Multiple sequence alignment - TraesCS5A01G480500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G480500 chr5A 100.000 3717 0 0 1331 5047 653410710 653406994 0.000000e+00 6865.0
1 TraesCS5A01G480500 chr5A 100.000 1067 0 0 1 1067 653412040 653410974 0.000000e+00 1971.0
2 TraesCS5A01G480500 chr5A 95.932 295 12 0 1 295 170713320 170713026 3.530000e-131 479.0
3 TraesCS5A01G480500 chr5D 94.223 3756 145 41 1338 5047 526295583 526291854 0.000000e+00 5668.0
4 TraesCS5A01G480500 chr5D 94.915 295 15 0 1 295 315097846 315098140 3.560000e-126 462.0
5 TraesCS5A01G480500 chr5D 89.015 264 14 5 805 1067 526295882 526295633 3.790000e-81 313.0
6 TraesCS5A01G480500 chr5B 87.683 2046 168 45 2243 4235 661361255 661359241 0.000000e+00 2305.0
7 TraesCS5A01G480500 chr5B 91.479 845 55 12 1336 2173 661362116 661361282 0.000000e+00 1146.0
8 TraesCS5A01G480500 chr5B 91.328 542 35 9 4506 5047 661358679 661358150 0.000000e+00 730.0
9 TraesCS5A01G480500 chr5B 87.425 501 59 4 292 790 602637860 602637362 1.580000e-159 573.0
10 TraesCS5A01G480500 chr5B 88.415 328 24 8 4205 4522 661359237 661358914 2.850000e-102 383.0
11 TraesCS5A01G480500 chr5B 90.494 263 21 3 805 1067 661362435 661362177 1.350000e-90 344.0
12 TraesCS5A01G480500 chr3B 87.824 501 56 4 288 787 707141678 707141182 2.620000e-162 582.0
13 TraesCS5A01G480500 chr7D 87.052 502 57 7 289 786 463872270 463872767 1.230000e-155 560.0
14 TraesCS5A01G480500 chr7D 82.236 501 85 4 288 786 544564061 544564559 3.610000e-116 429.0
15 TraesCS5A01G480500 chr1B 86.535 505 64 4 288 790 74822641 74823143 2.050000e-153 553.0
16 TraesCS5A01G480500 chr4A 96.949 295 9 0 1 295 34694103 34693809 3.510000e-136 496.0
17 TraesCS5A01G480500 chr2B 84.524 504 71 6 288 786 643411877 643411376 4.540000e-135 492.0
18 TraesCS5A01G480500 chr7A 96.610 295 10 0 1 295 634862776 634863070 1.630000e-134 490.0
19 TraesCS5A01G480500 chr7A 95.593 295 13 0 1 295 238948209 238947915 1.640000e-129 473.0
20 TraesCS5A01G480500 chr7A 83.267 502 80 4 288 787 79132045 79132544 4.600000e-125 459.0
21 TraesCS5A01G480500 chr3A 96.246 293 11 0 1 293 480492613 480492905 9.830000e-132 481.0
22 TraesCS5A01G480500 chr1A 95.593 295 13 0 1 295 23736846 23737140 1.640000e-129 473.0
23 TraesCS5A01G480500 chr6D 94.915 295 15 0 1 295 341224982 341225276 3.560000e-126 462.0
24 TraesCS5A01G480500 chr1D 94.915 295 15 0 1 295 383293688 383293982 3.560000e-126 462.0
25 TraesCS5A01G480500 chr3D 83.234 501 80 4 288 786 31894537 31895035 1.660000e-124 457.0
26 TraesCS5A01G480500 chr4B 74.950 499 116 9 294 787 481582494 481582000 2.370000e-53 220.0
27 TraesCS5A01G480500 chr2A 74.784 464 65 30 1660 2109 689715209 689715634 1.450000e-35 161.0
28 TraesCS5A01G480500 chr6B 80.508 118 20 2 1540 1654 716156858 716156741 2.500000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G480500 chr5A 653406994 653412040 5046 True 4418.0 6865 100.0000 1 5047 2 chr5A.!!$R2 5046
1 TraesCS5A01G480500 chr5D 526291854 526295882 4028 True 2990.5 5668 91.6190 805 5047 2 chr5D.!!$R1 4242
2 TraesCS5A01G480500 chr5B 661358150 661362435 4285 True 981.6 2305 89.8798 805 5047 5 chr5B.!!$R2 4242
3 TraesCS5A01G480500 chr1B 74822641 74823143 502 False 553.0 553 86.5350 288 790 1 chr1B.!!$F1 502
4 TraesCS5A01G480500 chr2B 643411376 643411877 501 True 492.0 492 84.5240 288 786 1 chr2B.!!$R1 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
860 877 0.034896 GTGTCACCACTTCCCACGAT 59.965 55.0 0.00 0.0 38.61 3.73 F
972 990 0.037734 CAGTAGGTGGGGTTTGGGTC 59.962 60.0 0.00 0.0 0.00 4.46 F
1692 1731 0.316204 ATTTGCTTGTGCTGCCTGTC 59.684 50.0 0.00 0.0 40.48 3.51 F
3501 3589 0.251916 TGCAGAGGAAATGGTACCGG 59.748 55.0 7.57 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 1792 1.335597 CGACACTCCTCGTTGTAAGCA 60.336 52.381 0.00 0.00 0.00 3.91 R
2549 2607 2.297315 CGGCATAGCTACCAAGATCAGA 59.703 50.000 0.00 0.00 0.00 3.27 R
3543 3631 0.179089 CTCTGATTCCAGGACCAGCG 60.179 60.000 11.61 4.06 40.76 5.18 R
4551 4958 0.030638 TTTTGACCTTCGCTGCTTGC 59.969 50.000 0.00 0.00 38.57 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.399245 CCTACAAGTTCCTAGAGCCTATATC 57.601 44.000 0.00 0.00 0.00 1.63
25 26 6.948886 CCTACAAGTTCCTAGAGCCTATATCA 59.051 42.308 0.00 0.00 0.00 2.15
26 27 7.617723 CCTACAAGTTCCTAGAGCCTATATCAT 59.382 40.741 0.00 0.00 0.00 2.45
27 28 9.688091 CTACAAGTTCCTAGAGCCTATATCATA 57.312 37.037 0.00 0.00 0.00 2.15
28 29 8.356000 ACAAGTTCCTAGAGCCTATATCATAC 57.644 38.462 0.00 0.00 0.00 2.39
29 30 7.950684 ACAAGTTCCTAGAGCCTATATCATACA 59.049 37.037 0.00 0.00 0.00 2.29
30 31 8.976353 CAAGTTCCTAGAGCCTATATCATACAT 58.024 37.037 0.00 0.00 0.00 2.29
31 32 8.760980 AGTTCCTAGAGCCTATATCATACATC 57.239 38.462 0.00 0.00 0.00 3.06
32 33 8.340002 AGTTCCTAGAGCCTATATCATACATCA 58.660 37.037 0.00 0.00 0.00 3.07
33 34 8.972127 GTTCCTAGAGCCTATATCATACATCAA 58.028 37.037 0.00 0.00 0.00 2.57
34 35 9.547279 TTCCTAGAGCCTATATCATACATCAAA 57.453 33.333 0.00 0.00 0.00 2.69
35 36 9.547279 TCCTAGAGCCTATATCATACATCAAAA 57.453 33.333 0.00 0.00 0.00 2.44
36 37 9.593134 CCTAGAGCCTATATCATACATCAAAAC 57.407 37.037 0.00 0.00 0.00 2.43
64 65 9.369904 ACTTTTGACCATATAAATTTGACATGC 57.630 29.630 0.00 0.00 0.00 4.06
65 66 9.368674 CTTTTGACCATATAAATTTGACATGCA 57.631 29.630 0.00 0.00 0.00 3.96
66 67 9.716531 TTTTGACCATATAAATTTGACATGCAA 57.283 25.926 0.00 0.00 33.88 4.08
67 68 8.929827 TTGACCATATAAATTTGACATGCAAG 57.070 30.769 0.00 0.00 37.87 4.01
68 69 6.979817 TGACCATATAAATTTGACATGCAAGC 59.020 34.615 0.00 0.00 37.87 4.01
69 70 7.116075 ACCATATAAATTTGACATGCAAGCT 57.884 32.000 0.00 0.00 37.87 3.74
70 71 7.205297 ACCATATAAATTTGACATGCAAGCTC 58.795 34.615 0.00 0.00 37.87 4.09
71 72 7.147863 ACCATATAAATTTGACATGCAAGCTCA 60.148 33.333 0.00 0.00 37.87 4.26
72 73 7.707464 CCATATAAATTTGACATGCAAGCTCAA 59.293 33.333 0.00 0.00 37.87 3.02
73 74 8.752254 CATATAAATTTGACATGCAAGCTCAAG 58.248 33.333 0.00 0.00 37.87 3.02
74 75 4.859304 AATTTGACATGCAAGCTCAAGA 57.141 36.364 0.00 0.00 37.87 3.02
75 76 4.859304 ATTTGACATGCAAGCTCAAGAA 57.141 36.364 0.00 0.00 37.87 2.52
76 77 3.631145 TTGACATGCAAGCTCAAGAAC 57.369 42.857 0.00 0.00 31.55 3.01
77 78 2.574450 TGACATGCAAGCTCAAGAACA 58.426 42.857 0.00 0.00 0.00 3.18
78 79 2.551032 TGACATGCAAGCTCAAGAACAG 59.449 45.455 0.00 0.00 0.00 3.16
79 80 1.884579 ACATGCAAGCTCAAGAACAGG 59.115 47.619 0.00 0.00 0.00 4.00
80 81 1.201647 CATGCAAGCTCAAGAACAGGG 59.798 52.381 0.00 0.00 0.00 4.45
81 82 0.183492 TGCAAGCTCAAGAACAGGGT 59.817 50.000 0.00 0.00 0.00 4.34
