884926 GGATTCGAGCCGAGCAAGG 60.885 63.158 0.00 0.00 37.14 3.61
1023 1369 1.884926 GATTCGAGCCGAGCAAGGG 60.885 63.158 0.00 0.00 37.14 3.95
1043 1389 4.980805 GGTCGACGTTGCCAGCCA 62.981 66.667 9.92 0.00 0.00 4.75
1076 1422 2.509336 GCCATGGACACGGACGAG 60.509 66.667 18.40 0.00 0.00 4.18
1112 1458 4.172512 AGGATGCTCCAGCTGCGG 62.173 66.667 8.66 3.87 39.61 5.69
1366 1715 2.384653 GATAAGGACCGGGAGCTGGC 62.385 65.000 6.32 0.00 32.02 4.85
1387 1736 3.197790 CATCCGGCGGCAGAACAG 61.198 66.667 23.83 1.22 0.00 3.16
1602 1951 3.492656 GGTTTTCTGAAGAACCAAAGGCC 60.493 47.826 20.08 0.00 43.75 5.19
1629 1985 4.974645 TGGTCTATCCAGCCGATTATTT 57.025 40.909 0.00 0.00 41.93 1.40
1631 1987 4.346709 TGGTCTATCCAGCCGATTATTTGA 59.653 41.667 0.00 0.00 41.93 2.69
1632 1988 4.691216 GGTCTATCCAGCCGATTATTTGAC 59.309 45.833 0.00 0.00 35.97 3.18
1635 1991 0.944386 CCAGCCGATTATTTGACGGG 59.056 55.000 0.00 0.00 45.66 5.28
1643 1999 5.646606 CCGATTATTTGACGGGTTGATTTT 58.353 37.500 0.00 0.00 42.48 1.82
1646 2002 6.972328 CGATTATTTGACGGGTTGATTTTCAT 59.028 34.615 0.00 0.00 0.00 2.57
1647 2003 7.487829 CGATTATTTGACGGGTTGATTTTCATT 59.512 33.333 0.00 0.00 0.00 2.57
1684 2041 4.537135 TCATACCCTGTTCAAGTCTGAC 57.463 45.455 0.00 0.00 0.00 3.51
1685 2042 4.160329 TCATACCCTGTTCAAGTCTGACT 58.840 43.478 4.06 4.06 0.00 3.41
1688 2045 3.041946 ACCCTGTTCAAGTCTGACTCTT 58.958 45.455 11.31 0.00 0.00 2.85
1697 2054 6.668541 TCAAGTCTGACTCTTTTTGTCTTG 57.331 37.500 11.31 1.79 35.63 3.02
1701 2058 7.721286 AGTCTGACTCTTTTTGTCTTGTATG 57.279 36.000 4.06 0.00 35.63 2.39
1705 2062 9.778741 TCTGACTCTTTTTGTCTTGTATGTAAT 57.221 29.630 0.00 0.00 35.63 1.89
1882 2259 7.901889 CACTATCACTCTCAATTTCGTGAAATG 59.098 37.037 8.49 4.15 40.57 2.32
1890 2267 7.300320 TCTCAATTTCGTGAAATGATGAACAG 58.700 34.615 8.49 0.39 40.57 3.16
1892 2269 7.424803 TCAATTTCGTGAAATGATGAACAGTT 58.575 30.769 8.49 0.00 40.57 3.16
1893 2270 7.920151 TCAATTTCGTGAAATGATGAACAGTTT 59.080 29.630 8.49 0.00 40.57 2.66
1894 2271 8.542132 CAATTTCGTGAAATGATGAACAGTTTT 58.458 29.630 8.49 0.00 40.57 2.43
1895 2272 9.743057 AATTTCGTGAAATGATGAACAGTTTTA 57.257 25.926 8.49 0.00 40.57 1.52
1896 2273 8.781067 TTTCGTGAAATGATGAACAGTTTTAG 57.219 30.769 0.00 0.00 36.92 1.85
1897 2274 7.722795 TCGTGAAATGATGAACAGTTTTAGA 57.277 32.000 0.00 0.00 36.92 2.10
1898 2275 8.148807 TCGTGAAATGATGAACAGTTTTAGAA 57.851 30.769 0.00 0.00 36.92 2.10
1951 2362 9.926158 ACTTGTGCACATATTTGAAATCATAAA 57.074 25.926 22.39 0.00 0.00 1.40
2056 2471 9.897744 TGCAAACATTTTTAAAATTTGTGAACA 57.102 22.222 19.26 13.43 33.78 3.18
2123 2561 3.930848 ACGACGGATGAAAATCTGGTAAC 59.069 43.478 0.00 0.00 0.00 2.50
2288 2755 9.725019 TTTTTGTGAGCGATCTCCATATATAAT 57.275 29.630 0.90 0.00 38.58 1.28
2444 2926 4.831155 TGGCAAGGTAGCTCTATATTACGT 59.169 41.667 0.00 0.00 34.17 3.57
2454 2936 9.171701 GTAGCTCTATATTACGTCAACTGAAAG 57.828 37.037 0.00 0.00 42.29 2.62
2473 2955 7.883391 TGAAAGTTAATACAAAGTTGGGTCA 57.117 32.000 0.00 0.00 0.00 4.02
2474 2956 8.472007 TGAAAGTTAATACAAAGTTGGGTCAT 57.528 30.769 0.00 0.00 0.00 3.06
2475 2957 8.919145 TGAAAGTTAATACAAAGTTGGGTCATT 58.081 29.630 0.00 0.00 0.00 2.57
2476 2958 9.758651 GAAAGTTAATACAAAGTTGGGTCATTT 57.241 29.630 0.00 0.00 0.00 2.32
2487 2969 9.856803 CAAAGTTGGGTCATTTATTTTAAAACG 57.143 29.630 1.97 0.00 0.00 3.60
2488 2970 8.596271 AAGTTGGGTCATTTATTTTAAAACGG 57.404 30.769 1.97 0.00 0.00 4.44
2489 2971 7.156000 AGTTGGGTCATTTATTTTAAAACGGG 58.844 34.615 1.97 0.00 0.00 5.28
2490 2972 6.038997 TGGGTCATTTATTTTAAAACGGGG 57.961 37.500 1.97 0.00 0.00 5.73
2491 2973 5.778750 TGGGTCATTTATTTTAAAACGGGGA 59.221 36.000 1.97 0.00 0.00 4.81
2492 2974 6.071278 TGGGTCATTTATTTTAAAACGGGGAG 60.071 38.462 1.97 0.00 0.00 4.30
2493 2975 6.153170 GGGTCATTTATTTTAAAACGGGGAGA 59.847 38.462 1.97 0.00 0.00 3.71
2494 2976 7.255569 GGTCATTTATTTTAAAACGGGGAGAG 58.744 38.462 1.97 0.00 0.00 3.20
2495 2977 7.094075 GGTCATTTATTTTAAAACGGGGAGAGT 60.094 37.037 1.97 0.00 0.00 3.24
2496 2978 8.301720 GTCATTTATTTTAAAACGGGGAGAGTT 58.698 33.333 1.97 0.00 0.00 3.01
2497 2979 8.301002 TCATTTATTTTAAAACGGGGAGAGTTG 58.699 33.333 1.97 0.00 31.43 3.16
2498 2980 3.994204 TTTTAAAACGGGGAGAGTTGC 57.006 42.857 0.00 0.00 31.43 4.17
2499 2981 2.943036 TTAAAACGGGGAGAGTTGCT 57.057 45.000 0.00 0.00 31.43 3.91
2500 2982 2.467566 TAAAACGGGGAGAGTTGCTC 57.532 50.000 0.00 0.00 43.17 4.26
2501 2983 0.765510 AAAACGGGGAGAGTTGCTCT 59.234 50.000 0.00 0.00 44.28 4.09
2502 2984 1.640917 AAACGGGGAGAGTTGCTCTA 58.359 50.000 0.00 0.00 41.35 2.43
2503 2985 1.867363 AACGGGGAGAGTTGCTCTAT 58.133 50.000 0.00 0.00 41.35 1.98
2504 2986 2.750141 ACGGGGAGAGTTGCTCTATA 57.250 50.000 0.00 0.00 41.35 1.31
