AutoCloner

Multiple sequence alignment - TraesCS5A01G481100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G481100	chr5A	100.000	4831	0	0	1	4831	653707323	653712153	0.000000e+00	8922
1	TraesCS5A01G481100	chr5A	86.653	989	132	0	1123	2111	651848813	651847825	0.000000e+00	1096
2	TraesCS5A01G481100	chr5B	93.598	4186	196	27	663	4831	662025928	662030058	0.000000e+00	6180
3	TraesCS5A01G481100	chr5B	84.722	2232	314	16	1123	3345	659818715	659816502	0.000000e+00	2207
4	TraesCS5A01G481100	chr5B	89.655	696	35	13	3	663	662024056	662024749	0.000000e+00	852
5	TraesCS5A01G481100	chr5B	85.714	539	60	11	141	663	659821480	659820943	1.960000e-153	553
6	TraesCS5A01G481100	chr5B	93.103	116	8	0	790	905	451432989	451432874	2.310000e-38	171
7	TraesCS5A01G481100	chr5D	95.935	2460	74	4	1099	3552	526562895	526565334	0.000000e+00	3965
8	TraesCS5A01G481100	chr5D	85.019	2156	300	12	970	3118	525477880	525475741	0.000000e+00	2170
9	TraesCS5A01G481100	chr5D	95.927	1203	45	4	3632	4831	526565329	526566530	0.000000e+00	1947
10	TraesCS5A01G481100	chr5D	91.349	682	36	7	3	663	526561343	526562022	0.000000e+00	911
11	TraesCS5A01G481100	chr5D	81.497	481	65	14	198	663	525482073	525481602	1.640000e-99	374
12	TraesCS5A01G481100	chr6B	84.290	1394	195	13	931	2314	699062053	699060674	0.000000e+00	1339
13	TraesCS5A01G481100	chr6B	82.059	1059	171	12	2310	3358	699030823	699029774	0.000000e+00	885
14	TraesCS5A01G481100	chr2A	79.492	551	109	4	1716	2264	764786624	764786076	5.860000e-104	388
15	TraesCS5A01G481100	chr7D	73.023	1138	258	32	1069	2179	11665524	11666639	5.950000e-94	355
16	TraesCS5A01G481100	chr4A	72.906	1122	244	34	1070	2157	726293934	726295029	2.790000e-87	333
17	TraesCS5A01G481100	chr1A	92.913	127	6	2	791	914	463197095	463196969	1.070000e-41	182
18	TraesCS5A01G481100	chr4B	92.437	119	5	4	789	905	391565603	391565487	2.990000e-37	167
19	TraesCS5A01G481100	chr1B	91.736	121	9	1	791	910	423587850	423587970	2.990000e-37	167
20	TraesCS5A01G481100	chr4D	91.667	120	9	1	792	910	105237923	105237804	1.080000e-36	165
21	TraesCS5A01G481100	chr4D	90.244	123	10	2	791	912	389210115	389210236	5.000000e-35	159
22	TraesCS5A01G481100	chr3B	91.597	119	8	2	785	902	467970780	467970897	3.870000e-36	163
23	TraesCS5A01G481100	chr3A	91.057	123	8	3	791	911	31817606	31817485	3.870000e-36	163
24	TraesCS5A01G481100	chr2B	90.909	121	10	1	791	910	148871963	148871843	1.390000e-35	161

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G481100	chr5A	653707323	653712153	4830	False	8922.000000	8922	100.000000	1	4831	1	chr5A.!!$F1	4830