82 83 0.877743 GCAAGCTCAAGAACAGGGTC 59.122 55.000 0.00 0.00 0.00 4.46
83 84 1.815408 GCAAGCTCAAGAACAGGGTCA 60.815 52.381 0.00 0.00 0.00 4.02
84 85 2.787994 CAAGCTCAAGAACAGGGTCAT 58.212 47.619 0.00 0.00 0.00 3.06
85 86 2.746362 CAAGCTCAAGAACAGGGTCATC 59.254 50.000 0.00 0.00 0.00 2.92
86 87 2.264455 AGCTCAAGAACAGGGTCATCT 58.736 47.619 0.00 0.00 0.00 2.90
87 88 3.445008 AGCTCAAGAACAGGGTCATCTA 58.555 45.455 0.00 0.00 0.00 1.98
88 89 3.840666 AGCTCAAGAACAGGGTCATCTAA 59.159 43.478 0.00 0.00 0.00 2.10
89 90 4.081198 AGCTCAAGAACAGGGTCATCTAAG 60.081 45.833 0.00 0.00 0.00 2.18
90 91 4.187694 CTCAAGAACAGGGTCATCTAAGC 58.812 47.826 0.00 0.00 0.00 3.09
91 92 3.582647 TCAAGAACAGGGTCATCTAAGCA 59.417 43.478 0.00 0.00 0.00 3.91
92 93 3.902881 AGAACAGGGTCATCTAAGCAG 57.097 47.619 0.00 0.00 0.00 4.24
93 94 2.093235 AGAACAGGGTCATCTAAGCAGC 60.093 50.000 0.00 0.00 0.00 5.25
94 95 1.279496 ACAGGGTCATCTAAGCAGCA 58.721 50.000 0.00 0.00 0.00 4.41
95 96 1.630369 ACAGGGTCATCTAAGCAGCAA 59.370 47.619 0.00 0.00 0.00 3.91
96 97 2.040278 ACAGGGTCATCTAAGCAGCAAA 59.960 45.455 0.00 0.00 0.00 3.68
97 98 3.084039 CAGGGTCATCTAAGCAGCAAAA 58.916 45.455 0.00 0.00 0.00 2.44
98 99 3.507233 CAGGGTCATCTAAGCAGCAAAAA 59.493 43.478 0.00 0.00 0.00 1.94
99 100 4.159135 CAGGGTCATCTAAGCAGCAAAAAT 59.841 41.667 0.00 0.00 0.00 1.82
100 101 5.357878 CAGGGTCATCTAAGCAGCAAAAATA 59.642 40.000 0.00 0.00 0.00 1.40
101 102 6.040166 CAGGGTCATCTAAGCAGCAAAAATAT 59.960 38.462 0.00 0.00 0.00 1.28
102 103 6.040166 AGGGTCATCTAAGCAGCAAAAATATG 59.960 38.462 0.00 0.00 0.00 1.78
103 104 5.689068 GGTCATCTAAGCAGCAAAAATATGC 59.311 40.000 0.00 0.00 46.78 3.14
117 118 8.537729 GCAAAAATATGCAATGAATAAAGCAC 57.462 30.769 0.00 0.00 45.70 4.40
118 119 8.392612 GCAAAAATATGCAATGAATAAAGCACT 58.607 29.630 0.00 0.00 45.70 4.40
123 124 9.956720 AATATGCAATGAATAAAGCACTAGAAC 57.043 29.630 0.00 0.00 40.14 3.01
124 125 6.816134 TGCAATGAATAAAGCACTAGAACA 57.184 33.333 0.00 0.00 31.05 3.18
125 126 7.213216 TGCAATGAATAAAGCACTAGAACAA 57.787 32.000 0.00 0.00 31.05 2.83
126 127 7.656412 TGCAATGAATAAAGCACTAGAACAAA 58.344 30.769 0.00 0.00 31.05 2.83
127 128 8.140628 TGCAATGAATAAAGCACTAGAACAAAA 58.859 29.630 0.00 0.00 31.05 2.44
128 129 8.977505 GCAATGAATAAAGCACTAGAACAAAAA 58.022 29.630 0.00 0.00 0.00 1.94
136 137 8.871686 AAAGCACTAGAACAAAAACTAATTGG 57.128 30.769 0.00 0.00 32.02 3.16
137 138 7.817418 AGCACTAGAACAAAAACTAATTGGA 57.183 32.000 0.00 0.00 32.02 3.53
138 139 7.649057 AGCACTAGAACAAAAACTAATTGGAC 58.351 34.615 0.00 0.00 32.02 4.02
139 140 6.861572 GCACTAGAACAAAAACTAATTGGACC 59.138 38.462 0.00 0.00 32.02 4.46
140 141 7.469456 GCACTAGAACAAAAACTAATTGGACCA 60.469 37.037 0.00 0.00 32.02 4.02
141 142 8.576442 CACTAGAACAAAAACTAATTGGACCAT 58.424 33.333 0.00 0.00 32.02 3.55
142 143 9.143155 ACTAGAACAAAAACTAATTGGACCATT 57.857 29.630 0.00 0.00 32.02 3.16
143 144 9.410556 CTAGAACAAAAACTAATTGGACCATTG 57.589 33.333 0.00 0.00 32.02 2.82
144 145 7.216494 AGAACAAAAACTAATTGGACCATTGG 58.784 34.615 0.00 0.00 32.02 3.16
145 146 6.739331 ACAAAAACTAATTGGACCATTGGA 57.261 33.333 10.37 0.00 32.02 3.53
146 147 6.758254 ACAAAAACTAATTGGACCATTGGAG 58.242 36.000 10.37 0.00 32.02 3.86
147 148 6.165577 CAAAAACTAATTGGACCATTGGAGG 58.834 40.000 10.37 0.00 0.00 4.30
148 149 4.946160 AACTAATTGGACCATTGGAGGA 57.054 40.909 10.37 0.00 0.00 3.71
149 150 4.510167 ACTAATTGGACCATTGGAGGAG 57.490 45.455 10.37 0.00 0.00 3.69
150 151 3.852578 ACTAATTGGACCATTGGAGGAGT 59.147 43.478 10.37 0.13 0.00 3.85
151 152 3.372440 AATTGGACCATTGGAGGAGTC 57.628 47.619 10.37 0.00 0.00 3.36
152 153 1.741028 TTGGACCATTGGAGGAGTCA 58.259 50.000 10.37 0.00 0.00 3.41
153 154 0.984230 TGGACCATTGGAGGAGTCAC 59.016 55.000 10.37 0.00 0.00 3.67
154 155 0.984230 GGACCATTGGAGGAGTCACA 59.016 55.000 10.37 0.00 0.00 3.58
155 156 1.561542 GGACCATTGGAGGAGTCACAT 59.438 52.381 10.37 0.00 0.00 3.21
156 157 2.771943 GGACCATTGGAGGAGTCACATA 59.228 50.000 10.37 0.00 0.00 2.29
157 158 3.432326 GGACCATTGGAGGAGTCACATAC 60.432 52.174 10.37 0.00 0.00 2.39
158 159 2.505819 ACCATTGGAGGAGTCACATACC 59.494 50.000 10.37 0.00 0.00 2.73
159 160 2.505407 CCATTGGAGGAGTCACATACCA 59.495 50.000 0.00 0.00 0.00 3.25
160 161 3.054434 CCATTGGAGGAGTCACATACCAA 60.054 47.826 0.00 0.00 40.74 3.67
161 162 3.981071 TTGGAGGAGTCACATACCAAG 57.019 47.619 0.00 0.00 34.15 3.61
162 163 2.187958 TGGAGGAGTCACATACCAAGG 58.812 52.381 0.00 0.00 0.00 3.61
163 164 2.225522 TGGAGGAGTCACATACCAAGGA 60.226 50.000 0.00 0.00 0.00 3.36
164 165 2.838202 GGAGGAGTCACATACCAAGGAA 59.162 50.000 0.00 0.00 0.00 3.36
165 166 3.369576 GGAGGAGTCACATACCAAGGAAC 60.370 52.174 0.00 0.00 0.00 3.62
166 167 3.248024 AGGAGTCACATACCAAGGAACA 58.752 45.455 0.00 0.00 0.00 3.18
167 168 3.650942 AGGAGTCACATACCAAGGAACAA 59.349 43.478 0.00 0.00 0.00 2.83
168 169 4.289672 AGGAGTCACATACCAAGGAACAAT 59.710 41.667 0.00 0.00 0.00 2.71
169 170 4.636206 GGAGTCACATACCAAGGAACAATC 59.364 45.833 0.00 0.00 0.00 2.67
170 171 4.589908 AGTCACATACCAAGGAACAATCC 58.410 43.478 0.00 0.00 46.98 3.01
179 180 3.065462 GGAACAATCCCCCAAAGCA 57.935 52.632 0.00 0.00 40.10 3.91
180 181 0.897621 GGAACAATCCCCCAAAGCAG 59.102 55.000 0.00 0.00 40.10 4.24
181 182 1.632589 GAACAATCCCCCAAAGCAGT 58.367 50.000 0.00 0.00 0.00 4.40
182 183 1.970640 GAACAATCCCCCAAAGCAGTT 59.029 47.619 0.00 0.00 0.00 3.16
183 184 2.101640 ACAATCCCCCAAAGCAGTTT 57.898 45.000 0.00 0.00 0.00 2.66
184 185 2.407562 ACAATCCCCCAAAGCAGTTTT 58.592 42.857 0.00 0.00 0.00 2.43
185 186 2.104622 ACAATCCCCCAAAGCAGTTTTG 59.895 45.455 2.80 2.80 44.67 2.44
186 187 2.101640 ATCCCCCAAAGCAGTTTTGT 57.898 45.000 8.73 0.00 43.78 2.83
187 188 1.118838 TCCCCCAAAGCAGTTTTGTG 58.881 50.000 8.73 0.00 43.78 3.33
188 189 1.118838 CCCCCAAAGCAGTTTTGTGA 58.881 50.000 8.73 0.00 43.78 3.58
189 190 1.069049 CCCCCAAAGCAGTTTTGTGAG 59.931 52.381 8.73 0.00 43.78 3.51
190 191 2.031120 CCCCAAAGCAGTTTTGTGAGA 58.969 47.619 8.73 0.00 43.78 3.27
191 192 2.035066 CCCCAAAGCAGTTTTGTGAGAG 59.965 50.000 8.73 0.00 43.78 3.20
192 193 2.035066 CCCAAAGCAGTTTTGTGAGAGG 59.965 50.000 8.73 0.00 43.78 3.69
193 194 2.689983 CCAAAGCAGTTTTGTGAGAGGT 59.310 45.455 8.73 0.00 43.78 3.85
194 195 3.489738 CCAAAGCAGTTTTGTGAGAGGTG 60.490 47.826 8.73 0.00 43.78 4.00
195 196 1.312815 AGCAGTTTTGTGAGAGGTGC 58.687 50.000 0.00 0.00 0.00 5.01
196 197 1.133976 AGCAGTTTTGTGAGAGGTGCT 60.134 47.619 0.00 0.00 34.99 4.40
197 198 1.678101 GCAGTTTTGTGAGAGGTGCTT 59.322 47.619 0.00 0.00 0.00 3.91