2505 2987 3.246416 ACGGGGAGAGTTGCTCTATAT 57.754 47.619 0.00 0.00 41.35 0.86
2506 2988 3.577919 ACGGGGAGAGTTGCTCTATATT 58.422 45.455 0.00 0.00 41.35 1.28
2507 2989 4.737578 ACGGGGAGAGTTGCTCTATATTA 58.262 43.478 0.00 0.00 41.35 0.98
2508 2990 4.523558 ACGGGGAGAGTTGCTCTATATTAC 59.476 45.833 0.00 0.00 41.35 1.89
2509 2991 4.379603 CGGGGAGAGTTGCTCTATATTACG 60.380 50.000 0.00 0.00 41.35 3.18
2510 2992 4.487019 GGGAGAGTTGCTCTATATTACGC 58.513 47.826 0.00 0.00 41.35 4.42
2511 2993 4.487019 GGAGAGTTGCTCTATATTACGCC 58.513 47.826 0.00 0.00 41.35 5.68
2512 2994 4.022242 GGAGAGTTGCTCTATATTACGCCA 60.022 45.833 0.00 0.00 41.35 5.69
2513 2995 5.509163 GGAGAGTTGCTCTATATTACGCCAA 60.509 44.000 0.00 0.00 41.35 4.52
2514 2996 5.290386 AGAGTTGCTCTATATTACGCCAAC 58.710 41.667 0.00 0.00 39.28 3.77
2515 2997 5.069251 AGAGTTGCTCTATATTACGCCAACT 59.931 40.000 0.00 0.00 39.28 3.16
2516 2998 5.050490 AGTTGCTCTATATTACGCCAACTG 58.950 41.667 0.00 0.00 0.00 3.16
2517 2999 4.929819 TGCTCTATATTACGCCAACTGA 57.070 40.909 0.00 0.00 0.00 3.41
2518 3000 5.270893 TGCTCTATATTACGCCAACTGAA 57.729 39.130 0.00 0.00 0.00 3.02
2519 3001 5.666462 TGCTCTATATTACGCCAACTGAAA 58.334 37.500 0.00 0.00 0.00 2.69
2520 3002 6.288294 TGCTCTATATTACGCCAACTGAAAT 58.712 36.000 0.00 0.00 0.00 2.17
2521 3003 6.765989 TGCTCTATATTACGCCAACTGAAATT 59.234 34.615 0.00 0.00 0.00 1.82
2522 3004 7.042051 TGCTCTATATTACGCCAACTGAAATTC 60.042 37.037 0.00 0.00 0.00 2.17
2523 3005 7.042051 GCTCTATATTACGCCAACTGAAATTCA 60.042 37.037 0.00 0.00 0.00 2.57
2524 3006 8.138365 TCTATATTACGCCAACTGAAATTCAC 57.862 34.615 0.00 0.00 0.00 3.18
2525 3007 3.529634 TTACGCCAACTGAAATTCACG 57.470 42.857 0.00 0.00 0.00 4.35
2526 3008 1.588674 ACGCCAACTGAAATTCACGA 58.411 45.000 9.38 0.00 0.00 4.35
2527 3009 1.944024 ACGCCAACTGAAATTCACGAA 59.056 42.857 9.38 0.00 0.00 3.85
2528 3010 2.356382 ACGCCAACTGAAATTCACGAAA 59.644 40.909 9.38 0.00 0.00 3.46
2529 3011 3.181495 ACGCCAACTGAAATTCACGAAAA 60.181 39.130 9.38 0.00 0.00 2.29
2530 3012 3.980775 CGCCAACTGAAATTCACGAAAAT 59.019 39.130 0.00 0.00 0.00 1.82
2531 3013 5.150683 CGCCAACTGAAATTCACGAAAATA 58.849 37.500 0.00 0.00 0.00 1.40
2532 3014 5.627367 CGCCAACTGAAATTCACGAAAATAA 59.373 36.000 0.00 0.00 0.00 1.40
2533 3015 6.183359 CGCCAACTGAAATTCACGAAAATAAG 60.183 38.462 0.00 0.00 0.00 1.73
2534 3016 6.089417 GCCAACTGAAATTCACGAAAATAAGG 59.911 38.462 0.00 0.00 0.00 2.69
2535 3017 6.089417 CCAACTGAAATTCACGAAAATAAGGC 59.911 38.462 0.00 0.00 0.00 4.35
2536 3018 6.575162 ACTGAAATTCACGAAAATAAGGCT 57.425 33.333 0.00 0.00 0.00 4.58
2537 3019 6.381801 ACTGAAATTCACGAAAATAAGGCTG 58.618 36.000 0.00 0.00 0.00 4.85
2538 3020 6.206634 ACTGAAATTCACGAAAATAAGGCTGA 59.793 34.615 0.00 0.00 0.00 4.26
2539 3021 6.976088 TGAAATTCACGAAAATAAGGCTGAA 58.024 32.000 0.00 0.00 0.00 3.02
2540 3022 7.429633 TGAAATTCACGAAAATAAGGCTGAAA 58.570 30.769 0.00 0.00 0.00 2.69
2541 3023 7.923344 TGAAATTCACGAAAATAAGGCTGAAAA 59.077 29.630 0.00 0.00 0.00 2.29
2542 3024 8.655651 AAATTCACGAAAATAAGGCTGAAAAA 57.344 26.923 0.00 0.00 0.00 1.94
2556 3038 4.111967 AAAAATGGGCAGGGTCCG 57.888 55.556 0.00 0.00 0.00 4.79
2557 3039 1.609210 AAAAATGGGCAGGGTCCGG 60.609 57.895 0.00 0.00 0.00 5.14
2558 3040 3.600410 AAAATGGGCAGGGTCCGGG 62.600 63.158 0.00 0.00 0.00 5.73
2563 3045 3.961414 GGCAGGGTCCGGGTTCAA 61.961 66.667 0.00 0.00 0.00 2.69
2564 3046 2.114411 GCAGGGTCCGGGTTCAAA 59.886 61.111 0.00 0.00 0.00 2.69
2565 3047 2.265904 GCAGGGTCCGGGTTCAAAC 61.266 63.158 0.00 0.00 0.00 2.93
2575 3057 3.341263 GGTTCAAACCCAGGTCTCC 57.659 57.895 0.10 0.00 43.43 3.71
2576 3058 0.771755 GGTTCAAACCCAGGTCTCCT 59.228 55.000 0.10 0.00 43.43 3.69
2577 3059 1.982958 GGTTCAAACCCAGGTCTCCTA 59.017 52.381 0.10 0.00 43.43 2.94
2578 3060 2.027100 GGTTCAAACCCAGGTCTCCTAG 60.027 54.545 0.10 0.00 43.43 3.02
2579 3061 2.904434 GTTCAAACCCAGGTCTCCTAGA 59.096 50.000 0.00 0.00 29.64 2.43
2580 3062 3.491766 TCAAACCCAGGTCTCCTAGAT 57.508 47.619 0.00 0.00 29.64 1.98
2581 3063 3.107601 TCAAACCCAGGTCTCCTAGATG 58.892 50.000 0.00 0.00 29.64 2.90
2582 3064 2.171448 CAAACCCAGGTCTCCTAGATGG 59.829 54.545 0.00 0.00 29.64 3.51
2583 3065 1.019650 ACCCAGGTCTCCTAGATGGT 58.980 55.000 0.00 0.00 37.07 3.55
2584 3066 2.224077 ACCCAGGTCTCCTAGATGGTA 58.776 52.381 0.00 0.00 37.07 3.25
2585 3067 2.178106 ACCCAGGTCTCCTAGATGGTAG 59.822 54.545 0.00 0.00 37.07 3.18
2586 3068 2.447429 CCCAGGTCTCCTAGATGGTAGA 59.553 54.545 0.00 0.00 37.07 2.59
2587 3069 3.499563 CCCAGGTCTCCTAGATGGTAGAG 60.500 56.522 0.00 0.00 37.07 2.43
2588 3070 3.396276 CCAGGTCTCCTAGATGGTAGAGA 59.604 52.174 0.00 0.00 37.07 3.10
