Multiple sequence alignment - TraesCS5A01G480600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G480600 chr5A 100.000 6620 0 0 1 6620 653468188 653474807 0.000000e+00 12225
1 TraesCS5A01G480600 chr5A 77.715 1961 296 82 3551 5438 653711957 653713849 0.000000e+00 1070
2 TraesCS5A01G480600 chr5A 95.400 500 20 3 6123 6619 653564416 653563917 0.000000e+00 793
3 TraesCS5A01G480600 chr5D 91.923 4705 200 65 406 5019 526404567 526409182 0.000000e+00 6418
4 TraesCS5A01G480600 chr5D 92.689 848 39 2 4980 5825 526409185 526410011 0.000000e+00 1201
5 TraesCS5A01G480600 chr5D 84.074 967 125 17 3548 4497 526566329 526567283 0.000000e+00 905
6 TraesCS5A01G480600 chr5D 94.433 503 23 3 6123 6620 526410243 526410745 0.000000e+00 769
7 TraesCS5A01G480600 chr5D 92.520 508 26 6 6123 6620 526433450 526432945 0.000000e+00 717
8 TraesCS5A01G480600 chr5D 94.907 432 19 1 6192 6620 526422933 526422502 0.000000e+00 673
9 TraesCS5A01G480600 chr5D 86.799 303 37 3 3266 3566 526565865 526566166 1.060000e-87 335
10 TraesCS5A01G480600 chr5D 93.233 133 7 1 5997 6129 526410075 526410205 1.880000e-45 195
11 TraesCS5A01G480600 chr5B 92.940 4462 196 34 1235 5662 661515828 661520204 0.000000e+00 6384
12 TraesCS5A01G480600 chr5B 79.233 1382 200 60 3548 4885 662029858 662031196 0.000000e+00 881
13 TraesCS5A01G480600 chr5B 86.969 706 38 23 400 1074 661514985 661515667 0.000000e+00 745
14 TraesCS5A01G480600 chr5B 92.549 510 26 5 6123 6620 661523923 661524432 0.000000e+00 721
15 TraesCS5A01G480600 chr5B 92.008 488 30 1 6142 6620 661613171 661612684 0.000000e+00 676
16 TraesCS5A01G480600 chr5B 78.095 630 111 16 3744 4367 419845539 419844931 2.250000e-99 374
17 TraesCS5A01G480600 chr5B 93.421 152 6 3 5654 5801 661523521 661523672 8.640000e-54 222
18 TraesCS5A01G480600 chr3D 90.950 442 31 3 6178 6619 496767521 496767953 2.660000e-163 586
19 TraesCS5A01G480600 chr3A 90.045 442 35 3 6178 6619 638015558 638015990 1.250000e-156 564
20 TraesCS5A01G480600 chr2D 82.864 426 64 4 6184 6609 376355804 376356220 2.250000e-99 374


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G480600 chr5A 653468188 653474807 6619 False 12225.00 12225 100.00000 1 6620 1 chr5A.!!$F1 6619
1 TraesCS5A01G480600 chr5A 653711957 653713849 1892 False 1070.00 1070 77.71500 3551 5438 1 chr5A.!!$F2 1887
2 TraesCS5A01G480600 chr5D 526404567 526410745 6178 False 2145.75 6418 93.06950 406 6620 4 chr5D.!!$F1 6214
3 TraesCS5A01G480600 chr5D 526432945 526433450 505 True 717.00 717 92.52000 6123 6620 1 chr5D.!!$R2 497
4 TraesCS5A01G480600 chr5D 526565865 526567283 1418 False 620.00 905 85.43650 3266 4497 2 chr5D.!!$F2 1231
5 TraesCS5A01G480600 chr5B 661514985 661524432 9447 False 2018.00 6384 91.46975 400 6620 4 chr5B.!!$F2 6220
6 TraesCS5A01G480600 chr5B 662029858 662031196 1338 False 881.00 881 79.23300 3548 4885 1 chr5B.!!$F1 1337
7 TraesCS5A01G480600 chr5B 419844931 419845539 608 True 374.00 374 78.09500 3744 4367 1 chr5B.!!$R1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.026803 GCCAATGATTGTCGCGACTC 59.973 55.0 36.27 27.09 0.00 3.36 F
813 845 0.035343 GGCCGCTATTTATCCCCCTC 60.035 60.0 0.00 0.00 0.00 4.30 F
1210 1259 0.034896 CCATTCCCGGTTCCCTATCG 59.965 60.0 0.00 0.00 0.00 2.92 F
1341 1413 0.035820 GTGATTCGGTTGGTGGCCTA 60.036 55.0 3.32 0.00 0.00 3.93 F
2471 2584 1.061546 TTCTTTCCCAGTAACGGGCT 58.938 50.0 0.00 0.00 46.92 5.19 F
3651 3945 0.606401 AGTCCAATGGTTCGCACCTG 60.606 55.0 5.66 0.00 44.61 4.00 F
4013 4358 1.048724 TCCTTGATGTAGGGGGCTCG 61.049 60.0 0.00 0.00 35.90 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1114 1163 0.463833 AATCGGCCGAAACCTCATCC 60.464 55.000 34.66 0.0 0.00 3.51 R
1989 2078 0.546122 TCAACAACAGGTGGTCAGCT 59.454 50.000 0.00 0.0 40.20 4.24 R
2617 2730 2.563798 CGTTGCCCACTTGCCATGT 61.564 57.895 0.00 0.0 0.00 3.21 R
2889 3002 2.681976 GCCATTGCAGTCTGTGGTAGAT 60.682 50.000 9.16 0.0 36.07 1.98 R
4389 4759 0.108186 TGTGCAGAATACTGGCTCGG 60.108 55.000 0.00 0.0 43.62 4.63 R
5142 5618 0.116342 TCTCCAGAAGCACTACCCCA 59.884 55.000 0.00 0.0 0.00 4.96 R
5972 9777 0.031585 GTTCGGTTTGGTGGGCTTTC 59.968 55.000 0.00 0.0 0.00 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.600493 CGGTACTTCCTCTCGAACG 57.400 57.895 0.00 0.00 0.00 3.95
19 20 0.801251 CGGTACTTCCTCTCGAACGT 59.199 55.000 0.00 0.00 0.00 3.99
20 21 1.198637 CGGTACTTCCTCTCGAACGTT 59.801 52.381 0.00 0.00 0.00 3.99
21 22 2.416547 CGGTACTTCCTCTCGAACGTTA 59.583 50.000 0.00 0.00 0.00 3.18
22 23 3.484886 CGGTACTTCCTCTCGAACGTTAG 60.485 52.174 0.00 0.00 0.00 2.34
23 24 3.181502 GGTACTTCCTCTCGAACGTTAGG 60.182 52.174 0.00 4.39 0.00 2.69
24 25 2.787994 ACTTCCTCTCGAACGTTAGGA 58.212 47.619 12.53 12.53 36.34 2.94
25 26 3.354467 ACTTCCTCTCGAACGTTAGGAT 58.646 45.455 16.33 2.43 37.94 3.24
26 27 3.377798 ACTTCCTCTCGAACGTTAGGATC 59.622 47.826 16.33 0.00 37.94 3.36
27 28 3.278668 TCCTCTCGAACGTTAGGATCT 57.721 47.619 12.53 0.00 33.18 2.75
28 29 2.943690 TCCTCTCGAACGTTAGGATCTG 59.056 50.000 12.53 0.00 33.18 2.90
29 30 2.683867 CCTCTCGAACGTTAGGATCTGT 59.316 50.000 8.88 0.00 0.00 3.41
30 31 3.487711 CCTCTCGAACGTTAGGATCTGTG 60.488 52.174 8.88 0.00 0.00 3.66
31 32 2.159421 TCTCGAACGTTAGGATCTGTGC 60.159 50.000 0.00 0.00 0.00 4.57
32 33 1.542472 TCGAACGTTAGGATCTGTGCA 59.458 47.619 0.00 0.00 0.00 4.57
33 34 1.920574 CGAACGTTAGGATCTGTGCAG 59.079 52.381 0.00 0.00 0.00 4.41
34 35 2.271800 GAACGTTAGGATCTGTGCAGG 58.728 52.381 0.00 0.00 0.00 4.85
35 36 1.557099 ACGTTAGGATCTGTGCAGGA 58.443 50.000 0.00 0.00 0.00 3.86
36 37 1.478510 ACGTTAGGATCTGTGCAGGAG 59.521 52.381 0.00 0.00 0.00 3.69
37 38 1.751351 CGTTAGGATCTGTGCAGGAGA 59.249 52.381 0.00 0.00 0.00 3.71
38 39 2.223688 CGTTAGGATCTGTGCAGGAGAG 60.224 54.545 0.00 0.00 0.00 3.20
39 40 3.027412 GTTAGGATCTGTGCAGGAGAGA 58.973 50.000 0.00 0.00 0.00 3.10
40 41 2.244486 AGGATCTGTGCAGGAGAGAA 57.756 50.000 0.00 0.00 0.00 2.87
41 42 2.761809 AGGATCTGTGCAGGAGAGAAT 58.238 47.619 0.00 0.00 0.00 2.40
42 43 2.699846 AGGATCTGTGCAGGAGAGAATC 59.300 50.000 0.00 0.00 0.00 2.52
43 44 2.433604 GGATCTGTGCAGGAGAGAATCA 59.566 50.000 0.00 0.00 37.82 2.57
44 45 3.118482 GGATCTGTGCAGGAGAGAATCAA 60.118 47.826 0.00 0.00 37.82 2.57
45 46 4.444591 GGATCTGTGCAGGAGAGAATCAAT 60.445 45.833 0.00 0.00 37.82 2.57
46 47 3.870274 TCTGTGCAGGAGAGAATCAATG 58.130 45.455 0.00 0.00 37.82 2.82
47 48 2.355132 CTGTGCAGGAGAGAATCAATGC 59.645 50.000 0.00 0.00 40.68 3.56
48 49 2.290450 TGTGCAGGAGAGAATCAATGCA 60.290 45.455 0.00 0.00 44.98 3.96
49 50 2.362736 TGCAGGAGAGAATCAATGCAC 58.637 47.619 0.00 0.00 43.37 4.57
50 51 1.329906 GCAGGAGAGAATCAATGCACG 59.670 52.381 0.00 0.00 40.25 5.34
51 52 2.897436 CAGGAGAGAATCAATGCACGA 58.103 47.619 0.00 0.00 37.82 4.35
52 53 2.864946 CAGGAGAGAATCAATGCACGAG 59.135 50.000 0.00 0.00 37.82 4.18
53 54 2.762887 AGGAGAGAATCAATGCACGAGA 59.237 45.455 0.00 0.00 37.82 4.04
54 55 3.196469 AGGAGAGAATCAATGCACGAGAA 59.804 43.478 0.00 0.00 37.82 2.87
55 56 3.308323 GGAGAGAATCAATGCACGAGAAC 59.692 47.826 0.00 0.00 37.82 3.01
56 57 4.180057 GAGAGAATCAATGCACGAGAACT 58.820 43.478 0.00 0.00 37.82 3.01
57 58 3.931468 AGAGAATCAATGCACGAGAACTG 59.069 43.478 0.00 0.00 37.82 3.16
58 59 3.005554 AGAATCAATGCACGAGAACTGG 58.994 45.455 0.00 0.00 0.00 4.00
59 60 2.768253 ATCAATGCACGAGAACTGGA 57.232 45.000 0.00 0.00 0.00 3.86
60 61 2.768253 TCAATGCACGAGAACTGGAT 57.232 45.000 0.00 0.00 0.00 3.41
61 62 2.621338 TCAATGCACGAGAACTGGATC 58.379 47.619 0.00 0.00 0.00 3.36
62 63 1.325640 CAATGCACGAGAACTGGATCG 59.674 52.381 0.00 0.00 44.36 3.69
63 64 0.179100 ATGCACGAGAACTGGATCGG 60.179 55.000 0.00 0.00 43.12 4.18
64 65 1.248101 TGCACGAGAACTGGATCGGA 61.248 55.000 0.00 0.00 43.12 4.55
65 66 0.526524 GCACGAGAACTGGATCGGAG 60.527 60.000 0.00 0.00 43.12 4.63
66 67 0.101399 CACGAGAACTGGATCGGAGG 59.899 60.000 0.00 0.00 43.12 4.30
67 68 1.038130 ACGAGAACTGGATCGGAGGG 61.038 60.000 0.00 0.00 43.12 4.30
68 69 0.752009 CGAGAACTGGATCGGAGGGA 60.752 60.000 0.00 0.00 35.33 4.20
69 70 1.036707 GAGAACTGGATCGGAGGGAG 58.963 60.000 0.00 0.00 0.00 4.30
70 71 0.397816 AGAACTGGATCGGAGGGAGG 60.398 60.000 0.00 0.00 0.00 4.30
71 72 2.034048 GAACTGGATCGGAGGGAGGC 62.034 65.000 0.00 0.00 0.00 4.70
72 73 3.610669 CTGGATCGGAGGGAGGCG 61.611 72.222 0.00 0.00 0.00 5.52
82 83 4.404098 GGGAGGCGGCGAGGAAAA 62.404 66.667 12.98 0.00 0.00 2.29
83 84 3.125573 GGAGGCGGCGAGGAAAAC 61.126 66.667 12.98 0.00 0.00 2.43
84 85 3.488090 GAGGCGGCGAGGAAAACG 61.488 66.667 12.98 0.00 0.00 3.60
91 92 2.867472 CGAGGAAAACGCGCCAAT 59.133 55.556 5.73 0.00 35.15 3.16
92 93 1.511887 CGAGGAAAACGCGCCAATG 60.512 57.895 5.73 0.00 35.15 2.82
93 94 1.873165 GAGGAAAACGCGCCAATGA 59.127 52.632 5.73 0.00 0.00 2.57
