Multiple sequence alignment - TraesCS5A01G479200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G479200 chr5A 100.000 2815 0 0 1 2815 652063438 652066252 0.000000e+00 5199.0
1 TraesCS5A01G479200 chr5A 89.422 1314 86 26 618 1910 652049968 652051249 0.000000e+00 1607.0
2 TraesCS5A01G479200 chr5B 90.943 1623 80 22 452 2020 660209081 660210690 0.000000e+00 2121.0
3 TraesCS5A01G479200 chr5B 89.773 1320 85 19 604 1910 660185951 660187233 0.000000e+00 1644.0
4 TraesCS5A01G479200 chr5B 88.235 153 13 4 2093 2242 660218323 660218473 8.010000e-41 178.0
5 TraesCS5A01G479200 chr5B 95.876 97 3 1 2664 2759 660218469 660218565 3.750000e-34 156.0
6 TraesCS5A01G479200 chr5B 97.015 67 2 0 2020 2086 660217982 660218048 2.290000e-21 113.0
7 TraesCS5A01G479200 chr5D 95.098 1326 35 10 594 1919 525760926 525762221 0.000000e+00 2061.0
8 TraesCS5A01G479200 chr5D 90.340 1325 85 23 599 1910 525731782 525733076 0.000000e+00 1698.0
9 TraesCS5A01G479200 chr5D 87.270 597 71 4 1 593 525760302 525760897 0.000000e+00 676.0
10 TraesCS5A01G479200 chr5D 91.885 382 30 1 2241 2621 378149544 378149925 1.480000e-147 532.0
11 TraesCS5A01G479200 chr5D 97.682 302 7 0 1943 2244 525762315 525762616 1.160000e-143 520.0
12 TraesCS5A01G479200 chr5D 83.768 499 78 3 1 496 486891963 486891465 1.180000e-128 470.0
13 TraesCS5A01G479200 chr5D 97.902 143 2 1 2618 2759 525762612 525762754 2.170000e-61 246.0
14 TraesCS5A01G479200 chr2A 87.373 491 60 2 3 491 17556614 17557104 1.890000e-156 562.0
15 TraesCS5A01G479200 chr7A 91.948 385 29 2 2240 2623 542091997 542091614 3.190000e-149 538.0
16 TraesCS5A01G479200 chr7A 91.473 387 30 3 2236 2620 127670467 127670082 1.920000e-146 529.0
17 TraesCS5A01G479200 chr6A 92.147 382 28 2 2242 2621 559129317 559128936 3.190000e-149 538.0
18 TraesCS5A01G479200 chr6A 91.688 385 30 2 2241 2624 499430571 499430188 1.480000e-147 532.0
19 TraesCS5A01G479200 chr6A 85.312 497 68 5 3 496 85051530 85051036 2.500000e-140 508.0
20 TraesCS5A01G479200 chrUn 91.731 387 31 1 2238 2623 24426002 24426388 1.150000e-148 536.0
21 TraesCS5A01G479200 chr6D 86.354 491 65 2 3 491 5203930 5204420 4.130000e-148 534.0
22 TraesCS5A01G479200 chr6D 84.739 498 73 3 1 496 434809504 434809008 1.950000e-136 496.0
23 TraesCS5A01G479200 chr6D 83.567 499 74 8 1 496 387874967 387874474 7.100000e-126 460.0
24 TraesCS5A01G479200 chr1D 91.645 383 31 1 2241 2622 17995579 17995197 1.920000e-146 529.0
25 TraesCS5A01G479200 chr1D 84.898 490 72 2 9 496 18694539 18694050 7.010000e-136 494.0