2589 3071 4.141135 CCAGGTCTCCTAGATGGTAGAGAA 60.141 50.000 0.00 0.00 37.14 2.87
2590 3072 5.450453 CAGGTCTCCTAGATGGTAGAGAAA 58.550 45.833 0.00 0.00 37.14 2.52
2591 3073 6.074648 CAGGTCTCCTAGATGGTAGAGAAAT 58.925 44.000 0.00 0.00 37.14 2.17
2592 3074 6.015519 CAGGTCTCCTAGATGGTAGAGAAATG 60.016 46.154 0.00 0.00 37.14 2.32
2593 3075 5.279256 GGTCTCCTAGATGGTAGAGAAATGC 60.279 48.000 0.00 0.00 37.14 3.56
2594 3076 4.835615 TCTCCTAGATGGTAGAGAAATGCC 59.164 45.833 0.00 0.00 32.58 4.40
2595 3077 4.820775 TCCTAGATGGTAGAGAAATGCCT 58.179 43.478 0.00 0.00 37.07 4.75
2596 3078 5.965486 TCCTAGATGGTAGAGAAATGCCTA 58.035 41.667 0.00 0.00 37.07 3.93
2597 3079 6.382087 TCCTAGATGGTAGAGAAATGCCTAA 58.618 40.000 0.00 0.00 37.07 2.69
2598 3080 6.495181 TCCTAGATGGTAGAGAAATGCCTAAG 59.505 42.308 0.00 0.00 37.07 2.18
2599 3081 4.967036 AGATGGTAGAGAAATGCCTAAGC 58.033 43.478 0.00 0.00 40.48 3.09
2600 3082 3.560636 TGGTAGAGAAATGCCTAAGCC 57.439 47.619 0.00 0.00 38.69 4.35
2601 3083 2.158957 TGGTAGAGAAATGCCTAAGCCG 60.159 50.000 0.00 0.00 38.69 5.52
2602 3084 2.484889 GTAGAGAAATGCCTAAGCCGG 58.515 52.381 0.00 0.00 38.69 6.13
2603 3085 0.912486 AGAGAAATGCCTAAGCCGGT 59.088 50.000 1.90 0.00 38.69 5.28
2604 3086 2.116238 AGAGAAATGCCTAAGCCGGTA 58.884 47.619 1.90 0.00 38.69 4.02
2605 3087 2.103263 AGAGAAATGCCTAAGCCGGTAG 59.897 50.000 1.90 0.00 38.69 3.18
2606 3088 1.141053 AGAAATGCCTAAGCCGGTAGG 59.859 52.381 12.79 12.79 43.23 3.18
2607 3089 0.182775 AAATGCCTAAGCCGGTAGGG 59.817 55.000 17.50 9.70 41.03 3.53
2616 3098 3.942351 GCCGGTAGGGTAGTTTGTT 57.058 52.632 1.90 0.00 38.44 2.83
2617 3099 2.189594 GCCGGTAGGGTAGTTTGTTT 57.810 50.000 1.90 0.00 38.44 2.83
2618 3100 2.507484 GCCGGTAGGGTAGTTTGTTTT 58.493 47.619 1.90 0.00 38.44 2.43
2619 3101 2.485426 GCCGGTAGGGTAGTTTGTTTTC 59.515 50.000 1.90 0.00 38.44 2.29
2620 3102 3.808265 GCCGGTAGGGTAGTTTGTTTTCT 60.808 47.826 1.90 0.00 38.44 2.52
2621 3103 4.392047 CCGGTAGGGTAGTTTGTTTTCTT 58.608 43.478 0.00 0.00 0.00 2.52
2622 3104 4.823442 CCGGTAGGGTAGTTTGTTTTCTTT 59.177 41.667 0.00 0.00 0.00 2.52
2623 3105 5.300034 CCGGTAGGGTAGTTTGTTTTCTTTT 59.700 40.000 0.00 0.00 0.00 2.27
2624 3106 6.203647 CGGTAGGGTAGTTTGTTTTCTTTTG 58.796 40.000 0.00 0.00 0.00 2.44
2625 3107 6.183360 CGGTAGGGTAGTTTGTTTTCTTTTGT 60.183 38.462 0.00 0.00 0.00 2.83
2626 3108 7.549839 GGTAGGGTAGTTTGTTTTCTTTTGTT 58.450 34.615 0.00 0.00 0.00 2.83
2627 3109 7.490079 GGTAGGGTAGTTTGTTTTCTTTTGTTG 59.510 37.037 0.00 0.00 0.00 3.33
2628 3110 6.999950 AGGGTAGTTTGTTTTCTTTTGTTGT 58.000 32.000 0.00 0.00 0.00 3.32
2629 3111 6.871492 AGGGTAGTTTGTTTTCTTTTGTTGTG 59.129 34.615 0.00 0.00 0.00 3.33
2630 3112 6.401688 GGGTAGTTTGTTTTCTTTTGTTGTGC 60.402 38.462 0.00 0.00 0.00 4.57
2631 3113 6.146347 GGTAGTTTGTTTTCTTTTGTTGTGCA 59.854 34.615 0.00 0.00 0.00 4.57
2632 3114 6.610741 AGTTTGTTTTCTTTTGTTGTGCAA 57.389 29.167 0.00 0.00 34.87 4.08
2633 3115 6.657888 AGTTTGTTTTCTTTTGTTGTGCAAG 58.342 32.000 0.00 0.00 38.47 4.01
2634 3116 5.604010 TTGTTTTCTTTTGTTGTGCAAGG 57.396 34.783 0.00 0.00 38.47 3.61
2635 3117 3.999663 TGTTTTCTTTTGTTGTGCAAGGG 59.000 39.130 0.00 0.00 38.47 3.95
2636 3118 2.307934 TTCTTTTGTTGTGCAAGGGC 57.692 45.000 0.00 0.00 38.47 5.19
2649 3131 3.705043 GCAAGGGCATTTCTGTAGATG 57.295 47.619 0.00 0.00 40.72 2.90
2650 3132 3.282021 GCAAGGGCATTTCTGTAGATGA 58.718 45.455 0.00 0.00 40.72 2.92
2651 3133 3.696051 GCAAGGGCATTTCTGTAGATGAA 59.304 43.478 0.00 0.00 40.72 2.57
2652 3134 4.340381 GCAAGGGCATTTCTGTAGATGAAT 59.660 41.667 0.00 0.00 40.72 2.57
2653 3135 5.506982 GCAAGGGCATTTCTGTAGATGAATC 60.507 44.000 0.00 0.00 40.72 2.52
2654 3136 5.378230 AGGGCATTTCTGTAGATGAATCA 57.622 39.130 0.00 0.00 0.00 2.57
2655 3137 5.374921 AGGGCATTTCTGTAGATGAATCAG 58.625 41.667 0.00 0.00 0.00 2.90
2656 3138 5.131642 AGGGCATTTCTGTAGATGAATCAGA 59.868 40.000 0.00 0.00 36.59 3.27
2657 3139 6.002704 GGGCATTTCTGTAGATGAATCAGAT 58.997 40.000 0.00 0.00 37.91 2.90
2658 3140 6.072618 GGGCATTTCTGTAGATGAATCAGATG 60.073 42.308 0.00 0.00 37.91 2.90
2659 3141 6.372185 GCATTTCTGTAGATGAATCAGATGC 58.628 40.000 0.00 0.00 37.19 3.91
2660 3142 6.205076 GCATTTCTGTAGATGAATCAGATGCT 59.795 38.462 10.64 0.00 39.27 3.79
2661 3143 7.387122 GCATTTCTGTAGATGAATCAGATGCTA 59.613 37.037 10.64 0.00 39.27 3.49
2662 3144 9.438228 CATTTCTGTAGATGAATCAGATGCTAT 57.562 33.333 0.00 0.00 37.91 2.97
2663 3145 9.656040 ATTTCTGTAGATGAATCAGATGCTATC 57.344 33.333 0.00 0.00 37.91 2.08
2664 3146 6.850555 TCTGTAGATGAATCAGATGCTATCG 58.149 40.000 0.00 0.00 34.00 2.92
2665 3147 6.656693 TCTGTAGATGAATCAGATGCTATCGA 59.343 38.462 0.00 0.00 34.00 3.59
2666 3148 6.616017 TGTAGATGAATCAGATGCTATCGAC 58.384 40.000 0.00 0.00 0.00 4.20