94 95 0.451783 GAGGAAAACGCGCCAATGAT 59.548 50.000 5.73 0.00 0.00 2.45
95 96 0.887933 AGGAAAACGCGCCAATGATT 59.112 45.000 5.73 0.00 0.00 2.57
96 97 0.991344 GGAAAACGCGCCAATGATTG 59.009 50.000 5.73 0.00 0.00 2.67
97 98 1.668628 GGAAAACGCGCCAATGATTGT 60.669 47.619 5.73 0.00 0.00 2.71
98 99 1.648681 GAAAACGCGCCAATGATTGTC 59.351 47.619 5.73 0.00 0.00 3.18
99 100 0.454285 AAACGCGCCAATGATTGTCG 60.454 50.000 5.73 4.03 0.00 4.35
100 101 2.648724 CGCGCCAATGATTGTCGC 60.649 61.111 21.78 21.78 42.05 5.19
101 102 2.648724 GCGCCAATGATTGTCGCG 60.649 61.111 17.68 18.79 41.91 5.87
102 103 3.088914 CGCCAATGATTGTCGCGA 58.911 55.556 19.32 3.71 41.67 5.87
103 104 1.296867 CGCCAATGATTGTCGCGAC 60.297 57.895 31.66 31.66 41.67 5.19
104 105 1.695893 CGCCAATGATTGTCGCGACT 61.696 55.000 36.27 20.46 41.67 4.18
105 106 0.026803 GCCAATGATTGTCGCGACTC 59.973 55.000 36.27 27.09 0.00 3.36
106 107 0.652592 CCAATGATTGTCGCGACTCC 59.347 55.000 36.27 24.85 0.00 3.85
107 108 0.298707 CAATGATTGTCGCGACTCCG 59.701 55.000 36.27 15.68 39.16 4.63
108 109 0.108804 AATGATTGTCGCGACTCCGT 60.109 50.000 36.27 23.23 38.24 4.69
109 110 0.525668 ATGATTGTCGCGACTCCGTC 60.526 55.000 36.27 26.48 38.24 4.79
119 120 3.859650 GACTCCGTCGAAACAGACA 57.140 52.632 0.00 0.00 40.98 3.41
120 121 1.406447 GACTCCGTCGAAACAGACAC 58.594 55.000 0.00 0.00 40.98 3.67
121 122 0.742505 ACTCCGTCGAAACAGACACA 59.257 50.000 0.00 0.00 40.98 3.72
122 123 1.340248 ACTCCGTCGAAACAGACACAT 59.660 47.619 0.00 0.00 40.98 3.21
123 124 1.986378 CTCCGTCGAAACAGACACATC 59.014 52.381 0.00 0.00 40.98 3.06
124 125 0.708370 CCGTCGAAACAGACACATCG 59.292 55.000 0.00 0.00 40.98 3.84
125 126 1.664874 CCGTCGAAACAGACACATCGA 60.665 52.381 0.00 0.00 41.53 3.59
126 127 1.644295 CGTCGAAACAGACACATCGAG 59.356 52.381 0.00 0.00 44.04 4.04
127 128 2.664698 CGTCGAAACAGACACATCGAGA 60.665 50.000 0.00 0.00 44.04 4.04
128 129 3.502920 GTCGAAACAGACACATCGAGAT 58.497 45.455 0.00 0.00 44.04 2.75
129 130 3.544285 GTCGAAACAGACACATCGAGATC 59.456 47.826 0.00 0.00 44.04 2.75
130 131 2.854777 CGAAACAGACACATCGAGATCC 59.145 50.000 0.00 0.00 37.48 3.36
131 132 2.568696 AACAGACACATCGAGATCCG 57.431 50.000 0.00 0.00 40.25 4.18
132 133 1.464734 ACAGACACATCGAGATCCGT 58.535 50.000 0.00 0.00 39.75 4.69
133 134 2.640184 ACAGACACATCGAGATCCGTA 58.360 47.619 0.00 0.00 39.75 4.02
134 135 2.355132 ACAGACACATCGAGATCCGTAC 59.645 50.000 0.00 0.00 39.75 3.67
135 136 1.948145 AGACACATCGAGATCCGTACC 59.052 52.381 0.00 0.00 39.75 3.34
136 137 0.661552 ACACATCGAGATCCGTACCG 59.338 55.000 0.00 0.00 39.75 4.02
137 138 0.942252 CACATCGAGATCCGTACCGA 59.058 55.000 0.00 0.00 39.75 4.69
138 139 0.942962 ACATCGAGATCCGTACCGAC 59.057 55.000 0.00 0.00 39.75 4.79
147 148 4.125097 CGTACCGACGTTTGCCGC 62.125 66.667 0.00 0.00 44.31 6.53
148 149 4.125097 GTACCGACGTTTGCCGCG 62.125 66.667 0.00 0.00 41.42 6.46
156 157 4.090057 GTTTGCCGCGGCTCTGTC 62.090 66.667 45.79 27.96 42.51 3.51
181 182 4.056125 CGCCGACACAGCAGGAGA 62.056 66.667 0.00 0.00 0.00 3.71
182 183 2.343758 GCCGACACAGCAGGAGAA 59.656 61.111 0.00 0.00 0.00 2.87
183 184 1.301716 GCCGACACAGCAGGAGAAA 60.302 57.895 0.00 0.00 0.00 2.52
184 185 1.569479 GCCGACACAGCAGGAGAAAC 61.569 60.000 0.00 0.00 0.00 2.78
185 186 1.284982 CCGACACAGCAGGAGAAACG 61.285 60.000 0.00 0.00 0.00 3.60
186 187 1.862806 GACACAGCAGGAGAAACGC 59.137 57.895 0.00 0.00 0.00 4.84
187 188 0.880278 GACACAGCAGGAGAAACGCA 60.880 55.000 0.00 0.00 0.00 5.24
188 189 0.250467 ACACAGCAGGAGAAACGCAT 60.250 50.000 0.00 0.00 0.00 4.73
189 190 0.445436 CACAGCAGGAGAAACGCATC 59.555 55.000 0.00 0.00 0.00 3.91
190 191 1.016130 ACAGCAGGAGAAACGCATCG 61.016 55.000 0.00 0.00 0.00 3.84
191 192 1.448540 AGCAGGAGAAACGCATCGG 60.449 57.895 0.00 0.00 0.00 4.18
192 193 1.741770 GCAGGAGAAACGCATCGGT 60.742 57.895 0.00 0.00 0.00 4.69
193 194 1.970917 GCAGGAGAAACGCATCGGTG 61.971 60.000 0.00 0.00 0.00 4.94
219 220 3.195698 GACCATGTCGAAGCCCGC 61.196 66.667 0.00 0.00 38.37 6.13
222 223 3.853330 CATGTCGAAGCCCGCGTG 61.853 66.667 4.92 0.00 38.37 5.34
223 224 4.063967 ATGTCGAAGCCCGCGTGA 62.064 61.111 4.92 0.00 38.37 4.35
256 257 3.036084 CGTGTTTGTCGCGGCTCT 61.036 61.111 13.81 0.00 44.94 4.09
257 258 2.551270 GTGTTTGTCGCGGCTCTG 59.449 61.111 13.81 0.00 0.00 3.35
258 259 2.108157 TGTTTGTCGCGGCTCTGT 59.892 55.556 13.81 0.00 0.00 3.41
259 260 1.954146 TGTTTGTCGCGGCTCTGTC 60.954 57.895 13.81 0.00 0.00 3.51
260 261 2.733218 TTTGTCGCGGCTCTGTCG 60.733 61.111 13.81 0.00 0.00 4.35
261 262 3.202216 TTTGTCGCGGCTCTGTCGA 62.202 57.895 13.81 0.00 29.41 4.20
262 263 2.686956 TTTGTCGCGGCTCTGTCGAA 62.687 55.000 13.81 0.00 33.81 3.71
263 264 2.430244 GTCGCGGCTCTGTCGAAA 60.430 61.111 1.90 0.00 33.81 3.46
264 265 2.430244 TCGCGGCTCTGTCGAAAC 60.430 61.111 6.13 0.00 29.41 2.78
265 266 3.479269 CGCGGCTCTGTCGAAACC 61.479 66.667 0.00 0.00 29.41 3.27
266 267 3.479269 GCGGCTCTGTCGAAACCG 61.479 66.667 8.07 8.07 40.23 4.44
267 268 3.479269 CGGCTCTGTCGAAACCGC 61.479 66.667 0.00 0.00 33.76 5.68
268 269 2.357034 GGCTCTGTCGAAACCGCA 60.357 61.111 0.00 0.00 0.00 5.69
269 270 2.668280 GGCTCTGTCGAAACCGCAC 61.668 63.158 0.00 0.00 0.00 5.34
270 271 3.000080 GCTCTGTCGAAACCGCACG 62.000 63.158 0.00 0.00 0.00 5.34
271 272 1.371267 CTCTGTCGAAACCGCACGA 60.371 57.895 0.00 0.00 36.18 4.35
272 273 1.337817 CTCTGTCGAAACCGCACGAG 61.338 60.000 0.00 0.00 39.16 4.18
273 274 3.000080 CTGTCGAAACCGCACGAGC 62.000 63.158 0.00 0.00 39.16 5.03
274 275 3.033764 GTCGAAACCGCACGAGCA 61.034 61.111 5.50 0.00 42.27 4.26
275 276 3.033764 TCGAAACCGCACGAGCAC 61.034 61.111 5.50 0.00 42.27 4.40
276 277 4.072088 CGAAACCGCACGAGCACC 62.072 66.667 5.50 0.00 42.27 5.01
277 278 3.723348 GAAACCGCACGAGCACCC 61.723 66.667 5.50 0.00 42.27 4.61
278 279 4.555709 AAACCGCACGAGCACCCA 62.556 61.111 5.50 0.00 42.27 4.51
279 280 3.842925 AAACCGCACGAGCACCCAT 62.843 57.895 5.50 0.00 42.27 4.00
280 281 4.760047 ACCGCACGAGCACCCATC 62.760 66.667 5.50 0.00 42.27 3.51
282 283 4.758251 CGCACGAGCACCCATCCA 62.758 66.667 5.50 0.00 42.27 3.41
283 284 2.124570 GCACGAGCACCCATCCAT 60.125 61.111 0.00 0.00 41.58 3.41
284 285 1.750399 GCACGAGCACCCATCCATT 60.750 57.895 0.00 0.00 41.58 3.16
285 286 1.718757 GCACGAGCACCCATCCATTC 61.719 60.000 0.00 0.00 41.58 2.67
286 287 0.392863 CACGAGCACCCATCCATTCA 60.393 55.000 0.00 0.00 0.00 2.57
287 288 0.392998 ACGAGCACCCATCCATTCAC 60.393 55.000 0.00 0.00 0.00 3.18
288 289 0.392863 CGAGCACCCATCCATTCACA 60.393 55.000 0.00 0.00 0.00 3.58
289 290 1.098050 GAGCACCCATCCATTCACAC 58.902 55.000 0.00 0.00 0.00 3.82
290 291 0.405198 AGCACCCATCCATTCACACA 59.595 50.000 0.00 0.00 0.00 3.72
291 292 1.203038 AGCACCCATCCATTCACACAA 60.203 47.619 0.00 0.00 0.00 3.33
292 293 1.203052 GCACCCATCCATTCACACAAG 59.797 52.381 0.00 0.00 0.00 3.16
293 294 2.794103 CACCCATCCATTCACACAAGA 58.206 47.619 0.00 0.00 0.00 3.02
294 295 2.751259 CACCCATCCATTCACACAAGAG 59.249 50.000 0.00 0.00 0.00 2.85
295 296 2.644299 ACCCATCCATTCACACAAGAGA 59.356 45.455 0.00 0.00 0.00 3.10
296 297 3.276857 CCCATCCATTCACACAAGAGAG 58.723 50.000 0.00 0.00 0.00 3.20
297 298 3.054875 CCCATCCATTCACACAAGAGAGA 60.055 47.826 0.00 0.00 0.00 3.10
298 299 3.937706 CCATCCATTCACACAAGAGAGAC 59.062 47.826 0.00 0.00 0.00 3.36
299 300 3.685139 TCCATTCACACAAGAGAGACC 57.315 47.619 0.00 0.00 0.00 3.85
300 301 2.303022 TCCATTCACACAAGAGAGACCC 59.697 50.000 0.00 0.00 0.00 4.46
301 302 2.038952 CCATTCACACAAGAGAGACCCA 59.961 50.000 0.00 0.00 0.00 4.51
302 303 3.307975 CCATTCACACAAGAGAGACCCAT 60.308 47.826 0.00 0.00 0.00 4.00
303 304 4.080919 CCATTCACACAAGAGAGACCCATA 60.081 45.833 0.00 0.00 0.00 2.74
304 305 5.491070 CATTCACACAAGAGAGACCCATAA 58.509 41.667 0.00 0.00 0.00 1.90
305 306 5.560722 TTCACACAAGAGAGACCCATAAA 57.439 39.130 0.00 0.00 0.00 1.40
306 307 5.560722 TCACACAAGAGAGACCCATAAAA 57.439 39.130 0.00 0.00 0.00 1.52
307 308 5.935945 TCACACAAGAGAGACCCATAAAAA 58.064 37.500 0.00 0.00 0.00 1.94
332 333 4.234530 AGAGCAAAACTTCTGTCAATGC 57.765 40.909 0.00 0.00 32.63 3.56
333 334 3.005155 AGAGCAAAACTTCTGTCAATGCC 59.995 43.478 0.00 0.00 32.78 4.40
334 335 2.036346 AGCAAAACTTCTGTCAATGCCC 59.964 45.455 0.00 0.00 32.78 5.36
335 336 2.224018 GCAAAACTTCTGTCAATGCCCA 60.224 45.455 0.00 0.00 0.00 5.36
336 337 3.555586 GCAAAACTTCTGTCAATGCCCAT 60.556 43.478 0.00 0.00 0.00 4.00
337 338 4.321899 GCAAAACTTCTGTCAATGCCCATA 60.322 41.667 0.00 0.00 0.00 2.74
338 339 5.625197 GCAAAACTTCTGTCAATGCCCATAT 60.625 40.000 0.00 0.00 0.00 1.78
339 340 5.587388 AAACTTCTGTCAATGCCCATATG 57.413 39.130 0.00 0.00 0.00 1.78
340 341 2.954318 ACTTCTGTCAATGCCCATATGC 59.046 45.455 0.00 0.00 0.00 3.14
341 342 2.732844 TCTGTCAATGCCCATATGCA 57.267 45.000 0.00 0.00 46.94 3.96
342 343 2.578786 TCTGTCAATGCCCATATGCAG 58.421 47.619 0.00 0.00 45.93 4.41
