Multiple sequence alignment - TraesCS5A01G481400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G481400 chr5A 100.000 4493 0 0 1 4493 653854145 653849653 0.000000e+00 8298.0
1 TraesCS5A01G481400 chr5A 80.335 239 18 19 835 1051 653865834 653865603 2.160000e-33 154.0
2 TraesCS5A01G481400 chr5A 85.246 61 9 0 1396 1456 653038829 653038889 3.750000e-06 63.9
3 TraesCS5A01G481400 chr5D 93.333 2160 86 19 2376 4493 526691135 526688992 0.000000e+00 3138.0
4 TraesCS5A01G481400 chr5D 86.214 1371 109 35 776 2117 526692552 526691233 0.000000e+00 1411.0
5 TraesCS5A01G481400 chr5D 92.872 477 33 1 2 477 526693742 526693266 0.000000e+00 691.0
6 TraesCS5A01G481400 chr5D 88.273 469 50 4 9 473 526719053 526718586 1.410000e-154 556.0
7 TraesCS5A01G481400 chr5D 84.530 181 20 5 3162 3338 526752978 526752802 5.980000e-39 172.0
8 TraesCS5A01G481400 chr5D 95.522 67 2 1 2238 2303 526691188 526691122 6.150000e-19 106.0
9 TraesCS5A01G481400 chr5B 91.985 1597 84 22 2376 3944 662457978 662456398 0.000000e+00 2200.0
10 TraesCS5A01G481400 chr5B 84.783 1426 132 38 726 2117 662459450 662458076 0.000000e+00 1352.0
11 TraesCS5A01G481400 chr5B 96.745 553 12 3 3941 4493 662456277 662455731 0.000000e+00 917.0
12 TraesCS5A01G481400 chr5B 93.220 472 31 1 2 472 662460049 662459578 0.000000e+00 693.0
13 TraesCS5A01G481400 chr5B 90.278 72 6 1 633 704 662459505 662459435 4.790000e-15 93.5
14 TraesCS5A01G481400 chr7A 92.033 364 26 1 1113 1473 30405185 30405548 4.010000e-140 508.0
15 TraesCS5A01G481400 chr7A 86.353 447 47 9 1595 2034 30405630 30406069 4.070000e-130 475.0
16 TraesCS5A01G481400 chr7A 100.000 107 0 0 479 585 671186556 671186450 9.860000e-47 198.0
17 TraesCS5A01G481400 chr7A 97.222 108 3 0 2116 2223 25411110 25411003 2.760000e-42 183.0
18 TraesCS5A01G481400 chr7A 96.364 110 3 1 2113 2222 4213028 4212920 3.570000e-41 180.0
19 TraesCS5A01G481400 chr7A 96.629 89 3 0 2293 2381 467422944 467423032 1.010000e-31 148.0
20 TraesCS5A01G481400 chr7A 95.699 93 2 2 2300 2392 715758524 715758434 1.010000e-31 148.0
21 TraesCS5A01G481400 chr7A 95.604 91 2 2 2300 2389 347285556 347285645 1.300000e-30 145.0
22 TraesCS5A01G481400 chr3A 99.099 111 1 0 476 586 608386701 608386811 2.740000e-47 200.0
23 TraesCS5A01G481400 chr3A 99.083 109 1 0 477 585 683742533 683742425 3.550000e-46 196.0
24 TraesCS5A01G481400 chr3A 99.083 109 1 0 479 587 740110030 740109922 3.550000e-46 196.0
25 TraesCS5A01G481400 chr3A 98.131 107 2 0 2116 2222 399421656 399421550 2.130000e-43 187.0
26 TraesCS5A01G481400 chr3A 92.000 125 7 3 2114 2238 581268030 581267909 5.980000e-39 172.0
27 TraesCS5A01G481400 chr4A 99.091 110 1 0 476 585 738935581 738935472 9.860000e-47 198.0
28 TraesCS5A01G481400 chr3B 99.083 109 1 0 477 585 251325785 251325893 3.550000e-46 196.0
29 TraesCS5A01G481400 chr3B 96.739 92 2 1 2300 2391 175764224 175764134 7.780000e-33 152.0
30 TraesCS5A01G481400 chr3B 95.556 90 4 0 2300 2389 466262553 466262642 1.300000e-30 145.0
31 TraesCS5A01G481400 chr2A 98.214 112 2 0 477 588 565185301 565185190 3.550000e-46 196.0
32 TraesCS5A01G481400 chr2A 95.000 120 4 2 477 596 565200952 565200835 2.130000e-43 187.0
33 TraesCS5A01G481400 chr2A 97.222 108 3 0 2115 2222 674047069 674046962 2.760000e-42 183.0
34 TraesCS5A01G481400 chr2A 97.222 108 3 0 2116 2223 763687569 763687462 2.760000e-42 183.0
35 TraesCS5A01G481400 chr6A 98.198 111 1 1 475 585 8192962 8193071 4.590000e-45 193.0
36 TraesCS5A01G481400 chr6A 83.186 113 16 2 2135 2247 212355048 212355157 2.860000e-17 100.0
37 TraesCS5A01G481400 chr7D 97.222 108 3 0 2116 2223 4020106 4020213 2.760000e-42 183.0
38 TraesCS5A01G481400 chr1A 97.196 107 3 0 2116 2222 366270939 366271045 9.930000e-42 182.0
39 TraesCS5A01G481400 chr1A 93.333 120 7 1 2107 2225 523409116 523408997 4.620000e-40 176.0
40 TraesCS5A01G481400 chr4B 100.000 82 0 0 2300 2381 396686293 396686212 7.780000e-33 152.0
41 TraesCS5A01G481400 chr1B 100.000 82 0 0 2300 2381 671975549 671975468 7.780000e-33 152.0
42 TraesCS5A01G481400 chr2B 96.591 88 1 2 2300 2387 418951775 418951860 1.300000e-30 145.0
43 TraesCS5A01G481400 chr2B 94.681 94 2 3 2300 2391 423830052 423829960 4.690000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G481400 chr5A 653849653 653854145 4492 True 8298.0 8298 100.00000 1 4493 1 chr5A.!!$R1 4492
1 TraesCS5A01G481400 chr5D 526688992 526693742 4750 True 1336.5 3138 91.98525 2 4493 4 chr5D.!!$R3 4491
2 TraesCS5A01G481400 chr5B 662455731 662460049 4318 True 1051.1 2200 91.40220 2 4493 5 chr5B.!!$R1 4491
3 TraesCS5A01G481400 chr7A 30405185 30406069 884 False 491.5 508 89.19300 1113 2034 2 chr7A.!!$F3 921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 1613 0.382158 CGTCTCATCCTTCGCTGCTA 59.618 55.0 0.0 0.0 0.0 3.49 F
2131 2869 0.038744 AGTTACTCCCTCCGTTCCGA 59.961 55.0 0.0 0.0 0.0 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2616 3385 0.037326 TTGCGCTTCCAGACCTACAG 60.037 55.0 9.73 0.0 0.00 2.74 R
3841 4641 0.950116 GAAGGTGCATATGAGCTGCC 59.050 55.0 6.97 0.4 38.89 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.080863 ACAATCTGACAGGAACCATACCTC 60.081 45.833 1.81 0.00 35.35 3.85
154 155 1.653151 GTCCGCCTGTATCAAGGAAC 58.347 55.000 0.00 0.00 40.02 3.62
187 188 2.422093 GGAAATCACTCCATGGACTCCC 60.422 54.545 11.44 1.75 35.36 4.30
189 190 1.050988 ATCACTCCATGGACTCCCGG 61.051 60.000 11.44 2.15 34.29 5.73
226 227 1.081094 TGAGTGATGCGCTGTCATTG 58.919 50.000 16.84 0.00 0.00 2.82
237 238 1.359848 CTGTCATTGTACCTCGGCAC 58.640 55.000 0.00 0.00 0.00 5.01
278 279 2.545532 GGTCTCTGGATCATCTTCTGCG 60.546 54.545 0.00 0.00 0.00 5.18
310 311 5.287674 TCAAGAGGAGCTGGAGAATTATG 57.712 43.478 0.00 0.00 0.00 1.90
403 404 4.283212 ACAAGAGAAGAGCAGTAGAAGCTT 59.717 41.667 0.00 0.00 43.58 3.74
410 411 5.514274 AGAGCAGTAGAAGCTTAGATCAC 57.486 43.478 0.00 0.00 43.58 3.06
413 414 7.004086 AGAGCAGTAGAAGCTTAGATCACTAT 58.996 38.462 0.00 0.00 43.58 2.12
425 426 6.566942 GCTTAGATCACTATAGTCTGTGGTCG 60.567 46.154 1.26 0.00 45.81 4.79
428 429 3.288092 TCACTATAGTCTGTGGTCGCAT 58.712 45.455 1.26 0.00 35.15 4.73
460 462 9.323985 GAGCTTCCATTCCTACATAATATGATC 57.676 37.037 7.33 0.00 0.00 2.92
478 480 8.974292 ATATGATCTGGGGTTGTAATAGTAGT 57.026 34.615 0.00 0.00 0.00 2.73
480 482 7.592885 TGATCTGGGGTTGTAATAGTAGTAC 57.407 40.000 0.76 0.76 0.00 2.73
481 483 7.359849 TGATCTGGGGTTGTAATAGTAGTACT 58.640 38.462 8.14 8.14 0.00 2.73
482 484 8.505246 TGATCTGGGGTTGTAATAGTAGTACTA 58.495 37.037 12.38 12.38 34.82 1.82
483 485 8.703378 ATCTGGGGTTGTAATAGTAGTACTAC 57.297 38.462 23.03 23.03 32.84 2.73
484 486 7.062957 TCTGGGGTTGTAATAGTAGTACTACC 58.937 42.308 25.97 24.25 42.87 3.18
485 487 6.985225 TGGGGTTGTAATAGTAGTACTACCT 58.015 40.000 28.13 16.73 43.04 3.08
486 488 7.062957 TGGGGTTGTAATAGTAGTACTACCTC 58.937 42.308 28.13 26.68 43.84 3.85
487 489 7.091811 TGGGGTTGTAATAGTAGTACTACCTCT 60.092 40.741 28.90 12.86 43.88 3.69
488 490 7.230309 GGGGTTGTAATAGTAGTACTACCTCTG 59.770 44.444 28.13 0.00 41.72 3.35
489 491 7.777440 GGGTTGTAATAGTAGTACTACCTCTGT 59.223 40.741 28.13 12.20 43.04 3.41