1	TraesCS5A01G481100	chr5A	651847825	651848813	988	True	1096.000000	1096	86.653000	1123	2111	1	chr5A.!!$R1	988
2	TraesCS5A01G481100	chr5B	662024056	662030058	6002	False	3516.000000	6180	91.626500	3	4831	2	chr5B.!!$F1	4828
3	TraesCS5A01G481100	chr5B	659816502	659821480	4978	True	1380.000000	2207	85.218000	141	3345	2	chr5B.!!$R2	3204
4	TraesCS5A01G481100	chr5D	526561343	526566530	5187	False	2274.333333	3965	94.403667	3	4831	3	chr5D.!!$F1	4828
5	TraesCS5A01G481100	chr5D	525475741	525482073	6332	True	1272.000000	2170	83.258000	198	3118	2	chr5D.!!$R1	2920
6	TraesCS5A01G481100	chr6B	699060674	699062053	1379	True	1339.000000	1339	84.290000	931	2314	1	chr6B.!!$R2	1383
7	TraesCS5A01G481100	chr6B	699029774	699030823	1049	True	885.000000	885	82.059000	2310	3358	1	chr6B.!!$R1	1048
8	TraesCS5A01G481100	chr2A	764786076	764786624	548	True	388.000000	388	79.492000	1716	2264	1	chr2A.!!$R1	548
9	TraesCS5A01G481100	chr7D	11665524	11666639	1115	False	355.000000	355	73.023000	1069	2179	1	chr7D.!!$F1	1110
10	TraesCS5A01G481100	chr4A	726293934	726295029	1095	False	333.000000	333	72.906000	1070	2157	1	chr4A.!!$F1	1087

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
268	283	1.651240	CGCTGGATGCTTCCCAACAG	61.651	60.0	15.62	7.62	41.83	3.16	F
1896	7256	0.526524	CCTGACAAGGCTCGTCGATC	60.527	60.0	0.46	0.00	36.56	3.69	F
2909	8275	0.112218	AATTGTGGGTGCAGGTGCTA	59.888	50.0	3.18	0.00	42.66	3.49	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2250	7613	1.064463	CATTAGCCTGGCTTGGAAGGA	60.064	52.381	28.55	3.28	40.44	3.36	R
3597	8977	0.321564	TTGATTCCTGCGAGTGGTGG	60.322	55.000	0.00	0.00	0.00	4.61	R
4126	9506	0.180406	AGGTGTTCACGCTTGAAGGT	59.820	50.000	5.78	0.00	42.60	3.50	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
104	108	5.450965	GCAACAATTAGTTAGGCAGATGCAT	60.451	40.000	0.00	0.00	39.92	3.96
223	238	4.235762	GCTTCGCTCGGCCCCATA	62.236	66.667	0.00	0.00	0.00	2.74
233	248	2.844839	GCCCCATAGGTCGCCTCT	60.845	66.667	1.46	0.00	38.26	3.69
263	278	2.028130	CATTCGCTGGATGCTTCCC	58.972	57.895	15.62	0.87	41.83	3.97
268	283	1.651240	CGCTGGATGCTTCCCAACAG	61.651	60.000	15.62	7.62	41.83	3.16
499	538	3.561725	GTGCTCCTGTTAGTGCCATATTC	59.438	47.826	0.00	0.00	0.00	1.75
553	592	2.538333	CCAGATTGCGCAAGATTTCTCG	60.538	50.000	28.62	14.55	43.02	4.04
706	4471	5.595133	CCCCTTTTTCTTGTAAAGGTGTACA	59.405	40.000	12.04	0.00	46.64	2.90
782	4548	2.915869	TCTAAACTCATGGACCCACCT	58.084	47.619	0.00	0.00	39.86	4.00
818	4584	2.597305	CTCCGTCCGAAAATACTTGTCG	59.403	50.000	0.00	0.00	34.58	4.35
839	4615	5.004448	TCGGTGAGATGGATGTATCTAGAC	58.996	45.833	0.00	0.00	37.53	2.59