343 344 2.092267 TCTGTCAATGCCCATATGCAGT 60.092 45.455 0.00 0.00 45.93 4.40
344 345 2.691526 CTGTCAATGCCCATATGCAGTT 59.308 45.455 0.00 0.00 45.93 3.16
345 346 3.098377 TGTCAATGCCCATATGCAGTTT 58.902 40.909 0.00 0.00 45.93 2.66
346 347 3.514706 TGTCAATGCCCATATGCAGTTTT 59.485 39.130 0.00 0.00 45.93 2.43
347 348 4.020396 TGTCAATGCCCATATGCAGTTTTT 60.020 37.500 0.00 0.00 45.93 1.94
367 368 5.769484 TTTTTCAACGTTATTAGGTGGCA 57.231 34.783 0.00 0.00 0.00 4.92
368 369 5.769484 TTTTCAACGTTATTAGGTGGCAA 57.231 34.783 0.00 0.00 0.00 4.52
369 370 4.752661 TTCAACGTTATTAGGTGGCAAC 57.247 40.909 0.00 0.00 0.00 4.17
382 383 4.383602 GCAACAACGCGCACGGAT 62.384 61.111 5.73 0.00 46.04 4.18
383 384 2.499520 CAACAACGCGCACGGATG 60.500 61.111 5.73 0.00 46.04 3.51
384 385 2.970324 AACAACGCGCACGGATGT 60.970 55.556 5.73 0.00 46.04 3.06
421 423 1.798223 CGCACACGGATAATATGGTGG 59.202 52.381 6.16 0.00 34.78 4.61
424 426 3.057019 CACACGGATAATATGGTGGTCG 58.943 50.000 6.16 0.00 34.78 4.79
428 430 2.670229 CGGATAATATGGTGGTCGGTCG 60.670 54.545 0.00 0.00 0.00 4.79
431 433 1.187974 AATATGGTGGTCGGTCGTCA 58.812 50.000 0.00 0.00 0.00 4.35
434 436 1.956629 ATGGTGGTCGGTCGTCATCC 61.957 60.000 0.00 0.00 0.00 3.51
438 440 1.227263 GGTCGGTCGTCATCCCATG 60.227 63.158 0.00 0.00 0.00 3.66
439 441 1.227263 GTCGGTCGTCATCCCATGG 60.227 63.158 4.14 4.14 0.00 3.66
440 442 2.108976 CGGTCGTCATCCCATGGG 59.891 66.667 26.30 26.30 0.00 4.00
443 445 1.227263 GTCGTCATCCCATGGGTCG 60.227 63.158 30.28 26.01 36.47 4.79
475 477 1.287739 TCATTCATTTCACCCCCTCCC 59.712 52.381 0.00 0.00 0.00 4.30
502 508 2.187896 CTCCGGCGGTAAAAAGGGGA 62.188 60.000 27.32 0.43 0.00 4.81
568 575 4.796495 CCTCCCCGCTTTTCCCCG 62.796 72.222 0.00 0.00 0.00 5.73
635 648 4.984689 GCCTACCGCTCGCGCTAG 62.985 72.222 5.56 4.85 38.24 3.42
652 665 4.487412 GTCGCTACCGTCCACCCG 62.487 72.222 0.00 0.00 35.54 5.28
752 776 2.815647 CGCTTTCGCCCACTCTCC 60.816 66.667 0.00 0.00 0.00 3.71
808 840 2.388232 CCGCGGCCGCTATTTATCC 61.388 63.158 43.60 15.84 39.32 2.59
812 844 1.838073 CGGCCGCTATTTATCCCCCT 61.838 60.000 14.67 0.00 0.00 4.79
813 845 0.035343 GGCCGCTATTTATCCCCCTC 60.035 60.000 0.00 0.00 0.00 4.30
814 846 0.035343 GCCGCTATTTATCCCCCTCC 60.035 60.000 0.00 0.00 0.00 4.30
815 847 1.657804 CCGCTATTTATCCCCCTCCT 58.342 55.000 0.00 0.00 0.00 3.69
851 883 3.862991 GAGGAACCCTAGCCCGCC 61.863 72.222 0.00 0.00 31.76 6.13
868 912 4.530857 CCGCTCGCCCGAATTCCT 62.531 66.667 0.00 0.00 0.00 3.36
951 998 1.004679 GCTCCGTTTGGTCCGGTAA 60.005 57.895 0.00 0.00 45.63 2.85
961 1008 0.535553 GGTCCGGTAAGGTTGTTGCA 60.536 55.000 0.00 0.00 41.99 4.08
971 1018 0.175531 GGTTGTTGCAGTTGCTTGGT 59.824 50.000 5.62 0.00 42.66 3.67
1083 1131 1.002792 CTCTTCTCCTCCCCTGGCT 59.997 63.158 0.00 0.00 0.00 4.75
1085 1133 0.178861 TCTTCTCCTCCCCTGGCTTT 60.179 55.000 0.00 0.00 0.00 3.51
1087 1135 2.044551 CTCCTCCCCTGGCTTTGC 60.045 66.667 0.00 0.00 0.00 3.68
1090 1138 4.033776 CTCCCCTGGCTTTGCGGA 62.034 66.667 0.00 0.00 0.00 5.54
1094 1142 1.543944 CCCCTGGCTTTGCGGATTTT 61.544 55.000 0.00 0.00 0.00 1.82
1095 1143 0.321346 CCCTGGCTTTGCGGATTTTT 59.679 50.000 0.00 0.00 0.00 1.94
1101 1149 2.612721 GGCTTTGCGGATTTTTGGTGAT 60.613 45.455 0.00 0.00 0.00 3.06
1146 1195 1.448540 CCGATTCCTGCTTGCGAGT 60.449 57.895 2.14 0.00 0.00 4.18
1148 1197 0.095935 CGATTCCTGCTTGCGAGTTG 59.904 55.000 2.14 0.00 0.00 3.16
1158 1207 4.704833 GCGAGTTGCAGGGCTCCA 62.705 66.667 0.00 0.00 45.45 3.86
1159 1208 2.032528 CGAGTTGCAGGGCTCCAA 59.967 61.111 8.70 0.00 0.00 3.53
1160 1209 2.037136 CGAGTTGCAGGGCTCCAAG 61.037 63.158 8.70 0.00 0.00 3.61
1161 1210 1.676967 GAGTTGCAGGGCTCCAAGG 60.677 63.158 4.32 0.00 0.00 3.61
1162 1211 2.116125 GTTGCAGGGCTCCAAGGT 59.884 61.111 0.00 0.00 0.00 3.50
1163 1212 1.973812 GTTGCAGGGCTCCAAGGTC 60.974 63.158 0.00 0.00 0.00 3.85
1164 1213 2.156098 TTGCAGGGCTCCAAGGTCT 61.156 57.895 0.00 0.00 0.00 3.85
1170 1219 2.529744 GGCTCCAAGGTCTGGTGGT 61.530 63.158 0.00 0.00 46.51 4.16
1174 1223 0.401395 TCCAAGGTCTGGTGGTTCCT 60.401 55.000 0.00 0.00 46.51 3.36
1184 1233 1.626321 TGGTGGTTCCTAGATGCGAAA 59.374 47.619 0.00 0.00 37.07 3.46
1186 1235 2.678336 GGTGGTTCCTAGATGCGAAAAG 59.322 50.000 0.00 0.00 0.00 2.27
1199 1248 0.109319 CGAAAAGCAACCCATTCCCG 60.109 55.000 0.00 0.00 0.00 5.14
1200 1249 0.246360 GAAAAGCAACCCATTCCCGG 59.754 55.000 0.00 0.00 0.00 5.73
1203 1252 0.898326 AAGCAACCCATTCCCGGTTC 60.898 55.000 0.00 0.00 41.78 3.62
1204 1253 2.348104 GCAACCCATTCCCGGTTCC 61.348 63.158 0.00 0.00 41.78 3.62
1205 1254 1.680989 CAACCCATTCCCGGTTCCC 60.681 63.158 0.00 0.00 41.78 3.97
1207 1256 0.550638 AACCCATTCCCGGTTCCCTA 60.551 55.000 0.00 0.00 39.46 3.53
1209 1258 0.400594 CCCATTCCCGGTTCCCTATC 59.599 60.000 0.00 0.00 0.00 2.08
1210 1259 0.034896 CCATTCCCGGTTCCCTATCG 59.965 60.000 0.00 0.00 0.00 2.92
1211 1260 1.045407 CATTCCCGGTTCCCTATCGA 58.955 55.000 0.00 0.00 0.00 3.59
1212 1261 1.623811 CATTCCCGGTTCCCTATCGAT 59.376 52.381 2.16 2.16 0.00 3.59
1213 1262 1.797320 TTCCCGGTTCCCTATCGATT 58.203 50.000 1.71 0.00 0.00 3.34
1216 1265 2.629617 TCCCGGTTCCCTATCGATTTAC 59.370 50.000 1.71 0.00 0.00 2.01
1217 1266 2.366266 CCCGGTTCCCTATCGATTTACA 59.634 50.000 1.71 0.00 0.00 2.41
1218 1267 3.007614 CCCGGTTCCCTATCGATTTACAT 59.992 47.826 1.71 0.00 0.00 2.29
1219 1268 3.994392 CCGGTTCCCTATCGATTTACATG 59.006 47.826 1.71 0.00 0.00 3.21
1220 1269 4.262292 CCGGTTCCCTATCGATTTACATGA 60.262 45.833 1.71 0.00 0.00 3.07
1222 1271 5.577164 CGGTTCCCTATCGATTTACATGATC 59.423 44.000 1.71 0.00 0.00 2.92
1223 1272 6.464222 GGTTCCCTATCGATTTACATGATCA 58.536 40.000 1.71 0.00 0.00 2.92
1226 1275 9.003658 GTTCCCTATCGATTTACATGATCATTT 57.996 33.333 5.16 1.90 0.00 2.32
1227 1276 8.777865 TCCCTATCGATTTACATGATCATTTC 57.222 34.615 5.16 0.00 0.00 2.17
1228 1277 7.545615 TCCCTATCGATTTACATGATCATTTCG 59.454 37.037 5.16 9.84 0.00 3.46
1229 1278 7.331934 CCCTATCGATTTACATGATCATTTCGT 59.668 37.037 5.16 3.88 0.00 3.85
1234 1291 8.088365 TCGATTTACATGATCATTTCGTAGGAT 58.912 33.333 5.16 4.38 0.00 3.24
1264 1336 3.516981 AATCGGAGATATCAGCGGATG 57.483 47.619 9.82 0.00 45.12 3.51
1285 1357 2.731217 CTTATTGTGCGCAATTAGCCC 58.269 47.619 28.90 0.00 42.19 5.19
1290 1362 1.134250 TGTGCGCAATTAGCCCTATGA 60.134 47.619 14.00 0.00 41.38 2.15
1291 1363 2.154462 GTGCGCAATTAGCCCTATGAT 58.846 47.619 14.00 0.00 41.38 2.45
1319 1391 4.673761 GCGAAAGGCTTAACTTGTTTGTAC 59.326 41.667 0.00 0.00 39.11 2.90
1341 1413 0.035820 GTGATTCGGTTGGTGGCCTA 60.036 55.000 3.32 0.00 0.00 3.93
1347 1419 1.074084 TCGGTTGGTGGCCTATTTTGA 59.926 47.619 3.32 0.00 0.00 2.69
1359 1431 4.336889 CCTATTTTGAGGCGATCCAGTA 57.663 45.455 0.00 0.00 33.74 2.74
1495 1573 3.922171 CCTTGTGAGGCTTCTTAGGAT 57.078 47.619 0.00 0.00 35.94 3.24
1532 1610 5.668535 TGGTATAGGCTTTATTAGGTGGTGT 59.331 40.000 0.00 0.00 0.00 4.16
1546 1624 3.307480 AGGTGGTGTGTACCTTCTATTGC 60.307 47.826 0.00 0.00 46.13 3.56
1554 1632 4.389077 GTGTACCTTCTATTGCACAGTCAC 59.611 45.833 0.00 0.00 0.00 3.67
1572 1650 1.399440 CACTGGACATTGATGCTTCGG 59.601 52.381 0.00 0.00 0.00 4.30
1577 1658 2.359900 GACATTGATGCTTCGGTCCTT 58.640 47.619 0.00 0.00 0.00 3.36
1587 1668 4.839121 TGCTTCGGTCCTTACATTATTGT 58.161 39.130 0.00 0.00 39.98 2.71
1595 1676 7.762615 TCGGTCCTTACATTATTGTTTCACTAG 59.237 37.037 0.00 0.00 37.28 2.57
1669 1750 3.372954 AGTGCTTATCGTTATCAGACGC 58.627 45.455 0.00 0.00 42.50 5.19
1677 1758 2.427812 TCGTTATCAGACGCCAATGGTA 59.572 45.455 0.00 0.00 42.50 3.25
1678 1759 3.069016 TCGTTATCAGACGCCAATGGTAT 59.931 43.478 0.00 0.00 42.50 2.73
1679 1760 3.184379 CGTTATCAGACGCCAATGGTATG 59.816 47.826 0.00 0.00 36.12 2.39
1785 1868 1.191535 TGGTACTCTGCGCTAACCAT 58.808 50.000 9.73 0.00 35.34 3.55
1827 1916 3.087031 CACCCTTGATTCAGTTGCTGAT 58.913 45.455 0.00 0.00 40.39 2.90
1828 1917 3.087031 ACCCTTGATTCAGTTGCTGATG 58.913 45.455 0.00 0.00 40.39 3.07
1829 1918 2.159282 CCCTTGATTCAGTTGCTGATGC 60.159 50.000 0.00 0.00 40.39 3.91
1830 1919 2.753452 CCTTGATTCAGTTGCTGATGCT 59.247 45.455 0.00 0.00 40.39 3.79
1831 1920 3.427638 CCTTGATTCAGTTGCTGATGCTG 60.428 47.826 0.00 0.00 40.39 4.41
1832 1921 3.062122 TGATTCAGTTGCTGATGCTGA 57.938 42.857 0.00 0.00 40.39 4.26
1833 1922 3.007635 TGATTCAGTTGCTGATGCTGAG 58.992 45.455 0.00 0.00 40.39 3.35
1859 1948 6.029346 AGAAACATTTGATTGTGGTGGATC 57.971 37.500 0.00 0.00 0.00 3.36
1871 1960 3.627123 TGTGGTGGATCATTTTAGCATCG 59.373 43.478 0.00 0.00 0.00 3.84
1881 1970 7.171508 GGATCATTTTAGCATCGTATCTGTTGA 59.828 37.037 0.00 0.00 0.00 3.18
1896 1985 2.919859 CTGTTGATACTCTGCACTGACG 59.080 50.000 0.00 0.00 0.00 4.35
1907 1996 1.148310 GCACTGACGCTTAGCTTGAA 58.852 50.000 1.76 0.00 0.00 2.69
1908 1997 1.734465 GCACTGACGCTTAGCTTGAAT 59.266 47.619 1.76 0.00 0.00 2.57