490 492 9.183368 GGTTGTAATAGTAGTACTACCTCTGTT 57.817 37.037 25.97 15.79 41.39 3.16
493 495 9.745018 TGTAATAGTAGTACTACCTCTGTTTGT 57.255 33.333 25.97 9.58 36.75 2.83
505 507 8.985805 ACTACCTCTGTTTGTTTTTATAAGACG 58.014 33.333 0.00 0.00 0.00 4.18
506 508 7.797038 ACCTCTGTTTGTTTTTATAAGACGT 57.203 32.000 0.00 0.00 0.00 4.34
507 509 8.217131 ACCTCTGTTTGTTTTTATAAGACGTT 57.783 30.769 0.00 0.00 0.00 3.99
508 510 8.680001 ACCTCTGTTTGTTTTTATAAGACGTTT 58.320 29.630 0.00 0.00 0.00 3.60
509 511 9.511144 CCTCTGTTTGTTTTTATAAGACGTTTT 57.489 29.630 0.00 0.00 0.00 2.43
522 524 9.970395 TTATAAGACGTTTTAGACTTTCAGACA 57.030 29.630 4.75 0.00 0.00 3.41
523 525 6.585389 AAGACGTTTTAGACTTTCAGACAC 57.415 37.500 0.00 0.00 0.00 3.67
524 526 5.903810 AGACGTTTTAGACTTTCAGACACT 58.096 37.500 0.00 0.00 0.00 3.55
525 527 5.749109 AGACGTTTTAGACTTTCAGACACTG 59.251 40.000 0.00 0.00 0.00 3.66
526 528 5.416947 ACGTTTTAGACTTTCAGACACTGT 58.583 37.500 0.00 0.00 32.61 3.55
527 529 5.873164 ACGTTTTAGACTTTCAGACACTGTT 59.127 36.000 0.00 0.00 32.61 3.16
528 530 6.035758 ACGTTTTAGACTTTCAGACACTGTTC 59.964 38.462 0.00 0.00 32.61 3.18
529 531 6.035650 CGTTTTAGACTTTCAGACACTGTTCA 59.964 38.462 0.00 0.00 32.61 3.18
530 532 7.412563 CGTTTTAGACTTTCAGACACTGTTCAA 60.413 37.037 0.00 0.00 32.61 2.69
531 533 7.915293 TTTAGACTTTCAGACACTGTTCAAA 57.085 32.000 0.00 0.00 32.61 2.69
532 534 7.915293 TTAGACTTTCAGACACTGTTCAAAA 57.085 32.000 0.00 0.00 32.61 2.44
533 535 6.817765 AGACTTTCAGACACTGTTCAAAAA 57.182 33.333 0.00 0.00 32.61 1.94
534 536 6.612306 AGACTTTCAGACACTGTTCAAAAAC 58.388 36.000 0.00 0.00 35.85 2.43
535 537 6.206634 AGACTTTCAGACACTGTTCAAAAACA 59.793 34.615 0.00 0.00 43.06 2.83
536 538 6.744112 ACTTTCAGACACTGTTCAAAAACAA 58.256 32.000 0.00 0.00 44.53 2.83
537 539 6.640907 ACTTTCAGACACTGTTCAAAAACAAC 59.359 34.615 0.00 0.00 44.53 3.32
538 540 5.697473 TCAGACACTGTTCAAAAACAACA 57.303 34.783 0.00 0.00 44.53 3.33
539 541 5.457140 TCAGACACTGTTCAAAAACAACAC 58.543 37.500 0.00 0.00 44.53 3.32
540 542 5.009110 TCAGACACTGTTCAAAAACAACACA 59.991 36.000 0.00 0.00 44.53 3.72
541 543 5.689514 CAGACACTGTTCAAAAACAACACAA 59.310 36.000 0.00 0.00 44.53 3.33
542 544 6.199908 CAGACACTGTTCAAAAACAACACAAA 59.800 34.615 0.00 0.00 44.53 2.83
543 545 6.420604 AGACACTGTTCAAAAACAACACAAAG 59.579 34.615 0.00 0.00 44.53 2.77
544 546 5.050431 ACACTGTTCAAAAACAACACAAAGC 60.050 36.000 0.00 0.00 44.53 3.51
545 547 5.050499 CACTGTTCAAAAACAACACAAAGCA 60.050 36.000 0.00 0.00 44.53 3.91
546 548 5.525378 ACTGTTCAAAAACAACACAAAGCAA 59.475 32.000 0.00 0.00 44.53 3.91
547 549 5.983475 TGTTCAAAAACAACACAAAGCAAG 58.017 33.333 0.00 0.00 42.34 4.01
548 550 5.525378 TGTTCAAAAACAACACAAAGCAAGT 59.475 32.000 0.00 0.00 42.34 3.16
549 551 6.037610 TGTTCAAAAACAACACAAAGCAAGTT 59.962 30.769 0.00 0.00 42.34 2.66
550 552 5.983475 TCAAAAACAACACAAAGCAAGTTG 58.017 33.333 0.00 0.00 45.97 3.16
555 557 4.095410 CAACACAAAGCAAGTTGTCTGA 57.905 40.909 4.48 0.00 39.73 3.27
556 558 4.484236 CAACACAAAGCAAGTTGTCTGAA 58.516 39.130 4.48 0.00 39.73 3.02
557 559 4.096732 ACACAAAGCAAGTTGTCTGAAC 57.903 40.909 4.48 0.00 39.73 3.18
558 560 3.100817 CACAAAGCAAGTTGTCTGAACG 58.899 45.455 4.48 0.00 39.73 3.95
559 561 2.747446 ACAAAGCAAGTTGTCTGAACGT 59.253 40.909 4.48 0.00 37.10 3.99
560 562 3.181510 ACAAAGCAAGTTGTCTGAACGTC 60.182 43.478 4.48 0.00 37.10 4.34
561 563 2.604046 AGCAAGTTGTCTGAACGTCT 57.396 45.000 4.48 0.00 0.00 4.18
562 564 2.906354 AGCAAGTTGTCTGAACGTCTT 58.094 42.857 4.48 0.00 0.00 3.01
563 565 4.054780 AGCAAGTTGTCTGAACGTCTTA 57.945 40.909 4.48 0.00 0.00 2.10
564 566 4.632153 AGCAAGTTGTCTGAACGTCTTAT 58.368 39.130 4.48 0.00 0.00 1.73
565 567 5.779922 AGCAAGTTGTCTGAACGTCTTATA 58.220 37.500 4.48 0.00 0.00 0.98
566 568 6.220930 AGCAAGTTGTCTGAACGTCTTATAA 58.779 36.000 4.48 0.00 0.00 0.98
567 569 6.704493 AGCAAGTTGTCTGAACGTCTTATAAA 59.296 34.615 4.48 0.00 0.00 1.40
568 570 7.225931 AGCAAGTTGTCTGAACGTCTTATAAAA 59.774 33.333 4.48 0.00 0.00 1.52
569 571 7.853929 GCAAGTTGTCTGAACGTCTTATAAAAA 59.146 33.333 4.48 0.00 0.00 1.94
570 572 9.155053 CAAGTTGTCTGAACGTCTTATAAAAAC 57.845 33.333 0.00 0.00 0.00 2.43
571 573 8.428186 AGTTGTCTGAACGTCTTATAAAAACA 57.572 30.769 0.00 0.00 0.00 2.83
572 574 8.885722 AGTTGTCTGAACGTCTTATAAAAACAA 58.114 29.630 0.00 0.00 0.00 2.83
573 575 9.493206 GTTGTCTGAACGTCTTATAAAAACAAA 57.507 29.630 0.00 0.00 0.00 2.83
574 576 9.493206 TTGTCTGAACGTCTTATAAAAACAAAC 57.507 29.630 0.00 0.00 0.00 2.93
575 577 7.847078 TGTCTGAACGTCTTATAAAAACAAACG 59.153 33.333 0.00 0.00 35.00 3.60
576 578 7.319615 GTCTGAACGTCTTATAAAAACAAACGG 59.680 37.037 0.00 0.00 33.26 4.44
577 579 7.224362 TCTGAACGTCTTATAAAAACAAACGGA 59.776 33.333 0.00 0.00 33.26 4.69
578 580 7.346695 TGAACGTCTTATAAAAACAAACGGAG 58.653 34.615 0.00 0.00 33.26 4.63
579 581 6.232139 ACGTCTTATAAAAACAAACGGAGG 57.768 37.500 0.00 0.00 33.26 4.30
580 582 5.179929 ACGTCTTATAAAAACAAACGGAGGG 59.820 40.000 0.00 0.00 33.26 4.30
588 590 6.474140 AAAAACAAACGGAGGGAGTATTTT 57.526 33.333 0.00 0.00 0.00 1.82
591 593 5.231702 ACAAACGGAGGGAGTATTTTACA 57.768 39.130 0.00 0.00 0.00 2.41
603 605 6.183360 GGGAGTATTTTACATTTCTTGTCCGG 60.183 42.308 0.00 0.00 39.87 5.14
607 609 5.838531 TTTTACATTTCTTGTCCGGTGTT 57.161 34.783 0.00 0.00 39.87 3.32
612 614 3.907894 TTTCTTGTCCGGTGTTAATGC 57.092 42.857 0.00 0.00 0.00 3.56
613 615 2.851263 TCTTGTCCGGTGTTAATGCT 57.149 45.000 0.00 0.00 0.00 3.79
614 616 2.695359 TCTTGTCCGGTGTTAATGCTC 58.305 47.619 0.00 0.00 0.00 4.26
616 618 2.851263 TGTCCGGTGTTAATGCTCTT 57.149 45.000 0.00 0.00 0.00 2.85
617 619 2.695359 TGTCCGGTGTTAATGCTCTTC 58.305 47.619 0.00 0.00 0.00 2.87
618 620 2.301870 TGTCCGGTGTTAATGCTCTTCT 59.698 45.455 0.00 0.00 0.00 2.85
625 652 4.378459 GGTGTTAATGCTCTTCTTTCGGTG 60.378 45.833 0.00 0.00 0.00 4.94
635 662 5.661458 CTCTTCTTTCGGTGTGTATGGTAT 58.339 41.667 0.00 0.00 0.00 2.73
636 663 5.416083 TCTTCTTTCGGTGTGTATGGTATG 58.584 41.667 0.00 0.00 0.00 2.39
637 664 4.811969 TCTTTCGGTGTGTATGGTATGT 57.188 40.909 0.00 0.00 0.00 2.29
638 665 5.918426 TCTTTCGGTGTGTATGGTATGTA 57.082 39.130 0.00 0.00 0.00 2.29
640 667 6.699366 TCTTTCGGTGTGTATGGTATGTAAA 58.301 36.000 0.00 0.00 0.00 2.01
641 668 7.160049 TCTTTCGGTGTGTATGGTATGTAAAA 58.840 34.615 0.00 0.00 0.00 1.52
642 669 6.724694 TTCGGTGTGTATGGTATGTAAAAC 57.275 37.500 0.00 0.00 0.00 2.43
643 670 5.177326 TCGGTGTGTATGGTATGTAAAACC 58.823 41.667 0.00 0.00 37.53 3.27
702 729 9.453572 ACATGTGTAATGAATGAGTAAAGATGT 57.546 29.630 0.00 0.00 25.00 3.06
748 775 7.278646 TGGAACGAATAAAGATGTTGATCTCTG 59.721 37.037 0.00 0.00 38.03 3.35
794 1469 2.045340 GGGAAAGGCGCCTTGCTA 60.045 61.111 39.54 0.00 45.43 3.49
795 1470 1.677633 GGGAAAGGCGCCTTGCTAA 60.678 57.895 39.54 0.00 45.43 3.09
904 1590 5.440234 TCTAGACAAATCCAGAGTATCGC 57.560 43.478 0.00 0.00 42.67 4.58
923 1609 1.429825 CGTCGTCTCATCCTTCGCT 59.570 57.895 0.00 0.00 0.00 4.93
927 1613 0.382158 CGTCTCATCCTTCGCTGCTA 59.618 55.000 0.00 0.00 0.00 3.49
937 1623 0.448197 TTCGCTGCTACTCTCGTGAG 59.552 55.000 12.77 12.77 45.43 3.51