26 TraesCS5A01G479200 chr3A 91.667 384 27 5 2239 2619 197865839 197865458 6.910000e-146 527.0
27 TraesCS5A01G479200 chr7D 91.384 383 32 1 2241 2622 218475239 218475621 8.930000e-145 523.0
28 TraesCS5A01G479200 chr7B 83.534 498 79 3 1 496 629570309 629570805 1.980000e-126 462.0
29 TraesCS5A01G479200 chr1B 94.828 58 3 0 2083 2140 633788846 633788903 1.070000e-14 91.6
30 TraesCS5A01G479200 chr1B 94.828 58 3 0 2083 2140 633794182 633794239 1.070000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G479200 chr5A 652063438 652066252 2814 False 5199.00 5199 100.000 1 2815 1 chr5A.!!$F2 2814
1 TraesCS5A01G479200 chr5A 652049968 652051249 1281 False 1607.00 1607 89.422 618 1910 1 chr5A.!!$F1 1292
2 TraesCS5A01G479200 chr5B 660209081 660210690 1609 False 2121.00 2121 90.943 452 2020 1 chr5B.!!$F2 1568
3 TraesCS5A01G479200 chr5B 660185951 660187233 1282 False 1644.00 1644 89.773 604 1910 1 chr5B.!!$F1 1306
4 TraesCS5A01G479200 chr5D 525731782 525733076 1294 False 1698.00 1698 90.340 599 1910 1 chr5D.!!$F2 1311
5 TraesCS5A01G479200 chr5D 525760302 525762754 2452 False 875.75 2061 94.488 1 2759 4 chr5D.!!$F3 2758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 460 0.595095 GGCAAACTGTCAGCAGAAGG 59.405 55.0 0.0 0.0 45.28 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2402 2542 0.040058 TGGGTGCATGAAGAGGCATT 59.96 50.0 0.0 0.0 41.77 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.414408 GGATCAGAAAGCATATAATGGTCG 57.586 41.667 0.00 0.00 40.65 4.79
31 32 7.336931 AGAAAGCATATAATGGTCGACAACTTT 59.663 33.333 18.91 9.80 40.65 2.66
35 36 7.931407 AGCATATAATGGTCGACAACTTTATCA 59.069 33.333 18.91 3.48 35.90 2.15
36 37 8.223769 GCATATAATGGTCGACAACTTTATCAG 58.776 37.037 18.91 10.96 0.00 2.90
51 52 6.414732 ACTTTATCAGCAGCTATGGTTTGTA 58.585 36.000 0.00 0.00 34.07 2.41
52 53 6.316390 ACTTTATCAGCAGCTATGGTTTGTAC 59.684 38.462 0.00 0.00 34.07 2.90
62 63 4.569162 GCTATGGTTTGTACGATAAGTGCA 59.431 41.667 0.00 0.00 43.67 4.57
63 64 5.236478 GCTATGGTTTGTACGATAAGTGCAT 59.764 40.000 0.00 0.00 44.69 3.96
65 66 7.042321 GCTATGGTTTGTACGATAAGTGCATAA 60.042 37.037 0.00 0.00 44.69 1.90
94 95 3.120649 GGTGAGACGTTTACAATCTGTGC 60.121 47.826 0.00 0.00 0.00 4.57
95 96 3.493129 GTGAGACGTTTACAATCTGTGCA 59.507 43.478 0.00 0.00 0.00 4.57
99 100 2.616376 ACGTTTACAATCTGTGCAGCAA 59.384 40.909 0.00 0.00 0.00 3.91
113 114 3.427863 GTGCAGCAAAGAGAAAATGAAGC 59.572 43.478 0.00 0.00 0.00 3.86
132 133 1.547372 GCTCATTGCAAAGGGTGATGT 59.453 47.619 1.71 0.00 42.31 3.06
138 139 3.159213 TGCAAAGGGTGATGTTGAGAT 57.841 42.857 0.00 0.00 0.00 2.75