198 199 2.099756 GCAGTTTTGTGAGAGGTGCTTT 59.900 45.455 0.00 0.00 0.00 3.51
199 200 3.699067 CAGTTTTGTGAGAGGTGCTTTG 58.301 45.455 0.00 0.00 0.00 2.77
200 201 3.378112 CAGTTTTGTGAGAGGTGCTTTGA 59.622 43.478 0.00 0.00 0.00 2.69
201 202 3.629398 AGTTTTGTGAGAGGTGCTTTGAG 59.371 43.478 0.00 0.00 0.00 3.02
202 203 1.597742 TTGTGAGAGGTGCTTTGAGC 58.402 50.000 0.00 0.00 42.82 4.26
213 214 2.015736 GCTTTGAGCAAGGAGATCGA 57.984 50.000 0.00 0.00 41.89 3.59
214 215 2.350522 GCTTTGAGCAAGGAGATCGAA 58.649 47.619 0.00 0.00 41.89 3.71
215 216 2.744202 GCTTTGAGCAAGGAGATCGAAA 59.256 45.455 0.00 0.00 41.89 3.46
216 217 3.189287 GCTTTGAGCAAGGAGATCGAAAA 59.811 43.478 0.00 0.00 41.89 2.29
217 218 4.320494 GCTTTGAGCAAGGAGATCGAAAAA 60.320 41.667 0.00 0.00 41.89 1.94
218 219 4.749245 TTGAGCAAGGAGATCGAAAAAC 57.251 40.909 0.00 0.00 34.70 2.43
219 220 2.736721 TGAGCAAGGAGATCGAAAAACG 59.263 45.455 0.00 0.00 44.09 3.60
220 221 1.464997 AGCAAGGAGATCGAAAAACGC 59.535 47.619 0.00 0.00 42.26 4.84
221 222 1.196808 GCAAGGAGATCGAAAAACGCA 59.803 47.619 0.00 0.00 42.26 5.24
222 223 2.726066 GCAAGGAGATCGAAAAACGCAG 60.726 50.000 0.00 0.00 42.26 5.18
223 224 1.079503 AGGAGATCGAAAAACGCAGC 58.920 50.000 0.00 0.00 42.26 5.25
224 225 0.796312 GGAGATCGAAAAACGCAGCA 59.204 50.000 0.00 0.00 42.26 4.41
225 226 1.196808 GGAGATCGAAAAACGCAGCAA 59.803 47.619 0.00 0.00 42.26 3.91
226 227 2.350388 GGAGATCGAAAAACGCAGCAAA 60.350 45.455 0.00 0.00 42.26 3.68
227 228 3.296628 GAGATCGAAAAACGCAGCAAAA 58.703 40.909 0.00 0.00 42.26 2.44
228 229 3.900941 AGATCGAAAAACGCAGCAAAAT 58.099 36.364 0.00 0.00 42.26 1.82
229 230 3.670055 AGATCGAAAAACGCAGCAAAATG 59.330 39.130 0.00 0.00 42.26 2.32
230 231 3.071786 TCGAAAAACGCAGCAAAATGA 57.928 38.095 0.00 0.00 42.26 2.57
231 232 3.042189 TCGAAAAACGCAGCAAAATGAG 58.958 40.909 0.00 0.00 42.26 2.90
232 233 2.408865 CGAAAAACGCAGCAAAATGAGC 60.409 45.455 0.00 0.00 34.51 4.26
233 234 2.514205 AAAACGCAGCAAAATGAGCT 57.486 40.000 0.00 0.00 44.62 4.09
234 235 3.641437 AAAACGCAGCAAAATGAGCTA 57.359 38.095 0.00 0.00 41.14 3.32
235 236 2.907910 AACGCAGCAAAATGAGCTAG 57.092 45.000 0.00 0.00 41.14 3.42
236 237 2.099141 ACGCAGCAAAATGAGCTAGA 57.901 45.000 0.00 0.00 41.14 2.43
237 238 2.426522 ACGCAGCAAAATGAGCTAGAA 58.573 42.857 0.00 0.00 41.14 2.10
238 239 2.160417 ACGCAGCAAAATGAGCTAGAAC 59.840 45.455 0.00 0.00 41.14 3.01
239 240 2.417933 CGCAGCAAAATGAGCTAGAACT 59.582 45.455 0.00 0.00 41.14 3.01
240 241 3.484886 CGCAGCAAAATGAGCTAGAACTC 60.485 47.826 0.00 0.00 41.14 3.01
241 242 3.484886 GCAGCAAAATGAGCTAGAACTCG 60.485 47.826 0.00 0.00 41.14 4.18
242 243 3.063180 CAGCAAAATGAGCTAGAACTCGG 59.937 47.826 0.00 0.00 41.14 4.63
243 244 2.352960 GCAAAATGAGCTAGAACTCGGG 59.647 50.000 0.00 0.00 39.68 5.14
244 245 3.600388 CAAAATGAGCTAGAACTCGGGT 58.400 45.455 0.00 0.00 39.68 5.28
245 246 3.983044 AAATGAGCTAGAACTCGGGTT 57.017 42.857 0.00 0.00 39.68 4.11
246 247 3.983044 AATGAGCTAGAACTCGGGTTT 57.017 42.857 0.15 0.00 39.68 3.27
247 248 2.743636 TGAGCTAGAACTCGGGTTTG 57.256 50.000 0.15 0.00 39.68 2.93
248 249 2.244695 TGAGCTAGAACTCGGGTTTGA 58.755 47.619 0.15 0.00 39.68 2.69
249 250 2.231478 TGAGCTAGAACTCGGGTTTGAG 59.769 50.000 0.15 3.87 39.68 3.02
250 251 1.066787 AGCTAGAACTCGGGTTTGAGC 60.067 52.381 21.51 21.51 40.57 4.26
251 252 1.066787 GCTAGAACTCGGGTTTGAGCT 60.067 52.381 21.67 9.55 39.68 4.09
252 253 2.611518 CTAGAACTCGGGTTTGAGCTG 58.388 52.381 0.15 0.00 39.68 4.24
253 254 0.035458 AGAACTCGGGTTTGAGCTGG 59.965 55.000 0.15 0.00 39.68 4.85
254 255 0.250338 GAACTCGGGTTTGAGCTGGT 60.250 55.000 0.15 0.00 39.68 4.00
255 256 0.182775 AACTCGGGTTTGAGCTGGTT 59.817 50.000 0.00 0.00 39.68 3.67
256 257 0.535102 ACTCGGGTTTGAGCTGGTTG 60.535 55.000 0.00 0.00 39.68 3.77
257 258 1.228124 TCGGGTTTGAGCTGGTTGG 60.228 57.895 0.00 0.00 0.00 3.77
258 259 1.528309 CGGGTTTGAGCTGGTTGGT 60.528 57.895 0.00 0.00 0.00 3.67
259 260 1.795170 CGGGTTTGAGCTGGTTGGTG 61.795 60.000 0.00 0.00 0.00 4.17
260 261 0.467290 GGGTTTGAGCTGGTTGGTGA 60.467 55.000 0.00 0.00 0.00 4.02
261 262 1.620822 GGTTTGAGCTGGTTGGTGAT 58.379 50.000 0.00 0.00 0.00 3.06
262 263 1.963515 GGTTTGAGCTGGTTGGTGATT 59.036 47.619 0.00 0.00 0.00 2.57
263 264 2.365293 GGTTTGAGCTGGTTGGTGATTT 59.635 45.455 0.00 0.00 0.00 2.17
264 265 3.181466 GGTTTGAGCTGGTTGGTGATTTT 60.181 43.478 0.00 0.00 0.00 1.82
265 266 4.441792 GTTTGAGCTGGTTGGTGATTTTT 58.558 39.130 0.00 0.00 0.00 1.94
285 286 4.519906 TTTTGGGAGGAAGAAGAAGTGT 57.480 40.909 0.00 0.00 0.00 3.55
286 287 3.492102 TTGGGAGGAAGAAGAAGTGTG 57.508 47.619 0.00 0.00 0.00 3.82
290 291 2.551071 GGAGGAAGAAGAAGTGTGTGGG 60.551 54.545 0.00 0.00 0.00 4.61
311 312 0.659957 GCATGCACTCGGAGAATTCC 59.340 55.000 14.21 0.00 40.33 3.01
329 330 1.827344 TCCGAGAGAATGACTGCATGT 59.173 47.619 0.00 0.00 34.26 3.21
332 333 4.081697 TCCGAGAGAATGACTGCATGTTTA 60.082 41.667 0.00 0.00 34.26 2.01
388 390 1.253034 CGATCGCGCTTGTTAGAGAAC 59.747 52.381 5.56 0.00 36.00 3.01
398 400 1.272490 TGTTAGAGAACTCCGCCACAG 59.728 52.381 0.00 0.00 36.45 3.66
430 432 2.149578 CCCACAGAGTTGAAGCTCAAG 58.850 52.381 0.00 0.00 37.00 3.02
440 442 4.283230 TTGAAGCTCAAGCCCTTAGGGG 62.283 54.545 20.27 5.30 42.63 4.79
478 480 2.088104 AGGGCATTGGAGATCGTCTA 57.912 50.000 0.00 0.00 0.00 2.59
488 490 6.978674 TTGGAGATCGTCTAAATATGGAGT 57.021 37.500 0.00 0.00 0.00 3.85
491 493 7.002276 TGGAGATCGTCTAAATATGGAGTGTA 58.998 38.462 0.00 0.00 0.00 2.90
494 496 7.316640 AGATCGTCTAAATATGGAGTGTATGC 58.683 38.462 0.00 0.00 0.00 3.14
497 499 4.929808 GTCTAAATATGGAGTGTATGCCGG 59.070 45.833 0.00 0.00 0.00 6.13
544 546 3.001406 CGTCGGTTCCCCCTCCTT 61.001 66.667 0.00 0.00 0.00 3.36
578 580 1.017387 CTAATGGCGTGGCTTCTTCC 58.983 55.000 0.00 0.00 0.00 3.46
584 586 0.603975 GCGTGGCTTCTTCCTCAGTT 60.604 55.000 0.00 0.00 0.00 3.16
617 619 2.841988 ATCGCCTCCTCCAGCCTC 60.842 66.667 0.00 0.00 0.00 4.70
623 625 4.722535 TCCTCCAGCCTCGCCCTT 62.723 66.667 0.00 0.00 0.00 3.95
654 656 2.285827 CGAGAGCGTTCCTTCATCTT 57.714 50.000 0.00 0.00 0.00 2.40
663 665 3.074412 GTTCCTTCATCTTCTTTGCCGA 58.926 45.455 0.00 0.00 0.00 5.54
772 778 3.768008 CCTATCGGGAGGCTCCTAA 57.232 57.895 31.39 20.28 36.57 2.69
773 779 1.551452 CCTATCGGGAGGCTCCTAAG 58.449 60.000 31.39 22.16 36.57 2.18
790 796 6.238676 GCTCCTAAGTTTTCGGAGAACTTTTT 60.239 38.462 25.60 9.79 45.67 1.94
839 856 5.144692 TCATTTGAATCGAAAATGCCCAA 57.855 34.783 13.74 0.00 42.29 4.12
840 857 5.732633 TCATTTGAATCGAAAATGCCCAAT 58.267 33.333 13.74 0.00 42.29 3.16