942 1628 2.159310 GCTGCTACTCTCGTGAGACATT 60.159 50.000 20.64 1.28 42.73 2.71
954 1640 1.350684 TGAGACATTGGCACTTGGCTA 59.649 47.619 5.02 0.00 44.01 3.93
960 1654 2.820037 GGCACTTGGCTACGCTCC 60.820 66.667 0.00 0.00 44.01 4.70
990 1694 4.845580 CAGCTAGCCCGCCACCAG 62.846 72.222 12.13 0.00 0.00 4.00
1098 1807 1.670083 CTCCGACCAAAACCCGACC 60.670 63.158 0.00 0.00 0.00 4.79
1102 1811 0.955905 CGACCAAAACCCGACCAATT 59.044 50.000 0.00 0.00 0.00 2.32
1150 1859 1.215655 GCGACAGCGTCACAAGAACT 61.216 55.000 8.91 0.00 40.36 3.01
1157 1866 1.230635 CGTCACAAGAACTGCCCCTG 61.231 60.000 0.00 0.00 0.00 4.45
1159 1868 1.067295 TCACAAGAACTGCCCCTGAT 58.933 50.000 0.00 0.00 0.00 2.90
1259 1971 1.446966 GTCGGAGGAGAGCAAGCAC 60.447 63.158 0.00 0.00 0.00 4.40
1265 1977 2.169352 GGAGGAGAGCAAGCACAAGATA 59.831 50.000 0.00 0.00 0.00 1.98
1310 2022 2.501610 GACATCAGGGAGGCGGAC 59.498 66.667 0.00 0.00 0.00 4.79
1382 2094 1.284841 CCTCCCCCAAGATGAAGCCT 61.285 60.000 0.00 0.00 0.00 4.58
1460 2172 0.895559 CTGAGCAGGTTGGGTTTCCC 60.896 60.000 0.00 0.00 45.71 3.97
1474 2186 4.600111 TGGGTTTCCCTTTCTGTACTGTAT 59.400 41.667 6.38 0.00 45.70 2.29
1476 2188 5.646793 GGGTTTCCCTTTCTGTACTGTATTC 59.353 44.000 0.00 0.00 41.34 1.75
1480 2193 3.195661 CCTTTCTGTACTGTATTCGCCC 58.804 50.000 0.00 0.00 0.00 6.13
1482 2195 2.154567 TCTGTACTGTATTCGCCCCT 57.845 50.000 0.00 0.00 0.00 4.79
1483 2196 2.029623 TCTGTACTGTATTCGCCCCTC 58.970 52.381 0.00 0.00 0.00 4.30
1495 2208 0.749454 CGCCCCTCTTTGGATTCAGG 60.749 60.000 0.00 0.00 38.35 3.86
1496 2209 0.332972 GCCCCTCTTTGGATTCAGGT 59.667 55.000 0.00 0.00 38.35 4.00
1499 2212 1.821136 CCCTCTTTGGATTCAGGTTGC 59.179 52.381 0.00 0.00 38.35 4.17
1513 2226 4.713735 TTGCGCCGCTCCCATCAA 62.714 61.111 11.67 0.00 0.00 2.57
1526 2241 2.158623 TCCCATCAAGCACAGTTTCAGT 60.159 45.455 0.00 0.00 0.00 3.41
1529 2244 5.045942 TCCCATCAAGCACAGTTTCAGTATA 60.046 40.000 0.00 0.00 0.00 1.47
1533 2248 4.329801 TCAAGCACAGTTTCAGTATATGCG 59.670 41.667 0.00 0.00 36.71 4.73
1535 2250 3.618594 AGCACAGTTTCAGTATATGCGTG 59.381 43.478 0.00 0.00 36.71 5.34
1544 2259 4.421058 TCAGTATATGCGTGTTCTGTGTC 58.579 43.478 8.72 0.00 0.00 3.67
1548 2263 2.238942 ATGCGTGTTCTGTGTCTCAA 57.761 45.000 0.00 0.00 0.00 3.02
1567 2287 7.044181 GTCTCAATGACATATCCTGAAACTCA 58.956 38.462 0.00 0.00 44.73 3.41
1574 2294 7.907389 TGACATATCCTGAAACTCAACTTAGT 58.093 34.615 0.00 0.00 0.00 2.24
1576 2296 7.331791 ACATATCCTGAAACTCAACTTAGTCC 58.668 38.462 0.00 0.00 0.00 3.85
1578 2298 5.623956 TCCTGAAACTCAACTTAGTCCAA 57.376 39.130 0.00 0.00 0.00 3.53
1579 2299 5.611374 TCCTGAAACTCAACTTAGTCCAAG 58.389 41.667 0.00 0.00 40.38 3.61
1590 2310 4.436079 ACTTAGTCCAAGTCCTTATGGGT 58.564 43.478 0.00 0.00 44.48 4.51
1591 2311 4.850386 ACTTAGTCCAAGTCCTTATGGGTT 59.150 41.667 0.00 0.00 44.48 4.11
1593 2313 6.156429 ACTTAGTCCAAGTCCTTATGGGTTAG 59.844 42.308 0.00 0.00 44.48 2.34
1599 2330 8.657712 GTCCAAGTCCTTATGGGTTAGTATTAT 58.342 37.037 0.00 0.00 37.31 1.28
1647 2378 1.106285 GTCAGGTGGATTGGATTGGC 58.894 55.000 0.00 0.00 0.00 4.52
1710 2441 7.920151 TGGTTCTGCATTTTATATGTGCATAAC 59.080 33.333 17.73 17.73 46.52 1.89
1724 2455 6.925610 TGTGCATAACTTTATCTGGATGTC 57.074 37.500 0.00 0.00 0.00 3.06
1731 2462 8.607459 CATAACTTTATCTGGATGTCTGTTGAC 58.393 37.037 0.00 0.00 43.20 3.18
1822 2553 0.676782 CGAATCCCAACCACCCACTC 60.677 60.000 0.00 0.00 0.00 3.51
1827 2558 0.396417 CCCAACCACCCACTCAACAA 60.396 55.000 0.00 0.00 0.00 2.83
1843 2574 0.106521 ACAACCTTGGCAATGGCAAC 59.893 50.000 18.49 0.00 42.98 4.17
1860 2591 5.001232 TGGCAACATACTGGTAAGTTCTTC 58.999 41.667 0.00 0.00 46.17 2.87
1886 2617 6.678164 GCGATGAGTCTATAAGTCTGTTCACA 60.678 42.308 0.00 0.00 0.00 3.58
1891 2622 9.856488 TGAGTCTATAAGTCTGTTCACATTTAC 57.144 33.333 0.00 0.00 0.00 2.01
1931 2666 7.436118 TCAATTGCTCTAGCTTTCACAAAAAT 58.564 30.769 0.00 0.00 42.66 1.82
1937 2675 8.076178 TGCTCTAGCTTTCACAAAAATCTTTAC 58.924 33.333 3.26 0.00 42.66 2.01
1943 2681 8.568794 AGCTTTCACAAAAATCTTTACTACCTC 58.431 33.333 0.00 0.00 0.00 3.85
1956 2694 1.471684 ACTACCTCGAACGCCTTAGTG 59.528 52.381 0.00 0.00 0.00 2.74
1989 2727 1.001706 CATTGATTGGCGGCAGATGAG 60.002 52.381 12.87 0.00 0.00 2.90
1990 2728 0.252761 TTGATTGGCGGCAGATGAGA 59.747 50.000 12.87 0.00 0.00 3.27
1991 2729 0.471191 TGATTGGCGGCAGATGAGAT 59.529 50.000 12.87 0.66 0.00 2.75
1992 2730 0.873054 GATTGGCGGCAGATGAGATG 59.127 55.000 12.87 0.00 0.00 2.90
1993 2731 0.471191 ATTGGCGGCAGATGAGATGA 59.529 50.000 12.87 0.00 0.00 2.92
1998 2736 0.600518 CGGCAGATGAGATGAGCCAG 60.601 60.000 0.00 0.00 45.47 4.85
2002 2740 0.107081 AGATGAGATGAGCCAGCTGC 59.893 55.000 8.66 3.91 41.71 5.25
2050 2788 6.258230 TCACAGAAATGTTCAATTGCTAGG 57.742 37.500 0.00 0.00 0.00 3.02
2085 2823 2.427453 ACTACTGACAGGTTCGCCATAG 59.573 50.000 7.51 0.00 40.60 2.23
2120 2858 7.493743 TCGATAGATGTCTAACAGTTACTCC 57.506 40.000 0.00 0.00 42.67 3.85
2121 2859 6.485984 TCGATAGATGTCTAACAGTTACTCCC 59.514 42.308 0.00 0.00 42.67 4.30
2122 2860 6.487331 CGATAGATGTCTAACAGTTACTCCCT 59.513 42.308 0.00 0.00 39.76 4.20
2123 2861 7.308109 CGATAGATGTCTAACAGTTACTCCCTC 60.308 44.444 0.00 0.00 39.76 4.30
2124 2862 4.957327 AGATGTCTAACAGTTACTCCCTCC 59.043 45.833 0.00 0.00 0.00 4.30
2125 2863 3.087031 TGTCTAACAGTTACTCCCTCCG 58.913 50.000 0.00 0.00 0.00 4.63
2126 2864 3.087781 GTCTAACAGTTACTCCCTCCGT 58.912 50.000 0.00 0.00 0.00 4.69
2127 2865 3.509184 GTCTAACAGTTACTCCCTCCGTT 59.491 47.826 0.00 0.00 0.00 4.44
2128 2866 3.760684 TCTAACAGTTACTCCCTCCGTTC 59.239 47.826 0.00 0.00 0.00 3.95
2129 2867 1.264295 ACAGTTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
2130 2868 0.172803 CAGTTACTCCCTCCGTTCCG 59.827 60.000 0.00 0.00 0.00 4.30
2131 2869 0.038744 AGTTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
2132 2870 0.890683 GTTACTCCCTCCGTTCCGAA 59.109 55.000 0.00 0.00 0.00 4.30
2133 2871 1.479730 GTTACTCCCTCCGTTCCGAAT 59.520 52.381 0.00 0.00 0.00 3.34
2134 2872 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
2135 2873 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
2136 2874 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
2137 2875 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
2138 2876 1.753073 TCCCTCCGTTCCGAATTACTC 59.247 52.381 0.00 0.00 0.00 2.59
2140 2878 1.133790 CCTCCGTTCCGAATTACTCGT 59.866 52.381 0.00 0.00 46.65 4.18
2141 2879 2.448219 CTCCGTTCCGAATTACTCGTC 58.552 52.381 0.00 0.00 46.65 4.20
2142 2880 1.811965 TCCGTTCCGAATTACTCGTCA 59.188 47.619 0.00 0.00 46.65 4.35
2143 2881 1.916000 CCGTTCCGAATTACTCGTCAC 59.084 52.381 0.00 0.00 46.65 3.67
2144 2882 2.587956 CGTTCCGAATTACTCGTCACA 58.412 47.619 0.00 0.00 46.65 3.58
2145 2883 2.592897 CGTTCCGAATTACTCGTCACAG 59.407 50.000 0.00 0.00 46.65 3.66
2146 2884 3.668757 CGTTCCGAATTACTCGTCACAGA 60.669 47.826 0.00 0.00 46.65 3.41
2147 2885 4.232221 GTTCCGAATTACTCGTCACAGAA 58.768 43.478 0.00 0.00 46.65 3.02
2148 2886 4.508461 TCCGAATTACTCGTCACAGAAA 57.492 40.909 0.00 0.00 46.65 2.52
2149 2887 5.068234 TCCGAATTACTCGTCACAGAAAT 57.932 39.130 0.00 0.00 46.65 2.17