167 168 3.255149 GGGCATTATGATGAGCAGAAAGG 59.745 47.826 0.85 0.00 35.16 3.11
208 209 6.926826 TCTTCTTTGAGTACGTGCTTGATAAA 59.073 34.615 7.83 6.84 0.00 1.40
212 213 6.706055 TTGAGTACGTGCTTGATAAAGAAG 57.294 37.500 7.83 0.00 0.00 2.85
220 221 2.097629 GCTTGATAAAGAAGGGCGGTTC 59.902 50.000 0.00 0.00 0.00 3.62
241 242 2.656560 AGAGTATGTTCTGGTGCGAC 57.343 50.000 0.00 0.00 0.00 5.19
263 264 1.405821 CACAGTCACGGAGGGACTATC 59.594 57.143 4.49 0.00 43.47 2.08
271 272 2.158638 ACGGAGGGACTATCAGGACTAC 60.159 54.545 0.00 0.00 41.55 2.73
283 284 3.779444 TCAGGACTACAGAGATGTGGTT 58.221 45.455 0.00 0.00 33.63 3.67
286 287 4.462834 CAGGACTACAGAGATGTGGTTGTA 59.537 45.833 0.00 0.00 33.63 2.41
294 295 5.702670 ACAGAGATGTGGTTGTATTTGACAG 59.297 40.000 0.00 0.00 39.88 3.51
295 296 4.697352 AGAGATGTGGTTGTATTTGACAGC 59.303 41.667 0.00 0.00 39.88 4.40
305 306 7.066887 TGGTTGTATTTGACAGCACATATAAGG 59.933 37.037 0.00 0.00 40.86 2.69
309 310 6.683974 ATTTGACAGCACATATAAGGTGAC 57.316 37.500 11.00 6.92 38.54 3.67
313 314 6.179756 TGACAGCACATATAAGGTGACAAAT 58.820 36.000 11.00 0.00 38.54 2.32
314 315 7.334858 TGACAGCACATATAAGGTGACAAATA 58.665 34.615 11.00 0.00 38.54 1.40
315 316 7.992608 TGACAGCACATATAAGGTGACAAATAT 59.007 33.333 11.00 0.00 38.54 1.28
316 317 8.158169 ACAGCACATATAAGGTGACAAATATG 57.842 34.615 11.00 8.56 40.63 1.78
322 326 7.779798 ACATATAAGGTGACAAATATGGTTGCT 59.220 33.333 12.54 0.00 39.83 3.91
326 330 5.321102 AGGTGACAAATATGGTTGCTGTTA 58.679 37.500 0.00 0.00 31.29 2.41
331 335 6.435591 TGACAAATATGGTTGCTGTTAATCCA 59.564 34.615 0.00 0.00 31.29 3.41
336 340 8.588290 AATATGGTTGCTGTTAATCCACTTTA 57.412 30.769 0.00 0.00 0.00 1.85
337 341 5.699097 TGGTTGCTGTTAATCCACTTTAC 57.301 39.130 0.00 0.00 0.00 2.01
339 343 4.765339 GGTTGCTGTTAATCCACTTTACCT 59.235 41.667 0.00 0.00 0.00 3.08
352 356 6.839454 TCCACTTTACCTGTGTTAATAACCA 58.161 36.000 0.18 0.00 33.92 3.67
355 359 6.487331 CACTTTACCTGTGTTAATAACCACCA 59.513 38.462 0.18 0.00 0.00 4.17
358 362 5.975693 ACCTGTGTTAATAACCACCATTG 57.024 39.130 0.18 0.00 0.00 2.82
359 363 4.219725 ACCTGTGTTAATAACCACCATTGC 59.780 41.667 0.18 0.00 0.00 3.56
377 381 1.006086 GCACCACTGTTTTTGGTTGC 58.994 50.000 0.00 0.00 45.62 4.17
378 382 1.674221 GCACCACTGTTTTTGGTTGCA 60.674 47.619 9.59 0.00 45.62 4.08
381 385 3.673201 ACCACTGTTTTTGGTTGCACCA 61.673 45.455 4.16 4.16 45.62 4.17
390 394 2.886862 TGGTTGCACCATTGTTTCTG 57.113 45.000 4.16 0.00 44.79 3.02
396 400 1.873591 GCACCATTGTTTCTGACGAGT 59.126 47.619 0.00 0.00 0.00 4.18
397 401 2.290641 GCACCATTGTTTCTGACGAGTT 59.709 45.455 0.00 0.00 0.00 3.01