841 858 5.581479 TCATTTGAATCGAAAATGCCCAATG 59.419 36.000 13.74 4.84 42.29 2.82
842 859 4.533919 TTGAATCGAAAATGCCCAATGT 57.466 36.364 0.00 0.00 0.00 2.71
843 860 3.847542 TGAATCGAAAATGCCCAATGTG 58.152 40.909 0.00 0.00 0.00 3.21
848 865 2.687370 GAAAATGCCCAATGTGTCACC 58.313 47.619 0.00 0.00 0.00 4.02
849 866 1.714541 AAATGCCCAATGTGTCACCA 58.285 45.000 0.00 0.00 0.00 4.17
850 867 0.968405 AATGCCCAATGTGTCACCAC 59.032 50.000 0.00 0.00 42.19 4.16
851 868 0.112995 ATGCCCAATGTGTCACCACT 59.887 50.000 0.00 0.00 42.34 4.00
852 869 0.106268 TGCCCAATGTGTCACCACTT 60.106 50.000 0.00 0.00 42.34 3.16
853 870 0.598065 GCCCAATGTGTCACCACTTC 59.402 55.000 0.00 0.00 42.34 3.01
854 871 1.247567 CCCAATGTGTCACCACTTCC 58.752 55.000 0.00 0.00 42.34 3.46
855 872 1.247567 CCAATGTGTCACCACTTCCC 58.752 55.000 0.00 0.00 42.34 3.97
856 873 1.478471 CCAATGTGTCACCACTTCCCA 60.478 52.381 0.00 0.00 42.34 4.37
857 874 1.608590 CAATGTGTCACCACTTCCCAC 59.391 52.381 0.00 0.00 42.34 4.61
858 875 0.250295 ATGTGTCACCACTTCCCACG 60.250 55.000 0.00 0.00 42.34 4.94
859 876 1.331399 TGTGTCACCACTTCCCACGA 61.331 55.000 0.00 0.00 42.34 4.35
860 877 0.034896 GTGTCACCACTTCCCACGAT 59.965 55.000 0.00 0.00 38.61 3.73
863 880 1.549170 GTCACCACTTCCCACGATACT 59.451 52.381 0.00 0.00 0.00 2.12
869 886 3.567164 CCACTTCCCACGATACTATACGT 59.433 47.826 0.00 0.00 43.50 3.57
890 907 3.861689 GTCTATACGGGTAGCACACAAAC 59.138 47.826 0.00 0.00 0.00 2.93
891 908 2.103537 ATACGGGTAGCACACAAACC 57.896 50.000 0.00 0.00 0.00 3.27
899 916 2.906897 CACACAAACCTGCCGGCT 60.907 61.111 29.70 3.84 0.00 5.52
902 919 4.660938 ACAAACCTGCCGGCTCCC 62.661 66.667 29.70 0.00 0.00 4.30
967 985 1.498176 GGGAGCAGTAGGTGGGGTTT 61.498 60.000 0.00 0.00 0.00 3.27
972 990 0.037734 CAGTAGGTGGGGTTTGGGTC 59.962 60.000 0.00 0.00 0.00 4.46
1056 1074 4.806339 CTCCTCCCCGCCTCCCTT 62.806 72.222 0.00 0.00 0.00 3.95
1377 1395 3.764466 CCGCTGACGCCCTCTCTT 61.764 66.667 0.00 0.00 38.22 2.85
1382 1400 0.682855 CTGACGCCCTCTCTTCTCCT 60.683 60.000 0.00 0.00 0.00 3.69
1383 1401 0.681564 TGACGCCCTCTCTTCTCCTC 60.682 60.000 0.00 0.00 0.00 3.71
1384 1402 0.681564 GACGCCCTCTCTTCTCCTCA 60.682 60.000 0.00 0.00 0.00 3.86
1539 1575 3.851845 TTGACTGGTCCGCCGTTCG 62.852 63.158 0.00 0.00 37.67 3.95
1595 1633 2.352032 CGCCTTCTTCGAGGACCCT 61.352 63.158 0.00 0.00 39.25 4.34
1633 1671 2.348362 TGCTGATTGCTCGTACGAATTG 59.652 45.455 20.00 9.03 43.37 2.32
1634 1672 2.348666 GCTGATTGCTCGTACGAATTGT 59.651 45.455 20.00 6.03 38.95 2.71
1692 1731 0.316204 ATTTGCTTGTGCTGCCTGTC 59.684 50.000 0.00 0.00 40.48 3.51
1753 1792 4.817517 AGTACATTTCGTTGATCGTTCCT 58.182 39.130 0.00 0.00 40.80 3.36
1777 1816 1.444553 CAACGAGGAGTGTCGGCTC 60.445 63.158 0.00 0.00 44.53 4.70
1899 1938 2.420022 CCAGTTGCCTGTATGTAACTGC 59.580 50.000 14.08 0.00 45.23 4.40
1952 1991 9.982651 ATACGCTATGTTAATCACTGTATTTCT 57.017 29.630 0.00 0.00 0.00 2.52
1953 1992 8.718102 ACGCTATGTTAATCACTGTATTTCTT 57.282 30.769 0.00 0.00 0.00 2.52
2112 2154 4.155280 GCAAGCGGAACTAACTTGGATTTA 59.845 41.667 0.00 0.00 40.87 1.40
2234 2277 1.365028 TGGATACCTATAGCCCCCTCC 59.635 57.143 0.00 0.00 35.86 4.30
2447 2505 0.600057 GAAAGGCCCTGACAAAGCTG 59.400 55.000 0.00 0.00 0.00 4.24
2469 2527 5.260424 TGCATAAATTTTCCCAGAGCTACA 58.740 37.500 0.00 0.00 0.00 2.74
2504 2562 7.066766 GCTTCTGAATATTCATCACTTGTCCTT 59.933 37.037 18.26 0.00 36.46 3.36
2540 2598 9.399797 TCCCATGTGATATTCATAATTATGCTC 57.600 33.333 18.89 12.93 33.76 4.26
2700 2758 4.508461 CAATGGTGCAGAATTCAGTCAA 57.492 40.909 8.44 0.00 0.00 3.18
2728 2786 6.557291 ACCTATCTACTACACGTGCTATTC 57.443 41.667 17.22 0.00 0.00 1.75
2772 2833 3.463533 TGCATCGTTTTGTATTGACCG 57.536 42.857 0.00 0.00 0.00 4.79
2786 2847 6.455647 TGTATTGACCGAGGCTGATATTTAG 58.544 40.000 0.00 0.00 0.00 1.85
3194 3259 0.318441 TTGAAGCTGAGGTCCGTCAG 59.682 55.000 11.61 11.61 45.91 3.51
3409 3490 2.420129 GCCACGGTACATCTCCTGAAAT 60.420 50.000 0.00 0.00 0.00 2.17
3413 3494 3.711704 ACGGTACATCTCCTGAAATCCAT 59.288 43.478 0.00 0.00 0.00 3.41
3414 3495 4.202264 ACGGTACATCTCCTGAAATCCATC 60.202 45.833 0.00 0.00 0.00 3.51
3417 3498 6.302269 GGTACATCTCCTGAAATCCATCATT 58.698 40.000 0.00 0.00 0.00 2.57
3418 3499 6.774656 GGTACATCTCCTGAAATCCATCATTT 59.225 38.462 0.00 0.00 37.41 2.32
3419 3500 7.286316 GGTACATCTCCTGAAATCCATCATTTT 59.714 37.037 0.00 0.00 34.60 1.82
3477 3565 4.235079 TGCTGTATATGCTTTTCCTGGT 57.765 40.909 0.00 0.00 0.00 4.00
3498 3586 4.395231 GGTTTACTGCAGAGGAAATGGTAC 59.605 45.833 23.35 5.96 34.38 3.34
3501 3589 0.251916 TGCAGAGGAAATGGTACCGG 59.748 55.000 7.57 0.00 0.00 5.28
3543 3631 3.322828 TCCACTTGGTAGTACTGTTGACC 59.677 47.826 5.39 5.57 36.34 4.02
3739 3827 7.497925 AGGAAACTCTTTACAAACATCAGAC 57.502 36.000 0.00 0.00 32.90 3.51
3741 3829 7.775561 AGGAAACTCTTTACAAACATCAGACTT 59.224 33.333 0.00 0.00 32.90 3.01
3791 3893 7.229581 GGAAAATCCCACGATACTATCTAGT 57.770 40.000 0.00 0.00 40.24 2.57
3792 3894 8.345724 GGAAAATCCCACGATACTATCTAGTA 57.654 38.462 0.00 0.00 42.43 1.82
3840 3951 4.996788 AAATCTGGATGTTCATTCTGCC 57.003 40.909 0.00 0.00 0.00 4.85
3847 3958 4.473196 TGGATGTTCATTCTGCCCTACTTA 59.527 41.667 0.00 0.00 0.00 2.24
3848 3959 4.816925 GGATGTTCATTCTGCCCTACTTAC 59.183 45.833 0.00 0.00 0.00 2.34
3855 3966 1.486310 TCTGCCCTACTTACTGCATGG 59.514 52.381 0.00 0.00 32.53 3.66
3926 4037 2.088104 TCCCGATGGCAGAAGTATCT 57.912 50.000 0.00 0.00 35.88 1.98
4054 4165 7.110155 TGGAAAATTTACTCATAGACCCTGTC 58.890 38.462 0.00 0.00 0.00 3.51
4291 4442 8.255111 TGCTCCTTCTGATAAATTCTCTGATA 57.745 34.615 0.00 0.00 0.00 2.15
4307 4458 9.635520 ATTCTCTGATATTTTTGCTGTCTTTTG 57.364 29.630 0.00 0.00 0.00 2.44
4308 4459 8.169977 TCTCTGATATTTTTGCTGTCTTTTGT 57.830 30.769 0.00 0.00 0.00 2.83
4322 4473 8.602328 TGCTGTCTTTTGTTTTTATCACAAATG 58.398 29.630 0.00 2.84 42.34 2.32
4418 4573 9.667107 TTAATCAAAACGACCAGAGAAGATTAT 57.333 29.630 0.00 0.00 0.00 1.28
4419 4574 6.968131 TCAAAACGACCAGAGAAGATTATG 57.032 37.500 0.00 0.00 0.00 1.90
4440 4595 5.132897 TGGTGGTTTCTGTGCAAAATATC 57.867 39.130 0.00 0.00 0.00 1.63
4463 4618 3.108144 CAATTCGCCTGGCTAAATTTCG 58.892 45.455 17.92 7.92 0.00 3.46
4540 4947 0.037605 CGCCGTAGAGGAACCAGTTT 60.038 55.000 0.00 0.00 45.00 2.66
4571 4978 1.758783 CAAGCAGCGAAGGTCAAAAC 58.241 50.000 0.00 0.00 33.74 2.43
4716 5123 4.704103 ACTGCCTCCGCCTCCTGA 62.704 66.667 0.00 0.00 0.00 3.86
4770 5177 0.622665 CCTGGCATTCCTCCTCAAGT 59.377 55.000 0.00 0.00 0.00 3.16
4793 5200 2.266055 CTCCACTCCAACCCGCTC 59.734 66.667 0.00 0.00 0.00 5.03