840	4616	4.142795	CGGTGAGATGGATGTATCTAGACG	60.143	50.000	0.00	0.00	37.53	4.18
843	4619	6.600032	GGTGAGATGGATGTATCTAGACGTAT	59.400	42.308	0.00	0.00	37.53	3.06
844	4620	7.121463	GGTGAGATGGATGTATCTAGACGTATT	59.879	40.741	0.00	0.00	37.53	1.89
845	4621	8.516234	GTGAGATGGATGTATCTAGACGTATTT	58.484	37.037	0.00	0.00	37.53	1.40
892	4678	8.801882	TTATCCATTTCTCCGACAAGTATTTT	57.198	30.769	0.00	0.00	0.00	1.82
902	4688	3.671433	CGACAAGTATTTTCGGACGGAGA	60.671	47.826	0.00	0.00	0.00	3.71
905	4691	4.159879	ACAAGTATTTTCGGACGGAGAGAT	59.840	41.667	0.00	0.00	0.00	2.75
907	6218	5.435820	AGTATTTTCGGACGGAGAGATAC	57.564	43.478	0.00	0.00	0.00	2.24
909	6220	4.939052	ATTTTCGGACGGAGAGATACAT	57.061	40.909	0.00	0.00	0.00	2.29
1028	6351	9.267084	GTATCCTTCTTCTCATGTATTCCTTTC	57.733	37.037	0.00	0.00	0.00	2.62
1213	6543	4.032960	TCCTTATGGTGATTGTTGCAGT	57.967	40.909	0.00	0.00	34.23	4.40
1217	6547	5.295292	CCTTATGGTGATTGTTGCAGTAGAG	59.705	44.000	0.00	0.00	0.00	2.43
1240	6570	3.884895	ACTGACAACCACACAGATTGAA	58.115	40.909	0.00	0.00	35.85	2.69
1292	6622	8.703604	TGAGTCAGAGTACATATTTAACTTGC	57.296	34.615	0.00	0.00	0.00	4.01
1644	6986	0.824109	CCAGAGGGCTACACGATCAA	59.176	55.000	0.00	0.00	0.00	2.57
1696	7038	2.096819	TGAAAGTTTTGTCAGTGACGCC	59.903	45.455	18.17	6.06	34.95	5.68
1896	7256	0.526524	CCTGACAAGGCTCGTCGATC	60.527	60.000	0.46	0.00	36.56	3.69
2061	7424	2.322355	ATTTGGGCTGATCGAGACAG	57.678	50.000	15.19	15.19	38.27	3.51
2111	7474	5.527951	GGTGAACTCTGTCGACTGAGATATA	59.472	44.000	41.53	26.42	42.37	0.86
2179	7542	2.686915	AGGGTTACGATACTTGGAGACG	59.313	50.000	0.00	0.00	0.00	4.18
2206	7569	5.452496	GCAAGTAGATGGAAGACTATCTGCA	60.452	44.000	12.09	0.00	44.37	4.41
2250	7613	1.209747	GGAGAAATTACGGCACCTCCT	59.790	52.381	0.00	0.00	37.71	3.69
2431	7794	4.100808	ACTCTGACATCTTTAGGCTCATCC	59.899	45.833	0.00	0.00	0.00	3.51
2542	7905	1.202177	CCGTGGATTTGCATCTTTCCG	60.202	52.381	0.00	0.00	0.00	4.30
2696	8059	0.990374	AGCACCTGCAGAGAGGATTT	59.010	50.000	17.39	0.00	45.16	2.17
2909	8275	0.112218	AATTGTGGGTGCAGGTGCTA	59.888	50.000	3.18	0.00	42.66	3.49
3195	8568	4.690748	CCTGTCTTTCTTTGACGCTAATCA	59.309	41.667	0.00	0.00	37.26	2.57
3232	8605	2.907910	TTCTACGTTACTGGAGTCGC	57.092	50.000	0.00	0.00	0.00	5.19
3237	8610	2.678934	TTACTGGAGTCGCCGCCT	60.679	61.111	0.00	0.00	40.66	5.52
3427	8800	1.725557	GCTCTCCGCCAGTCATACGA	61.726	60.000	0.00	0.00	0.00	3.43
3448	8821	2.100584	AGCTAACAATCTGCTCGAGGAG	59.899	50.000	26.47	26.47	30.41	3.69
3449	8822	2.801342	GCTAACAATCTGCTCGAGGAGG	60.801	54.545	30.47	18.52	34.00	4.30
3450	8823	1.561643	AACAATCTGCTCGAGGAGGA	58.438	50.000	30.47	18.74	34.00	3.71