2667 3149 4.731720 AGATGAATCAGATGCTATCGACG 58.268 43.478 0.00 0.00 0.00 5.12
2668 3150 3.288809 TGAATCAGATGCTATCGACGG 57.711 47.619 0.00 0.00 0.00 4.79
2669 3151 1.989165 GAATCAGATGCTATCGACGGC 59.011 52.381 4.71 4.71 0.00 5.68
2670 3152 0.109551 ATCAGATGCTATCGACGGCG 60.110 55.000 2.87 2.87 39.35 6.46
2671 3153 1.730902 CAGATGCTATCGACGGCGG 60.731 63.158 12.58 0.00 38.28 6.13
2672 3154 3.106407 GATGCTATCGACGGCGGC 61.106 66.667 12.58 7.52 38.28 6.53
2673 3155 3.559657 GATGCTATCGACGGCGGCT 62.560 63.158 12.58 0.15 38.28 5.52
2674 3156 3.151958 ATGCTATCGACGGCGGCTT 62.152 57.895 12.58 1.06 38.28 4.35
2675 3157 1.802337 ATGCTATCGACGGCGGCTTA 61.802 55.000 12.58 0.00 38.28 3.09
2676 3158 1.299620 GCTATCGACGGCGGCTTAA 60.300 57.895 12.58 0.00 38.28 1.85
2677 3159 1.276145 GCTATCGACGGCGGCTTAAG 61.276 60.000 12.58 5.91 38.28 1.85
2678 3160 0.309922 CTATCGACGGCGGCTTAAGA 59.690 55.000 12.58 0.00 38.28 2.10
2679 3161 0.740149 TATCGACGGCGGCTTAAGAA 59.260 50.000 12.58 0.00 38.28 2.52
2680 3162 0.108520 ATCGACGGCGGCTTAAGAAA 60.109 50.000 12.58 0.00 38.28 2.52
2681 3163 0.319727 TCGACGGCGGCTTAAGAAAA 60.320 50.000 12.58 0.00 38.28 2.29
2682 3164 0.513820 CGACGGCGGCTTAAGAAAAA 59.486 50.000 12.58 0.00 0.00 1.94
2714 3196 4.608948 TTTTTCATTTACGGGTGGCATT 57.391 36.364 0.00 0.00 0.00 3.56
2715 3197 3.584406 TTTCATTTACGGGTGGCATTG 57.416 42.857 0.00 0.00 0.00 2.82
2716 3198 2.498644 TCATTTACGGGTGGCATTGA 57.501 45.000 0.00 0.00 0.00 2.57
2717 3199 3.011566 TCATTTACGGGTGGCATTGAT 57.988 42.857 0.00 0.00 0.00 2.57
2718 3200 2.687425 TCATTTACGGGTGGCATTGATG 59.313 45.455 0.00 0.00 0.00 3.07
2719 3201 1.468985 TTTACGGGTGGCATTGATGG 58.531 50.000 0.00 0.00 0.00 3.51
2720 3202 0.395036 TTACGGGTGGCATTGATGGG 60.395 55.000 0.00 0.00 0.00 4.00
2721 3203 1.567208 TACGGGTGGCATTGATGGGT 61.567 55.000 0.00 0.00 0.00 4.51
2722 3204 1.225983 CGGGTGGCATTGATGGGTA 59.774 57.895 0.00 0.00 0.00 3.69
2723 3205 0.395036 CGGGTGGCATTGATGGGTAA 60.395 55.000 0.00 0.00 0.00 2.85
2724 3206 1.753847 CGGGTGGCATTGATGGGTAAT 60.754 52.381 0.00 0.00 0.00 1.89
2725 3207 2.397597 GGGTGGCATTGATGGGTAATT 58.602 47.619 0.00 0.00 0.00 1.40
2726 3208 2.771372 GGGTGGCATTGATGGGTAATTT 59.229 45.455 0.00 0.00 0.00 1.82
2727 3209 3.199727 GGGTGGCATTGATGGGTAATTTT 59.800 43.478 0.00 0.00 0.00 1.82
2728 3210 4.324176 GGGTGGCATTGATGGGTAATTTTT 60.324 41.667 0.00 0.00 0.00 1.94
2729 3211 5.104735 GGGTGGCATTGATGGGTAATTTTTA 60.105 40.000 0.00 0.00 0.00 1.52
2730 3212 5.815222 GGTGGCATTGATGGGTAATTTTTAC 59.185 40.000 0.00 0.00 0.00 2.01
2731 3213 5.815222 GTGGCATTGATGGGTAATTTTTACC 59.185 40.000 7.74 7.74 36.88 2.85
2732 3214 5.485353 TGGCATTGATGGGTAATTTTTACCA 59.515 36.000 16.13 0.03 39.31 3.25
2733 3215 6.013379 TGGCATTGATGGGTAATTTTTACCAA 60.013 34.615 16.13 7.28 39.31 3.67
2734 3216 6.315144 GGCATTGATGGGTAATTTTTACCAAC 59.685 38.462 16.13 8.50 39.31 3.77
2735 3217 7.102993 GCATTGATGGGTAATTTTTACCAACT 58.897 34.615 16.13 2.63 39.31 3.16
2736 3218 7.606073 GCATTGATGGGTAATTTTTACCAACTT 59.394 33.333 16.13 1.35 39.31 2.66
2737 3219 9.500785 CATTGATGGGTAATTTTTACCAACTTT 57.499 29.630 16.13 0.00 39.31 2.66
2738 3220 8.894768 TTGATGGGTAATTTTTACCAACTTTG 57.105 30.769 16.13 0.00 39.31 2.77
2739 3221 8.251383 TGATGGGTAATTTTTACCAACTTTGA 57.749 30.769 16.13 0.00 39.31 2.69
2740 3222 8.705594 TGATGGGTAATTTTTACCAACTTTGAA 58.294 29.630 16.13 0.00 39.31 2.69
2741 3223 9.203421 GATGGGTAATTTTTACCAACTTTGAAG 57.797 33.333 16.13 0.00 39.31 3.02
2742 3224 7.501844 TGGGTAATTTTTACCAACTTTGAAGG 58.498 34.615 16.13 0.00 39.31 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 139 4.194720 GAGGATGACGCCGTCGCT 62.195 66.667 13.18 1.95 39.84 4.93
159 160 3.090037 GAGCTACTACCTGTTCCTCACA 58.910 50.000 0.00 0.00 0.00 3.58
392 676 2.365105 TCCGCTACCCCCTCAAGG 60.365 66.667 0.00 0.00 0.00 3.61
441 725 2.675242 CCCACCCGCCAAGGACATA 61.675 63.158 0.00 0.00 45.00 2.29
490 774 2.564975 CGTCAACGCCTACCTCGT 59.435 61.111 0.00 0.00 42.54 4.18
585 878 4.838486 GCCGTCAGCGTCTCCTCG 62.838 72.222 0.00 0.00 36.15 4.63
799 1134 2.375014 TTTTTCTCCACTTGGTCCCC 57.625 50.000 0.00 0.00 36.34 4.81
931 1274 1.924320 GAGTCAGACGTCCGACCTGG 61.924 65.000 24.68 0.00 40.09 4.45
933 1276 2.033755 CGAGTCAGACGTCCGACCT 61.034 63.158 24.68 14.07 32.33 3.85
934 1277 2.479650 CGAGTCAGACGTCCGACC 59.520 66.667 24.68 16.24 32.33 4.79
935 1278 2.479650 CCGAGTCAGACGTCCGAC 59.520 66.667 21.73 21.73 0.00 4.79
936 1279 3.429141 GCCGAGTCAGACGTCCGA 61.429 66.667 13.01 4.22 0.00 4.55
937 1280 4.477975 GGCCGAGTCAGACGTCCG 62.478 72.222 13.01 8.09 0.00 4.79
938 1281 3.053849 GAGGCCGAGTCAGACGTCC 62.054 68.421 13.01 0.00 0.00 4.79