5039 5446 2.507992 CTCCTCAAGTCCTGCGCG 60.508 66.667 0.00 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.948886 TGATATAGGCTCTAGGAACTTGTAGG 59.051 42.308 0.00 0.00 41.75 3.18
1 2 8.588290 ATGATATAGGCTCTAGGAACTTGTAG 57.412 38.462 0.00 0.00 41.75 2.74
2 3 9.463902 GTATGATATAGGCTCTAGGAACTTGTA 57.536 37.037 0.00 0.00 41.75 2.41
3 4 7.950684 TGTATGATATAGGCTCTAGGAACTTGT 59.049 37.037 0.00 0.00 41.75 3.16
4 5 8.354711 TGTATGATATAGGCTCTAGGAACTTG 57.645 38.462 0.00 0.00 41.75 3.16
5 6 9.196139 GATGTATGATATAGGCTCTAGGAACTT 57.804 37.037 0.00 0.00 41.75 2.66
6 7 8.340002 TGATGTATGATATAGGCTCTAGGAACT 58.660 37.037 0.00 0.00 46.37 3.01
7 8 8.526667 TGATGTATGATATAGGCTCTAGGAAC 57.473 38.462 0.00 0.00 0.00 3.62
8 9 9.547279 TTTGATGTATGATATAGGCTCTAGGAA 57.453 33.333 0.00 0.00 0.00 3.36
9 10 9.547279 TTTTGATGTATGATATAGGCTCTAGGA 57.453 33.333 0.00 0.00 0.00 2.94
10 11 9.593134 GTTTTGATGTATGATATAGGCTCTAGG 57.407 37.037 0.00 0.00 0.00 3.02
38 39 9.369904 GCATGTCAAATTTATATGGTCAAAAGT 57.630 29.630 0.00 0.00 0.00 2.66
39 40 9.368674 TGCATGTCAAATTTATATGGTCAAAAG 57.631 29.630 0.00 0.00 0.00 2.27
40 41 9.716531 TTGCATGTCAAATTTATATGGTCAAAA 57.283 25.926 0.00 0.00 0.00 2.44
41 42 9.368674 CTTGCATGTCAAATTTATATGGTCAAA 57.631 29.630 0.00 0.00 33.65 2.69
42 43 7.492020 GCTTGCATGTCAAATTTATATGGTCAA 59.508 33.333 1.14 0.00 33.65 3.18
43 44 6.979817 GCTTGCATGTCAAATTTATATGGTCA 59.020 34.615 1.14 0.00 33.65 4.02
44 45 7.205297 AGCTTGCATGTCAAATTTATATGGTC 58.795 34.615 1.14 0.00 33.65 4.02
45 46 7.116075 AGCTTGCATGTCAAATTTATATGGT 57.884 32.000 1.14 0.00 33.65 3.55
46 47 7.204604 TGAGCTTGCATGTCAAATTTATATGG 58.795 34.615 1.14 0.00 33.65 2.74
47 48 8.637281 TTGAGCTTGCATGTCAAATTTATATG 57.363 30.769 12.10 0.00 33.65 1.78
48 49 8.689061 TCTTGAGCTTGCATGTCAAATTTATAT 58.311 29.630 14.10 0.00 33.65 0.86
49 50 8.054152 TCTTGAGCTTGCATGTCAAATTTATA 57.946 30.769 14.10 0.00 33.65 0.98
50 51 6.927416 TCTTGAGCTTGCATGTCAAATTTAT 58.073 32.000 14.10 0.00 33.65 1.40
51 52 6.330004 TCTTGAGCTTGCATGTCAAATTTA 57.670 33.333 14.10 3.89 33.65 1.40
52 53 5.204409 TCTTGAGCTTGCATGTCAAATTT 57.796 34.783 14.10 0.00 33.65 1.82
53 54 4.859304 TCTTGAGCTTGCATGTCAAATT 57.141 36.364 14.10 0.00 33.65 1.82
54 55 4.038282 TGTTCTTGAGCTTGCATGTCAAAT 59.962 37.500 14.10 0.00 33.65 2.32
55 56 3.380954 TGTTCTTGAGCTTGCATGTCAAA 59.619 39.130 14.10 7.05 33.65 2.69
56 57 2.950975 TGTTCTTGAGCTTGCATGTCAA 59.049 40.909 13.15 13.15 0.00 3.18
57 58 2.551032 CTGTTCTTGAGCTTGCATGTCA 59.449 45.455 1.14 1.82 0.00 3.58
58 59 2.095364 CCTGTTCTTGAGCTTGCATGTC 60.095 50.000 1.14 0.00 0.00 3.06
59 60 1.884579 CCTGTTCTTGAGCTTGCATGT 59.115 47.619 1.14 0.00 0.00 3.21
60 61 1.201647 CCCTGTTCTTGAGCTTGCATG 59.798 52.381 0.00 0.00 0.00 4.06
61 62 1.202976 ACCCTGTTCTTGAGCTTGCAT 60.203 47.619 0.00 0.00 0.00 3.96
62 63 0.183492 ACCCTGTTCTTGAGCTTGCA 59.817 50.000 0.00 0.00 0.00 4.08
63 64 0.877743 GACCCTGTTCTTGAGCTTGC 59.122 55.000 0.00 0.00 0.00 4.01
64 65 2.260844 TGACCCTGTTCTTGAGCTTG 57.739 50.000 0.00 0.00 0.00 4.01
65 66 2.641815 AGATGACCCTGTTCTTGAGCTT 59.358 45.455 0.00 0.00 0.00 3.74
66 67 2.264455 AGATGACCCTGTTCTTGAGCT 58.736 47.619 0.00 0.00 0.00 4.09
67 68 2.777832 AGATGACCCTGTTCTTGAGC 57.222 50.000 0.00 0.00 0.00 4.26
68 69 4.187694 GCTTAGATGACCCTGTTCTTGAG 58.812 47.826 0.00 0.00 0.00 3.02
69 70 3.582647 TGCTTAGATGACCCTGTTCTTGA 59.417 43.478 0.00 0.00 0.00 3.02
70 71 3.937706 CTGCTTAGATGACCCTGTTCTTG 59.062 47.826 0.00 0.00 0.00 3.02
71 72 3.620966 GCTGCTTAGATGACCCTGTTCTT 60.621 47.826 0.00 0.00 0.00 2.52
72 73 2.093235 GCTGCTTAGATGACCCTGTTCT 60.093 50.000 0.00 0.00 0.00 3.01
73 74 2.284190 GCTGCTTAGATGACCCTGTTC 58.716 52.381 0.00 0.00 0.00 3.18
74 75 1.630369 TGCTGCTTAGATGACCCTGTT 59.370 47.619 0.00 0.00 0.00 3.16
75 76 1.279496 TGCTGCTTAGATGACCCTGT 58.721 50.000 0.00 0.00 0.00 4.00
76 77 2.408271 TTGCTGCTTAGATGACCCTG 57.592 50.000 0.00 0.00 0.00 4.45
77 78 3.439857 TTTTGCTGCTTAGATGACCCT 57.560 42.857 0.00 0.00 0.00 4.34
78 79 4.725790 ATTTTTGCTGCTTAGATGACCC 57.274 40.909 0.00 0.00 0.00 4.46
79 80 5.689068 GCATATTTTTGCTGCTTAGATGACC 59.311 40.000 0.00 0.00 39.57 4.02
80 81 6.267817 TGCATATTTTTGCTGCTTAGATGAC 58.732 36.000 0.00 0.00 43.18 3.06
81 82 6.453926 TGCATATTTTTGCTGCTTAGATGA 57.546 33.333 0.00 0.00 43.18 2.92
82 83 7.436970 TCATTGCATATTTTTGCTGCTTAGATG 59.563 33.333 0.00 0.00 43.18 2.90
83 84 7.494211 TCATTGCATATTTTTGCTGCTTAGAT 58.506 30.769 0.00 0.00 43.18 1.98
84 85 6.865411 TCATTGCATATTTTTGCTGCTTAGA 58.135 32.000 0.00 0.00 43.18 2.10
85 86 7.528481 TTCATTGCATATTTTTGCTGCTTAG 57.472 32.000 0.00 0.00 43.18 2.18
86 87 9.597170 TTATTCATTGCATATTTTTGCTGCTTA 57.403 25.926 0.00 0.00 43.18 3.09
87 88 6.995511 ATTCATTGCATATTTTTGCTGCTT 57.004 29.167 0.00 0.00 43.18 3.91
88 89 8.495361 TTTATTCATTGCATATTTTTGCTGCT 57.505 26.923 0.00 0.00 43.18 4.24
89 90 7.375017 GCTTTATTCATTGCATATTTTTGCTGC 59.625 33.333 0.00 0.00 43.18 5.25
90 91 8.391859 TGCTTTATTCATTGCATATTTTTGCTG 58.608 29.630 0.00 0.00 43.18 4.41
91 92 8.392612 GTGCTTTATTCATTGCATATTTTTGCT 58.607 29.630 0.00 0.00 43.18 3.91
92 93 8.392612 AGTGCTTTATTCATTGCATATTTTTGC 58.607 29.630 0.00 0.00 43.07 3.68
97 98 9.956720 GTTCTAGTGCTTTATTCATTGCATATT 57.043 29.630 0.00 0.00 37.76 1.28
98 99 9.123902 TGTTCTAGTGCTTTATTCATTGCATAT 57.876 29.630 0.00 0.00 37.76 1.78
99 100 8.504812 TGTTCTAGTGCTTTATTCATTGCATA 57.495 30.769 0.00 0.00 37.76 3.14
100 101 7.395190 TGTTCTAGTGCTTTATTCATTGCAT 57.605 32.000 0.00 0.00 37.76 3.96
101 102 6.816134 TGTTCTAGTGCTTTATTCATTGCA 57.184 33.333 0.00 0.00 0.00 4.08
102 103 8.519492 TTTTGTTCTAGTGCTTTATTCATTGC 57.481 30.769 0.00 0.00 0.00 3.56
110 111 9.959749 CCAATTAGTTTTTGTTCTAGTGCTTTA 57.040 29.630 0.00 0.00 0.00 1.85
111 112 8.691797 TCCAATTAGTTTTTGTTCTAGTGCTTT 58.308 29.630 0.00 0.00 0.00 3.51
112 113 8.135529 GTCCAATTAGTTTTTGTTCTAGTGCTT 58.864 33.333 0.00 0.00 0.00 3.91
113 114 7.255486 GGTCCAATTAGTTTTTGTTCTAGTGCT 60.255 37.037 0.00 0.00 0.00 4.40
114 115 6.861572 GGTCCAATTAGTTTTTGTTCTAGTGC 59.138 38.462 0.00 0.00 0.00 4.40
115 116 7.936584 TGGTCCAATTAGTTTTTGTTCTAGTG 58.063 34.615 0.00 0.00 0.00 2.74
116 117 8.706322 ATGGTCCAATTAGTTTTTGTTCTAGT 57.294 30.769 0.00 0.00 0.00 2.57
117 118 9.410556 CAATGGTCCAATTAGTTTTTGTTCTAG 57.589 33.333 0.00 0.00 0.00 2.43
118 119 8.364142 CCAATGGTCCAATTAGTTTTTGTTCTA 58.636 33.333 0.00 0.00 0.00 2.10
119 120 7.070571 TCCAATGGTCCAATTAGTTTTTGTTCT 59.929 33.333 0.00 0.00 0.00 3.01
120 121 7.213678 TCCAATGGTCCAATTAGTTTTTGTTC 58.786 34.615 0.00 0.00 0.00 3.18