3558	8938	3.764885	ATTCGTTTTGCCATAGTGCTC	57.235	42.857	0.00	0.00	0.00	4.26
3589	8969	9.155975	CAGATAATTATCTATCTTTTGGGTCCG	57.844	37.037	24.24	6.50	40.91	4.79
3597	8977	1.065709	TCTTTTGGGTCCGGAGCATAC	60.066	52.381	32.94	17.58	0.00	2.39
3619	8999	1.003580	ACCACTCGCAGGAATCAACAT	59.996	47.619	0.00	0.00	0.00	2.71
3620	9000	2.086869	CCACTCGCAGGAATCAACATT	58.913	47.619	0.00	0.00	0.00	2.71
3621	9001	2.096496	CCACTCGCAGGAATCAACATTC	59.904	50.000	0.00	0.00	38.19	2.67
3661	9041	5.003692	TGCTTGTTATGCTGTTTGAAACA	57.996	34.783	10.65	10.65	39.52	2.83
3662	9042	5.414360	TGCTTGTTATGCTGTTTGAAACAA	58.586	33.333	12.26	0.00	41.61	2.83
3735	9115	1.141019	GCACAGATGGCAATGGCTG	59.859	57.895	8.59	0.34	40.87	4.85
3746	9126	2.901249	GCAATGGCTGATTTGCATTCT	58.099	42.857	2.96	0.00	45.83	2.40
3808	9188	3.802866	CTTTCTTCATCCAGTCCCTAGC	58.197	50.000	0.00	0.00	0.00	3.42
3856	9236	4.020128	AGGTAGAGTCAACCATTCAGAACC	60.020	45.833	0.00	0.00	39.64	3.62
3863	9243	3.256383	TCAACCATTCAGAACCTGCAATG	59.744	43.478	0.00	0.00	33.33	2.82
3875	9255	4.579454	ACCTGCAATGCATGATTATCAC	57.421	40.909	17.01	0.00	38.13	3.06
4126	9506	5.868801	CAGTCAAACTTTTTCAGCTTCCAAA	59.131	36.000	0.00	0.00	0.00	3.28
4144	9524	1.021968	AACCTTCAAGCGTGAACACC	58.978	50.000	11.22	0.00	38.88	4.16
4288	9668	2.184579	CTCGGCGAAGGAGGGTTC	59.815	66.667	12.13	0.00	0.00	3.62
4310	9690	5.394738	TCGGATCTGTCTATAAAGGATGGT	58.605	41.667	0.42	0.00	0.00	3.55
4573	9954	4.694760	AGCAGAAAAGGAAGCCAAAAAT	57.305	36.364	0.00	0.00	0.00	1.82
4582	9963	9.109393	GAAAAGGAAGCCAAAAATTAAAGAAGT	57.891	29.630	0.00	0.00	0.00	3.01
4583	9964	8.662781	AAAGGAAGCCAAAAATTAAAGAAGTC	57.337	30.769	0.00	0.00	0.00	3.01
4631	10012	4.758688	TGCTACTATTGCCGATATCATGG	58.241	43.478	3.12	0.00	0.00	3.66
4689	10070	5.284861	TGGCCATAGTTACGTGATGTATT	57.715	39.130	0.00	0.00	31.81	1.89
4735	10116	2.438434	CCCATGGTTCGCACCTCC	60.438	66.667	11.73	0.00	44.61	4.30
4780	10161	5.287752	GCATTCATTTACACACAGCTTCATG	59.712	40.000	0.00	0.00	0.00	3.07

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	2.034687	AAAGCATGCCTGACCGCT	59.965	55.556	15.66	0.00	35.90	5.52
6	7	1.300971	GCACGAGAAAGCATGCCTGA	61.301	55.000	15.66	0.00	31.71	3.86
26	27	6.923012	AGAACATGGATGAGAATATCGAGAG	58.077	40.000	0.00	0.00	0.00	3.20
59	63	3.371380	GCCATGGATGAGAAGTTCCTCTT	60.371	47.826	18.40	0.00	39.32	2.85
63	67	2.424956	GTTGCCATGGATGAGAAGTTCC	59.575	50.000	18.40	0.00	0.00	3.62
64	68	3.084039	TGTTGCCATGGATGAGAAGTTC	58.916	45.455	18.40	0.00	0.00	3.01
104	108	1.367346	TTGCATCCCCACCTGAAGTA	58.633	50.000	0.00	0.00	0.00	2.24