2150 2888 4.862574 TCCGAATTACTCGTCACAGAAATG 59.137 41.667 0.00 0.00 46.65 2.32
2151 2889 4.862574 CCGAATTACTCGTCACAGAAATGA 59.137 41.667 0.00 0.00 46.65 2.57
2152 2890 5.347635 CCGAATTACTCGTCACAGAAATGAA 59.652 40.000 0.00 0.00 46.65 2.57
2153 2891 6.036083 CCGAATTACTCGTCACAGAAATGAAT 59.964 38.462 0.00 0.00 46.65 2.57
2154 2892 6.896613 CGAATTACTCGTCACAGAAATGAATG 59.103 38.462 0.00 0.00 42.89 2.67
2155 2893 7.411912 CGAATTACTCGTCACAGAAATGAATGT 60.412 37.037 0.00 0.00 42.89 2.71
2156 2894 8.771920 AATTACTCGTCACAGAAATGAATGTA 57.228 30.769 0.00 0.00 0.00 2.29
2157 2895 8.948631 ATTACTCGTCACAGAAATGAATGTAT 57.051 30.769 0.00 0.00 0.00 2.29
2158 2896 6.893958 ACTCGTCACAGAAATGAATGTATC 57.106 37.500 0.00 0.00 0.00 2.24
2159 2897 6.634805 ACTCGTCACAGAAATGAATGTATCT 58.365 36.000 0.00 0.00 0.00 1.98
2160 2898 7.772166 ACTCGTCACAGAAATGAATGTATCTA 58.228 34.615 0.00 0.00 0.00 1.98
2161 2899 7.918033 ACTCGTCACAGAAATGAATGTATCTAG 59.082 37.037 0.00 0.00 0.00 2.43
2162 2900 7.996385 TCGTCACAGAAATGAATGTATCTAGA 58.004 34.615 0.00 0.00 0.00 2.43
2163 2901 8.633561 TCGTCACAGAAATGAATGTATCTAGAT 58.366 33.333 10.73 10.73 0.00 1.98
2164 2902 8.697960 CGTCACAGAAATGAATGTATCTAGATG 58.302 37.037 15.79 0.00 0.00 2.90
2165 2903 9.539825 GTCACAGAAATGAATGTATCTAGATGT 57.460 33.333 15.79 0.00 0.00 3.06
2194 2932 6.588719 AGTTCTAGATACATCCATCTCTGC 57.411 41.667 0.00 0.00 36.63 4.26
2195 2933 5.182950 AGTTCTAGATACATCCATCTCTGCG 59.817 44.000 0.00 0.00 36.63 5.18
2196 2934 4.911390 TCTAGATACATCCATCTCTGCGA 58.089 43.478 0.00 0.00 36.63 5.10
2197 2935 3.932545 AGATACATCCATCTCTGCGAC 57.067 47.619 0.00 0.00 28.83 5.19
2198 2936 2.227626 AGATACATCCATCTCTGCGACG 59.772 50.000 0.00 0.00 28.83 5.12
2199 2937 1.675552 TACATCCATCTCTGCGACGA 58.324 50.000 0.00 0.00 0.00 4.20
2200 2938 0.383590 ACATCCATCTCTGCGACGAG 59.616 55.000 0.00 0.00 0.00 4.18
2201 2939 0.383590 CATCCATCTCTGCGACGAGT 59.616 55.000 0.00 0.00 32.83 4.18
2202 2940 1.604278 CATCCATCTCTGCGACGAGTA 59.396 52.381 0.00 0.00 32.83 2.59
2203 2941 1.746470 TCCATCTCTGCGACGAGTAA 58.254 50.000 0.00 0.00 32.83 2.24
2204 2942 2.298610 TCCATCTCTGCGACGAGTAAT 58.701 47.619 0.00 0.00 32.83 1.89
2205 2943 2.688446 TCCATCTCTGCGACGAGTAATT 59.312 45.455 0.00 0.00 32.83 1.40
2206 2944 3.130516 TCCATCTCTGCGACGAGTAATTT 59.869 43.478 0.00 0.00 32.83 1.82
2207 2945 3.243877 CCATCTCTGCGACGAGTAATTTG 59.756 47.826 0.00 0.00 32.83 2.32
2208 2946 2.876091 TCTCTGCGACGAGTAATTTGG 58.124 47.619 0.00 0.00 32.83 3.28
2209 2947 2.490509 TCTCTGCGACGAGTAATTTGGA 59.509 45.455 0.00 0.00 32.83 3.53
2210 2948 3.057104 TCTCTGCGACGAGTAATTTGGAA 60.057 43.478 0.00 0.00 32.83 3.53
2211 2949 2.991190 TCTGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2212 2950 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2213 2951 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
2214 2952 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2215 2953 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2216 2954 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2217 2955 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2218 2956 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2219 2957 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2281 3049 9.709495 TTAAGTTCCTGTCGTAGCTAAAATTTA 57.291 29.630 0.00 0.00 0.00 1.40
2286 3054 7.609056 TCCTGTCGTAGCTAAAATTTAGAAGT 58.391 34.615 16.22 3.05 0.00 3.01
2287 3055 8.092687 TCCTGTCGTAGCTAAAATTTAGAAGTT 58.907 33.333 16.22 1.83 0.00 2.66
2288 3056 8.381387 CCTGTCGTAGCTAAAATTTAGAAGTTC 58.619 37.037 16.22 0.00 0.00 3.01
2289 3057 9.141400 CTGTCGTAGCTAAAATTTAGAAGTTCT 57.859 33.333 16.22 10.87 0.00 3.01
2290 3058 8.922676 TGTCGTAGCTAAAATTTAGAAGTTCTG 58.077 33.333 15.90 0.00 0.00 3.02
2291 3059 8.923683 GTCGTAGCTAAAATTTAGAAGTTCTGT 58.076 33.333 15.90 0.00 0.00 3.41
2307 3075 9.569122 AGAAGTTCTGTATTCTCTCTATAGACC 57.431 37.037 4.10 0.00 29.80 3.85
2308 3076 8.700439 AAGTTCTGTATTCTCTCTATAGACCC 57.300 38.462 0.00 0.00 0.00 4.46
2309 3077 7.817440 AGTTCTGTATTCTCTCTATAGACCCA 58.183 38.462 0.00 0.00 0.00 4.51
2310 3078 8.282982 AGTTCTGTATTCTCTCTATAGACCCAA 58.717 37.037 0.00 0.00 0.00 4.12
2311 3079 8.915036 GTTCTGTATTCTCTCTATAGACCCAAA 58.085 37.037 0.00 0.00 0.00 3.28
2312 3080 8.698973 TCTGTATTCTCTCTATAGACCCAAAG 57.301 38.462 0.00 0.00 0.00 2.77
2313 3081 8.282982 TCTGTATTCTCTCTATAGACCCAAAGT 58.717 37.037 0.00 0.00 0.00 2.66
2314 3082 8.239038 TGTATTCTCTCTATAGACCCAAAGTG 57.761 38.462 0.00 0.00 0.00 3.16
2315 3083 6.739331 ATTCTCTCTATAGACCCAAAGTGG 57.261 41.667 0.00 0.00 37.25 4.00
2316 3084 5.208294 TCTCTCTATAGACCCAAAGTGGT 57.792 43.478 0.00 0.00 42.79 4.16
2321 3089 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2322 3090 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2323 3091 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2324 3092 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2325 3093 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
2326 3094 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2327 3095 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
2328 3096 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
2329 3097 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
2330 3098 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
2331 3099 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
2332 3100 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
2333 3101 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
2334 3102 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
2335 3103 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
2336 3104 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
2337 3105 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2338 3106 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2339 3107 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2340 3108 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2365 3133 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2366 3134 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2367 3135 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2368 3136 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2369 3137 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2370 3138 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2371 3139 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2374 3142 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
2406 3174 4.464008 TCTATTGGCCTGGAATGTTCATC 58.536 43.478 3.32 0.00 0.00 2.92
2470 3239 9.859427 TTATTTTGTCTCATCCAAATAAAGCAG 57.141 29.630 0.00 0.00 32.28 4.24
2555 3324 8.648557 TCTAATAATCCACTGAGACAAATTCG 57.351 34.615 0.00 0.00 0.00 3.34
2616 3385 9.448294 GTGAAATCTTTGATTATTGATCTCTGC 57.552 33.333 0.00 0.00 35.69 4.26
2754 3523 8.728833 AGATCAATGATTCTTGAAACAGAGTTC 58.271 33.333 0.00 1.15 38.55 3.01
2883 3667 1.988107 AGAGAAAAGGTGGATCCAGCA 59.012 47.619 38.01 6.43 45.79 4.41