1971 2060 2.632512 TGGCGTGGATATCTTAGCATCA 59.367 45.455 14.97 5.83 0.00 3.07
1981 2070 9.993454 TGGATATCTTAGCATCATATCTATTGC 57.007 33.333 2.05 0.00 32.29 3.56
1989 2078 7.715266 AGCATCATATCTATTGCTACTCTGA 57.285 36.000 0.00 0.00 43.28 3.27
2110 2199 9.212641 GCATGTATATGAATGACTATCAGTTGT 57.787 33.333 3.28 0.00 36.36 3.32
2118 2207 9.725019 ATGAATGACTATCAGTTGTCTTTGTTA 57.275 29.630 0.00 0.00 32.97 2.41
2119 2208 9.725019 TGAATGACTATCAGTTGTCTTTGTTAT 57.275 29.630 0.00 0.00 32.97 1.89
2160 2259 1.338674 TGTCACATGAACTTAGGGGCG 60.339 52.381 0.00 0.00 0.00 6.13
2181 2283 3.503748 CGGCTTGTCAAGGAAAAGAGAAT 59.496 43.478 14.40 0.00 28.86 2.40
2380 2483 1.070786 GGTCTGTCTGTTTCCCGCA 59.929 57.895 0.00 0.00 0.00 5.69
2403 2516 7.483307 GCACATATTCACCAGTCATTAATTGT 58.517 34.615 0.00 0.00 0.00 2.71
2471 2584 1.061546 TTCTTTCCCAGTAACGGGCT 58.938 50.000 0.00 0.00 46.92 5.19
2507 2620 3.006003 TGTGCTTGACGTGTACTATCCAA 59.994 43.478 0.00 0.00 0.00 3.53
2565 2678 5.270853 CGTTTAACTGCCATTATTAGGTGC 58.729 41.667 0.00 0.00 0.00 5.01
2617 2730 3.514539 AGCCTCTGGATATGCTATGTGA 58.485 45.455 0.00 0.00 30.97 3.58
2728 2841 8.908786 TCTCTGATTTTCACCATATCCATTAC 57.091 34.615 0.00 0.00 0.00 1.89
2768 2881 9.868277 ACGCAAATAATCATTTAATCTTTTGGA 57.132 25.926 0.00 0.00 32.96 3.53
2889 3002 6.932960 CAGTCAATCCATTATCACTAGCATCA 59.067 38.462 0.00 0.00 0.00 3.07
2971 3084 6.545298 AGATAAAGCCAAGTGATGATTCCTTC 59.455 38.462 0.00 0.00 0.00 3.46
3198 3311 3.507162 TTGCAGGAATGTTCTCAAGGA 57.493 42.857 0.00 0.00 0.00 3.36
3319 3432 4.072131 TCAGCCAATGTTAAGGTCTTCAC 58.928 43.478 0.00 0.00 0.00 3.18
3651 3945 0.606401 AGTCCAATGGTTCGCACCTG 60.606 55.000 5.66 0.00 44.61 4.00
3670 3964 3.127548 CCTGTGTCCTTTATGTGATGCAC 59.872 47.826 0.00 0.00 34.56 4.57
3817 4113 2.683362 GTCAAGCTAATTGGGTACTGCC 59.317 50.000 0.00 0.00 39.54 4.85
3819 4115 2.684881 CAAGCTAATTGGGTACTGCCTG 59.315 50.000 0.00 0.00 35.08 4.85
3971 4296 4.867047 CGATTCAGACTGTAGCATGTTCTT 59.133 41.667 1.59 0.00 0.00 2.52
4013 4358 1.048724 TCCTTGATGTAGGGGGCTCG 61.049 60.000 0.00 0.00 35.90 5.03
4022 4367 1.899437 TAGGGGGCTCGCACTTTCAG 61.899 60.000 2.42 0.00 0.00 3.02
4389 4759 7.691877 CCTTTGACTTGCAATTTTGTGTTTTAC 59.308 33.333 0.00 0.00 36.15 2.01
4450 4823 5.443185 AAACATTGTCATGTGACTGGAAG 57.557 39.130 13.71 3.33 43.34 3.46
4542 4939 7.817418 AAAAATGTGTAAGCTGTTTCCTCTA 57.183 32.000 0.00 0.00 0.00 2.43
4598 4995 6.635166 TTTTTGGAACGACTTTTACTTTGC 57.365 33.333 0.00 0.00 0.00 3.68
4612 5009 8.579863 ACTTTTACTTTGCTCAATTTGCTAGAT 58.420 29.630 0.00 0.00 0.00 1.98
4641 5038 5.999600 CAGTATAAATGCATCCCATGTCAGA 59.000 40.000 0.00 0.00 33.49 3.27
4725 5124 5.358725 ACGGTGTACCTTTTCTTTTGTGAAT 59.641 36.000 0.00 0.00 0.00 2.57
4730 5129 8.699749 GTGTACCTTTTCTTTTGTGAATTATGC 58.300 33.333 0.00 0.00 0.00 3.14
4793 5195 7.807433 TGATGGTGATTTTAATTGTCTTCAACG 59.193 33.333 0.00 0.00 36.33 4.10
4991 5465 9.810545 TTTTCCTCTTAATTTACTTTGTTGTGG 57.189 29.630 0.00 0.00 0.00 4.17
5053 5527 7.908601 GCTCTACTTTTTCATAACATTTACCCG 59.091 37.037 0.00 0.00 0.00 5.28
5054 5528 7.754625 TCTACTTTTTCATAACATTTACCCGC 58.245 34.615 0.00 0.00 0.00 6.13
5072 5546 2.599659 CGCGAGCTCATATTCAGCATA 58.400 47.619 15.40 0.00 39.56 3.14
5073 5547 2.343843 CGCGAGCTCATATTCAGCATAC 59.656 50.000 15.40 0.00 39.56 2.39
5142 5618 4.626042 CCAAGAGCGACATCTATAGCTTT 58.374 43.478 0.00 0.00 40.39 3.51
5175 5651 2.894387 GAGATGCTGTCAGGCCGC 60.894 66.667 1.14 0.00 0.00 6.53
5319 5795 1.207089 CTGAACGGAGCCCAGACAATA 59.793 52.381 0.00 0.00 33.14 1.90
5423 5899 2.948720 AAGACTCCAGCGACCCAGC 61.949 63.158 0.00 0.00 37.41 4.85
5424 5900 4.459089 GACTCCAGCGACCCAGCC 62.459 72.222 0.00 0.00 38.01 4.85
5426 5902 4.463879 CTCCAGCGACCCAGCCAG 62.464 72.222 0.00 0.00 38.01 4.85
5428 5904 4.020617 CCAGCGACCCAGCCAGAA 62.021 66.667 0.00 0.00 38.01 3.02
5429 5905 2.435586 CAGCGACCCAGCCAGAAG 60.436 66.667 0.00 0.00 38.01 2.85
5430 5906 2.604686 AGCGACCCAGCCAGAAGA 60.605 61.111 0.00 0.00 38.01 2.87
5431 5907 2.435059 GCGACCCAGCCAGAAGAC 60.435 66.667 0.00 0.00 0.00 3.01
5432 5908 2.266055 CGACCCAGCCAGAAGACC 59.734 66.667 0.00 0.00 0.00 3.85
5433 5909 2.266055 GACCCAGCCAGAAGACCG 59.734 66.667 0.00 0.00 0.00 4.79
5434 5910 3.316573 GACCCAGCCAGAAGACCGG 62.317 68.421 0.00 0.00 0.00 5.28
5440 5916 2.266055 CCAGAAGACCGGCAGACC 59.734 66.667 0.00 0.00 0.00 3.85
5441 5917 2.266055 CAGAAGACCGGCAGACCC 59.734 66.667 0.00 0.00 0.00 4.46
5442 5918 2.203788 AGAAGACCGGCAGACCCA 60.204 61.111 0.00 0.00 0.00 4.51
5443 5919 2.266055 GAAGACCGGCAGACCCAG 59.734 66.667 0.00 0.00 0.00 4.45
5478 5954 2.521958 ATCCAACCAGAAGACCGGCG 62.522 60.000 0.00 0.00 0.00 6.46
5623 6099 1.709147 GGCCTACTCGTCGTAGCGAA 61.709 60.000 0.00 0.00 43.48 4.70
5624 6100 0.588482 GCCTACTCGTCGTAGCGAAC 60.588 60.000 8.49 0.00 43.48 3.95
5764 9569 5.981315 GTCATCATTGAACTATTGGCATTGG 59.019 40.000 0.00 0.00 32.48 3.16
5778 9583 1.728971 GCATTGGAGTCTGAGTTCGTG 59.271 52.381 0.00 0.00 0.00 4.35
5779 9584 2.868044 GCATTGGAGTCTGAGTTCGTGT 60.868 50.000 0.00 0.00 0.00 4.49
5825 9630 4.162888 TGTGCATAGTCTTCACTGGATCAT 59.837 41.667 0.00 0.00 33.62 2.45
5826 9631 5.363580 TGTGCATAGTCTTCACTGGATCATA 59.636 40.000 0.00 0.00 33.62 2.15
5827 9632 6.127083 TGTGCATAGTCTTCACTGGATCATAA 60.127 38.462 0.00 0.00 33.62 1.90
5839 9644 3.336138 GGATCATAATCCCTCCGTTCC 57.664 52.381 0.00 0.00 45.11 3.62
5840 9645 2.637872 GGATCATAATCCCTCCGTTCCA 59.362 50.000 0.00 0.00 45.11 3.53
5841 9646 3.264450 GGATCATAATCCCTCCGTTCCAT 59.736 47.826 0.00 0.00 45.11 3.41
5842 9647 4.469945 GGATCATAATCCCTCCGTTCCATA 59.530 45.833 0.00 0.00 45.11 2.74
5843 9648 5.045869 GGATCATAATCCCTCCGTTCCATAA 60.046 44.000 0.00 0.00 45.11 1.90
5844 9649 6.353082 GGATCATAATCCCTCCGTTCCATAAT 60.353 42.308 0.00 0.00 45.11 1.28
5845 9650 7.147549 GGATCATAATCCCTCCGTTCCATAATA 60.148 40.741 0.00 0.00 45.11 0.98
5846 9651 7.749377 TCATAATCCCTCCGTTCCATAATAT 57.251 36.000 0.00 0.00 0.00 1.28
5847 9652 7.564793 TCATAATCCCTCCGTTCCATAATATG 58.435 38.462 0.00 0.00 0.00 1.78
5858 9663 2.546899 CCATAATATGGGACGGAGGGA 58.453 52.381 11.41 0.00 46.86 4.20
5859 9664 2.501723 CCATAATATGGGACGGAGGGAG 59.498 54.545 11.41 0.00 46.86 4.30
5869 9674 3.309701 GGGACGGAGGGAGTACCATATAT 60.310 52.174 0.00 0.00 42.20 0.86
5870 9675 3.952967 GGACGGAGGGAGTACCATATATC 59.047 52.174 0.00 0.00 43.89 1.63
5878 9683 6.390504 AGGGAGTACCATATATCCAGTGAAA 58.609 40.000 0.00 0.00 43.89 2.69
5902 9707 9.730705 AAATATATCAGTGGTATGATTCTGGTG 57.269 33.333 6.14 0.00 40.40 4.17
5903 9708 8.670521 ATATATCAGTGGTATGATTCTGGTGA 57.329 34.615 6.14 0.00 40.40 4.02
5904 9709 4.743057 TCAGTGGTATGATTCTGGTGAG 57.257 45.455 0.00 0.00 0.00 3.51
5905 9710 3.118629 TCAGTGGTATGATTCTGGTGAGC 60.119 47.826 0.00 0.00 0.00 4.26
5906 9711 2.159043 AGTGGTATGATTCTGGTGAGCG 60.159 50.000 0.00 0.00 0.00 5.03
5907 9712 1.831106 TGGTATGATTCTGGTGAGCGT 59.169 47.619 0.00 0.00 0.00 5.07
5908 9713 2.159099 TGGTATGATTCTGGTGAGCGTC 60.159 50.000 0.00 0.00 0.00 5.19
5909 9714 2.159099 GGTATGATTCTGGTGAGCGTCA 60.159 50.000 0.00 0.00 0.00 4.35
5910 9715 2.306341 ATGATTCTGGTGAGCGTCAG 57.694 50.000 0.00 0.00 0.00 3.51
5911 9716 0.969149 TGATTCTGGTGAGCGTCAGT 59.031 50.000 0.00 0.00 33.13 3.41
5912 9717 1.344438 TGATTCTGGTGAGCGTCAGTT 59.656 47.619 0.00 0.00 33.13 3.16
5913 9718 2.224281 TGATTCTGGTGAGCGTCAGTTT 60.224 45.455 0.00 0.00 33.13 2.66
5914 9719 2.325583 TTCTGGTGAGCGTCAGTTTT 57.674 45.000 0.00 0.00 33.13 2.43
5915 9720 2.325583 TCTGGTGAGCGTCAGTTTTT 57.674 45.000 0.00 0.00 33.13 1.94
5938 9743 4.096003 GGGGGCGTCAGCTTAGCA 62.096 66.667 7.07 0.00 44.37 3.49
5940 9745 2.820037 GGGCGTCAGCTTAGCACC 60.820 66.667 7.07 0.00 44.37 5.01
5961 9766 2.607750 AGTGAGTGCCGGTGGGAT 60.608 61.111 1.90 0.00 34.06 3.85
5962 9767 2.436646 GTGAGTGCCGGTGGGATG 60.437 66.667 1.90 0.00 34.06 3.51
5963 9768 2.927856 TGAGTGCCGGTGGGATGT 60.928 61.111 1.90 0.00 34.06 3.06
5965 9770 1.144057 GAGTGCCGGTGGGATGTAG 59.856 63.158 1.90 0.00 34.06 2.74
5967 9772 3.087253 TGCCGGTGGGATGTAGGG 61.087 66.667 1.90 0.00 34.06 3.53
5968 9773 3.873812 GCCGGTGGGATGTAGGGG 61.874 72.222 1.90 0.00 34.06 4.79
5969 9774 2.041301 CCGGTGGGATGTAGGGGA 60.041 66.667 0.00 0.00 34.06 4.81
5970 9775 1.461461 CCGGTGGGATGTAGGGGAT 60.461 63.158 0.00 0.00 34.06 3.85
5971 9776 1.060163 CCGGTGGGATGTAGGGGATT 61.060 60.000 0.00 0.00 34.06 3.01
5972 9777 0.108585 CGGTGGGATGTAGGGGATTG 59.891 60.000 0.00 0.00 0.00 2.67
5973 9778 1.518367 GGTGGGATGTAGGGGATTGA 58.482 55.000 0.00 0.00 0.00 2.57
5974 9779 1.850345 GGTGGGATGTAGGGGATTGAA 59.150 52.381 0.00 0.00 0.00 2.69
5975 9780 2.243736 GGTGGGATGTAGGGGATTGAAA 59.756 50.000 0.00 0.00 0.00 2.69