233	248	2.183300	CGAATGGAGTCGCCGGAA	59.817	61.111	5.05	0.00	40.66	4.30
256	271	1.073722	CAGAGGCTGTTGGGAAGCA	59.926	57.895	0.00	0.00	42.69	3.91
263	278	2.435586	CTCCGGCAGAGGCTGTTG	60.436	66.667	0.00	0.00	45.29	3.33
395	413	3.327404	TTCCCGGACCTCCTTGGC	61.327	66.667	0.73	0.00	40.22	4.52
478	511	3.741075	CGAATATGGCACTAACAGGAGCA	60.741	47.826	0.00	0.00	0.00	4.26
499	538	0.813184	TCCGCTTACTGGTAACTCCG	59.187	55.000	0.00	0.00	39.52	4.63
553	592	0.179113	CCACACGGGCCATTAAATGC	60.179	55.000	4.39	0.00	0.00	3.56
782	4548	4.202182	CGGACGGAGGGAGTATATGAAAAA	60.202	45.833	0.00	0.00	0.00	1.94
818	4584	4.762765	ACGTCTAGATACATCCATCTCACC	59.237	45.833	0.00	0.00	36.63	4.02
820	4586	8.637196	AAATACGTCTAGATACATCCATCTCA	57.363	34.615	0.00	0.00	36.63	3.27
864	4640	8.801882	ATACTTGTCGGAGAAATGGATAAAAA	57.198	30.769	0.00	0.00	39.69	1.94
865	4641	8.801882	AATACTTGTCGGAGAAATGGATAAAA	57.198	30.769	0.00	0.00	39.69	1.52
866	4642	8.801882	AAATACTTGTCGGAGAAATGGATAAA	57.198	30.769	0.00	0.00	39.69	1.40
867	4643	8.801882	AAAATACTTGTCGGAGAAATGGATAA	57.198	30.769	0.00	0.00	39.69	1.75
868	4644	7.223971	CGAAAATACTTGTCGGAGAAATGGATA	59.776	37.037	0.00	0.00	39.69	2.59
892	4678	3.144506	GGTAATGTATCTCTCCGTCCGA	58.855	50.000	0.00	0.00	0.00	4.55
905	4691	9.892444	TCCAAATAGAGAGGATAAGGTAATGTA	57.108	33.333	0.00	0.00	0.00	2.29
909	6220	9.901172	GTTTTCCAAATAGAGAGGATAAGGTAA	57.099	33.333	0.00	0.00	0.00	2.85
953	6265	2.719046	GTGTTTCTGCGAAAAACATCGG	59.281	45.455	15.14	0.00	45.42	4.18
954	6266	2.719046	GGTGTTTCTGCGAAAAACATCG	59.281	45.455	19.15	0.00	45.42	3.84
1006	6329	7.334090	TCTGAAAGGAATACATGAGAAGAAGG	58.666	38.462	0.00	0.00	0.00	3.46
1213	6543	4.466827	TCTGTGTGGTTGTCAGTACTCTA	58.533	43.478	0.00	0.00	0.00	2.43
1217	6547	4.377021	TCAATCTGTGTGGTTGTCAGTAC	58.623	43.478	0.00	0.00	0.00	2.73
1240	6570	2.238144	AGAACATGCCAGTGCTACATCT	59.762	45.455	0.00	0.00	38.71	2.90
1292	6622	7.041780	CCGAGATTCACCATTATTAAGAGGTTG	60.042	40.741	1.66	0.12	30.44	3.77
1423	6753	9.717942	AGGCTTGCTATATTTAGAGTTGATAAG	57.282	33.333	0.00	0.00	0.00	1.73
1542	6884	8.571336	CAAGGATTATAACATCTTTCATCCCAC	58.429	37.037	0.00	0.00	30.72	4.61
1644	6986	6.267014	CCATTGCTTCTCCAAATCATCCTTAT	59.733	38.462	0.00	0.00	0.00	1.73
1696	7038	3.241995	GCTCGTTAAAGTAACCATGCTCG	60.242	47.826	0.00	0.00	35.27	5.03
2111	7474	7.577303	ACAGTGATATTACATTCAACCTGGAT	58.423	34.615	0.00	0.00	0.00	3.41
2179	7542	3.258971	AGTCTTCCATCTACTTGCAGC	57.741	47.619	0.00	0.00	0.00	5.25
2250	7613	1.064463	CATTAGCCTGGCTTGGAAGGA	60.064	52.381	28.55	3.28	40.44	3.36
2542	7905	2.646121	CAACCACTTTGGGAGGCTC	58.354	57.895	5.78	5.78	43.37	4.70