404 408 2.359848 TGTTTCTGACGAGTTCGAAGGA 59.640 45.455 8.72 0.00 43.02 3.36
422 426 0.721718 GAACGTATGTGTGGCTGCTC 59.278 55.000 0.00 0.00 0.00 4.26
435 439 2.239402 TGGCTGCTCCAGACATTTATGA 59.761 45.455 0.00 0.00 45.48 2.15
437 441 2.877168 GCTGCTCCAGACATTTATGAGG 59.123 50.000 0.00 0.00 32.44 3.86
456 460 0.595095 GGCAAACTGTCAGCAGAAGG 59.405 55.000 0.00 0.00 45.28 3.46
478 482 4.391830 GGCAAAGTCAATAATCACAGACGA 59.608 41.667 0.00 0.00 36.18 4.20
483 487 5.965922 AGTCAATAATCACAGACGATGACA 58.034 37.500 0.00 0.00 38.64 3.58
491 495 3.056891 TCACAGACGATGACACTGCAATA 60.057 43.478 0.00 0.00 35.38 1.90
496 500 3.871006 GACGATGACACTGCAATAATCCA 59.129 43.478 0.00 0.00 0.00 3.41
514 518 1.794116 CCAAAACCTGCGCAAATTCTG 59.206 47.619 13.05 5.56 0.00 3.02
517 521 2.642139 AACCTGCGCAAATTCTGATG 57.358 45.000 13.05 0.00 0.00 3.07
519 523 2.710377 ACCTGCGCAAATTCTGATGTA 58.290 42.857 13.05 0.00 0.00 2.29
610 644 5.048782 GTGTAGACTGGATAGATGAGAGCTG 60.049 48.000 0.00 0.00 0.00 4.24
733 769 1.156736 GCTGAAACTAAGCTTGGCGA 58.843 50.000 9.86 0.00 37.69 5.54
858 906 3.060895 GCACAGTAGATGAACGTAAGCAC 59.939 47.826 0.00 0.00 45.62 4.40
897 945 1.189403 GAAGCCGAACGAGTATCACG 58.811 55.000 0.00 0.00 33.17 4.35
1222 1282 8.564648 TGTATATGTGTTTATATATACGCGCC 57.435 34.615 5.73 0.00 42.31 6.53
1223 1283 8.189460 TGTATATGTGTTTATATATACGCGCCA 58.811 33.333 5.73 0.00 42.31 5.69
1224 1284 5.773239 ATGTGTTTATATATACGCGCCAC 57.227 39.130 5.73 0.00 0.00 5.01
1355 1423 4.154347 GCGGGTGGAGAGGCTCAG 62.154 72.222 18.26 0.05 31.08 3.35
1623 1691 0.034198 CCGTGTACACCATCCACACA 59.966 55.000 20.11 0.00 42.10 3.72
1702 1772 6.260870 TCTCTCCAAATATGATCTAGCGTC 57.739 41.667 0.00 0.00 0.00 5.19
1737 1807 7.406031 TCTTTAACCAGGAGCTATATATCGG 57.594 40.000 0.00 0.00 0.00 4.18
1815 1885 3.248266 GAAACAGTACGTGGACGCTAAT 58.752 45.455 0.00 0.00 44.43 1.73
1867 1937 2.358322 TCCCAGACAGAAACCAAACC 57.642 50.000 0.00 0.00 0.00 3.27
1880 1950 4.605640 AACCAAACCATTTCATGTGAGG 57.394 40.909 0.00 0.00 0.00 3.86
1919 1989 3.684788 GTGCTGTATTGTACAAGACCCTG 59.315 47.826 26.02 17.94 38.38 4.45
1920 1990 3.326588 TGCTGTATTGTACAAGACCCTGT 59.673 43.478 26.02 5.95 38.38 4.00
1923 1993 5.350640 GCTGTATTGTACAAGACCCTGTAAC 59.649 44.000 26.02 7.85 38.38 2.50
1924 1994 5.472148 TGTATTGTACAAGACCCTGTAACG 58.528 41.667 26.02 0.00 35.38 3.18
1925 1995 2.443887 TGTACAAGACCCTGTAACGC 57.556 50.000 0.00 0.00 33.66 4.84
1926 1996 1.965643 TGTACAAGACCCTGTAACGCT 59.034 47.619 0.00 0.00 33.66 5.07
1927 1997 3.156293 TGTACAAGACCCTGTAACGCTA 58.844 45.455 0.00 0.00 33.66 4.26