5976 9781 3.555966 GTGGGATGTAGGGGATTGAAAG 58.444 50.000 0.00 0.00 0.00 2.62
5977 9782 2.091885 TGGGATGTAGGGGATTGAAAGC 60.092 50.000 0.00 0.00 0.00 3.51
5978 9783 2.587522 GGATGTAGGGGATTGAAAGCC 58.412 52.381 0.00 0.00 0.00 4.35
5986 9791 2.455674 GGATTGAAAGCCCACCAAAC 57.544 50.000 0.00 0.00 0.00 2.93
5987 9792 1.001974 GGATTGAAAGCCCACCAAACC 59.998 52.381 0.00 0.00 0.00 3.27
5988 9793 0.678950 ATTGAAAGCCCACCAAACCG 59.321 50.000 0.00 0.00 0.00 4.44
5989 9794 0.395862 TTGAAAGCCCACCAAACCGA 60.396 50.000 0.00 0.00 0.00 4.69
5990 9795 0.395862 TGAAAGCCCACCAAACCGAA 60.396 50.000 0.00 0.00 0.00 4.30
5991 9796 0.031585 GAAAGCCCACCAAACCGAAC 59.968 55.000 0.00 0.00 0.00 3.95
5992 9797 0.684805 AAAGCCCACCAAACCGAACA 60.685 50.000 0.00 0.00 0.00 3.18
5993 9798 0.684805 AAGCCCACCAAACCGAACAA 60.685 50.000 0.00 0.00 0.00 2.83
5994 9799 1.106944 AGCCCACCAAACCGAACAAG 61.107 55.000 0.00 0.00 0.00 3.16
5995 9800 1.362355 CCCACCAAACCGAACAAGC 59.638 57.895 0.00 0.00 0.00 4.01
5996 9801 1.362355 CCACCAAACCGAACAAGCC 59.638 57.895 0.00 0.00 0.00 4.35
5997 9802 1.362355 CACCAAACCGAACAAGCCC 59.638 57.895 0.00 0.00 0.00 5.19
5998 9803 2.190841 ACCAAACCGAACAAGCCCG 61.191 57.895 0.00 0.00 0.00 6.13
6041 9846 2.354821 GGGATTTGTCACCAATAGTCGC 59.645 50.000 0.00 0.00 0.00 5.19
6172 10026 2.228059 CGAGGTACACAGATATCCGGT 58.772 52.381 0.00 0.00 0.00 5.28
6178 10032 1.063190 ACACAGATATCCGGTCCCTGA 60.063 52.381 17.73 0.00 0.00 3.86
6204 10068 4.194720 GAGCACGACGGAGGCGAT 62.195 66.667 1.02 0.00 0.00 4.58
6367 10231 2.347490 GCTTTGCTCCTCGGTCCA 59.653 61.111 0.00 0.00 0.00 4.02
6489 10356 1.760086 CCTCCTCCGAGCAGGTGAT 60.760 63.158 0.00 0.00 41.99 3.06
6565 10432 1.733041 CGTGTACCAGTGCCTGTCG 60.733 63.158 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.801251 ACGTTCGAGAGGAAGTACCG 59.199 55.000 0.00 0.00 44.74 4.02
1 2 3.181502 CCTAACGTTCGAGAGGAAGTACC 60.182 52.174 2.82 0.00 34.69 3.34
2 3 3.686726 TCCTAACGTTCGAGAGGAAGTAC 59.313 47.826 13.88 0.00 35.12 2.73
3 4 3.942829 TCCTAACGTTCGAGAGGAAGTA 58.057 45.455 13.88 0.00 35.12 2.24
4 5 2.787994 TCCTAACGTTCGAGAGGAAGT 58.212 47.619 13.88 0.00 35.12 3.01
5 6 3.628487 AGATCCTAACGTTCGAGAGGAAG 59.372 47.826 18.84 2.91 41.37 3.46
6 7 3.377485 CAGATCCTAACGTTCGAGAGGAA 59.623 47.826 18.84 5.76 41.37 3.36
7 8 2.943690 CAGATCCTAACGTTCGAGAGGA 59.056 50.000 17.60 17.60 42.22 3.71
8 9 2.683867 ACAGATCCTAACGTTCGAGAGG 59.316 50.000 2.82 6.24 0.00 3.69
9 10 3.686128 CACAGATCCTAACGTTCGAGAG 58.314 50.000 2.82 0.00 0.00 3.20
10 11 2.159421 GCACAGATCCTAACGTTCGAGA 60.159 50.000 2.82 0.00 0.00 4.04
11 12 2.186076 GCACAGATCCTAACGTTCGAG 58.814 52.381 2.82 0.00 0.00 4.04
12 13 1.542472 TGCACAGATCCTAACGTTCGA 59.458 47.619 2.82 1.65 0.00 3.71
13 14 1.920574 CTGCACAGATCCTAACGTTCG 59.079 52.381 2.82 0.00 0.00 3.95
14 15 2.094182 TCCTGCACAGATCCTAACGTTC 60.094 50.000 2.82 0.00 0.00 3.95
15 16 1.899814 TCCTGCACAGATCCTAACGTT 59.100 47.619 5.88 5.88 0.00 3.99
16 17 1.478510 CTCCTGCACAGATCCTAACGT 59.521 52.381 0.00 0.00 0.00 3.99
17 18 1.751351 TCTCCTGCACAGATCCTAACG 59.249 52.381 0.00 0.00 0.00 3.18
18 19 3.027412 TCTCTCCTGCACAGATCCTAAC 58.973 50.000 0.00 0.00 0.00 2.34
19 20 3.388552 TCTCTCCTGCACAGATCCTAA 57.611 47.619 0.00 0.00 0.00 2.69
20 21 3.388552 TTCTCTCCTGCACAGATCCTA 57.611 47.619 0.00 0.00 0.00 2.94
21 22 2.244486 TTCTCTCCTGCACAGATCCT 57.756 50.000 0.00 0.00 0.00 3.24
22 23 2.433604 TGATTCTCTCCTGCACAGATCC 59.566 50.000 0.00 0.00 0.00 3.36
23 24 3.815856 TGATTCTCTCCTGCACAGATC 57.184 47.619 0.00 0.00 0.00 2.75
24 25 4.452825 CATTGATTCTCTCCTGCACAGAT 58.547 43.478 0.00 0.00 0.00 2.90
25 26 3.870274 CATTGATTCTCTCCTGCACAGA 58.130 45.455 0.00 0.00 0.00 3.41
26 27 2.355132 GCATTGATTCTCTCCTGCACAG 59.645 50.000 0.00 0.00 33.77 3.66
27 28 2.290450 TGCATTGATTCTCTCCTGCACA 60.290 45.455 0.00 0.00 36.90 4.57
28 29 2.097142 GTGCATTGATTCTCTCCTGCAC 59.903 50.000 9.38 9.38 46.36 4.57
29 30 2.362736 GTGCATTGATTCTCTCCTGCA 58.637 47.619 0.00 0.00 38.49 4.41
30 31 1.329906 CGTGCATTGATTCTCTCCTGC 59.670 52.381 0.00 0.00 34.03 4.85
31 32 2.864946 CTCGTGCATTGATTCTCTCCTG 59.135 50.000 0.00 0.00 0.00 3.86
32 33 2.762887 TCTCGTGCATTGATTCTCTCCT 59.237 45.455 0.00 0.00 0.00 3.69
33 34 3.170791 TCTCGTGCATTGATTCTCTCC 57.829 47.619 0.00 0.00 0.00 3.71
34 35 4.032672 CAGTTCTCGTGCATTGATTCTCTC 59.967 45.833 0.00 0.00 0.00 3.20
35 36 3.931468 CAGTTCTCGTGCATTGATTCTCT 59.069 43.478 0.00 0.00 0.00 3.10
36 37 3.063180 CCAGTTCTCGTGCATTGATTCTC 59.937 47.826 0.00 0.00 0.00 2.87
37 38 3.005554 CCAGTTCTCGTGCATTGATTCT 58.994 45.455 0.00 0.00 0.00 2.40
38 39 3.002791 TCCAGTTCTCGTGCATTGATTC 58.997 45.455 0.00 0.00 0.00 2.52
39 40 3.057969 TCCAGTTCTCGTGCATTGATT 57.942 42.857 0.00 0.00 0.00 2.57
40 41 2.768253 TCCAGTTCTCGTGCATTGAT 57.232 45.000 0.00 0.00 0.00 2.57
41 42 2.621338 GATCCAGTTCTCGTGCATTGA 58.379 47.619 0.00 0.00 0.00 2.57
42 43 1.325640 CGATCCAGTTCTCGTGCATTG 59.674 52.381 0.00 0.00 0.00 2.82
43 44 1.645034 CGATCCAGTTCTCGTGCATT 58.355 50.000 0.00 0.00 0.00 3.56
44 45 0.179100 CCGATCCAGTTCTCGTGCAT 60.179 55.000 0.00 0.00 33.11 3.96
45 46 1.215382 CCGATCCAGTTCTCGTGCA 59.785 57.895 0.00 0.00 33.11 4.57
46 47 0.526524 CTCCGATCCAGTTCTCGTGC 60.527 60.000 0.00 0.00 33.11 5.34
47 48 0.101399 CCTCCGATCCAGTTCTCGTG 59.899 60.000 0.00 0.00 33.11 4.35
48 49 1.038130 CCCTCCGATCCAGTTCTCGT 61.038 60.000 0.00 0.00 33.11 4.18
49 50 0.752009 TCCCTCCGATCCAGTTCTCG 60.752 60.000 0.00 0.00 34.73 4.04
50 51 1.036707 CTCCCTCCGATCCAGTTCTC 58.963 60.000 0.00 0.00 0.00 2.87
51 52 0.397816 CCTCCCTCCGATCCAGTTCT 60.398 60.000 0.00 0.00 0.00 3.01
52 53 2.034048 GCCTCCCTCCGATCCAGTTC 62.034 65.000 0.00 0.00 0.00 3.01
53 54 2.066999 GCCTCCCTCCGATCCAGTT 61.067 63.158 0.00 0.00 0.00 3.16
54 55 2.444895 GCCTCCCTCCGATCCAGT 60.445 66.667 0.00 0.00 0.00 4.00
55 56 3.610669 CGCCTCCCTCCGATCCAG 61.611 72.222 0.00 0.00 0.00 3.86
65 66 4.404098 TTTTCCTCGCCGCCTCCC 62.404 66.667 0.00 0.00 0.00 4.30
66 67 3.125573 GTTTTCCTCGCCGCCTCC 61.126 66.667 0.00 0.00 0.00 4.30
67 68 3.488090 CGTTTTCCTCGCCGCCTC 61.488 66.667 0.00 0.00 0.00 4.70
74 75 1.511887 CATTGGCGCGTTTTCCTCG 60.512 57.895 8.43 0.00 0.00 4.63
75 76 0.451783 ATCATTGGCGCGTTTTCCTC 59.548 50.000 8.43 0.00 0.00 3.71
76 77 0.887933 AATCATTGGCGCGTTTTCCT 59.112 45.000 8.43 0.00 0.00 3.36
77 78 0.991344 CAATCATTGGCGCGTTTTCC 59.009 50.000 8.43 0.00 0.00 3.13
78 79 1.648681 GACAATCATTGGCGCGTTTTC 59.351 47.619 8.43 0.00 34.12 2.29
79 80 1.696988 GACAATCATTGGCGCGTTTT 58.303 45.000 8.43 0.00 34.12 2.43
80 81 3.399879 GACAATCATTGGCGCGTTT 57.600 47.368 8.43 0.00 34.12 3.60
86 87 0.026803 GAGTCGCGACAATCATTGGC 59.973 55.000 37.85 9.98 34.51 4.52
87 88 0.652592 GGAGTCGCGACAATCATTGG 59.347 55.000 37.85 0.00 34.12 3.16
88 89 0.298707 CGGAGTCGCGACAATCATTG 59.701 55.000 37.85 18.04 0.00 2.82
89 90 0.108804 ACGGAGTCGCGACAATCATT 60.109 50.000 37.85 18.83 29.74 2.57
90 91 1.511305 ACGGAGTCGCGACAATCAT 59.489 52.632 37.85 19.61 29.74 2.45
91 92 2.959372 ACGGAGTCGCGACAATCA 59.041 55.556 37.85 0.00 29.74 2.57
103 104 1.986378 GATGTGTCTGTTTCGACGGAG 59.014 52.381 0.00 0.00 36.71 4.63
104 105 1.664874 CGATGTGTCTGTTTCGACGGA 60.665 52.381 0.00 0.00 36.71 4.69
105 106 0.708370 CGATGTGTCTGTTTCGACGG 59.292 55.000 0.00 0.00 36.71 4.79
106 107 1.644295 CTCGATGTGTCTGTTTCGACG 59.356 52.381 0.00 0.00 35.85 5.12
107 108 2.929960 TCTCGATGTGTCTGTTTCGAC 58.070 47.619 0.00 0.00 35.85 4.20
108 109 3.427638 GGATCTCGATGTGTCTGTTTCGA 60.428 47.826 0.00 0.00 38.20 3.71
109 110 2.854777 GGATCTCGATGTGTCTGTTTCG 59.145 50.000 0.00 0.00 0.00 3.46
110 111 2.854777 CGGATCTCGATGTGTCTGTTTC 59.145 50.000 0.00 0.00 42.43 2.78
111 112 2.231478 ACGGATCTCGATGTGTCTGTTT 59.769 45.455 10.05 0.00 42.43 2.83
112 113 1.819288 ACGGATCTCGATGTGTCTGTT 59.181 47.619 10.05 0.00 42.43 3.16
113 114 1.464734 ACGGATCTCGATGTGTCTGT 58.535 50.000 10.05 0.00 42.43 3.41
114 115 2.287069 GGTACGGATCTCGATGTGTCTG 60.287 54.545 10.05 0.00 42.43 3.51
115 116 1.948145 GGTACGGATCTCGATGTGTCT 59.052 52.381 10.05 0.00 42.43 3.41
116 117 2.402640 GGTACGGATCTCGATGTGTC 57.597 55.000 10.05 0.00 42.43 3.67
131 132 4.125097 CGCGGCAAACGTCGGTAC 62.125 66.667 0.00 0.00 46.52 3.34
164 165 3.573772 TTCTCCTGCTGTGTCGGCG 62.574 63.158 0.00 0.00 38.82 6.46
165 166 1.301716 TTTCTCCTGCTGTGTCGGC 60.302 57.895 0.00 0.00 36.10 5.54
166 167 1.284982 CGTTTCTCCTGCTGTGTCGG 61.285 60.000 0.00 0.00 0.00 4.79
167 168 1.891060 GCGTTTCTCCTGCTGTGTCG 61.891 60.000 0.00 0.00 0.00 4.35
168 169 0.880278 TGCGTTTCTCCTGCTGTGTC 60.880 55.000 0.00 0.00 0.00 3.67
169 170 0.250467 ATGCGTTTCTCCTGCTGTGT 60.250 50.000 0.00 0.00 0.00 3.72
170 171 0.445436 GATGCGTTTCTCCTGCTGTG 59.555 55.000 0.00 0.00 0.00 3.66