2696	8059	2.014010	AATCCTGCCTTGCCAAAGAA	57.986	45.000	0.00	0.00	35.19	2.52
3000	8366	4.810790	CGCCATAATTCTATCTTCGTCCT	58.189	43.478	0.00	0.00	0.00	3.85
3195	8568	4.222124	AGAAATCCTGATTACGGCAACT	57.778	40.909	0.00	0.00	0.00	3.16
3237	8610	4.329545	GGTCTCCAAGGTGGCGCA	62.330	66.667	10.83	0.00	37.47	6.09
3427	8800	2.100584	CTCCTCGAGCAGATTGTTAGCT	59.899	50.000	6.99	0.00	42.17	3.32
3448	8821	2.416972	GGTAGACTCGACACAATGGTCC	60.417	54.545	0.00	0.00	34.24	4.46
3449	8822	2.416972	GGGTAGACTCGACACAATGGTC	60.417	54.545	0.00	0.00	34.42	4.02
3450	8823	1.549170	GGGTAGACTCGACACAATGGT	59.451	52.381	0.00	0.00	0.00	3.55
3503	8883	3.256960	GGGTGCCCTCCAAGGTGA	61.257	66.667	0.00	0.00	31.93	4.02
3589	8969	1.521681	GCGAGTGGTGGTATGCTCC	60.522	63.158	0.00	0.00	0.00	4.70
3597	8977	0.321564	TTGATTCCTGCGAGTGGTGG	60.322	55.000	0.00	0.00	0.00	4.61
3625	9005	1.815003	ACAAGCAACATAGCAGGAAGC	59.185	47.619	0.00	0.00	46.19	3.86
3626	9006	5.575957	CATAACAAGCAACATAGCAGGAAG	58.424	41.667	0.00	0.00	36.85	3.46
3661	9041	7.040409	GGTGTTCCAGAAGTTAATGTGAAGATT	60.040	37.037	0.00	0.00	0.00	2.40
3662	9042	6.431234	GGTGTTCCAGAAGTTAATGTGAAGAT	59.569	38.462	0.00	0.00	0.00	2.40
3702	9082	2.153645	CTGTGCCACACAAATCTAGCA	58.846	47.619	0.00	0.00	44.08	3.49
3709	9089	0.754587	TGCCATCTGTGCCACACAAA	60.755	50.000	0.00	0.00	44.08	2.83
3735	9115	4.585955	ATGAGCCATGAGAATGCAAATC	57.414	40.909	0.00	0.00	0.00	2.17
3746	9126	7.392393	CCATTATCTGAACAATATGAGCCATGA	59.608	37.037	0.00	0.00	0.00	3.07
3808	9188	9.276397	CTTTTTAAAGGAAATTTTGCACAACAG	57.724	29.630	3.39	0.00	32.40	3.16
3840	9220	2.229792	TGCAGGTTCTGAATGGTTGAC	58.770	47.619	0.00	0.00	32.44	3.18
3856	9236	4.202070	TGGTGTGATAATCATGCATTGCAG	60.202	41.667	17.52	9.27	43.65	4.41
3863	9243	5.049198	CAGGTACATGGTGTGATAATCATGC	60.049	44.000	0.00	0.00	40.22	4.06
3875	9255	3.903714	TGATCTATCCCAGGTACATGGTG	59.096	47.826	24.06	15.63	38.81	4.17
4126	9506	0.180406	AGGTGTTCACGCTTGAAGGT	59.820	50.000	5.78	0.00	42.60	3.50
4288	9668	5.730296	ACCATCCTTTATAGACAGATCCG	57.270	43.478	0.00	0.00	0.00	4.18
4310	9690	3.125146	GCTGACAATGTACGCTCATCAAA	59.875	43.478	0.00	0.00	0.00	2.69
4382	9762	1.903404	CGTGCCCTTGAAAGCCCTT	60.903	57.895	0.00	0.00	0.00	3.95
4520	9900	3.249799	TGGCTGTAGTTTGACGTCATTTG	59.750	43.478	20.80	6.92	0.00	2.32
4600	9981	5.014202	TCGGCAATAGTAGCAGTATGGATA	58.986	41.667	0.00	0.00	35.86	2.59
4603	9984	3.660501	TCGGCAATAGTAGCAGTATGG	57.339	47.619	0.00	0.00	35.86	2.74
4735	10116	4.154015	TGCAGAAACATCACATAAAGGACG	59.846	41.667	0.00	0.00	0.00	4.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.