2887 3671 0.706433 AAAGGTGGATCCAGCACCAT 59.294 50.000 38.01 21.89 45.79 3.55
2923 3708 4.853468 TGAGTGGCATATAAAGGGTGAA 57.147 40.909 0.00 0.00 0.00 3.18
2933 3718 4.853924 ATAAAGGGTGAAGCAAACACTG 57.146 40.909 0.00 0.00 38.20 3.66
2945 3730 4.310769 AGCAAACACTGAGTGTCATCTAC 58.689 43.478 19.71 5.94 46.79 2.59
2957 3742 8.958119 TGAGTGTCATCTACTAGTTTTTGTTT 57.042 30.769 0.00 0.00 0.00 2.83
2991 3784 8.924511 ACCATCTCTCTTGAATTGTCTAAAAA 57.075 30.769 0.00 0.00 0.00 1.94
3084 3877 8.455903 AATAGAAGTGCATTGTGCTAATATGT 57.544 30.769 3.41 0.00 45.31 2.29
3133 3926 9.958234 ACTATTCGCTGATACATAATATGCTAG 57.042 33.333 0.00 0.00 0.00 3.42
3208 4001 1.280421 GGAGTGAGGGAGCTGATTGTT 59.720 52.381 0.00 0.00 0.00 2.83
3250 4043 3.055819 TCCAGACTGACACTAAGGCAATC 60.056 47.826 3.32 0.00 32.28 2.67
3291 4084 6.870971 TGAAGTTTGTGTTCAGGTATAACC 57.129 37.500 0.00 0.00 38.99 2.85
3316 4109 9.224267 CCTACTATATGATAATTGCTGCAACTT 57.776 33.333 18.51 14.64 0.00 2.66
3346 4143 2.427506 GACCACTTGAGGACAACCATC 58.572 52.381 0.00 0.00 38.94 3.51
3378 4175 2.224646 ACTTCTCTTGAAACAGGCCCTC 60.225 50.000 0.00 0.00 0.00 4.30
3506 4303 4.994852 CCGGTTTTGAGTCATCAGTTAAGA 59.005 41.667 0.00 0.00 36.61 2.10
3507 4304 5.107065 CCGGTTTTGAGTCATCAGTTAAGAC 60.107 44.000 0.00 0.00 36.61 3.01
3508 4305 5.696724 CGGTTTTGAGTCATCAGTTAAGACT 59.303 40.000 0.00 0.00 44.71 3.24
3509 4306 6.202954 CGGTTTTGAGTCATCAGTTAAGACTT 59.797 38.462 0.00 0.00 42.29 3.01
3510 4307 7.355778 GGTTTTGAGTCATCAGTTAAGACTTG 58.644 38.462 0.00 0.00 42.29 3.16
3511 4308 7.226720 GGTTTTGAGTCATCAGTTAAGACTTGA 59.773 37.037 0.00 0.00 42.29 3.02
3646 4445 5.858381 TGAAAATAGCCTTCTATCGATGCT 58.142 37.500 8.54 10.26 34.53 3.79
3698 4498 1.067821 CCGAGATTTTCTCCGAGGAGG 59.932 57.143 18.16 1.34 40.34 4.30
3712 4512 2.289072 CGAGGAGGAGAAGTCAGCAAAA 60.289 50.000 0.00 0.00 0.00 2.44
3751 4551 9.832445 ATTGATACAGTTTAACGGATATGACTT 57.168 29.630 1.74 0.00 0.00 3.01
3841 4641 4.917998 ACGCAACAGCTAATATATCACTCG 59.082 41.667 0.00 0.00 0.00 4.18
3872 4672 2.229792 TGCACCTTCCATTGAACTGAC 58.770 47.619 0.00 0.00 0.00 3.51
3980 4904 6.587273 AGAAGCTTCTGTTCTAGTCAAGTTT 58.413 36.000 27.96 0.00 35.89 2.66
4010 4934 1.361204 TCCATCAACTCTGCTCCCAA 58.639 50.000 0.00 0.00 0.00 4.12
4463 5410 4.512198 TCGTAGAGCGAGGAGAAATAGAAG 59.488 45.833 0.00 0.00 45.68 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.658634 AGTGAAGTTAGATCTGCCATACTCA 59.341 40.000 5.18 0.00 0.00 3.41
154 155 0.391130 TGATTTCCGTTCCCGAGCAG 60.391 55.000 0.00 0.00 35.63 4.24
187 188 0.749091 TGCCCTCATGCTGATTTCCG 60.749 55.000 0.00 0.00 0.00 4.30
189 190 2.795175 CATGCCCTCATGCTGATTTC 57.205 50.000 0.00 0.00 43.00 2.17
211 212 1.066215 AGGTACAATGACAGCGCATCA 60.066 47.619 11.47 14.02 0.00 3.07
217 218 0.391130 TGCCGAGGTACAATGACAGC 60.391 55.000 0.00 0.00 0.00 4.40
218 219 1.066858 AGTGCCGAGGTACAATGACAG 60.067 52.381 12.65 0.00 33.14 3.51
226 227 2.434359 GTGCCAGTGCCGAGGTAC 60.434 66.667 1.97 1.97 36.33 3.34
278 279 3.876320 CAGCTCCTCTTGAATAAGAAGCC 59.124 47.826 9.07 0.00 43.23 4.35
310 311 1.993370 CGGTCGAAGAATGAGAACCAC 59.007 52.381 0.00 0.00 39.69 4.16
319 320 1.006571 ACACACGCGGTCGAAGAAT 60.007 52.632 12.47 0.00 39.69 2.40
322 323 1.282248 AATCACACACGCGGTCGAAG 61.282 55.000 12.47 0.00 39.41 3.79
403 404 4.755629 GCGACCACAGACTATAGTGATCTA 59.244 45.833 10.90 0.00 37.97 1.98
410 411 3.504134 AGCTATGCGACCACAGACTATAG 59.496 47.826 0.00 0.00 0.00 1.31
413 414 1.405463 CAGCTATGCGACCACAGACTA 59.595 52.381 0.00 0.00 0.00 2.59
460 462 7.065504 AGGTAGTACTACTATTACAACCCCAG 58.934 42.308 27.71 0.00 32.65 4.45
479 481 8.985805 CGTCTTATAAAAACAAACAGAGGTAGT 58.014 33.333 0.00 0.00 0.00 2.73
480 482 8.985805 ACGTCTTATAAAAACAAACAGAGGTAG 58.014 33.333 0.00 0.00 0.00 3.18
481 483 8.891671 ACGTCTTATAAAAACAAACAGAGGTA 57.108 30.769 0.00 0.00 0.00 3.08
482 484 7.797038 ACGTCTTATAAAAACAAACAGAGGT 57.203 32.000 0.00 0.00 0.00 3.85
483 485 9.511144 AAAACGTCTTATAAAAACAAACAGAGG 57.489 29.630 0.00 0.00 0.00 3.69
496 498 9.970395 TGTCTGAAAGTCTAAAACGTCTTATAA 57.030 29.630 0.00 0.00 33.76 0.98
497 499 9.403110 GTGTCTGAAAGTCTAAAACGTCTTATA 57.597 33.333 0.00 0.00 33.76 0.98
498 500 8.142551 AGTGTCTGAAAGTCTAAAACGTCTTAT 58.857 33.333 0.00 0.00 33.76 1.73
499 501 7.434307 CAGTGTCTGAAAGTCTAAAACGTCTTA 59.566 37.037 0.00 0.00 32.44 2.10
500 502 6.255887 CAGTGTCTGAAAGTCTAAAACGTCTT 59.744 38.462 0.00 0.00 32.44 3.01
501 503 5.749109 CAGTGTCTGAAAGTCTAAAACGTCT 59.251 40.000 0.00 0.00 32.44 4.18
502 504 5.519206 ACAGTGTCTGAAAGTCTAAAACGTC 59.481 40.000 3.70 0.00 35.18 4.34
503 505 5.416947 ACAGTGTCTGAAAGTCTAAAACGT 58.583 37.500 3.70 0.00 35.18 3.99
504 506 5.968387 ACAGTGTCTGAAAGTCTAAAACG 57.032 39.130 3.70 0.00 35.18 3.60
505 507 7.303634 TGAACAGTGTCTGAAAGTCTAAAAC 57.696 36.000 0.00 0.00 35.18 2.43
506 508 7.915293 TTGAACAGTGTCTGAAAGTCTAAAA 57.085 32.000 0.00 0.00 35.18 1.52
507 509 7.915293 TTTGAACAGTGTCTGAAAGTCTAAA 57.085 32.000 0.00 0.00 35.18 1.85
508 510 7.915293 TTTTGAACAGTGTCTGAAAGTCTAA 57.085 32.000 0.00 0.00 35.18 2.10
509 511 7.389330 TGTTTTTGAACAGTGTCTGAAAGTCTA 59.611 33.333 0.00 0.00 35.18 2.59
510 512 6.206634 TGTTTTTGAACAGTGTCTGAAAGTCT 59.793 34.615 0.00 0.00 35.18 3.24
511 513 6.378582 TGTTTTTGAACAGTGTCTGAAAGTC 58.621 36.000 0.00 0.00 35.18 3.01
512 514 6.325919 TGTTTTTGAACAGTGTCTGAAAGT 57.674 33.333 0.00 0.00 35.18 2.66
513 515 6.640499 TGTTGTTTTTGAACAGTGTCTGAAAG 59.360 34.615 0.00 0.00 35.18 2.62
514 516 6.419413 GTGTTGTTTTTGAACAGTGTCTGAAA 59.581 34.615 0.00 0.00 34.02 2.69
515 517 5.918011 GTGTTGTTTTTGAACAGTGTCTGAA 59.082 36.000 0.00 0.00 34.02 3.02
516 518 5.009110 TGTGTTGTTTTTGAACAGTGTCTGA 59.991 36.000 0.00 0.00 34.02 3.27
517 519 5.218885 TGTGTTGTTTTTGAACAGTGTCTG 58.781 37.500 0.00 0.00 34.02 3.51
518 520 5.446143 TGTGTTGTTTTTGAACAGTGTCT 57.554 34.783 0.00 0.00 34.02 3.41
519 521 6.517914 TTTGTGTTGTTTTTGAACAGTGTC 57.482 33.333 0.00 0.00 34.02 3.67
520 522 5.050431 GCTTTGTGTTGTTTTTGAACAGTGT 60.050 36.000 0.00 0.00 34.02 3.55
521 523 5.050499 TGCTTTGTGTTGTTTTTGAACAGTG 60.050 36.000 0.00 0.00 34.02 3.66
522 524 5.053145 TGCTTTGTGTTGTTTTTGAACAGT 58.947 33.333 0.00 0.00 34.02 3.55
523 525 5.588568 TGCTTTGTGTTGTTTTTGAACAG 57.411 34.783 0.00 0.00 34.02 3.16
524 526 5.525378 ACTTGCTTTGTGTTGTTTTTGAACA 59.475 32.000 0.00 0.00 0.00 3.18
525 527 5.984627 ACTTGCTTTGTGTTGTTTTTGAAC 58.015 33.333 0.00 0.00 0.00 3.18
526 528 6.425504 CAACTTGCTTTGTGTTGTTTTTGAA 58.574 32.000 0.00 0.00 37.05 2.69
527 529 5.983475 CAACTTGCTTTGTGTTGTTTTTGA 58.017 33.333 0.00 0.00 37.05 2.69
534 536 4.095410 TCAGACAACTTGCTTTGTGTTG 57.905 40.909 4.00 0.00 44.44 3.33
535 537 4.485163 GTTCAGACAACTTGCTTTGTGTT 58.515 39.130 4.00 0.00 39.88 3.32
536 538 3.426159 CGTTCAGACAACTTGCTTTGTGT 60.426 43.478 4.00 0.00 39.88 3.72
537 539 3.100817 CGTTCAGACAACTTGCTTTGTG 58.899 45.455 4.00 0.00 39.88 3.33
538 540 2.747446 ACGTTCAGACAACTTGCTTTGT 59.253 40.909 0.00 0.00 42.55 2.83
539 541 3.063997 AGACGTTCAGACAACTTGCTTTG 59.936 43.478 0.00 0.00 0.00 2.77
540 542 3.270877 AGACGTTCAGACAACTTGCTTT 58.729 40.909 0.00 0.00 0.00 3.51