171 172 1.016130 CGATGCGTTTCTCCTGCTGT 61.016 55.000 0.00 0.00 0.00 4.40
172 173 1.699656 CCGATGCGTTTCTCCTGCTG 61.700 60.000 0.00 0.00 0.00 4.41
173 174 1.448540 CCGATGCGTTTCTCCTGCT 60.449 57.895 0.00 0.00 0.00 4.24
174 175 1.741770 ACCGATGCGTTTCTCCTGC 60.742 57.895 0.00 0.00 0.00 4.85
175 176 1.970917 GCACCGATGCGTTTCTCCTG 61.971 60.000 0.00 0.00 43.33 3.86
176 177 1.741770 GCACCGATGCGTTTCTCCT 60.742 57.895 0.00 0.00 43.33 3.69
177 178 2.785258 GCACCGATGCGTTTCTCC 59.215 61.111 0.00 0.00 43.33 3.71
202 203 3.195698 GCGGGCTTCGACATGGTC 61.196 66.667 0.00 0.00 42.43 4.02
205 206 3.853330 CACGCGGGCTTCGACATG 61.853 66.667 12.47 0.00 42.43 3.21
206 207 4.063967 TCACGCGGGCTTCGACAT 62.064 61.111 12.47 0.00 42.43 3.06
228 229 4.922026 AAACACGGGCGCGTTCCT 62.922 61.111 27.41 10.84 0.00 3.36
229 230 4.676586 CAAACACGGGCGCGTTCC 62.677 66.667 27.41 9.38 0.00 3.62
230 231 3.850092 GACAAACACGGGCGCGTTC 62.850 63.158 27.41 17.14 0.00 3.95
231 232 3.944233 GACAAACACGGGCGCGTT 61.944 61.111 27.41 12.01 0.00 4.84
239 240 3.036084 AGAGCCGCGACAAACACG 61.036 61.111 8.23 0.00 0.00 4.49
240 241 2.159272 GACAGAGCCGCGACAAACAC 62.159 60.000 8.23 0.00 0.00 3.32
241 242 1.954146 GACAGAGCCGCGACAAACA 60.954 57.895 8.23 0.00 0.00 2.83
242 243 2.853914 GACAGAGCCGCGACAAAC 59.146 61.111 8.23 0.00 0.00 2.93
243 244 2.686956 TTCGACAGAGCCGCGACAAA 62.687 55.000 8.23 0.00 33.33 2.83
244 245 2.686956 TTTCGACAGAGCCGCGACAA 62.687 55.000 8.23 0.00 33.33 3.18
245 246 3.202216 TTTCGACAGAGCCGCGACA 62.202 57.895 8.23 0.00 33.33 4.35
246 247 2.430244 TTTCGACAGAGCCGCGAC 60.430 61.111 8.23 0.00 33.33 5.19
247 248 2.430244 GTTTCGACAGAGCCGCGA 60.430 61.111 8.23 0.00 0.00 5.87
248 249 3.479269 GGTTTCGACAGAGCCGCG 61.479 66.667 0.00 0.00 0.00 6.46
249 250 3.479269 CGGTTTCGACAGAGCCGC 61.479 66.667 0.00 0.00 38.89 6.53
250 251 3.479269 GCGGTTTCGACAGAGCCG 61.479 66.667 6.52 6.52 44.09 5.52
251 252 2.357034 TGCGGTTTCGACAGAGCC 60.357 61.111 0.00 0.00 39.00 4.70
252 253 2.853914 GTGCGGTTTCGACAGAGC 59.146 61.111 0.00 0.00 39.00 4.09
253 254 1.337817 CTCGTGCGGTTTCGACAGAG 61.338 60.000 0.00 0.00 39.00 3.35
254 255 1.371267 CTCGTGCGGTTTCGACAGA 60.371 57.895 0.00 0.00 39.00 3.41
255 256 3.000080 GCTCGTGCGGTTTCGACAG 62.000 63.158 0.00 0.00 39.00 3.51
256 257 3.033764 GCTCGTGCGGTTTCGACA 61.034 61.111 0.00 0.00 39.00 4.35
257 258 3.033764 TGCTCGTGCGGTTTCGAC 61.034 61.111 4.84 0.00 43.34 4.20
258 259 3.033764 GTGCTCGTGCGGTTTCGA 61.034 61.111 4.84 0.00 43.34 3.71
259 260 4.072088 GGTGCTCGTGCGGTTTCG 62.072 66.667 4.84 0.00 43.34 3.46
260 261 3.723348 GGGTGCTCGTGCGGTTTC 61.723 66.667 4.84 0.00 43.34 2.78
261 262 3.842925 ATGGGTGCTCGTGCGGTTT 62.843 57.895 4.84 0.00 43.34 3.27
262 263 4.329545 ATGGGTGCTCGTGCGGTT 62.330 61.111 4.84 0.00 43.34 4.44
263 264 4.760047 GATGGGTGCTCGTGCGGT 62.760 66.667 4.84 0.00 43.34 5.68
265 266 4.758251 TGGATGGGTGCTCGTGCG 62.758 66.667 4.84 0.00 43.34 5.34
266 267 1.718757 GAATGGATGGGTGCTCGTGC 61.719 60.000 1.71 1.71 40.20 5.34
267 268 0.392863 TGAATGGATGGGTGCTCGTG 60.393 55.000 0.00 0.00 0.00 4.35
268 269 0.392998 GTGAATGGATGGGTGCTCGT 60.393 55.000 0.00 0.00 0.00 4.18
269 270 0.392863 TGTGAATGGATGGGTGCTCG 60.393 55.000 0.00 0.00 0.00 5.03
270 271 1.098050 GTGTGAATGGATGGGTGCTC 58.902 55.000 0.00 0.00 0.00 4.26
271 272 0.405198 TGTGTGAATGGATGGGTGCT 59.595 50.000 0.00 0.00 0.00 4.40
272 273 1.203052 CTTGTGTGAATGGATGGGTGC 59.797 52.381 0.00 0.00 0.00 5.01
273 274 2.751259 CTCTTGTGTGAATGGATGGGTG 59.249 50.000 0.00 0.00 0.00 4.61
274 275 2.644299 TCTCTTGTGTGAATGGATGGGT 59.356 45.455 0.00 0.00 0.00 4.51
275 276 3.054875 TCTCTCTTGTGTGAATGGATGGG 60.055 47.826 0.00 0.00 0.00 4.00
276 277 3.937706 GTCTCTCTTGTGTGAATGGATGG 59.062 47.826 0.00 0.00 0.00 3.51
277 278 3.937706 GGTCTCTCTTGTGTGAATGGATG 59.062 47.826 0.00 0.00 0.00 3.51
278 279 3.054802 GGGTCTCTCTTGTGTGAATGGAT 60.055 47.826 0.00 0.00 0.00 3.41
279 280 2.303022 GGGTCTCTCTTGTGTGAATGGA 59.697 50.000 0.00 0.00 0.00 3.41
280 281 2.038952 TGGGTCTCTCTTGTGTGAATGG 59.961 50.000 0.00 0.00 0.00 3.16
281 282 3.407424 TGGGTCTCTCTTGTGTGAATG 57.593 47.619 0.00 0.00 0.00 2.67
282 283 5.762179 TTATGGGTCTCTCTTGTGTGAAT 57.238 39.130 0.00 0.00 0.00 2.57
283 284 5.560722 TTTATGGGTCTCTCTTGTGTGAA 57.439 39.130 0.00 0.00 0.00 3.18
284 285 5.560722 TTTTATGGGTCTCTCTTGTGTGA 57.439 39.130 0.00 0.00 0.00 3.58
304 305 6.924111 TGACAGAAGTTTTGCTCTTCTTTTT 58.076 32.000 5.60 0.00 46.09 1.94
305 306 6.515272 TGACAGAAGTTTTGCTCTTCTTTT 57.485 33.333 5.60 0.00 46.09 2.27
306 307 6.515272 TTGACAGAAGTTTTGCTCTTCTTT 57.485 33.333 5.60 0.59 46.09 2.52
307 308 6.501781 CATTGACAGAAGTTTTGCTCTTCTT 58.498 36.000 5.60 0.00 46.09 2.52
309 310 4.678742 GCATTGACAGAAGTTTTGCTCTTC 59.321 41.667 0.00 0.00 40.83 2.87
310 311 4.500375 GGCATTGACAGAAGTTTTGCTCTT 60.500 41.667 0.00 0.00 31.75 2.85
311 312 3.005155 GGCATTGACAGAAGTTTTGCTCT 59.995 43.478 0.00 0.00 31.75 4.09
312 313 3.311966 GGCATTGACAGAAGTTTTGCTC 58.688 45.455 0.00 0.00 31.75 4.26
313 314 2.036346 GGGCATTGACAGAAGTTTTGCT 59.964 45.455 0.00 0.00 31.75 3.91
314 315 2.224018 TGGGCATTGACAGAAGTTTTGC 60.224 45.455 0.00 0.00 0.00 3.68
315 316 3.731652 TGGGCATTGACAGAAGTTTTG 57.268 42.857 0.00 0.00 0.00 2.44
316 317 5.625197 GCATATGGGCATTGACAGAAGTTTT 60.625 40.000 4.56 0.00 0.00 2.43
317 318 4.142093 GCATATGGGCATTGACAGAAGTTT 60.142 41.667 4.56 0.00 0.00 2.66
318 319 3.382546 GCATATGGGCATTGACAGAAGTT 59.617 43.478 4.56 0.00 0.00 2.66
319 320 2.954318 GCATATGGGCATTGACAGAAGT 59.046 45.455 4.56 0.00 0.00 3.01
320 321 2.953648 TGCATATGGGCATTGACAGAAG 59.046 45.455 4.56 0.00 39.25 2.85
321 322 2.953648 CTGCATATGGGCATTGACAGAA 59.046 45.455 4.56 0.00 43.97 3.02
322 323 2.092267 ACTGCATATGGGCATTGACAGA 60.092 45.455 4.56 0.00 43.97 3.41
323 324 2.304092 ACTGCATATGGGCATTGACAG 58.696 47.619 4.56 3.25 43.97 3.51
324 325 2.440517 ACTGCATATGGGCATTGACA 57.559 45.000 4.56 0.00 43.97 3.58
325 326 3.806625 AAACTGCATATGGGCATTGAC 57.193 42.857 4.56 0.00 43.97 3.18
326 327 4.822685 AAAAACTGCATATGGGCATTGA 57.177 36.364 4.56 0.00 43.97 2.57
345 346 5.769484 TGCCACCTAATAACGTTGAAAAA 57.231 34.783 11.99 0.00 0.00 1.94
346 347 5.067413 TGTTGCCACCTAATAACGTTGAAAA 59.933 36.000 11.99 0.00 0.00 2.29
347 348 4.579340 TGTTGCCACCTAATAACGTTGAAA 59.421 37.500 11.99 0.00 0.00 2.69
348 349 4.135306 TGTTGCCACCTAATAACGTTGAA 58.865 39.130 11.99 0.00 0.00 2.69
349 350 3.741249 TGTTGCCACCTAATAACGTTGA 58.259 40.909 11.99 0.00 0.00 3.18
350 351 4.223659 GTTGTTGCCACCTAATAACGTTG 58.776 43.478 11.99 0.00 0.00 4.10
351 352 3.058777 CGTTGTTGCCACCTAATAACGTT 60.059 43.478 5.88 5.88 43.18 3.99
352 353 2.481185 CGTTGTTGCCACCTAATAACGT 59.519 45.455 10.26 0.00 43.18 3.99
353 354 3.111958 CGTTGTTGCCACCTAATAACG 57.888 47.619 0.00 0.00 42.83 3.18
354 355 2.726681 CGCGTTGTTGCCACCTAATAAC 60.727 50.000 0.00 0.00 0.00 1.89
355 356 1.465387 CGCGTTGTTGCCACCTAATAA 59.535 47.619 0.00 0.00 0.00 1.40
356 357 1.080298 CGCGTTGTTGCCACCTAATA 58.920 50.000 0.00 0.00 0.00 0.98
357 358 1.873165 CGCGTTGTTGCCACCTAAT 59.127 52.632 0.00 0.00 0.00 1.73
358 359 2.899044 GCGCGTTGTTGCCACCTAA 61.899 57.895 8.43 0.00 0.00 2.69
359 360 3.350612 GCGCGTTGTTGCCACCTA 61.351 61.111 8.43 0.00 0.00 3.08
365 366 4.383602 ATCCGTGCGCGTTGTTGC 62.384 61.111 19.61 0.00 36.15 4.17
366 367 2.499520 CATCCGTGCGCGTTGTTG 60.500 61.111 19.61 5.80 36.15 3.33
367 368 2.970324 ACATCCGTGCGCGTTGTT 60.970 55.556 19.61 4.39 36.15 2.83
368 369 3.711842 CACATCCGTGCGCGTTGT 61.712 61.111 19.61 17.97 36.06 3.32
396 397 4.396790 ACCATATTATCCGTGTGCGTTTTT 59.603 37.500 0.00 0.00 36.15 1.94
397 398 3.942748 ACCATATTATCCGTGTGCGTTTT 59.057 39.130 0.00 0.00 36.15 2.43
398 399 3.311322 CACCATATTATCCGTGTGCGTTT 59.689 43.478 0.00 0.00 36.15 3.60
415 416 1.515954 GATGACGACCGACCACCAT 59.484 57.895 0.00 0.00 0.00 3.55
421 423 1.227263 CCATGGGATGACGACCGAC 60.227 63.158 2.85 0.00 0.00 4.79
424 426 1.146263 GACCCATGGGATGACGACC 59.854 63.158 38.07 10.94 38.96 4.79
428 430 1.227674 GAGCGACCCATGGGATGAC 60.228 63.158 38.07 21.66 38.96 3.06
431 433 2.502492 CGAGAGCGACCCATGGGAT 61.502 63.158 38.07 21.21 40.82 3.85
434 436 4.899239 GCCGAGAGCGACCCATGG 62.899 72.222 4.14 4.14 40.82 3.66
438 440 4.162690 AATGGCCGAGAGCGACCC 62.163 66.667 0.00 0.00 45.17 4.46
439 441 2.586357 GAATGGCCGAGAGCGACC 60.586 66.667 0.00 0.00 45.17 4.79
440 442 0.811616 AATGAATGGCCGAGAGCGAC 60.812 55.000 0.00 0.00 45.17 5.19
443 445 1.602311 ATGAATGAATGGCCGAGAGC 58.398 50.000 0.00 0.00 42.60 4.09
452 454 3.385755 GGAGGGGGTGAAATGAATGAATG 59.614 47.826 0.00 0.00 0.00 2.67
453 455 3.630828 GGGAGGGGGTGAAATGAATGAAT 60.631 47.826 0.00 0.00 0.00 2.57
454 456 2.292192 GGGAGGGGGTGAAATGAATGAA 60.292 50.000 0.00 0.00 0.00 2.57