939 1282 2.486042 GAGGCCGAGTCAGACGTC 59.514 66.667 7.70 7.70 0.00 4.34
940 1283 3.063084 GGAGGCCGAGTCAGACGT 61.063 66.667 0.00 0.00 0.00 4.34
941 1284 2.636412 TTGGAGGCCGAGTCAGACG 61.636 63.158 0.00 0.00 0.00 4.18
942 1285 1.079750 GTTGGAGGCCGAGTCAGAC 60.080 63.158 0.00 0.00 0.00 3.51
943 1286 2.283529 GGTTGGAGGCCGAGTCAGA 61.284 63.158 0.00 0.00 0.00 3.27
944 1287 1.903877 ATGGTTGGAGGCCGAGTCAG 61.904 60.000 0.00 0.00 0.00 3.51
945 1288 1.899437 GATGGTTGGAGGCCGAGTCA 61.899 60.000 0.00 0.00 0.00 3.41
953 1296 1.452108 GGGAAGCGATGGTTGGAGG 60.452 63.158 0.00 0.00 0.00 4.30
954 1297 0.107017 ATGGGAAGCGATGGTTGGAG 60.107 55.000 0.00 0.00 0.00 3.86
980 1323 3.068881 CAGGAAGGGCGTGGAGAA 58.931 61.111 0.00 0.00 0.00 2.87
981 1324 3.706373 GCAGGAAGGGCGTGGAGA 61.706 66.667 0.00 0.00 33.10 3.71
982 1325 4.785453 GGCAGGAAGGGCGTGGAG 62.785 72.222 0.00 0.00 33.10 3.86
987 1330 2.639327 CCTTTTGGCAGGAAGGGCG 61.639 63.158 18.77 0.45 38.98 6.13
988 1331 0.615827 ATCCTTTTGGCAGGAAGGGC 60.616 55.000 23.36 0.00 46.50 5.19
990 1333 1.474077 CGAATCCTTTTGGCAGGAAGG 59.526 52.381 19.89 19.89 46.50 3.46
1007 1353 4.082523 CCCCTTGCTCGGCTCGAA 62.083 66.667 0.00 0.00 34.74 3.71
1027 1373 3.414700 CTGGCTGGCAACGTCGAC 61.415 66.667 5.18 5.18 42.51 4.20
1076 1422 2.281484 TCCAGCACCGCTTGGAAC 60.281 61.111 5.14 0.00 36.40 3.62
1181 1530 2.154427 CTTTTGCGTGGTCGTCGTCC 62.154 60.000 1.17 1.17 39.49 4.79
1193 1542 2.088360 CGCCGATTGTTTTACTTTTGCG 59.912 45.455 0.00 0.00 0.00 4.85
1333 1682 0.946221 CTTATCGGCGAGGACATGGC 60.946 60.000 17.22 0.00 0.00 4.40
1334 1683 0.319900 CCTTATCGGCGAGGACATGG 60.320 60.000 17.22 7.68 34.91 3.66
1336 1685 3.127099 TCCTTATCGGCGAGGACAT 57.873 52.632 17.22 0.00 37.15 3.06
1341 1690 2.335369 CCGGTCCTTATCGGCGAG 59.665 66.667 17.22 0.87 43.81 5.03
1366 1715 4.812476 TCTGCCGCCGGATGTTCG 62.812 66.667 7.68 0.00 0.00 3.95
1441 1790 2.690510 GGAGCTCCCTGCCCTTCT 60.691 66.667 23.19 0.00 44.23 2.85
1591 1940 1.644786 CCATCGTCGGCCTTTGGTTC 61.645 60.000 0.00 0.00 0.00 3.62
1619 1975 2.011222 TCAACCCGTCAAATAATCGGC 58.989 47.619 0.00 0.00 42.48 5.54
1620 1976 4.893424 AATCAACCCGTCAAATAATCGG 57.107 40.909 0.00 0.00 43.30 4.18
1629 1985 4.520874 TGCTAAATGAAAATCAACCCGTCA 59.479 37.500 0.00 0.00 0.00 4.35
1631 1987 5.184864 TCATGCTAAATGAAAATCAACCCGT 59.815 36.000 0.00 0.00 0.00 5.28
1632 1988 5.649557 TCATGCTAAATGAAAATCAACCCG 58.350 37.500 0.00 0.00 0.00 5.28
1647 2003 9.217336 ACAGGGTATGATATATCATCATGCTAA 57.783 33.333 27.58 9.31 43.72 3.09
1761 2118 2.238898 ACGGGCCTTTTTGCTAGTAGAT 59.761 45.455 0.84 0.00 0.00 1.98
1762 2119 1.626825 ACGGGCCTTTTTGCTAGTAGA 59.373 47.619 0.84 0.00 0.00 2.59
1763 2120 1.737793 CACGGGCCTTTTTGCTAGTAG 59.262 52.381 0.84 0.00 0.00 2.57
1808 2166 6.432162 GTGGTCATGGCTATTGATGATTATGT 59.568 38.462 0.00 0.00 31.40 2.29
1816 2174 5.422970 ACAAAATGTGGTCATGGCTATTGAT 59.577 36.000 0.00 0.00 34.19 2.57
1822 2180 2.548493 GCAACAAAATGTGGTCATGGCT 60.548 45.455 0.00 0.00 34.19 4.75
2123 2561 6.149474 ACTCCCTTTCTTTTGTACATCGATTG 59.851 38.462 0.00 0.00 0.00 2.67
2126 2564 5.223449 ACTCCCTTTCTTTTGTACATCGA 57.777 39.130 0.00 0.00 0.00 3.59
2130 2568 7.011669 CGTTTCTTACTCCCTTTCTTTTGTACA 59.988 37.037 0.00 0.00 0.00 2.90
2139 2579 4.448060 CACAGACGTTTCTTACTCCCTTTC 59.552 45.833 0.00 0.00 0.00 2.62
2286 2746 5.963865 ACCCCAACTCCAAATTTAGCATATT 59.036 36.000 0.00 0.00 0.00 1.28
2288 2755 4.941713 ACCCCAACTCCAAATTTAGCATA 58.058 39.130 0.00 0.00 0.00 3.14
2444 2926 8.410141 CCCAACTTTGTATTAACTTTCAGTTGA 58.590 33.333 15.37 0.00 39.11 3.18
2461 2943 9.856803 CGTTTTAAAATAAATGACCCAACTTTG 57.143 29.630 3.52 0.00 0.00 2.77
2462 2944 9.047371 CCGTTTTAAAATAAATGACCCAACTTT 57.953 29.630 3.52 0.00 0.00 2.66
2463 2945 7.658167 CCCGTTTTAAAATAAATGACCCAACTT 59.342 33.333 3.52 0.00 0.00 2.66
2464 2946 7.156000 CCCGTTTTAAAATAAATGACCCAACT 58.844 34.615 3.52 0.00 0.00 3.16
2465 2947 6.369340 CCCCGTTTTAAAATAAATGACCCAAC 59.631 38.462 3.52 0.00 0.00 3.77
2466 2948 6.269307 TCCCCGTTTTAAAATAAATGACCCAA 59.731 34.615 3.52 0.00 0.00 4.12
2467 2949 5.778750 TCCCCGTTTTAAAATAAATGACCCA 59.221 36.000 3.52 0.00 0.00 4.51
2468 2950 6.153170 TCTCCCCGTTTTAAAATAAATGACCC 59.847 38.462 3.52 0.00 0.00 4.46
2469 2951 7.094075 ACTCTCCCCGTTTTAAAATAAATGACC 60.094 37.037 3.52 0.00 0.00 4.02
2470 2952 7.823665 ACTCTCCCCGTTTTAAAATAAATGAC 58.176 34.615 3.52 0.00 0.00 3.06
2471 2953 8.301002 CAACTCTCCCCGTTTTAAAATAAATGA 58.699 33.333 3.52 0.00 0.00 2.57
2472 2954 7.062956 GCAACTCTCCCCGTTTTAAAATAAATG 59.937 37.037 3.52 0.00 0.00 2.32
2473 2955 7.039293 AGCAACTCTCCCCGTTTTAAAATAAAT 60.039 33.333 3.52 0.00 0.00 1.40