541 543 2.906354 AGACGTTCAGACAACTTGCTT 58.094 42.857 0.00 0.00 0.00 3.91
542 544 2.604046 AGACGTTCAGACAACTTGCT 57.396 45.000 0.00 0.00 0.00 3.91
543 545 4.992381 ATAAGACGTTCAGACAACTTGC 57.008 40.909 0.00 0.00 0.00 4.01
544 546 9.155053 GTTTTTATAAGACGTTCAGACAACTTG 57.845 33.333 0.00 0.00 0.00 3.16
545 547 8.885722 TGTTTTTATAAGACGTTCAGACAACTT 58.114 29.630 0.00 0.00 0.00 2.66
546 548 8.428186 TGTTTTTATAAGACGTTCAGACAACT 57.572 30.769 0.00 0.00 0.00 3.16
547 549 9.493206 TTTGTTTTTATAAGACGTTCAGACAAC 57.507 29.630 0.00 0.00 0.00 3.32
548 550 9.493206 GTTTGTTTTTATAAGACGTTCAGACAA 57.507 29.630 0.00 0.00 0.00 3.18
549 551 7.847078 CGTTTGTTTTTATAAGACGTTCAGACA 59.153 33.333 0.00 0.00 0.00 3.41
550 552 7.319615 CCGTTTGTTTTTATAAGACGTTCAGAC 59.680 37.037 0.00 0.00 0.00 3.51
551 553 7.224362 TCCGTTTGTTTTTATAAGACGTTCAGA 59.776 33.333 0.00 0.00 0.00 3.27
552 554 7.346695 TCCGTTTGTTTTTATAAGACGTTCAG 58.653 34.615 0.00 0.00 0.00 3.02
553 555 7.244166 TCCGTTTGTTTTTATAAGACGTTCA 57.756 32.000 0.00 0.00 0.00 3.18
554 556 6.793680 CCTCCGTTTGTTTTTATAAGACGTTC 59.206 38.462 0.00 0.00 0.00 3.95
555 557 6.293571 CCCTCCGTTTGTTTTTATAAGACGTT 60.294 38.462 0.00 0.00 0.00 3.99
556 558 5.179929 CCCTCCGTTTGTTTTTATAAGACGT 59.820 40.000 0.00 0.00 0.00 4.34
557 559 5.409214 TCCCTCCGTTTGTTTTTATAAGACG 59.591 40.000 0.00 0.00 0.00 4.18
558 560 6.429078 ACTCCCTCCGTTTGTTTTTATAAGAC 59.571 38.462 0.00 0.00 0.00 3.01
559 561 6.536447 ACTCCCTCCGTTTGTTTTTATAAGA 58.464 36.000 0.00 0.00 0.00 2.10
560 562 6.812879 ACTCCCTCCGTTTGTTTTTATAAG 57.187 37.500 0.00 0.00 0.00 1.73
561 563 8.866970 AATACTCCCTCCGTTTGTTTTTATAA 57.133 30.769 0.00 0.00 0.00 0.98
562 564 8.866970 AAATACTCCCTCCGTTTGTTTTTATA 57.133 30.769 0.00 0.00 0.00 0.98
563 565 7.770366 AAATACTCCCTCCGTTTGTTTTTAT 57.230 32.000 0.00 0.00 0.00 1.40
564 566 7.585579 AAAATACTCCCTCCGTTTGTTTTTA 57.414 32.000 0.00 0.00 0.00 1.52
565 567 6.474140 AAAATACTCCCTCCGTTTGTTTTT 57.526 33.333 0.00 0.00 0.00 1.94
566 568 6.546772 TGTAAAATACTCCCTCCGTTTGTTTT 59.453 34.615 0.00 0.00 0.00 2.43
567 569 6.063404 TGTAAAATACTCCCTCCGTTTGTTT 58.937 36.000 0.00 0.00 0.00 2.83
568 570 5.623169 TGTAAAATACTCCCTCCGTTTGTT 58.377 37.500 0.00 0.00 0.00 2.83
569 571 5.231702 TGTAAAATACTCCCTCCGTTTGT 57.768 39.130 0.00 0.00 0.00 2.83
570 572 6.753107 AATGTAAAATACTCCCTCCGTTTG 57.247 37.500 0.00 0.00 0.00 2.93
571 573 7.173032 AGAAATGTAAAATACTCCCTCCGTTT 58.827 34.615 0.00 0.00 0.00 3.60
572 574 6.718294 AGAAATGTAAAATACTCCCTCCGTT 58.282 36.000 0.00 0.00 0.00 4.44
573 575 6.309389 AGAAATGTAAAATACTCCCTCCGT 57.691 37.500 0.00 0.00 0.00 4.69
574 576 6.598064 ACAAGAAATGTAAAATACTCCCTCCG 59.402 38.462 0.00 0.00 41.63 4.63
575 577 7.067129 GGACAAGAAATGTAAAATACTCCCTCC 59.933 40.741 0.00 0.00 44.12 4.30
576 578 7.201617 CGGACAAGAAATGTAAAATACTCCCTC 60.202 40.741 0.00 0.00 44.12 4.30
577 579 6.598064 CGGACAAGAAATGTAAAATACTCCCT 59.402 38.462 0.00 0.00 44.12 4.20
578 580 6.183360 CCGGACAAGAAATGTAAAATACTCCC 60.183 42.308 0.00 0.00 44.12 4.30
579 581 6.373495 ACCGGACAAGAAATGTAAAATACTCC 59.627 38.462 9.46 0.00 44.12 3.85
580 582 7.094933 ACACCGGACAAGAAATGTAAAATACTC 60.095 37.037 9.46 0.00 44.12 2.59
588 590 5.106475 GCATTAACACCGGACAAGAAATGTA 60.106 40.000 9.46 0.00 44.12 2.29
591 593 4.079253 AGCATTAACACCGGACAAGAAAT 58.921 39.130 9.46 0.00 0.00 2.17
603 605 4.213482 ACACCGAAAGAAGAGCATTAACAC 59.787 41.667 0.00 0.00 0.00 3.32
607 609 4.002906 ACACACCGAAAGAAGAGCATTA 57.997 40.909 0.00 0.00 0.00 1.90
612 614 3.926616 ACCATACACACCGAAAGAAGAG 58.073 45.455 0.00 0.00 0.00 2.85
613 615 5.046878 ACATACCATACACACCGAAAGAAGA 60.047 40.000 0.00 0.00 0.00 2.87
614 616 5.175859 ACATACCATACACACCGAAAGAAG 58.824 41.667 0.00 0.00 0.00 2.85
616 618 4.811969 ACATACCATACACACCGAAAGA 57.188 40.909 0.00 0.00 0.00 2.52
617 619 6.971527 TTTACATACCATACACACCGAAAG 57.028 37.500 0.00 0.00 0.00 2.62
618 620 6.149142 GGTTTTACATACCATACACACCGAAA 59.851 38.462 0.00 0.00 35.67 3.46
625 652 4.333372 CCCGTGGTTTTACATACCATACAC 59.667 45.833 0.00 0.00 46.63 2.90
635 662 3.574354 AAGGTAACCCGTGGTTTTACA 57.426 42.857 12.63 0.00 44.33 2.41
636 663 3.882288 TCAAAGGTAACCCGTGGTTTTAC 59.118 43.478 12.63 6.84 44.33 2.01
637 664 4.162040 TCAAAGGTAACCCGTGGTTTTA 57.838 40.909 12.63 0.00 44.33 1.52
638 665 3.015675 TCAAAGGTAACCCGTGGTTTT 57.984 42.857 12.63 0.74 44.33 2.43
641 668 1.422402 ACATCAAAGGTAACCCGTGGT 59.578 47.619 0.00 0.00 37.65 4.16
642 669 1.810151 CACATCAAAGGTAACCCGTGG 59.190 52.381 0.00 0.00 35.12 4.94
643 670 2.500229 ACACATCAAAGGTAACCCGTG 58.500 47.619 0.00 0.00 35.12 4.94
644 671 2.943036 ACACATCAAAGGTAACCCGT 57.057 45.000 0.00 0.00 35.12 5.28
645 672 4.509616 TCATACACATCAAAGGTAACCCG 58.490 43.478 0.00 0.00 35.12 5.28
646 673 6.827586 TTTCATACACATCAAAGGTAACCC 57.172 37.500 0.00 0.00 37.17 4.11
647 674 8.281212 AGATTTCATACACATCAAAGGTAACC 57.719 34.615 0.00 0.00 37.17 2.85
713 740 6.627395 TCTTTATTCGTTCCAGCTCAAAAA 57.373 33.333 0.00 0.00 0.00 1.94
714 741 6.206634 ACATCTTTATTCGTTCCAGCTCAAAA 59.793 34.615 0.00 0.00 0.00 2.44
715 742 5.705441 ACATCTTTATTCGTTCCAGCTCAAA 59.295 36.000 0.00 0.00 0.00 2.69
716 743 5.245531 ACATCTTTATTCGTTCCAGCTCAA 58.754 37.500 0.00 0.00 0.00 3.02
717 744 4.832248 ACATCTTTATTCGTTCCAGCTCA 58.168 39.130 0.00 0.00 0.00 4.26
718 745 5.351465 TCAACATCTTTATTCGTTCCAGCTC 59.649 40.000 0.00 0.00 0.00 4.09
719 746 5.245531 TCAACATCTTTATTCGTTCCAGCT 58.754 37.500 0.00 0.00 0.00 4.24
720 747 5.545658 TCAACATCTTTATTCGTTCCAGC 57.454 39.130 0.00 0.00 0.00 4.85
721 748 7.493971 AGAGATCAACATCTTTATTCGTTCCAG 59.506 37.037 0.00 0.00 39.71 3.86
722 749 7.278646 CAGAGATCAACATCTTTATTCGTTCCA 59.721 37.037 0.00 0.00 39.71 3.53
723 750 7.278868 ACAGAGATCAACATCTTTATTCGTTCC 59.721 37.037 0.00 0.00 39.71 3.62
724 751 8.190888 ACAGAGATCAACATCTTTATTCGTTC 57.809 34.615 0.00 0.00 39.71 3.95
757 798 9.282569 CTTTCCCTCTTCCAGATAAATAATCAG 57.717 37.037 0.00 0.00 37.03 2.90
771 812 2.438614 GGCGCCTTTCCCTCTTCC 60.439 66.667 22.15 0.00 0.00 3.46
772 813 1.002011 AAGGCGCCTTTCCCTCTTC 60.002 57.895 35.84 0.00 31.29 2.87
774 815 2.352805 CAAGGCGCCTTTCCCTCT 59.647 61.111 38.60 14.61 33.42 3.69
778 1453 0.676782 TCTTAGCAAGGCGCCTTTCC 60.677 55.000 38.60 29.62 44.04 3.13
794 1469 5.073311 TGTCTGCTATACGCTTTCTTCTT 57.927 39.130 0.00 0.00 40.11 2.52
795 1470 4.440802 CCTGTCTGCTATACGCTTTCTTCT 60.441 45.833 0.00 0.00 40.11 2.85
853 1528 1.003839 GACCGACCTGACATGCCAA 60.004 57.895 0.00 0.00 0.00 4.52
904 1590 1.586564 GCGAAGGATGAGACGACGG 60.587 63.158 0.00 0.00 0.00 4.79
937 1623 0.447801 CGTAGCCAAGTGCCAATGTC 59.552 55.000 0.00 0.00 42.71 3.06
1075 1784 1.682740 GGGTTTTGGTCGGAGAAACA 58.317 50.000 11.34 0.00 39.69 2.83
1119 1828 2.125832 TGTCGCGGACCGGAATTC 60.126 61.111 17.22 0.00 37.59 2.17
1144 1853 0.034670 GAGCATCAGGGGCAGTTCTT 60.035 55.000 0.00 0.00 33.17 2.52
1150 1859 1.146930 GATTCGAGCATCAGGGGCA 59.853 57.895 0.00 0.00 33.17 5.36
1178 1890 3.376859 TGAGCTTGTTGAACACGATTTGT 59.623 39.130 5.96 0.00 41.74 2.83