455 457 1.287739 GGGAGGGGGTGAAATGAATGA 59.712 52.381 0.00 0.00 0.00 2.57
502 508 1.804601 CGGCTTTCCTTACCGTTTCT 58.195 50.000 0.00 0.00 42.01 2.52
557 564 1.805945 CGACTCTCGGGGAAAAGCG 60.806 63.158 0.00 0.00 36.00 4.68
632 645 1.722636 GGGTGGACGGTAGCGACTAG 61.723 65.000 22.88 0.00 0.00 2.57
635 648 4.487412 CGGGTGGACGGTAGCGAC 62.487 72.222 22.88 15.24 0.00 5.19
662 675 2.883253 GTCCGCTTCTGCTCGCTC 60.883 66.667 0.00 0.00 36.97 5.03
663 676 4.785512 CGTCCGCTTCTGCTCGCT 62.786 66.667 0.00 0.00 36.97 4.93
666 679 3.184683 CTGCGTCCGCTTCTGCTC 61.185 66.667 13.31 0.00 42.51 4.26
752 776 3.106552 CGCGTGAGGAGAGAGAGG 58.893 66.667 0.00 0.00 0.00 3.69
851 883 3.146726 TAGGAATTCGGGCGAGCGG 62.147 63.158 0.00 0.00 0.00 5.52
926 973 3.737172 CCAAACGGAGCAAGCGGG 61.737 66.667 0.00 0.00 0.00 6.13
928 975 2.556287 GACCAAACGGAGCAAGCG 59.444 61.111 0.00 0.00 0.00 4.68
937 984 0.869730 CAACCTTACCGGACCAAACG 59.130 55.000 9.46 0.00 36.31 3.60
951 998 0.461135 CCAAGCAACTGCAACAACCT 59.539 50.000 4.22 0.00 45.16 3.50
961 1008 0.823460 CACCAACCAACCAAGCAACT 59.177 50.000 0.00 0.00 0.00 3.16
998 1046 2.124570 CCCAGCAGTTCCCCATCG 60.125 66.667 0.00 0.00 0.00 3.84
1063 1111 1.383803 CCAGGGGAGGAGAAGAGGG 60.384 68.421 0.00 0.00 0.00 4.30
1083 1131 2.630098 TGGATCACCAAAAATCCGCAAA 59.370 40.909 0.00 0.00 43.73 3.68
1085 1133 1.916506 TGGATCACCAAAAATCCGCA 58.083 45.000 0.00 0.00 43.73 5.69
1114 1163 0.463833 AATCGGCCGAAACCTCATCC 60.464 55.000 34.66 0.00 0.00 3.51
1117 1166 1.078708 GGAATCGGCCGAAACCTCA 60.079 57.895 34.66 7.59 0.00 3.86
1146 1195 2.156098 AGACCTTGGAGCCCTGCAA 61.156 57.895 2.29 2.29 38.59 4.08
1148 1197 2.045536 CAGACCTTGGAGCCCTGC 60.046 66.667 0.00 0.00 0.00 4.85
1158 1207 2.715763 TCTAGGAACCACCAGACCTT 57.284 50.000 0.00 0.00 42.04 3.50
1159 1208 2.472029 CATCTAGGAACCACCAGACCT 58.528 52.381 0.00 0.00 42.04 3.85
1160 1209 1.134371 GCATCTAGGAACCACCAGACC 60.134 57.143 0.00 0.00 42.04 3.85
1161 1210 1.471676 CGCATCTAGGAACCACCAGAC 60.472 57.143 0.00 0.00 42.04 3.51
1162 1211 0.824109 CGCATCTAGGAACCACCAGA 59.176 55.000 0.00 0.00 42.04 3.86
1163 1212 0.824109 TCGCATCTAGGAACCACCAG 59.176 55.000 0.00 0.00 42.04 4.00
1164 1213 1.271856 TTCGCATCTAGGAACCACCA 58.728 50.000 0.00 0.00 42.04 4.17
1184 1233 1.155155 AACCGGGAATGGGTTGCTT 59.845 52.632 6.32 0.00 45.74 3.91
1200 1249 8.553459 AATGATCATGTAAATCGATAGGGAAC 57.447 34.615 9.46 0.00 0.00 3.62
1203 1252 7.331934 ACGAAATGATCATGTAAATCGATAGGG 59.668 37.037 23.19 5.50 33.61 3.53
1204 1253 8.244494 ACGAAATGATCATGTAAATCGATAGG 57.756 34.615 23.19 0.00 33.61 2.57
1207 1256 8.088365 TCCTACGAAATGATCATGTAAATCGAT 58.912 33.333 23.19 14.86 33.61 3.59
1209 1258 7.637709 TCCTACGAAATGATCATGTAAATCG 57.362 36.000 9.46 15.49 35.36 3.34
1211 1260 9.003658 GGAATCCTACGAAATGATCATGTAAAT 57.996 33.333 9.46 2.07 0.00 1.40
1212 1261 7.170828 CGGAATCCTACGAAATGATCATGTAAA 59.829 37.037 9.46 0.00 0.00 2.01
1213 1262 6.645003 CGGAATCCTACGAAATGATCATGTAA 59.355 38.462 9.46 0.00 0.00 2.41
1216 1265 4.389992 CCGGAATCCTACGAAATGATCATG 59.610 45.833 9.46 0.00 0.00 3.07
1217 1266 4.040461 ACCGGAATCCTACGAAATGATCAT 59.960 41.667 9.46 1.18 0.00 2.45
1218 1267 3.386726 ACCGGAATCCTACGAAATGATCA 59.613 43.478 9.46 0.00 0.00 2.92
1219 1268 3.741344 CACCGGAATCCTACGAAATGATC 59.259 47.826 9.46 0.00 0.00 2.92
1220 1269 3.494398 CCACCGGAATCCTACGAAATGAT 60.494 47.826 9.46 0.00 0.00 2.45
1222 1271 2.159014 TCCACCGGAATCCTACGAAATG 60.159 50.000 9.46 0.00 0.00 2.32
1223 1272 2.112998 TCCACCGGAATCCTACGAAAT 58.887 47.619 9.46 0.00 0.00 2.17
1226 1275 1.559368 TTTCCACCGGAATCCTACGA 58.441 50.000 9.46 0.00 41.71 3.43
1227 1276 2.480845 GATTTCCACCGGAATCCTACG 58.519 52.381 9.46 0.00 41.71 3.51
1228 1277 2.480845 CGATTTCCACCGGAATCCTAC 58.519 52.381 9.46 0.00 41.71 3.18
1229 1278 2.902705 CGATTTCCACCGGAATCCTA 57.097 50.000 9.46 0.00 41.71 2.94
1264 1336 2.119457 GGCTAATTGCGCACAATAAGC 58.881 47.619 11.12 14.91 45.90 3.09
1285 1357 2.205074 AGCCTTTCGCGAACATCATAG 58.795 47.619 23.33 14.83 44.76 2.23
1290 1362 2.423577 AGTTAAGCCTTTCGCGAACAT 58.576 42.857 23.33 5.96 44.76 2.71
1291 1363 1.873698 AGTTAAGCCTTTCGCGAACA 58.126 45.000 23.33 11.96 44.76 3.18
1319 1391 2.474266 CACCAACCGAATCACGCG 59.526 61.111 3.53 3.53 41.07 6.01
1341 1413 2.171448 AGCTACTGGATCGCCTCAAAAT 59.829 45.455 0.00 0.00 34.31 1.82
1347 1419 1.418334 ATCAAGCTACTGGATCGCCT 58.582 50.000 0.00 0.00 34.31 5.52
1359 1431 3.094572 AGCTATGCAACCAAATCAAGCT 58.905 40.909 0.00 0.00 34.37 3.74
1402 1480 2.724839 GCTTTAGTGTGCCGATTGAACG 60.725 50.000 0.00 0.00 0.00 3.95
1433 1511 3.748568 GGAGACCACTCTAAAAGCAACTG 59.251 47.826 0.00 0.00 42.28 3.16
1532 1610 4.283467 AGTGACTGTGCAATAGAAGGTACA 59.717 41.667 6.26 0.00 0.00 2.90
1546 1624 2.161012 GCATCAATGTCCAGTGACTGTG 59.839 50.000 12.15 2.82 42.28 3.66
1554 1632 1.667724 GACCGAAGCATCAATGTCCAG 59.332 52.381 0.00 0.00 0.00 3.86
1572 1650 7.553044 AGCCTAGTGAAACAATAATGTAAGGAC 59.447 37.037 0.00 0.00 41.43 3.85
1587 1668 4.775780 ACACATGGTACTAGCCTAGTGAAA 59.224 41.667 14.69 0.05 39.81 2.69
1669 1750 3.498481 CCTGTCCCATACCATACCATTGG 60.498 52.174 0.00 0.00 42.82 3.16
1677 1758 2.492025 ACATGTCCTGTCCCATACCAT 58.508 47.619 0.00 0.00 29.94 3.55
1678 1759 1.965414 ACATGTCCTGTCCCATACCA 58.035 50.000 0.00 0.00 29.94 3.25
1679 1760 2.104281 GGTACATGTCCTGTCCCATACC 59.896 54.545 0.00 0.00 39.39 2.73
1785 1868 5.918011 GGTGTTTTGAATTCATCGTGCTAAA 59.082 36.000 9.40 2.09 0.00 1.85
1827 1916 4.859304 ATCAAATGTTTCTTGCTCAGCA 57.141 36.364 0.00 0.00 36.47 4.41
1828 1917 4.986659 ACAATCAAATGTTTCTTGCTCAGC 59.013 37.500 0.00 0.00 0.00 4.26
1829 1918 5.404366 CCACAATCAAATGTTTCTTGCTCAG 59.596 40.000 0.00 0.00 0.00 3.35
1830 1919 5.163426 ACCACAATCAAATGTTTCTTGCTCA 60.163 36.000 0.00 0.00 0.00 4.26
1831 1920 5.176223 CACCACAATCAAATGTTTCTTGCTC 59.824 40.000 0.00 0.00 0.00 4.26
1832 1921 5.051816 CACCACAATCAAATGTTTCTTGCT 58.948 37.500 0.00 0.00 0.00 3.91
1833 1922 4.211794 CCACCACAATCAAATGTTTCTTGC 59.788 41.667 0.00 0.00 0.00 4.01
1859 1948 8.982685 AGTATCAACAGATACGATGCTAAAATG 58.017 33.333 9.28 0.00 45.57 2.32
1871 1960 5.746245 GTCAGTGCAGAGTATCAACAGATAC 59.254 44.000 7.39 7.39 42.79 2.24
1881 1970 2.480416 GCTAAGCGTCAGTGCAGAGTAT 60.480 50.000 0.00 0.00 37.31 2.12
1907 1996 7.451255 TCAACAACAGAGGGTGATTTGAATTAT 59.549 33.333 0.00 0.00 0.00 1.28
1908 1997 6.775142 TCAACAACAGAGGGTGATTTGAATTA 59.225 34.615 0.00 0.00 0.00 1.40
1923 2012 5.913137 AATGTTTCTTGGTCAACAACAGA 57.087 34.783 8.67 0.00 36.50 3.41
1971 2060 6.152661 GGTCAGCTCAGAGTAGCAATAGATAT 59.847 42.308 0.00 0.00 45.30 1.63
1981 2070 1.476085 CAGGTGGTCAGCTCAGAGTAG 59.524 57.143 0.00 0.00 36.98 2.57
1989 2078 0.546122 TCAACAACAGGTGGTCAGCT 59.454 50.000 0.00 0.00 40.20 4.24
2118 2207 9.495572 TGACACACTTTTTAAGGAAAAACAAAT 57.504 25.926 0.00 0.00 39.16 2.32
2119 2208 8.766151 GTGACACACTTTTTAAGGAAAAACAAA 58.234 29.630 0.00 0.00 39.16 2.83
2160 2259 4.378874 CGATTCTCTTTTCCTTGACAAGCC 60.379 45.833 9.85 0.00 0.00 4.35
2181 2283 6.527423 AGAAACAATTAGTCAACCCTAACGA 58.473 36.000 0.00 0.00 30.11 3.85
2380 2483 8.579850 ACACAATTAATGACTGGTGAATATGT 57.420 30.769 0.00 0.00 0.00 2.29
2489 2602 5.416083 TGGAATTGGATAGTACACGTCAAG 58.584 41.667 0.00 0.00 0.00 3.02
2507 2620 7.402054 TGGTAGACACAGTTGAATAATGGAAT 58.598 34.615 0.00 0.00 0.00 3.01
2617 2730 2.563798 CGTTGCCCACTTGCCATGT 61.564 57.895 0.00 0.00 0.00 3.21
2768 2881 8.701908 AATGTGAATGGTAATATGCTTCTGAT 57.298 30.769 0.00 0.00 0.00 2.90
2889 3002 2.681976 GCCATTGCAGTCTGTGGTAGAT 60.682 50.000 9.16 0.00 36.07 1.98
2971 3084 7.360946 GCACAGTAATTAGGAACTGGTTGTAAG 60.361 40.741 10.15 0.00 45.94 2.34
3198 3311 5.209659 CCTACTCCCATCTTTACCACTACT 58.790 45.833 0.00 0.00 0.00 2.57
3319 3432 7.445121 TGTGGCTAACCTGAGATCATTATAAG 58.555 38.462 0.00 0.00 36.63 1.73
3526 3639 4.843220 AGAACAACAGCAAGAAATGGAG 57.157 40.909 0.00 0.00 0.00 3.86
3651 3945 3.127548 CAGGTGCATCACATAAAGGACAC 59.872 47.826 0.00 0.00 35.86 3.67
3817 4113 1.450312 GCCGGTGTTCATCCTCCAG 60.450 63.158 1.90 0.00 0.00 3.86
3819 4115 1.153349 GAGCCGGTGTTCATCCTCC 60.153 63.158 1.90 0.00 0.00 4.30
3900 4196 3.515502 AGCAGTAGAGCACCAAGTCATAA 59.484 43.478 0.00 0.00 36.85 1.90
4013 4358 2.094854 CCATGAAAGAGGCTGAAAGTGC 60.095 50.000 0.00 0.00 35.30 4.40
4022 4367 4.222124 TCTTAGGTTCCATGAAAGAGGC 57.778 45.455 0.00 0.00 0.00 4.70
4121 4466 6.825213 TGTCAAGGAGAATATTGGATGTCTTG 59.175 38.462 0.00 0.00 0.00 3.02
4389 4759 0.108186 TGTGCAGAATACTGGCTCGG 60.108 55.000 0.00 0.00 43.62 4.63
4450 4823 2.713011 CTCTGCGCTAACATTCAATGC 58.287 47.619 9.73 0.00 0.00 3.56
4542 4939 2.225727 CAGCAACAGATGATGCGCATAT 59.774 45.455 25.40 16.57 46.60 1.78