121 122 7.130681 TCCAATGGTCCAATTAGTTTTTGTT 57.869 32.000 0.00 0.00 0.00 2.83
122 123 6.239572 CCTCCAATGGTCCAATTAGTTTTTGT 60.240 38.462 0.00 0.00 0.00 2.83
123 124 6.014669 TCCTCCAATGGTCCAATTAGTTTTTG 60.015 38.462 0.00 0.00 0.00 2.44
124 125 6.081356 TCCTCCAATGGTCCAATTAGTTTTT 58.919 36.000 0.00 0.00 0.00 1.94
125 126 5.650283 TCCTCCAATGGTCCAATTAGTTTT 58.350 37.500 0.00 0.00 0.00 2.43
126 127 5.222337 ACTCCTCCAATGGTCCAATTAGTTT 60.222 40.000 0.00 0.00 0.00 2.66
127 128 4.292306 ACTCCTCCAATGGTCCAATTAGTT 59.708 41.667 0.00 0.00 0.00 2.24
128 129 3.852578 ACTCCTCCAATGGTCCAATTAGT 59.147 43.478 0.00 0.00 0.00 2.24
129 130 4.080356 TGACTCCTCCAATGGTCCAATTAG 60.080 45.833 0.00 0.00 0.00 1.73
130 131 3.849574 TGACTCCTCCAATGGTCCAATTA 59.150 43.478 0.00 0.00 0.00 1.40
131 132 2.649312 TGACTCCTCCAATGGTCCAATT 59.351 45.455 0.00 0.00 0.00 2.32
132 133 2.025887 GTGACTCCTCCAATGGTCCAAT 60.026 50.000 0.00 0.00 0.00 3.16
133 134 1.351017 GTGACTCCTCCAATGGTCCAA 59.649 52.381 0.00 0.00 0.00 3.53
134 135 0.984230 GTGACTCCTCCAATGGTCCA 59.016 55.000 0.00 0.00 0.00 4.02
135 136 0.984230 TGTGACTCCTCCAATGGTCC 59.016 55.000 0.00 0.00 0.00 4.46
136 137 3.432326 GGTATGTGACTCCTCCAATGGTC 60.432 52.174 0.00 0.00 0.00 4.02
137 138 2.505819 GGTATGTGACTCCTCCAATGGT 59.494 50.000 0.00 0.00 0.00 3.55
138 139 2.505407 TGGTATGTGACTCCTCCAATGG 59.495 50.000 0.00 0.00 0.00 3.16
139 140 3.912496 TGGTATGTGACTCCTCCAATG 57.088 47.619 0.00 0.00 0.00 2.82
140 141 3.200825 CCTTGGTATGTGACTCCTCCAAT 59.799 47.826 0.00 0.00 35.01 3.16
141 142 2.571653 CCTTGGTATGTGACTCCTCCAA 59.428 50.000 0.00 0.00 34.47 3.53
142 143 2.187958 CCTTGGTATGTGACTCCTCCA 58.812 52.381 0.00 0.00 0.00 3.86
143 144 2.467880 TCCTTGGTATGTGACTCCTCC 58.532 52.381 0.00 0.00 0.00 4.30
144 145 3.260884 TGTTCCTTGGTATGTGACTCCTC 59.739 47.826 0.00 0.00 0.00 3.71
145 146 3.248024 TGTTCCTTGGTATGTGACTCCT 58.752 45.455 0.00 0.00 0.00 3.69
146 147 3.695830 TGTTCCTTGGTATGTGACTCC 57.304 47.619 0.00 0.00 0.00 3.85
147 148 4.636206 GGATTGTTCCTTGGTATGTGACTC 59.364 45.833 0.00 0.00 39.14 3.36
148 149 4.567747 GGGATTGTTCCTTGGTATGTGACT 60.568 45.833 0.00 0.00 42.20 3.41
149 150 3.694566 GGGATTGTTCCTTGGTATGTGAC 59.305 47.826 0.00 0.00 42.20 3.67
150 151 3.308832 GGGGATTGTTCCTTGGTATGTGA 60.309 47.826 0.00 0.00 42.20 3.58
151 152 3.023832 GGGGATTGTTCCTTGGTATGTG 58.976 50.000 0.00 0.00 42.20 3.21
152 153 2.024369 GGGGGATTGTTCCTTGGTATGT 60.024 50.000 0.00 0.00 42.20 2.29
153 154 2.024464 TGGGGGATTGTTCCTTGGTATG 60.024 50.000 0.00 0.00 42.20 2.39
154 155 2.293246 TGGGGGATTGTTCCTTGGTAT 58.707 47.619 0.00 0.00 42.20 2.73
155 156 1.761711 TGGGGGATTGTTCCTTGGTA 58.238 50.000 0.00 0.00 42.20 3.25
156 157 0.863956 TTGGGGGATTGTTCCTTGGT 59.136 50.000 0.00 0.00 42.20 3.67
157 158 1.901833 CTTTGGGGGATTGTTCCTTGG 59.098 52.381 0.00 0.00 42.20 3.61
158 159 1.276138 GCTTTGGGGGATTGTTCCTTG 59.724 52.381 0.00 0.00 42.20 3.61
159 160 1.132881 TGCTTTGGGGGATTGTTCCTT 60.133 47.619 0.00 0.00 42.20 3.36
160 161 0.486879 TGCTTTGGGGGATTGTTCCT 59.513 50.000 0.00 0.00 42.20 3.36
161 162 0.897621 CTGCTTTGGGGGATTGTTCC 59.102 55.000 0.00 0.00 41.77 3.62
162 163 1.632589 ACTGCTTTGGGGGATTGTTC 58.367 50.000 0.00 0.00 0.00 3.18
163 164 2.101640 AACTGCTTTGGGGGATTGTT 57.898 45.000 0.00 0.00 0.00 2.83
164 165 2.101640 AAACTGCTTTGGGGGATTGT 57.898 45.000 0.00 0.00 0.00 2.71
165 166 2.769893 CAAAACTGCTTTGGGGGATTG 58.230 47.619 0.00 0.00 40.74 2.67
166 167 4.202746 TCACAAAACTGCTTTGGGGGATT 61.203 43.478 5.99 0.00 46.76 3.01
167 168 2.692461 TCACAAAACTGCTTTGGGGGAT 60.692 45.455 5.99 0.00 46.76 3.85
168 169 1.342474 TCACAAAACTGCTTTGGGGGA 60.342 47.619 5.99 0.00 46.76 4.81
169 170 1.069049 CTCACAAAACTGCTTTGGGGG 59.931 52.381 5.99 0.00 46.76 5.40
170 171 2.031120 TCTCACAAAACTGCTTTGGGG 58.969 47.619 5.99 0.00 46.76 4.96
173 174 8.990030 AAAGCACCTCTCACAAAACTGCTTTG 62.990 42.308 12.58 2.18 46.47 2.77
174 175 2.099756 GCACCTCTCACAAAACTGCTTT 59.900 45.455 0.00 0.00 0.00 3.51
175 176 1.678101 GCACCTCTCACAAAACTGCTT 59.322 47.619 0.00 0.00 0.00 3.91
176 177 1.133976 AGCACCTCTCACAAAACTGCT 60.134 47.619 0.00 0.00 0.00 4.24
177 178 1.312815 AGCACCTCTCACAAAACTGC 58.687 50.000 0.00 0.00 0.00 4.40
178 179 3.378112 TCAAAGCACCTCTCACAAAACTG 59.622 43.478 0.00 0.00 0.00 3.16
179 180 3.620488 TCAAAGCACCTCTCACAAAACT 58.380 40.909 0.00 0.00 0.00 2.66
180 181 3.793465 GCTCAAAGCACCTCTCACAAAAC 60.793 47.826 0.00 0.00 41.89 2.43
181 182 2.358898 GCTCAAAGCACCTCTCACAAAA 59.641 45.455 0.00 0.00 41.89 2.44
182 183 1.949525 GCTCAAAGCACCTCTCACAAA 59.050 47.619 0.00 0.00 41.89 2.83
183 184 1.597742 GCTCAAAGCACCTCTCACAA 58.402 50.000 0.00 0.00 41.89 3.33
184 185 3.312404 GCTCAAAGCACCTCTCACA 57.688 52.632 0.00 0.00 41.89 3.58
194 195 2.015736 TCGATCTCCTTGCTCAAAGC 57.984 50.000 0.00 0.00 42.82 3.51
195 196 5.149977 GTTTTTCGATCTCCTTGCTCAAAG 58.850 41.667 0.00 0.00 35.47 2.77
196 197 4.319477 CGTTTTTCGATCTCCTTGCTCAAA 60.319 41.667 0.00 0.00 42.86 2.69
197 198 3.186409 CGTTTTTCGATCTCCTTGCTCAA 59.814 43.478 0.00 0.00 42.86 3.02
198 199 2.736721 CGTTTTTCGATCTCCTTGCTCA 59.263 45.455 0.00 0.00 42.86 4.26
199 200 2.474691 GCGTTTTTCGATCTCCTTGCTC 60.475 50.000 0.00 0.00 42.86 4.26
200 201 1.464997 GCGTTTTTCGATCTCCTTGCT 59.535 47.619 0.00 0.00 42.86 3.91
201 202 1.196808 TGCGTTTTTCGATCTCCTTGC 59.803 47.619 0.00 0.00 42.86 4.01
202 203 2.726066 GCTGCGTTTTTCGATCTCCTTG 60.726 50.000 0.00 0.00 42.86 3.61
203 204 1.464997 GCTGCGTTTTTCGATCTCCTT 59.535 47.619 0.00 0.00 42.86 3.36
204 205 1.079503 GCTGCGTTTTTCGATCTCCT 58.920 50.000 0.00 0.00 42.86 3.69
205 206 0.796312 TGCTGCGTTTTTCGATCTCC 59.204 50.000 0.00 0.00 42.86 3.71
206 207 2.594529 TTGCTGCGTTTTTCGATCTC 57.405 45.000 0.00 0.00 42.86 2.75
207 208 3.347958 TTTTGCTGCGTTTTTCGATCT 57.652 38.095 0.00 0.00 42.86 2.75
208 209 3.668191 TCATTTTGCTGCGTTTTTCGATC 59.332 39.130 0.00 0.00 42.86 3.69
209 210 3.637432 TCATTTTGCTGCGTTTTTCGAT 58.363 36.364 0.00 0.00 42.86 3.59
210 211 3.042189 CTCATTTTGCTGCGTTTTTCGA 58.958 40.909 0.00 0.00 42.86 3.71
211 212 2.408865 GCTCATTTTGCTGCGTTTTTCG 60.409 45.455 0.00 0.00 43.12 3.46
212 213 2.796593 AGCTCATTTTGCTGCGTTTTTC 59.203 40.909 0.00 0.00 39.56 2.29
213 214 2.825205 AGCTCATTTTGCTGCGTTTTT 58.175 38.095 0.00 0.00 39.56 1.94
214 215 2.514205 AGCTCATTTTGCTGCGTTTT 57.486 40.000 0.00 0.00 39.56 2.43
215 216 2.813754 TCTAGCTCATTTTGCTGCGTTT 59.186 40.909 0.00 0.00 41.32 3.60
216 217 2.426522 TCTAGCTCATTTTGCTGCGTT 58.573 42.857 0.00 0.00 41.32 4.84