1259 1971 1.749033 GTCGGCTCCCCCTATCTTG 59.251 63.158 0.00 0.00 0.00 3.02
1347 2059 0.394565 GAGGCGCTGGTGAGGATAAT 59.605 55.000 7.64 0.00 0.00 1.28
1349 2061 2.134287 GGAGGCGCTGGTGAGGATA 61.134 63.158 7.64 0.00 0.00 2.59
1460 2172 3.118738 AGGGGCGAATACAGTACAGAAAG 60.119 47.826 0.00 0.00 0.00 2.62
1474 2186 0.695924 TGAATCCAAAGAGGGGCGAA 59.304 50.000 0.00 0.00 38.24 4.70
1476 2188 0.749454 CCTGAATCCAAAGAGGGGCG 60.749 60.000 0.00 0.00 38.24 6.13
1480 2193 1.470098 CGCAACCTGAATCCAAAGAGG 59.530 52.381 0.00 0.00 39.47 3.69
1482 2195 0.881118 GCGCAACCTGAATCCAAAGA 59.119 50.000 0.30 0.00 0.00 2.52
1483 2196 0.109132 GGCGCAACCTGAATCCAAAG 60.109 55.000 10.83 0.00 34.51 2.77
1496 2209 4.713735 TTGATGGGAGCGGCGCAA 62.714 61.111 35.02 14.83 43.16 4.85
1511 2224 4.093408 ACGCATATACTGAAACTGTGCTTG 59.907 41.667 0.00 0.00 0.00 4.01
1513 2226 3.618594 CACGCATATACTGAAACTGTGCT 59.381 43.478 0.00 0.00 0.00 4.40
1514 2227 3.370978 ACACGCATATACTGAAACTGTGC 59.629 43.478 0.00 0.00 0.00 4.57
1515 2228 5.348724 AGAACACGCATATACTGAAACTGTG 59.651 40.000 0.00 0.00 0.00 3.66
1526 2241 4.712122 TGAGACACAGAACACGCATATA 57.288 40.909 0.00 0.00 0.00 0.86
1529 2244 2.238942 TTGAGACACAGAACACGCAT 57.761 45.000 0.00 0.00 0.00 4.73
1544 2259 7.551974 AGTTGAGTTTCAGGATATGTCATTGAG 59.448 37.037 0.00 0.00 0.00 3.02
1548 2263 8.543774 ACTAAGTTGAGTTTCAGGATATGTCAT 58.456 33.333 0.00 0.00 0.00 3.06
1574 2294 8.808240 ATAATACTAACCCATAAGGACTTGGA 57.192 34.615 0.00 0.00 39.89 3.53
1647 2378 5.105473 ACCAGCATCAATCTGATTCTTTTGG 60.105 40.000 0.00 7.67 34.28 3.28
1650 2381 6.183360 GCTTACCAGCATCAATCTGATTCTTT 60.183 38.462 0.00 0.00 46.49 2.52
1676 2407 4.853924 AAAATGCAGAACCAAGACGAAT 57.146 36.364 0.00 0.00 0.00 3.34
1710 2441 6.093219 CCAAGTCAACAGACATCCAGATAAAG 59.907 42.308 0.00 0.00 34.69 1.85
1724 2455 4.353737 CAACACACAATCCAAGTCAACAG 58.646 43.478 0.00 0.00 0.00 3.16
1731 2462 1.000060 CTGCCCAACACACAATCCAAG 60.000 52.381 0.00 0.00 0.00 3.61
1801 2532 0.958876 GTGGGTGGTTGGGATTCGTC 60.959 60.000 0.00 0.00 0.00 4.20
1804 2535 0.404040 TGAGTGGGTGGTTGGGATTC 59.596 55.000 0.00 0.00 0.00 2.52
1816 2547 0.754957 TGCCAAGGTTGTTGAGTGGG 60.755 55.000 0.00 0.00 0.00 4.61
1822 2553 0.106335 TGCCATTGCCAAGGTTGTTG 59.894 50.000 0.00 0.00 36.33 3.33
1827 2558 1.550072 GTATGTTGCCATTGCCAAGGT 59.450 47.619 0.00 0.00 36.33 3.50
1843 2574 3.766151 TCGCGAAGAACTTACCAGTATG 58.234 45.455 6.20 0.00 30.68 2.39
1857 2588 5.143660 CAGACTTATAGACTCATCGCGAAG 58.856 45.833 15.24 9.61 0.00 3.79
1860 2591 4.475763 ACAGACTTATAGACTCATCGCG 57.524 45.455 0.00 0.00 0.00 5.87
1890 2621 7.880195 AGAGCAATTGAACTGTAATGAAGTAGT 59.120 33.333 10.34 0.00 0.00 2.73
1891 2622 8.261492 AGAGCAATTGAACTGTAATGAAGTAG 57.739 34.615 10.34 0.00 0.00 2.57
1901 2636 5.049129 GTGAAAGCTAGAGCAATTGAACTGT 60.049 40.000 10.34 0.00 45.16 3.55
1909 2644 7.224522 AGATTTTTGTGAAAGCTAGAGCAAT 57.775 32.000 4.01 0.00 45.16 3.56
1931 2666 2.440409 AGGCGTTCGAGGTAGTAAAGA 58.560 47.619 0.00 0.00 0.00 2.52
1937 2675 1.798079 GCACTAAGGCGTTCGAGGTAG 60.798 57.143 0.00 0.00 0.00 3.18
1940 2678 0.454600 TAGCACTAAGGCGTTCGAGG 59.545 55.000 0.00 0.00 39.27 4.63
1943 2681 2.789893 GAGAATAGCACTAAGGCGTTCG 59.210 50.000 0.00 0.00 37.91 3.95
1956 2694 5.517904 GCCAATCAATGTTCAGAGAATAGC 58.482 41.667 0.00 0.00 0.00 2.97
2050 2788 8.358895 ACCTGTCAGTAGTTAGAACTTAGAAAC 58.641 37.037 0.00 0.00 40.37 2.78
2085 2823 8.747666 GTTAGACATCTATCGACTGAACATTTC 58.252 37.037 0.00 0.00 0.00 2.17
2105 2843 3.087781 ACGGAGGGAGTAACTGTTAGAC 58.912 50.000 0.00 0.00 0.00 2.59
2107 2845 3.119209 GGAACGGAGGGAGTAACTGTTAG 60.119 52.174 0.00 0.00 34.00 2.34
2130 2868 7.743104 ACATTCATTTCTGTGACGAGTAATTC 58.257 34.615 0.00 0.00 0.00 2.17
2131 2869 7.672983 ACATTCATTTCTGTGACGAGTAATT 57.327 32.000 0.00 0.00 0.00 1.40
2132 2870 8.948631 ATACATTCATTTCTGTGACGAGTAAT 57.051 30.769 0.00 0.00 0.00 1.89
2133 2871 8.251026 AGATACATTCATTTCTGTGACGAGTAA 58.749 33.333 0.00 0.00 0.00 2.24
2134 2872 7.772166 AGATACATTCATTTCTGTGACGAGTA 58.228 34.615 0.00 0.00 0.00 2.59
2135 2873 6.634805 AGATACATTCATTTCTGTGACGAGT 58.365 36.000 0.00 0.00 0.00 4.18
2136 2874 8.131731 TCTAGATACATTCATTTCTGTGACGAG 58.868 37.037 0.00 0.00 0.00 4.18
2137 2875 7.996385 TCTAGATACATTCATTTCTGTGACGA 58.004 34.615 0.00 0.00 0.00 4.20
2138 2876 8.697960 CATCTAGATACATTCATTTCTGTGACG 58.302 37.037 4.54 0.00 0.00 4.35
2139 2877 9.539825 ACATCTAGATACATTCATTTCTGTGAC 57.460 33.333 4.54 0.00 0.00 3.67
2168 2906 8.580720 GCAGAGATGGATGTATCTAGAACTAAA 58.419 37.037 0.00 0.00 37.53 1.85
2169 2907 7.094592 CGCAGAGATGGATGTATCTAGAACTAA 60.095 40.741 0.00 0.00 37.53 2.24
2170 2908 6.372937 CGCAGAGATGGATGTATCTAGAACTA 59.627 42.308 0.00 0.00 37.53 2.24
2171 2909 5.182950 CGCAGAGATGGATGTATCTAGAACT 59.817 44.000 0.00 0.00 37.53 3.01
2172 2910 5.182190 TCGCAGAGATGGATGTATCTAGAAC 59.818 44.000 0.00 0.00 37.53 3.01
2173 2911 5.182190 GTCGCAGAGATGGATGTATCTAGAA 59.818 44.000 0.00 0.00 37.53 2.10
2174 2912 4.697828 GTCGCAGAGATGGATGTATCTAGA 59.302 45.833 0.00 0.00 37.53 2.43
2175 2913 4.436718 CGTCGCAGAGATGGATGTATCTAG 60.437 50.000 0.00 0.00 37.53 2.43
2176 2914 3.437049 CGTCGCAGAGATGGATGTATCTA 59.563 47.826 0.00 0.00 37.53 1.98
2177 2915 2.227626 CGTCGCAGAGATGGATGTATCT 59.772 50.000 0.00 0.00 40.02 1.98
2178 2916 2.226674 TCGTCGCAGAGATGGATGTATC 59.773 50.000 0.00 0.00 36.95 2.24
2179 2917 2.227626 CTCGTCGCAGAGATGGATGTAT 59.772 50.000 1.41 0.00 40.57 2.29
2180 2918 1.604278 CTCGTCGCAGAGATGGATGTA 59.396 52.381 1.41 0.00 40.57 2.29
2181 2919 0.383590 CTCGTCGCAGAGATGGATGT 59.616 55.000 1.41 0.00 40.57 3.06
2182 2920 0.383590 ACTCGTCGCAGAGATGGATG 59.616 55.000 12.74 0.00 40.57 3.51
2183 2921 1.968704 TACTCGTCGCAGAGATGGAT 58.031 50.000 12.74 0.00 40.57 3.41
2184 2922 1.746470 TTACTCGTCGCAGAGATGGA 58.254 50.000 12.74 0.00 40.57 3.41
2185 2923 2.783828 ATTACTCGTCGCAGAGATGG 57.216 50.000 12.74 0.00 40.57 3.51
2186 2924 3.243877 CCAAATTACTCGTCGCAGAGATG 59.756 47.826 12.74 0.00 40.57 2.90
2187 2925 3.130516 TCCAAATTACTCGTCGCAGAGAT 59.869 43.478 12.74 2.08 40.57 2.75
2188 2926 2.490509 TCCAAATTACTCGTCGCAGAGA 59.509 45.455 12.74 0.00 40.57 3.10
2189 2927 2.876091 TCCAAATTACTCGTCGCAGAG 58.124 47.619 5.59 5.59 43.56 3.35
2190 2928 2.991190 GTTCCAAATTACTCGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2191 2929 2.222508 CGTTCCAAATTACTCGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2192 2930 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2193 2931 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2194 2932 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2195 2933 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2196 2934 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2197 2935 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2198 2936 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2199 2937 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2200 2938 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2201 2939 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