2474 2956 6.265876 AGCAACTCTCCCCGTTTTAAAATAAA 59.734 34.615 3.52 0.00 0.00 1.40
2475 2957 5.771165 AGCAACTCTCCCCGTTTTAAAATAA 59.229 36.000 3.52 0.00 0.00 1.40
2476 2958 5.318630 AGCAACTCTCCCCGTTTTAAAATA 58.681 37.500 3.52 0.00 0.00 1.40
2477 2959 4.149598 AGCAACTCTCCCCGTTTTAAAAT 58.850 39.130 3.52 0.00 0.00 1.82
2478 2960 3.558033 AGCAACTCTCCCCGTTTTAAAA 58.442 40.909 0.00 0.00 0.00 1.52
2479 2961 3.143728 GAGCAACTCTCCCCGTTTTAAA 58.856 45.455 0.00 0.00 35.77 1.52
2480 2962 2.370849 AGAGCAACTCTCCCCGTTTTAA 59.629 45.455 0.00 0.00 42.90 1.52
2481 2963 1.975680 AGAGCAACTCTCCCCGTTTTA 59.024 47.619 0.00 0.00 42.90 1.52
2482 2964 0.765510 AGAGCAACTCTCCCCGTTTT 59.234 50.000 0.00 0.00 42.90 2.43
2483 2965 1.640917 TAGAGCAACTCTCCCCGTTT 58.359 50.000 0.00 0.00 40.34 3.60
2484 2966 1.867363 ATAGAGCAACTCTCCCCGTT 58.133 50.000 0.00 0.00 40.34 4.44
2485 2967 2.750141 TATAGAGCAACTCTCCCCGT 57.250 50.000 0.00 0.00 40.34 5.28
2486 2968 4.379603 CGTAATATAGAGCAACTCTCCCCG 60.380 50.000 0.00 0.00 40.34 5.73
2487 2969 4.618693 GCGTAATATAGAGCAACTCTCCCC 60.619 50.000 0.00 0.00 40.34 4.81
2488 2970 4.487019 GCGTAATATAGAGCAACTCTCCC 58.513 47.826 0.00 0.00 40.34 4.30
2489 2971 4.022242 TGGCGTAATATAGAGCAACTCTCC 60.022 45.833 0.00 0.00 40.34 3.71
2490 2972 5.122512 TGGCGTAATATAGAGCAACTCTC 57.877 43.478 0.00 0.00 40.34 3.20
2491 2973 5.069251 AGTTGGCGTAATATAGAGCAACTCT 59.931 40.000 2.23 2.23 43.83 3.24
2492 2974 5.175856 CAGTTGGCGTAATATAGAGCAACTC 59.824 44.000 0.00 0.00 32.79 3.01
2493 2975 5.050490 CAGTTGGCGTAATATAGAGCAACT 58.950 41.667 0.00 0.00 34.16 3.16
2494 2976 5.047847 TCAGTTGGCGTAATATAGAGCAAC 58.952 41.667 0.00 0.00 0.00 4.17
2495 2977 5.270893 TCAGTTGGCGTAATATAGAGCAA 57.729 39.130 0.00 0.00 0.00 3.91
2496 2978 4.929819 TCAGTTGGCGTAATATAGAGCA 57.070 40.909 0.00 0.00 0.00 4.26
2497 2979 6.787085 ATTTCAGTTGGCGTAATATAGAGC 57.213 37.500 0.00 0.00 0.00 4.09
2498 2980 8.276325 GTGAATTTCAGTTGGCGTAATATAGAG 58.724 37.037 0.00 0.00 0.00 2.43
2499 2981 7.042992 CGTGAATTTCAGTTGGCGTAATATAGA 60.043 37.037 0.00 0.00 0.00 1.98
2500 2982 7.042992 TCGTGAATTTCAGTTGGCGTAATATAG 60.043 37.037 0.00 0.00 0.00 1.31
2501 2983 6.757478 TCGTGAATTTCAGTTGGCGTAATATA 59.243 34.615 0.00 0.00 0.00 0.86
2502 2984 5.583061 TCGTGAATTTCAGTTGGCGTAATAT 59.417 36.000 0.00 0.00 0.00 1.28
2503 2985 4.930405 TCGTGAATTTCAGTTGGCGTAATA 59.070 37.500 0.00 0.00 0.00 0.98
2504 2986 3.749088 TCGTGAATTTCAGTTGGCGTAAT 59.251 39.130 0.00 0.00 0.00 1.89
2505 2987 3.132160 TCGTGAATTTCAGTTGGCGTAA 58.868 40.909 0.00 0.00 0.00 3.18
2506 2988 2.756829 TCGTGAATTTCAGTTGGCGTA 58.243 42.857 0.00 0.00 0.00 4.42
2507 2989 1.588674 TCGTGAATTTCAGTTGGCGT 58.411 45.000 0.00 0.00 0.00 5.68
2508 2990 2.679355 TTCGTGAATTTCAGTTGGCG 57.321 45.000 0.00 0.00 0.00 5.69
2509 2991 6.089417 CCTTATTTTCGTGAATTTCAGTTGGC 59.911 38.462 0.00 0.00 0.00 4.52
2510 2992 6.089417 GCCTTATTTTCGTGAATTTCAGTTGG 59.911 38.462 0.00 0.00 0.00 3.77
2511 2993 6.863126 AGCCTTATTTTCGTGAATTTCAGTTG 59.137 34.615 0.00 0.00 0.00 3.16
2512 2994 6.863126 CAGCCTTATTTTCGTGAATTTCAGTT 59.137 34.615 0.00 0.00 0.00 3.16
2513 2995 6.206634 TCAGCCTTATTTTCGTGAATTTCAGT 59.793 34.615 0.00 0.00 0.00 3.41
2514 2996 6.611381 TCAGCCTTATTTTCGTGAATTTCAG 58.389 36.000 0.00 0.00 0.00 3.02
2515 2997 6.567687 TCAGCCTTATTTTCGTGAATTTCA 57.432 33.333 0.00 0.00 0.00 2.69
2516 2998 7.867445 TTTCAGCCTTATTTTCGTGAATTTC 57.133 32.000 0.00 0.00 0.00 2.17
2517 2999 8.655651 TTTTTCAGCCTTATTTTCGTGAATTT 57.344 26.923 0.00 0.00 0.00 1.82
2539 3021 1.609210 CCGGACCCTGCCCATTTTT 60.609 57.895 0.00 0.00 0.00 1.94
2540 3022 2.037208 CCGGACCCTGCCCATTTT 59.963 61.111 0.00 0.00 0.00 1.82
2541 3023 4.060667 CCCGGACCCTGCCCATTT 62.061 66.667 0.73 0.00 0.00 2.32
2546 3028 3.501040 TTTGAACCCGGACCCTGCC 62.501 63.158 0.73 0.00 0.00 4.85
2547 3029 2.114411 TTTGAACCCGGACCCTGC 59.886 61.111 0.73 0.00 0.00 4.85
2548 3030 1.602605 GGTTTGAACCCGGACCCTG 60.603 63.158 0.73 0.00 43.43 4.45
2549 3031 2.841317 GGTTTGAACCCGGACCCT 59.159 61.111 0.73 0.00 43.43 4.34
2557 3039 1.982958 TAGGAGACCTGGGTTTGAACC 59.017 52.381 4.29 4.29 40.71 3.62
2558 3040 2.904434 TCTAGGAGACCTGGGTTTGAAC 59.096 50.000 0.00 0.00 34.61 3.18
2559 3041 3.269592 TCTAGGAGACCTGGGTTTGAA 57.730 47.619 0.00 0.00 34.61 2.69
2560 3042 3.107601 CATCTAGGAGACCTGGGTTTGA 58.892 50.000 0.00 0.00 34.61 2.69
2561 3043 2.171448 CCATCTAGGAGACCTGGGTTTG 59.829 54.545 0.00 0.00 41.22 2.93
2562 3044 2.225908 ACCATCTAGGAGACCTGGGTTT 60.226 50.000 0.00 0.00 41.22 3.27
2563 3045 1.366435 ACCATCTAGGAGACCTGGGTT 59.634 52.381 0.00 0.00 41.22 4.11
2564 3046 1.019650 ACCATCTAGGAGACCTGGGT 58.980 55.000 0.00 0.00 41.22 4.51