217 218 2.099141 TCTAGCTCATTTTGCTGCGT 57.901 45.000 0.00 0.00 41.32 5.24
218 219 2.417933 AGTTCTAGCTCATTTTGCTGCG 59.582 45.455 0.00 0.00 41.32 5.18
219 220 3.484886 CGAGTTCTAGCTCATTTTGCTGC 60.485 47.826 0.00 0.00 41.32 5.25
220 221 3.063180 CCGAGTTCTAGCTCATTTTGCTG 59.937 47.826 0.00 0.00 41.32 4.41
221 222 3.265791 CCGAGTTCTAGCTCATTTTGCT 58.734 45.455 0.00 0.00 43.79 3.91
222 223 2.352960 CCCGAGTTCTAGCTCATTTTGC 59.647 50.000 0.00 0.00 35.33 3.68
223 224 3.600388 ACCCGAGTTCTAGCTCATTTTG 58.400 45.455 0.00 0.00 35.33 2.44
224 225 3.983044 ACCCGAGTTCTAGCTCATTTT 57.017 42.857 0.00 0.00 35.33 1.82
225 226 3.983044 AACCCGAGTTCTAGCTCATTT 57.017 42.857 0.00 0.00 35.33 2.32
226 227 3.260884 TCAAACCCGAGTTCTAGCTCATT 59.739 43.478 0.00 0.00 34.19 2.57
227 228 2.832129 TCAAACCCGAGTTCTAGCTCAT 59.168 45.455 0.00 0.00 34.19 2.90
228 229 2.231478 CTCAAACCCGAGTTCTAGCTCA 59.769 50.000 0.00 0.00 34.19 4.26
229 230 2.882324 CTCAAACCCGAGTTCTAGCTC 58.118 52.381 0.00 0.00 34.19 4.09
230 231 1.066787 GCTCAAACCCGAGTTCTAGCT 60.067 52.381 8.50 0.00 39.13 3.32
231 232 1.066787 AGCTCAAACCCGAGTTCTAGC 60.067 52.381 7.89 7.89 40.98 3.42
232 233 2.611518 CAGCTCAAACCCGAGTTCTAG 58.388 52.381 0.00 0.00 34.19 2.43
233 234 1.275291 CCAGCTCAAACCCGAGTTCTA 59.725 52.381 0.00 0.00 34.19 2.10
234 235 0.035458 CCAGCTCAAACCCGAGTTCT 59.965 55.000 0.00 0.00 34.19 3.01
235 236 0.250338 ACCAGCTCAAACCCGAGTTC 60.250 55.000 0.00 0.00 34.19 3.01
236 237 0.182775 AACCAGCTCAAACCCGAGTT 59.817 50.000 0.00 0.00 38.03 3.01
237 238 0.535102 CAACCAGCTCAAACCCGAGT 60.535 55.000 0.00 0.00 35.33 4.18
238 239 1.237285 CCAACCAGCTCAAACCCGAG 61.237 60.000 0.00 0.00 36.02 4.63
239 240 1.228124 CCAACCAGCTCAAACCCGA 60.228 57.895 0.00 0.00 0.00 5.14
240 241 1.528309 ACCAACCAGCTCAAACCCG 60.528 57.895 0.00 0.00 0.00 5.28
241 242 0.467290 TCACCAACCAGCTCAAACCC 60.467 55.000 0.00 0.00 0.00 4.11
242 243 1.620822 ATCACCAACCAGCTCAAACC 58.379 50.000 0.00 0.00 0.00 3.27
243 244 3.733443 AAATCACCAACCAGCTCAAAC 57.267 42.857 0.00 0.00 0.00 2.93
244 245 4.751767 AAAAATCACCAACCAGCTCAAA 57.248 36.364 0.00 0.00 0.00 2.69
263 264 4.644685 CACACTTCTTCTTCCTCCCAAAAA 59.355 41.667 0.00 0.00 0.00 1.94
264 265 4.207165 CACACTTCTTCTTCCTCCCAAAA 58.793 43.478 0.00 0.00 0.00 2.44
265 266 3.202151 ACACACTTCTTCTTCCTCCCAAA 59.798 43.478 0.00 0.00 0.00 3.28
266 267 2.777692 ACACACTTCTTCTTCCTCCCAA 59.222 45.455 0.00 0.00 0.00 4.12
267 268 2.104792 CACACACTTCTTCTTCCTCCCA 59.895 50.000 0.00 0.00 0.00 4.37
268 269 2.551071 CCACACACTTCTTCTTCCTCCC 60.551 54.545 0.00 0.00 0.00 4.30
269 270 2.551071 CCCACACACTTCTTCTTCCTCC 60.551 54.545 0.00 0.00 0.00 4.30
270 271 2.104963 ACCCACACACTTCTTCTTCCTC 59.895 50.000 0.00 0.00 0.00 3.71
271 272 2.127708 ACCCACACACTTCTTCTTCCT 58.872 47.619 0.00 0.00 0.00 3.36
272 273 2.222027 CACCCACACACTTCTTCTTCC 58.778 52.381 0.00 0.00 0.00 3.46
273 274 1.604278 GCACCCACACACTTCTTCTTC 59.396 52.381 0.00 0.00 0.00 2.87
274 275 1.064758 TGCACCCACACACTTCTTCTT 60.065 47.619 0.00 0.00 0.00 2.52
275 276 0.546122 TGCACCCACACACTTCTTCT 59.454 50.000 0.00 0.00 0.00 2.85
276 277 1.267806 CATGCACCCACACACTTCTTC 59.732 52.381 0.00 0.00 0.00 2.87
277 278 1.321474 CATGCACCCACACACTTCTT 58.679 50.000 0.00 0.00 0.00 2.52
278 279 1.174712 GCATGCACCCACACACTTCT 61.175 55.000 14.21 0.00 0.00 2.85
279 280 1.286880 GCATGCACCCACACACTTC 59.713 57.895 14.21 0.00 0.00 3.01
280 281 1.455402 TGCATGCACCCACACACTT 60.455 52.632 18.46 0.00 0.00 3.16
281 282 2.195411 TGCATGCACCCACACACT 59.805 55.556 18.46 0.00 0.00 3.55
282 283 2.336088 GTGCATGCACCCACACAC 59.664 61.111 35.69 12.07 40.79 3.82
290 291 1.063174 GAATTCTCCGAGTGCATGCAC 59.937 52.381 37.87 37.87 46.50 4.57
311 312 4.867047 AGTAAACATGCAGTCATTCTCTCG 59.133 41.667 0.00 0.00 0.00 4.04
317 318 5.620654 GCACATCAGTAAACATGCAGTCATT 60.621 40.000 0.00 0.00 33.27 2.57
329 330 1.346395 AGTCCGTGGCACATCAGTAAA 59.654 47.619 19.09 0.00 44.52 2.01
332 333 1.004560 CAGTCCGTGGCACATCAGT 60.005 57.895 19.09 0.04 44.52 3.41
382 384 1.867919 CGTCTGTGGCGGAGTTCTCT 61.868 60.000 0.00 0.00 0.00 3.10
398 400 2.135933 CTCTGTGGGAGAAAACACGTC 58.864 52.381 0.00 0.00 44.45 4.34
440 442 0.963355 TTCGGCTTGCATGGGGTAAC 60.963 55.000 1.34 0.00 0.00 2.50
443 445 2.361610 CTTCGGCTTGCATGGGGT 60.362 61.111 1.34 0.00 0.00 4.95
444 446 3.142838 CCTTCGGCTTGCATGGGG 61.143 66.667 1.34 0.00 0.00 4.96
455 457 0.882042 CGATCTCCAATGCCCTTCGG 60.882 60.000 0.00 0.00 0.00 4.30
478 480 3.118038 ACACCGGCATACACTCCATATTT 60.118 43.478 0.00 0.00 0.00 1.40
497 499 1.449070 GGCGGGCAAGGTACTACAC 60.449 63.158 0.00 0.00 38.49 2.90
533 535 2.280552 CGACGTCAAGGAGGGGGAA 61.281 63.158 17.16 0.00 0.00 3.97
544 546 3.507786 CCATTAGTGATTGACGACGTCA 58.492 45.455 26.04 26.04 41.09 4.35
562 564 1.078143 GAGGAAGAAGCCACGCCAT 60.078 57.895 0.00 0.00 0.00 4.40
563 565 2.347490 GAGGAAGAAGCCACGCCA 59.653 61.111 0.00 0.00 0.00 5.69
584 586 2.037251 GGCGATGGGCAAGTTAGATCTA 59.963 50.000 0.00 0.00 46.16 1.98
643 645 3.074412 GTCGGCAAAGAAGATGAAGGAA 58.926 45.455 0.00 0.00 0.00 3.36
650 652 2.100631 CGGCGTCGGCAAAGAAGAT 61.101 57.895 19.59 0.00 42.47 2.40
663 665 4.835927 GATGAGTTCATCCGGCGT 57.164 55.556 6.01 0.00 45.24 5.68
706 710 2.332869 CGCGCCTGATCTCGATCA 59.667 61.111 0.00 9.09 44.83 2.92
732 736 2.354805 CGACTAGGGTTTCAAGGGGAAG 60.355 54.545 0.00 0.00 36.72 3.46
790 796 5.136828 TCAAAATGGTTGGAGAGTTAGCAA 58.863 37.500 0.00 0.00 0.00 3.91
791 797 4.724399 TCAAAATGGTTGGAGAGTTAGCA 58.276 39.130 0.00 0.00 0.00 3.49
792 798 5.705609 TTCAAAATGGTTGGAGAGTTAGC 57.294 39.130 0.00 0.00 0.00 3.09
793 799 8.359642 TGATTTTCAAAATGGTTGGAGAGTTAG 58.640 33.333 0.00 0.00 0.00 2.34
794 800 8.243961 TGATTTTCAAAATGGTTGGAGAGTTA 57.756 30.769 0.00 0.00 0.00 2.24
795 801 7.123355 TGATTTTCAAAATGGTTGGAGAGTT 57.877 32.000 0.00 0.00 0.00 3.01
796 802 6.729690 TGATTTTCAAAATGGTTGGAGAGT 57.270 33.333 0.00 0.00 0.00 3.24
797 803 8.500773 CAAATGATTTTCAAAATGGTTGGAGAG 58.499 33.333 0.00 0.00 0.00 3.20
798 804 8.209584 TCAAATGATTTTCAAAATGGTTGGAGA 58.790 29.630 0.00 0.00 0.00 3.71
799 805 8.380743 TCAAATGATTTTCAAAATGGTTGGAG 57.619 30.769 0.00 0.00 0.00 3.86
800 806 8.743085 TTCAAATGATTTTCAAAATGGTTGGA 57.257 26.923 0.00 0.00 0.00 3.53
801 807 9.615295 GATTCAAATGATTTTCAAAATGGTTGG 57.385 29.630 0.00 0.00 0.00 3.77
802 808 9.320406 CGATTCAAATGATTTTCAAAATGGTTG 57.680 29.630 0.00 2.30 0.00 3.77
803 809 9.270640 TCGATTCAAATGATTTTCAAAATGGTT 57.729 25.926 0.00 0.00 0.00 3.67