4612 5009 6.777091 ACATGGGATGCATTTATACTGCTTTA 59.223 34.615 0.00 0.00 40.34 1.85
4614 5011 5.142639 ACATGGGATGCATTTATACTGCTT 58.857 37.500 0.00 2.35 40.34 3.91
4615 5012 4.733165 ACATGGGATGCATTTATACTGCT 58.267 39.130 0.00 0.00 40.34 4.24
4631 5028 3.900966 TCAATCAGAGTCTGACATGGG 57.099 47.619 24.93 12.36 43.63 4.00
4641 5038 7.437713 TGGGTGTTAGATATTCAATCAGAGT 57.562 36.000 0.00 0.00 0.00 3.24
4700 5099 5.426504 TCACAAAAGAAAAGGTACACCGTA 58.573 37.500 0.00 0.00 42.08 4.02
4701 5100 4.263435 TCACAAAAGAAAAGGTACACCGT 58.737 39.130 0.00 0.00 42.08 4.83
4730 5129 7.648142 ACATAGTTTGTATTCACACCTTTGTG 58.352 34.615 0.00 0.00 45.08 3.33
4862 5264 0.393537 ACCAGAAGGCAGCATAGCAC 60.394 55.000 0.00 0.00 39.06 4.40
4969 5396 7.519032 TCCCACAACAAAGTAAATTAAGAGG 57.481 36.000 0.00 0.00 0.00 3.69
5023 5497 5.277601 TGTTATGAAAAAGTAGAGCACGC 57.722 39.130 0.00 0.00 0.00 5.34
5025 5499 9.556030 GGTAAATGTTATGAAAAAGTAGAGCAC 57.444 33.333 0.00 0.00 0.00 4.40
5027 5501 7.908601 CGGGTAAATGTTATGAAAAAGTAGAGC 59.091 37.037 0.00 0.00 0.00 4.09
5053 5527 2.343843 CGTATGCTGAATATGAGCTCGC 59.656 50.000 9.64 4.87 37.35 5.03
5054 5528 3.826466 TCGTATGCTGAATATGAGCTCG 58.174 45.455 9.64 9.49 37.35 5.03
5072 5546 7.825681 TGATTTGTTAAATGGATGTTCATCGT 58.174 30.769 6.70 0.00 0.00 3.73
5073 5547 8.586273 GTTGATTTGTTAAATGGATGTTCATCG 58.414 33.333 6.70 0.00 0.00 3.84
5142 5618 0.116342 TCTCCAGAAGCACTACCCCA 59.884 55.000 0.00 0.00 0.00 4.96
5175 5651 0.240945 GGTTCTTGTCAATGGCACGG 59.759 55.000 0.00 0.00 0.00 4.94
5178 5654 1.234821 GACGGTTCTTGTCAATGGCA 58.765 50.000 0.00 0.00 36.37 4.92
5319 5795 3.586461 CTCGACAGCCAGTGCAGCT 62.586 63.158 0.00 0.00 42.70 4.24
5423 5899 2.266055 GGTCTGCCGGTCTTCTGG 59.734 66.667 1.90 0.00 42.72 3.86
5424 5900 2.266055 GGGTCTGCCGGTCTTCTG 59.734 66.667 1.90 0.00 34.97 3.02
5425 5901 2.203788 TGGGTCTGCCGGTCTTCT 60.204 61.111 1.90 0.00 34.97 2.85
5426 5902 2.266055 CTGGGTCTGCCGGTCTTC 59.734 66.667 1.90 0.00 34.97 2.87
5427 5903 4.021925 GCTGGGTCTGCCGGTCTT 62.022 66.667 1.90 0.00 34.97 3.01
5433 5909 2.045536 CTTCTGGCTGGGTCTGCC 60.046 66.667 8.57 8.57 46.46 4.85
5434 5910 1.376553 GTCTTCTGGCTGGGTCTGC 60.377 63.158 0.00 0.00 0.00 4.26
5435 5911 1.298014 GGTCTTCTGGCTGGGTCTG 59.702 63.158 0.00 0.00 0.00 3.51
5436 5912 2.286523 CGGTCTTCTGGCTGGGTCT 61.287 63.158 0.00 0.00 0.00 3.85
5437 5913 2.266055 CGGTCTTCTGGCTGGGTC 59.734 66.667 0.00 0.00 0.00 4.46
5438 5914 3.322466 CCGGTCTTCTGGCTGGGT 61.322 66.667 0.00 0.00 32.93 4.51
5623 6099 2.681778 CAGGCTCAGACTCGGGGT 60.682 66.667 0.00 0.00 0.00 4.95
5624 6100 0.970937 TAACAGGCTCAGACTCGGGG 60.971 60.000 0.00 0.00 0.00 5.73
5764 9569 1.852942 TGCAACACGAACTCAGACTC 58.147 50.000 0.00 0.00 0.00 3.36
5778 9583 1.154150 GCACGAGCTTGGATGCAAC 60.154 57.895 10.86 0.00 38.00 4.17
5779 9584 2.334946 GGCACGAGCTTGGATGCAA 61.335 57.895 16.16 0.00 39.92 4.08
5839 9644 3.173965 ACTCCCTCCGTCCCATATTATG 58.826 50.000 0.00 0.00 0.00 1.90
5840 9645 3.562108 ACTCCCTCCGTCCCATATTAT 57.438 47.619 0.00 0.00 0.00 1.28
5841 9646 3.501019 GGTACTCCCTCCGTCCCATATTA 60.501 52.174 0.00 0.00 0.00 0.98
5842 9647 2.606378 GTACTCCCTCCGTCCCATATT 58.394 52.381 0.00 0.00 0.00 1.28
5843 9648 1.203149 GGTACTCCCTCCGTCCCATAT 60.203 57.143 0.00 0.00 0.00 1.78
5844 9649 0.186873 GGTACTCCCTCCGTCCCATA 59.813 60.000 0.00 0.00 0.00 2.74
5845 9650 1.075450 GGTACTCCCTCCGTCCCAT 60.075 63.158 0.00 0.00 0.00 4.00
5846 9651 1.882189 ATGGTACTCCCTCCGTCCCA 61.882 60.000 0.00 0.00 0.00 4.37
5847 9652 0.186873 TATGGTACTCCCTCCGTCCC 59.813 60.000 0.00 0.00 0.00 4.46
5848 9653 2.305858 ATATGGTACTCCCTCCGTCC 57.694 55.000 0.00 0.00 0.00 4.79
5849 9654 3.952967 GGATATATGGTACTCCCTCCGTC 59.047 52.174 0.00 0.00 0.00 4.79
5850 9655 3.335786 TGGATATATGGTACTCCCTCCGT 59.664 47.826 0.00 0.00 0.00 4.69
5851 9656 3.954904 CTGGATATATGGTACTCCCTCCG 59.045 52.174 0.00 0.00 0.00 4.63
5852 9657 4.712337 CACTGGATATATGGTACTCCCTCC 59.288 50.000 0.00 0.00 0.00 4.30
5853 9658 5.580998 TCACTGGATATATGGTACTCCCTC 58.419 45.833 0.00 0.00 0.00 4.30
5854 9659 5.616975 TCACTGGATATATGGTACTCCCT 57.383 43.478 0.00 0.00 0.00 4.20
5855 9660 6.681729 TTTCACTGGATATATGGTACTCCC 57.318 41.667 0.00 0.00 0.00 4.30
5869 9674 8.491045 TCATACCACTGATATATTTCACTGGA 57.509 34.615 20.68 10.28 34.82 3.86
5870 9675 9.730705 AATCATACCACTGATATATTTCACTGG 57.269 33.333 15.45 15.45 34.79 4.00
5878 9683 8.670521 TCACCAGAATCATACCACTGATATAT 57.329 34.615 0.00 0.00 34.79 0.86
5916 9721 0.178987 TAAGCTGACGCCCCCAAAAA 60.179 50.000 0.00 0.00 36.60 1.94
5917 9722 0.608035 CTAAGCTGACGCCCCCAAAA 60.608 55.000 0.00 0.00 36.60 2.44
5918 9723 1.002624 CTAAGCTGACGCCCCCAAA 60.003 57.895 0.00 0.00 36.60 3.28
5919 9724 2.668632 CTAAGCTGACGCCCCCAA 59.331 61.111 0.00 0.00 36.60 4.12
5920 9725 4.096003 GCTAAGCTGACGCCCCCA 62.096 66.667 0.00 0.00 36.60 4.96
5921 9726 4.096003 TGCTAAGCTGACGCCCCC 62.096 66.667 0.00 0.00 36.60 5.40
5922 9727 2.820037 GTGCTAAGCTGACGCCCC 60.820 66.667 0.00 0.00 36.60 5.80
5961 9766 1.005450 GTGGGCTTTCAATCCCCTACA 59.995 52.381 0.00 0.00 41.92 2.74
5962 9767 1.685180 GGTGGGCTTTCAATCCCCTAC 60.685 57.143 0.00 0.00 41.92 3.18
5963 9768 0.629058 GGTGGGCTTTCAATCCCCTA 59.371 55.000 0.00 0.00 41.92 3.53
5965 9770 0.544120 TTGGTGGGCTTTCAATCCCC 60.544 55.000 0.00 0.00 41.92 4.81
5967 9772 1.001974 GGTTTGGTGGGCTTTCAATCC 59.998 52.381 0.00 0.00 0.00 3.01
5968 9773 1.336795 CGGTTTGGTGGGCTTTCAATC 60.337 52.381 0.00 0.00 0.00 2.67
5969 9774 0.678950 CGGTTTGGTGGGCTTTCAAT 59.321 50.000 0.00 0.00 0.00 2.57
5970 9775 0.395862 TCGGTTTGGTGGGCTTTCAA 60.396 50.000 0.00 0.00 0.00 2.69
5971 9776 0.395862 TTCGGTTTGGTGGGCTTTCA 60.396 50.000 0.00 0.00 0.00 2.69
5972 9777 0.031585 GTTCGGTTTGGTGGGCTTTC 59.968 55.000 0.00 0.00 0.00 2.62
5973 9778 0.684805 TGTTCGGTTTGGTGGGCTTT 60.685 50.000 0.00 0.00 0.00 3.51
5974 9779 0.684805 TTGTTCGGTTTGGTGGGCTT 60.685 50.000 0.00 0.00 0.00 4.35
5975 9780 1.076632 TTGTTCGGTTTGGTGGGCT 60.077 52.632 0.00 0.00 0.00 5.19
5976 9781 1.362355 CTTGTTCGGTTTGGTGGGC 59.638 57.895 0.00 0.00 0.00 5.36
5977 9782 1.362355 GCTTGTTCGGTTTGGTGGG 59.638 57.895 0.00 0.00 0.00 4.61
5978 9783 1.362355 GGCTTGTTCGGTTTGGTGG 59.638 57.895 0.00 0.00 0.00 4.61
5979 9784 1.362355 GGGCTTGTTCGGTTTGGTG 59.638 57.895 0.00 0.00 0.00 4.17
5980 9785 2.190841 CGGGCTTGTTCGGTTTGGT 61.191 57.895 0.00 0.00 0.00 3.67
5981 9786 2.642700 CGGGCTTGTTCGGTTTGG 59.357 61.111 0.00 0.00 0.00 3.28
5982 9787 1.852067 CTCCGGGCTTGTTCGGTTTG 61.852 60.000 0.00 0.00 45.79 2.93
5983 9788 1.599797 CTCCGGGCTTGTTCGGTTT 60.600 57.895 0.00 0.00 45.79 3.27
5984 9789 2.032071 CTCCGGGCTTGTTCGGTT 59.968 61.111 0.00 0.00 45.79 4.44
5985 9790 4.016706 CCTCCGGGCTTGTTCGGT 62.017 66.667 0.00 0.00 45.79 4.69
5986 9791 4.778143 CCCTCCGGGCTTGTTCGG 62.778 72.222 0.00 0.00 46.89 4.30
5987 9792 3.702048 TCCCTCCGGGCTTGTTCG 61.702 66.667 0.00 0.00 43.94 3.95
5988 9793 2.046217 GTCCCTCCGGGCTTGTTC 60.046 66.667 0.00 0.00 43.94 3.18
5989 9794 2.852075 TGTCCCTCCGGGCTTGTT 60.852 61.111 0.00 0.00 43.94 2.83
5990 9795 3.637273 GTGTCCCTCCGGGCTTGT 61.637 66.667 0.00 0.00 43.94 3.16
5991 9796 1.622607 TATGTGTCCCTCCGGGCTTG 61.623 60.000 0.00 0.00 43.94 4.01
5992 9797 0.694444 ATATGTGTCCCTCCGGGCTT 60.694 55.000 0.00 0.00 43.94 4.35
5993 9798 1.074471 ATATGTGTCCCTCCGGGCT 60.074 57.895 0.00 0.00 43.94 5.19
5994 9799 1.071471 CATATGTGTCCCTCCGGGC 59.929 63.158 0.00 0.00 43.94 6.13
5995 9800 1.071471 GCATATGTGTCCCTCCGGG 59.929 63.158 0.00 0.00 46.11 5.73
5996 9801 1.071471 GGCATATGTGTCCCTCCGG 59.929 63.158 4.29 0.00 0.00 5.14
5997 9802 0.180171 TTGGCATATGTGTCCCTCCG 59.820 55.000 4.29 0.00 0.00 4.63
5998 9803 2.233271 CATTGGCATATGTGTCCCTCC 58.767 52.381 4.29 0.00 0.00 4.30
5999 9804 2.620115 CACATTGGCATATGTGTCCCTC 59.380 50.000 23.13 0.00 46.53 4.30
6000 9805 2.658285 CACATTGGCATATGTGTCCCT 58.342 47.619 23.13 0.96 46.53 4.20
6006 9811 4.032310 ACAAATCCCACATTGGCATATGT 58.968 39.130 4.29 8.77 39.27 2.29
6007 9812 4.099727 TGACAAATCCCACATTGGCATATG 59.900 41.667 0.00 0.00 39.57 1.78
6008 9813 4.099881 GTGACAAATCCCACATTGGCATAT 59.900 41.667 0.00 0.00 45.64 1.78
6009 9814 3.446873 GTGACAAATCCCACATTGGCATA 59.553 43.478 0.00 0.00 45.64 3.14
6010 9815 2.234414 GTGACAAATCCCACATTGGCAT 59.766 45.455 0.00 0.00 45.64 4.40
6100 9905 2.032924 GCGGGCAATCCTATTTGTACAC 59.967 50.000 0.00 0.00 0.00 2.90
6101 9906 2.092646 AGCGGGCAATCCTATTTGTACA 60.093 45.455 0.00 0.00 0.00 2.90
6172 10026 1.076923 GCTCCGGTAGAGTCAGGGA 60.077 63.158 0.00 0.00 45.21 4.20
6178 10032 2.396955 CGTCGTGCTCCGGTAGAGT 61.397 63.158 0.00 0.00 45.21 3.24
6489 10356 2.357034 GCAAGTTCGAGGCCACGA 60.357 61.111 21.89 21.89 40.55 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.