2565 3047 2.447429 TCTACCATCTAGGAGACCTGGG 59.553 54.545 0.00 0.00 41.22 4.45
2566 3048 3.396276 TCTCTACCATCTAGGAGACCTGG 59.604 52.174 0.00 0.00 41.22 4.45
2567 3049 4.715534 TCTCTACCATCTAGGAGACCTG 57.284 50.000 0.00 0.00 41.22 4.00
2568 3050 5.735733 TTTCTCTACCATCTAGGAGACCT 57.264 43.478 0.00 0.00 41.22 3.85
2569 3051 5.279256 GCATTTCTCTACCATCTAGGAGACC 60.279 48.000 0.00 0.00 41.22 3.85
2570 3052 5.279256 GGCATTTCTCTACCATCTAGGAGAC 60.279 48.000 0.00 0.00 41.22 3.36
2571 3053 4.835615 GGCATTTCTCTACCATCTAGGAGA 59.164 45.833 0.00 0.00 41.22 3.71
2572 3054 4.837860 AGGCATTTCTCTACCATCTAGGAG 59.162 45.833 0.00 0.00 41.22 3.69
2573 3055 4.820775 AGGCATTTCTCTACCATCTAGGA 58.179 43.478 0.00 0.00 41.22 2.94
2574 3056 6.672266 TTAGGCATTTCTCTACCATCTAGG 57.328 41.667 0.00 0.00 45.67 3.02
2575 3057 6.162777 GCTTAGGCATTTCTCTACCATCTAG 58.837 44.000 0.00 0.00 38.54 2.43
2576 3058 5.012148 GGCTTAGGCATTTCTCTACCATCTA 59.988 44.000 0.00 0.00 40.87 1.98
2577 3059 4.202409 GGCTTAGGCATTTCTCTACCATCT 60.202 45.833 0.00 0.00 40.87 2.90
2578 3060 4.068599 GGCTTAGGCATTTCTCTACCATC 58.931 47.826 0.00 0.00 40.87 3.51
2579 3061 3.495100 CGGCTTAGGCATTTCTCTACCAT 60.495 47.826 6.60 0.00 40.87 3.55
2580 3062 2.158957 CGGCTTAGGCATTTCTCTACCA 60.159 50.000 6.60 0.00 40.87 3.25
2581 3063 2.484889 CGGCTTAGGCATTTCTCTACC 58.515 52.381 6.60 0.00 40.87 3.18
2582 3064 2.158943 ACCGGCTTAGGCATTTCTCTAC 60.159 50.000 0.00 0.00 40.87 2.59
2583 3065 2.116238 ACCGGCTTAGGCATTTCTCTA 58.884 47.619 0.00 0.00 40.87 2.43
2584 3066 0.912486 ACCGGCTTAGGCATTTCTCT 59.088 50.000 0.00 0.00 40.87 3.10
2585 3067 2.484889 CTACCGGCTTAGGCATTTCTC 58.515 52.381 0.00 0.00 40.87 2.87
2586 3068 1.141053 CCTACCGGCTTAGGCATTTCT 59.859 52.381 0.00 0.00 40.87 2.52
2587 3069 1.594331 CCTACCGGCTTAGGCATTTC 58.406 55.000 0.00 0.00 40.87 2.17
2588 3070 0.182775 CCCTACCGGCTTAGGCATTT 59.817 55.000 11.84 0.00 37.86 2.32
2589 3071 0.986550 ACCCTACCGGCTTAGGCATT 60.987 55.000 11.84 0.00 37.86 3.56
2590 3072 0.105349 TACCCTACCGGCTTAGGCAT 60.105 55.000 11.84 5.72 37.86 4.40
2591 3073 0.757935 CTACCCTACCGGCTTAGGCA 60.758 60.000 11.84 2.53 37.86 4.75
2592 3074 0.758310 ACTACCCTACCGGCTTAGGC 60.758 60.000 11.84 0.00 37.86 3.93
2593 3075 1.785647 AACTACCCTACCGGCTTAGG 58.214 55.000 10.58 10.58 38.79 2.69
2594 3076 2.498885 ACAAACTACCCTACCGGCTTAG 59.501 50.000 0.00 0.00 33.26 2.18
2595 3077 2.539302 ACAAACTACCCTACCGGCTTA 58.461 47.619 0.00 0.00 33.26 3.09
2596 3078 1.355112 ACAAACTACCCTACCGGCTT 58.645 50.000 0.00 0.00 33.26 4.35
2597 3079 1.355112 AACAAACTACCCTACCGGCT 58.645 50.000 0.00 0.00 33.26 5.52
2598 3080 2.189594 AAACAAACTACCCTACCGGC 57.810 50.000 0.00 0.00 33.26 6.13
2599 3081 4.011966 AGAAAACAAACTACCCTACCGG 57.988 45.455 0.00 0.00 37.81 5.28
2600 3082 6.183360 ACAAAAGAAAACAAACTACCCTACCG 60.183 38.462 0.00 0.00 0.00 4.02
2601 3083 7.104043 ACAAAAGAAAACAAACTACCCTACC 57.896 36.000 0.00 0.00 0.00 3.18
2602 3084 8.030692 ACAACAAAAGAAAACAAACTACCCTAC 58.969 33.333 0.00 0.00 0.00 3.18
2603 3085 8.030106 CACAACAAAAGAAAACAAACTACCCTA 58.970 33.333 0.00 0.00 0.00 3.53
2604 3086 6.871492 CACAACAAAAGAAAACAAACTACCCT 59.129 34.615 0.00 0.00 0.00 4.34
2605 3087 6.401688 GCACAACAAAAGAAAACAAACTACCC 60.402 38.462 0.00 0.00 0.00 3.69
2606 3088 6.146347 TGCACAACAAAAGAAAACAAACTACC 59.854 34.615 0.00 0.00 0.00 3.18
2607 3089 7.111353 TGCACAACAAAAGAAAACAAACTAC 57.889 32.000 0.00 0.00 0.00 2.73
2608 3090 7.095439 CCTTGCACAACAAAAGAAAACAAACTA 60.095 33.333 0.00 0.00 37.96 2.24
2609 3091 6.293353 CCTTGCACAACAAAAGAAAACAAACT 60.293 34.615 0.00 0.00 37.96 2.66
2610 3092 5.850653 CCTTGCACAACAAAAGAAAACAAAC 59.149 36.000 0.00 0.00 37.96 2.93
2611 3093 5.049129 CCCTTGCACAACAAAAGAAAACAAA 60.049 36.000 0.00 0.00 37.96 2.83
2612 3094 4.453819 CCCTTGCACAACAAAAGAAAACAA 59.546 37.500 0.00 0.00 37.96 2.83
2613 3095 3.999663 CCCTTGCACAACAAAAGAAAACA 59.000 39.130 0.00 0.00 37.96 2.83
2614 3096 3.181511 GCCCTTGCACAACAAAAGAAAAC 60.182 43.478 0.00 0.00 37.96 2.43
2615 3097 3.006247 GCCCTTGCACAACAAAAGAAAA 58.994 40.909 0.00 0.00 37.96 2.29
2616 3098 2.027745 TGCCCTTGCACAACAAAAGAAA 60.028 40.909 0.00 0.00 44.23 2.52
2617 3099 1.552337 TGCCCTTGCACAACAAAAGAA 59.448 42.857 0.00 0.00 44.23 2.52
2618 3100 1.189752 TGCCCTTGCACAACAAAAGA 58.810 45.000 0.00 0.00 44.23 2.52
2619 3101 3.756739 TGCCCTTGCACAACAAAAG 57.243 47.368 0.00 0.00 44.23 2.27
2629 3111 3.282021 TCATCTACAGAAATGCCCTTGC 58.718 45.455 0.00 0.00 38.26 4.01
2630 3112 5.591472 TGATTCATCTACAGAAATGCCCTTG 59.409 40.000 0.00 0.00 0.00 3.61
2631 3113 5.759059 TGATTCATCTACAGAAATGCCCTT 58.241 37.500 0.00 0.00 0.00 3.95