2202 2940 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
2203 2941 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
2204 2942 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
2205 2943 2.385803 GATCTACTCCCTCCGTTCCAA 58.614 52.381 0.00 0.00 0.00 3.53
2206 2944 1.411216 GGATCTACTCCCTCCGTTCCA 60.411 57.143 0.00 0.00 38.19 3.53
2207 2945 1.330234 GGATCTACTCCCTCCGTTCC 58.670 60.000 0.00 0.00 38.19 3.62
2208 2946 2.068834 TGGATCTACTCCCTCCGTTC 57.931 55.000 0.00 0.00 44.23 3.95
2209 2947 2.777459 ATGGATCTACTCCCTCCGTT 57.223 50.000 0.00 0.00 44.23 4.44
2210 2948 3.897657 TTATGGATCTACTCCCTCCGT 57.102 47.619 0.00 0.00 44.23 4.69
2211 2949 5.262009 TGTATTATGGATCTACTCCCTCCG 58.738 45.833 0.00 0.00 44.23 4.63
2212 2950 5.659079 CCTGTATTATGGATCTACTCCCTCC 59.341 48.000 0.00 0.00 44.23 4.30
2213 2951 6.494952 TCCTGTATTATGGATCTACTCCCTC 58.505 44.000 0.00 0.00 44.23 4.30
2214 2952 6.485388 TCCTGTATTATGGATCTACTCCCT 57.515 41.667 0.00 0.00 44.23 4.20
2215 2953 7.554959 TTTCCTGTATTATGGATCTACTCCC 57.445 40.000 0.00 0.00 44.23 4.30
2281 3049 9.569122 GGTCTATAGAGAGAATACAGAACTTCT 57.431 37.037 1.64 0.00 34.48 2.85
2286 3054 9.137459 CTTTGGGTCTATAGAGAGAATACAGAA 57.863 37.037 1.64 0.00 30.20 3.02
2287 3055 8.282982 ACTTTGGGTCTATAGAGAGAATACAGA 58.717 37.037 1.64 0.00 30.20 3.41
2288 3056 8.356657 CACTTTGGGTCTATAGAGAGAATACAG 58.643 40.741 1.64 0.00 30.20 2.74
2289 3057 7.287927 CCACTTTGGGTCTATAGAGAGAATACA 59.712 40.741 1.64 0.00 32.67 2.29
2290 3058 7.288158 ACCACTTTGGGTCTATAGAGAGAATAC 59.712 40.741 1.64 0.00 43.37 1.89
2291 3059 7.363031 ACCACTTTGGGTCTATAGAGAGAATA 58.637 38.462 1.64 0.00 43.37 1.75
2292 3060 6.206042 ACCACTTTGGGTCTATAGAGAGAAT 58.794 40.000 1.64 0.00 43.37 2.40
2293 3061 5.590818 ACCACTTTGGGTCTATAGAGAGAA 58.409 41.667 1.64 0.00 43.37 2.87
2294 3062 5.208294 ACCACTTTGGGTCTATAGAGAGA 57.792 43.478 1.64 0.00 43.37 3.10
2305 3073 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2306 3074 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2307 3075 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2308 3076 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
2309 3077 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
2310 3078 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
2311 3079 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
2312 3080 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
2313 3081 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
2314 3082 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
2315 3083 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
2316 3084 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
2317 3085 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
2318 3086 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
2319 3087 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
2320 3088 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
2321 3089 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2322 3090 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2323 3091 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2335 3103 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2338 3106 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2339 3107 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2340 3108 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2341 3109 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2347 3115 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2348 3116 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2349 3117 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2350 3118 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2351 3119 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2371 3139 6.603201 CCAGGCCAATAGAGAGAATACAAAAA 59.397 38.462 5.01 0.00 0.00 1.94
2374 3142 4.968719 TCCAGGCCAATAGAGAGAATACAA 59.031 41.667 5.01 0.00 0.00 2.41
2380 3148 3.387962 ACATTCCAGGCCAATAGAGAGA 58.612 45.455 5.01 0.00 0.00 3.10
2406 3174 6.095377 ACAAAACAAAAGCAAGACTTCTGAG 58.905 36.000 0.00 0.00 37.75 3.35
2470 3239 7.787725 TCTTTTATTTCTATCTTTCCTCCGC 57.212 36.000 0.00 0.00 0.00 5.54
2503 3272 3.012518 GGTACCACGACTAGCTGAGTAA 58.987 50.000 7.15 0.00 39.06 2.24
2588 3357 9.690913 AGAGATCAATAATCAAAGATTTCACCA 57.309 29.630 0.00 0.00 36.79 4.17
2589 3358 9.947669 CAGAGATCAATAATCAAAGATTTCACC 57.052 33.333 0.00 0.00 36.79 4.02
2598 3367 7.568349 ACCTACAGCAGAGATCAATAATCAAA 58.432 34.615 0.00 0.00 36.79 2.69
2616 3385 0.037326 TTGCGCTTCCAGACCTACAG 60.037 55.000 9.73 0.00 0.00 2.74
2754 3523 2.938956 ACCACTTCAGAAAGGTGAGG 57.061 50.000 6.22 0.00 36.78 3.86
2780 3549 6.333416 TCTTCAGTCTTATCCAAAGTGATCG 58.667 40.000 0.00 0.00 0.00 3.69
2781 3550 8.203485 AGATCTTCAGTCTTATCCAAAGTGATC 58.797 37.037 0.00 0.00 0.00 2.92
2853 3637 3.265791 CACCTTTTCTCTGAGGGATTCG 58.734 50.000 4.59 0.00 37.36 3.34
2883 3667 6.151648 CCACTCATTGTCTCATTAAACATGGT 59.848 38.462 0.00 0.00 0.00 3.55
2887 3671 5.069318 TGCCACTCATTGTCTCATTAAACA 58.931 37.500 0.00 0.00 0.00 2.83
2991 3784 7.714377 TCCAACAATGAAACATTTAGCACAAAT 59.286 29.630 0.00 0.00 0.00 2.32
2994 3787 5.982516 GTCCAACAATGAAACATTTAGCACA 59.017 36.000 0.00 0.00 0.00 4.57
3084 3877 8.015185 AGTTAACCTGTTCTAGTGTTCTTGTA 57.985 34.615 0.88 0.00 0.00 2.41
3185 3978 3.465403 CAGCTCCCTCACTCCCCG 61.465 72.222 0.00 0.00 0.00 5.73
3208 4001 2.437281 GAGAAGCTCATCATCCTTCCCA 59.563 50.000 0.00 0.00 36.50 4.37
3250 4043 2.074948 AGCCACATCAGCCCTAGGG 61.075 63.158 24.89 24.89 38.57 3.53
3316 4109 5.724370 TGTCCTCAAGTGGTCCATAGAATAA 59.276 40.000 0.00 0.00 0.00 1.40
3323 4116 1.073923 GGTTGTCCTCAAGTGGTCCAT 59.926 52.381 0.00 0.00 33.97 3.41
3378 4175 5.152623 TGAACTTCACCTCTTCATACTGG 57.847 43.478 0.00 0.00 0.00 4.00
3432 4229 3.835790 TTTCGTTGGGGTGCCCTCG 62.836 63.158 7.26 9.77 45.70 4.63
3506 4303 7.708752 GCTAGAAATGTACTTATGCTCTCAAGT 59.291 37.037 0.00 0.00 38.50 3.16
3507 4304 7.925483 AGCTAGAAATGTACTTATGCTCTCAAG 59.075 37.037 0.00 0.00 0.00 3.02
3508 4305 7.786030 AGCTAGAAATGTACTTATGCTCTCAA 58.214 34.615 0.00 0.00 0.00 3.02
3509 4306 7.353414 AGCTAGAAATGTACTTATGCTCTCA 57.647 36.000 0.00 0.00 0.00 3.27
3510 4307 9.921637 ATAAGCTAGAAATGTACTTATGCTCTC 57.078 33.333 0.00 0.00 33.45 3.20
3555 4354 4.881273 TCATAATGCACAAGGATACACACC 59.119 41.667 0.00 0.00 41.41 4.16
3646 4445 7.104043 CATAAATTGCTTCTCCAATCTCCAA 57.896 36.000 0.00 0.00 34.50 3.53
3751 4551 7.726216 TGAGTCAAGAGTGTGAAAAGAAGATA 58.274 34.615 0.00 0.00 0.00 1.98
3841 4641 0.950116 GAAGGTGCATATGAGCTGCC 59.050 55.000 6.97 0.40 38.89 4.85
3872 4672 3.429085 GGTAGCGCTGATGTTTCATTTG 58.571 45.455 22.90 0.00 0.00 2.32
3980 4904 6.830324 AGCAGAGTTGATGGATATTTTTGCTA 59.170 34.615 0.00 0.00 35.47 3.49
4010 4934 5.799213 TGTTGTTGAATTTTGACCCTTTGT 58.201 33.333 0.00 0.00 0.00 2.83
4249 5196 0.322975 GGTGCCTCTGCTTCAAGAGA 59.677 55.000 2.79 0.00 45.59 3.10
4463 5410 1.813337 GCGCTTCAAGGAGGCTCTC 60.813 63.158 15.23 4.64 32.35 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.