842 859 1.274167 GTATCGTGGGAAGTGGTGACA 59.726 52.381 0.00 0.00 38.70 3.58
843 860 1.549170 AGTATCGTGGGAAGTGGTGAC 59.451 52.381 0.00 0.00 0.00 3.67
848 865 4.514441 AGACGTATAGTATCGTGGGAAGTG 59.486 45.833 10.89 0.00 40.39 3.16
849 866 4.712476 AGACGTATAGTATCGTGGGAAGT 58.288 43.478 10.89 0.00 40.39 3.01
850 867 6.981762 ATAGACGTATAGTATCGTGGGAAG 57.018 41.667 10.89 0.00 40.39 3.46
851 868 6.531594 CGTATAGACGTATAGTATCGTGGGAA 59.468 42.308 0.75 0.00 44.31 3.97
852 869 6.036470 CGTATAGACGTATAGTATCGTGGGA 58.964 44.000 0.75 0.33 44.31 4.37
853 870 6.266203 CGTATAGACGTATAGTATCGTGGG 57.734 45.833 0.75 0.00 44.31 4.61
869 886 3.119029 GGTTTGTGTGCTACCCGTATAGA 60.119 47.826 0.00 0.00 0.00 1.98
877 894 1.852067 CGGCAGGTTTGTGTGCTACC 61.852 60.000 0.00 0.00 39.76 3.18
881 898 4.645921 GCCGGCAGGTTTGTGTGC 62.646 66.667 24.80 0.00 40.50 4.57
921 938 3.003763 ACTCCAGGTTCCCGGAGC 61.004 66.667 18.06 0.00 43.15 4.70
972 990 4.446413 GGTGGGCGTCGTGGGTAG 62.446 72.222 0.00 0.00 0.00 3.18
1340 1358 4.825679 GGAGGAGGGGGTGGGGAG 62.826 77.778 0.00 0.00 0.00 4.30
1377 1395 2.230994 GACCTGCGCACATGAGGAGA 62.231 60.000 18.50 0.00 35.49 3.71
1382 1400 2.432456 GACGACCTGCGCACATGA 60.432 61.111 5.66 0.00 46.04 3.07
1383 1401 3.842126 CGACGACCTGCGCACATG 61.842 66.667 5.66 0.00 46.04 3.21
1384 1402 4.357947 ACGACGACCTGCGCACAT 62.358 61.111 5.66 0.00 46.04 3.21
1423 1444 1.603172 CGGATGTGCTCGAGGAATACC 60.603 57.143 15.58 13.49 0.00 2.73
1426 1447 1.227380 GCGGATGTGCTCGAGGAAT 60.227 57.895 15.58 7.87 0.00 3.01
1511 1547 0.109689 GACCAGTCAACGACGGAGAG 60.110 60.000 0.00 0.00 37.67 3.20
1539 1575 2.203209 AATCCTGCGGCCGAATCC 60.203 61.111 33.48 12.13 0.00 3.01
1541 1577 1.524621 CTCAATCCTGCGGCCGAAT 60.525 57.895 33.48 13.29 0.00 3.34
1542 1578 2.125147 CTCAATCCTGCGGCCGAA 60.125 61.111 33.48 20.72 0.00 4.30
1595 1633 1.004560 CACCTTCTTGAGCGAGCCA 60.005 57.895 0.00 0.00 0.00 4.75
1648 1687 3.112075 CACCTAGCGTGCACACCG 61.112 66.667 18.64 3.96 35.18 4.94
1753 1792 1.335597 CGACACTCCTCGTTGTAAGCA 60.336 52.381 0.00 0.00 0.00 3.91
1777 1816 4.356979 TCTGTAAGAGCCTCCGGG 57.643 61.111 0.00 0.00 38.67 5.73
1798 1837 2.485657 GGTATCAGGGCCTTACTTGAGC 60.486 54.545 1.32 0.00 0.00 4.26
1899 1938 2.808523 TCGCCTATCAGATGAAGCTG 57.191 50.000 0.00 0.00 37.24 4.24
1951 1990 8.454894 GGTAGCTAATGGAGAAAGAAAGAAAAG 58.545 37.037 0.00 0.00 0.00 2.27
1952 1991 8.164070 AGGTAGCTAATGGAGAAAGAAAGAAAA 58.836 33.333 0.00 0.00 0.00 2.29
1953 1992 7.607991 CAGGTAGCTAATGGAGAAAGAAAGAAA 59.392 37.037 0.00 0.00 0.00 2.52
2138 2181 8.671028 ACAAACTAAGTACAAATGAAGAACGTT 58.329 29.630 0.00 0.00 0.00 3.99
2158 2201 7.561021 AGACCAAAACAAAACAAAACAAACT 57.439 28.000 0.00 0.00 0.00 2.66
2234 2277 4.522022 GGCAATTTTCATATCTGGAGAGGG 59.478 45.833 0.00 0.00 0.00 4.30
2447 2505 5.835113 TGTAGCTCTGGGAAAATTTATGC 57.165 39.130 0.00 0.00 0.00 3.14
2540 2598 3.834489 ACCAAGATCAGAGGTGCATAG 57.166 47.619 0.00 0.00 33.57 2.23
2549 2607 2.297315 CGGCATAGCTACCAAGATCAGA 59.703 50.000 0.00 0.00 0.00 3.27
2700 2758 4.215827 GCACGTGTAGTAGATAGGTATGCT 59.784 45.833 18.38 0.00 0.00 3.79
2728 2786 8.316046 GCAAATGACAATGATAACAAGATTTCG 58.684 33.333 0.00 0.00 0.00 3.46
2772 2833 6.211515 CCACAAAATGCTAAATATCAGCCTC 58.788 40.000 6.77 0.00 38.29 4.70
2786 2847 2.697431 TAAGACGTGCCACAAAATGC 57.303 45.000 0.00 0.00 0.00 3.56
2857 2921 8.328758 ACAATCAATACCTGAATAAGACCAAGA 58.671 33.333 0.00 0.00 37.67 3.02
2875 2939 6.481313 CAGTACTTCCATCATCGACAATCAAT 59.519 38.462 0.00 0.00 0.00 2.57
3194 3259 3.206150 ACATGGTATTGGATTGAGCGTC 58.794 45.455 0.00 0.00 0.00 5.19
3419 3500 9.322769 ACCTAAGAGACTAGGAAACAGAATAAA 57.677 33.333 3.69 0.00 41.02 1.40
3421 3502 8.896722 AACCTAAGAGACTAGGAAACAGAATA 57.103 34.615 3.69 0.00 41.02 1.75
3434 3522 3.856747 AAGGGAGGAACCTAAGAGACT 57.143 47.619 0.00 0.00 40.87 3.24
3477 3565 4.585879 GGTACCATTTCCTCTGCAGTAAA 58.414 43.478 14.67 12.97 0.00 2.01
3543 3631 0.179089 CTCTGATTCCAGGACCAGCG 60.179 60.000 11.61 4.06 40.76 5.18
3622 3710 0.813210 GCATGCCTCCCGAGAAGAAG 60.813 60.000 6.36 0.00 0.00 2.85
3624 3712 0.397114 TAGCATGCCTCCCGAGAAGA 60.397 55.000 15.66 0.00 0.00 2.87
3631 3719 2.162408 GCGAATAAATAGCATGCCTCCC 59.838 50.000 15.66 0.00 0.00 4.30
3766 3854 6.210984 ACTAGATAGTATCGTGGGATTTTCCC 59.789 42.308 5.59 5.59 45.40 3.97
3800 3902 9.472361 CCAGATTTATTCCTTGCAAGATTATTG 57.528 33.333 28.05 9.83 0.00 1.90
3822 3924 1.918262 AGGGCAGAATGAACATCCAGA 59.082 47.619 0.00 0.00 39.69 3.86
3840 3951 1.475751 CCTGGCCATGCAGTAAGTAGG 60.476 57.143 5.51 0.00 0.00 3.18
3847 3958 3.583380 ACCACCTGGCCATGCAGT 61.583 61.111 5.51 1.13 39.32 4.40
3848 3959 3.066190 CACCACCTGGCCATGCAG 61.066 66.667 5.51 0.38 39.32 4.41
3855 3966 1.039856 ACATCAAAACACCACCTGGC 58.960 50.000 0.00 0.00 39.32 4.85
3926 4037 1.103803 GTATCTCCGTCCAGCTGACA 58.896 55.000 17.39 0.00 44.71 3.58
4054 4165 4.762289 AAGCTCTAATGAGTTACCCAGG 57.238 45.455 0.00 0.00 42.13 4.45
4291 4442 9.986833 GTGATAAAAACAAAAGACAGCAAAAAT 57.013 25.926 0.00 0.00 0.00 1.82
4307 4458 6.783892 ACATGTGCCATTTGTGATAAAAAC 57.216 33.333 0.00 0.00 0.00 2.43
4308 4459 7.714377 AGAAACATGTGCCATTTGTGATAAAAA 59.286 29.630 0.00 0.00 0.00 1.94
4322 4473 5.470098 TCTTCAGTTAAGAGAAACATGTGCC 59.530 40.000 0.00 0.00 39.36 5.01
4385 4539 9.932207 TCTCTGGTCGTTTTGATTAATAAGTTA 57.068 29.630 0.00 0.00 0.00 2.24
4387 4541 8.842358 TTCTCTGGTCGTTTTGATTAATAAGT 57.158 30.769 0.00 0.00 0.00 2.24
4394 4548 7.066284 CCATAATCTTCTCTGGTCGTTTTGATT 59.934 37.037 0.00 0.00 0.00 2.57
4418 4573 4.320861 CGATATTTTGCACAGAAACCACCA 60.321 41.667 0.00 0.00 0.00 4.17
4419 4574 4.165779 CGATATTTTGCACAGAAACCACC 58.834 43.478 0.00 0.00 0.00 4.61
4463 4618 2.735823 CAAGCAGAACTGGCAACTTTC 58.264 47.619 3.99 0.00 37.61 2.62
4551 4958 0.030638 TTTTGACCTTCGCTGCTTGC 59.969 50.000 0.00 0.00 38.57 4.01
4554 4961 1.172812 GGGTTTTGACCTTCGCTGCT 61.173 55.000 0.00 0.00 0.00 4.24
4593 5000 0.240678 ATTTGCTCGAACGCATTGCA 59.759 45.000 9.69 0.00 40.04 4.08
4596 5003 0.456653 GGCATTTGCTCGAACGCATT 60.457 50.000 0.00 0.00 40.04 3.56
4647 5054 2.433664 GGTGGTGTAAGGACCGCG 60.434 66.667 0.00 0.00 45.95 6.46
4652 5059 4.382320 GGCGCGGTGGTGTAAGGA 62.382 66.667 8.83 0.00 0.00 3.36
4754 5161 1.372087 CGCACTTGAGGAGGAATGCC 61.372 60.000 0.00 0.00 0.00 4.40
4770 5177 4.329545 GTTGGAGTGGAGGCCGCA 62.330 66.667 9.31 0.00 36.32 5.69
4793 5200 1.216710 GAAGAGCCTGGTGAGGACG 59.783 63.158 0.00 0.00 42.93 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.