2632 3114 5.131642 TCTGATTCATCTACAGAAATGCCCT 59.868 40.000 0.00 0.00 37.66 5.19
2633 3115 5.371526 TCTGATTCATCTACAGAAATGCCC 58.628 41.667 0.00 0.00 37.66 5.36
2634 3116 6.568081 GCATCTGATTCATCTACAGAAATGCC 60.568 42.308 0.00 0.00 42.55 4.40
2635 3117 6.205076 AGCATCTGATTCATCTACAGAAATGC 59.795 38.462 0.00 0.00 42.19 3.56
2636 3118 7.731882 AGCATCTGATTCATCTACAGAAATG 57.268 36.000 0.00 0.00 42.55 2.32
2637 3119 9.656040 GATAGCATCTGATTCATCTACAGAAAT 57.344 33.333 0.00 0.00 42.55 2.17
2638 3120 7.811713 CGATAGCATCTGATTCATCTACAGAAA 59.188 37.037 0.00 0.00 42.55 2.52
2639 3121 7.175641 TCGATAGCATCTGATTCATCTACAGAA 59.824 37.037 0.00 0.00 42.55 3.02
2640 3122 6.656693 TCGATAGCATCTGATTCATCTACAGA 59.343 38.462 0.00 0.00 43.25 3.41
2641 3123 6.746822 GTCGATAGCATCTGATTCATCTACAG 59.253 42.308 0.00 0.00 0.00 2.74
2642 3124 6.616017 GTCGATAGCATCTGATTCATCTACA 58.384 40.000 0.00 0.00 0.00 2.74
2643 3125 5.736824 CGTCGATAGCATCTGATTCATCTAC 59.263 44.000 0.00 0.00 0.00 2.59
2644 3126 5.163713 CCGTCGATAGCATCTGATTCATCTA 60.164 44.000 0.00 0.00 0.00 1.98
2645 3127 4.380339 CCGTCGATAGCATCTGATTCATCT 60.380 45.833 0.00 0.00 0.00 2.90
2646 3128 3.856521 CCGTCGATAGCATCTGATTCATC 59.143 47.826 0.00 0.00 0.00 2.92
2647 3129 3.842820 CCGTCGATAGCATCTGATTCAT 58.157 45.455 0.00 0.00 0.00 2.57
2648 3130 2.608016 GCCGTCGATAGCATCTGATTCA 60.608 50.000 4.89 0.00 0.00 2.57
2649 3131 1.989165 GCCGTCGATAGCATCTGATTC 59.011 52.381 4.89 0.00 0.00 2.52
2650 3132 1.667177 CGCCGTCGATAGCATCTGATT 60.667 52.381 9.87 0.00 38.10 2.57
2651 3133 0.109551 CGCCGTCGATAGCATCTGAT 60.110 55.000 9.87 0.00 38.10 2.90
2652 3134 1.282875 CGCCGTCGATAGCATCTGA 59.717 57.895 9.87 0.00 38.10 3.27
2653 3135 1.730902 CCGCCGTCGATAGCATCTG 60.731 63.158 9.87 0.00 38.10 2.90
2654 3136 2.645567 CCGCCGTCGATAGCATCT 59.354 61.111 9.87 0.00 38.10 2.90
2655 3137 3.106407 GCCGCCGTCGATAGCATC 61.106 66.667 9.87 0.00 38.10 3.91
2656 3138 1.802337 TAAGCCGCCGTCGATAGCAT 61.802 55.000 9.87 0.00 38.10 3.79
2657 3139 2.007113 TTAAGCCGCCGTCGATAGCA 62.007 55.000 9.87 0.00 38.10 3.49
2658 3140 1.276145 CTTAAGCCGCCGTCGATAGC 61.276 60.000 0.00 0.00 38.10 2.97
2659 3141 0.309922 TCTTAAGCCGCCGTCGATAG 59.690 55.000 0.00 0.00 38.10 2.08
2660 3142 0.740149 TTCTTAAGCCGCCGTCGATA 59.260 50.000 0.00 0.00 38.10 2.92
2661 3143 0.108520 TTTCTTAAGCCGCCGTCGAT 60.109 50.000 0.00 0.00 38.10 3.59
2662 3144 0.319727 TTTTCTTAAGCCGCCGTCGA 60.320 50.000 0.00 0.00 38.10 4.20
2663 3145 0.513820 TTTTTCTTAAGCCGCCGTCG 59.486 50.000 0.00 0.00 0.00 5.12
2693 3175 4.039245 TCAATGCCACCCGTAAATGAAAAA 59.961 37.500 0.00 0.00 0.00 1.94
2694 3176 3.574396 TCAATGCCACCCGTAAATGAAAA 59.426 39.130 0.00 0.00 0.00 2.29
2695 3177 3.157881 TCAATGCCACCCGTAAATGAAA 58.842 40.909 0.00 0.00 0.00 2.69
2696 3178 2.796557 TCAATGCCACCCGTAAATGAA 58.203 42.857 0.00 0.00 0.00 2.57
2697 3179 2.498644 TCAATGCCACCCGTAAATGA 57.501 45.000 0.00 0.00 0.00 2.57
2698 3180 2.223782 CCATCAATGCCACCCGTAAATG 60.224 50.000 0.00 0.00 0.00 2.32
2699 3181 2.031120 CCATCAATGCCACCCGTAAAT 58.969 47.619 0.00 0.00 0.00 1.40
2700 3182 1.468985 CCATCAATGCCACCCGTAAA 58.531 50.000 0.00 0.00 0.00 2.01
2701 3183 0.395036 CCCATCAATGCCACCCGTAA 60.395 55.000 0.00 0.00 0.00 3.18
2702 3184 1.225983 CCCATCAATGCCACCCGTA 59.774 57.895 0.00 0.00 0.00 4.02
2703 3185 1.567208 TACCCATCAATGCCACCCGT 61.567 55.000 0.00 0.00 0.00 5.28
2704 3186 0.395036 TTACCCATCAATGCCACCCG 60.395 55.000 0.00 0.00 0.00 5.28
2705 3187 2.086610 ATTACCCATCAATGCCACCC 57.913 50.000 0.00 0.00 0.00 4.61
2706 3188 4.486125 AAAATTACCCATCAATGCCACC 57.514 40.909 0.00 0.00 0.00 4.61
2707 3189 5.815222 GGTAAAAATTACCCATCAATGCCAC 59.185 40.000 7.88 0.00 0.00 5.01
2708 3190 5.485353 TGGTAAAAATTACCCATCAATGCCA 59.515 36.000 14.88 0.00 36.79 4.92
2709 3191 5.983540 TGGTAAAAATTACCCATCAATGCC 58.016 37.500 14.88 0.00 36.79 4.40
2710 3192 7.102993 AGTTGGTAAAAATTACCCATCAATGC 58.897 34.615 14.88 0.00 36.79 3.56
2711 3193 9.500785 AAAGTTGGTAAAAATTACCCATCAATG 57.499 29.630 14.88 0.00 36.79 2.82
2712 3194 9.500785 CAAAGTTGGTAAAAATTACCCATCAAT 57.499 29.630 14.88 0.00 36.79 2.57
2713 3195 8.705594 TCAAAGTTGGTAAAAATTACCCATCAA 58.294 29.630 14.88 2.26 36.79 2.57
2714 3196 8.251383 TCAAAGTTGGTAAAAATTACCCATCA 57.749 30.769 14.88 0.00 36.79 3.07
2715 3197 9.203421 CTTCAAAGTTGGTAAAAATTACCCATC 57.797 33.333 14.88 6.96 36.79 3.51
2716 3198 8.154203 CCTTCAAAGTTGGTAAAAATTACCCAT 58.846 33.333 14.88 0.86 36.79 4.00
2717 3199 7.501844 CCTTCAAAGTTGGTAAAAATTACCCA 58.498 34.615 14.88 3.34 36.79 4.51
2718 3200 7.956420 CCTTCAAAGTTGGTAAAAATTACCC 57.044 36.000 14.88 2.97 36.79 3.69



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.