1928 1998 2.738013 ACAAGACCCTGTAACGCTAC 57.262 50.000 0.00 0.00 0.00 3.58
1929 1999 2.245582 ACAAGACCCTGTAACGCTACT 58.754 47.619 0.00 0.00 0.00 2.57
1930 2000 2.230750 ACAAGACCCTGTAACGCTACTC 59.769 50.000 0.00 0.00 0.00 2.59
1932 2002 2.736347 AGACCCTGTAACGCTACTCAT 58.264 47.619 0.00 0.00 0.00 2.90
1933 2003 3.894759 AGACCCTGTAACGCTACTCATA 58.105 45.455 0.00 0.00 0.00 2.15
1934 2004 4.471548 AGACCCTGTAACGCTACTCATAT 58.528 43.478 0.00 0.00 0.00 1.78
1935 2005 4.894114 AGACCCTGTAACGCTACTCATATT 59.106 41.667 0.00 0.00 0.00 1.28
1936 2006 4.945246 ACCCTGTAACGCTACTCATATTG 58.055 43.478 0.00 0.00 0.00 1.90
1941 2011 6.418226 CCTGTAACGCTACTCATATTGTTCTC 59.582 42.308 0.00 0.00 0.00 2.87
1968 2108 0.594028 TATCGATCAGTCAACGCGCC 60.594 55.000 5.73 0.00 0.00 6.53
2015 2155 3.814842 CCATACTGTTCTCTGTTGTTGCA 59.185 43.478 0.00 0.00 0.00 4.08
2048 2188 0.107848 AAAATACCAGTCCTCGCGGG 60.108 55.000 6.13 0.59 0.00 6.13
2244 2384 8.585189 AAGTAAACAGTCGAGTAAAACTTAGG 57.415 34.615 0.00 0.00 0.00 2.69
2245 2385 7.150640 AGTAAACAGTCGAGTAAAACTTAGGG 58.849 38.462 0.00 0.00 0.00 3.53
2246 2386 4.532314 ACAGTCGAGTAAAACTTAGGGG 57.468 45.455 0.00 0.00 0.00 4.79
2247 2387 3.260128 ACAGTCGAGTAAAACTTAGGGGG 59.740 47.826 0.00 0.00 0.00 5.40
2248 2388 3.260128 CAGTCGAGTAAAACTTAGGGGGT 59.740 47.826 0.00 0.00 0.00 4.95
2249 2389 3.260128 AGTCGAGTAAAACTTAGGGGGTG 59.740 47.826 0.00 0.00 0.00 4.61
2250 2390 2.027837 TCGAGTAAAACTTAGGGGGTGC 60.028 50.000 0.00 0.00 0.00 5.01
2251 2391 2.027469 CGAGTAAAACTTAGGGGGTGCT 60.027 50.000 0.00 0.00 0.00 4.40
2252 2392 3.558533 CGAGTAAAACTTAGGGGGTGCTT 60.559 47.826 0.00 0.00 0.00 3.91
2253 2393 3.756963 GAGTAAAACTTAGGGGGTGCTTG 59.243 47.826 0.00 0.00 0.00 4.01
2254 2394 2.767644 AAAACTTAGGGGGTGCTTGT 57.232 45.000 0.00 0.00 0.00 3.16
2255 2395 2.767644 AAACTTAGGGGGTGCTTGTT 57.232 45.000 0.00 0.00 0.00 2.83
2256 2396 2.767644 AACTTAGGGGGTGCTTGTTT 57.232 45.000 0.00 0.00 0.00 2.83
2257 2397 2.767644 ACTTAGGGGGTGCTTGTTTT 57.232 45.000 0.00 0.00 0.00 2.43
2258 2398 2.594131 ACTTAGGGGGTGCTTGTTTTC 58.406 47.619 0.00 0.00 0.00 2.29
2259 2399 2.091555 ACTTAGGGGGTGCTTGTTTTCA 60.092 45.455 0.00 0.00 0.00 2.69
2260 2400 2.286365 TAGGGGGTGCTTGTTTTCAG 57.714 50.000 0.00 0.00 0.00 3.02
2261 2401 0.469892 AGGGGGTGCTTGTTTTCAGG 60.470 55.000 0.00 0.00 0.00 3.86
2262 2402 1.471829 GGGGGTGCTTGTTTTCAGGG 61.472 60.000 0.00 0.00 0.00 4.45
2263 2403 0.469144 GGGGTGCTTGTTTTCAGGGA 60.469 55.000 0.00 0.00 0.00 4.20
2264 2404 0.673985 GGGTGCTTGTTTTCAGGGAC 59.326 55.000 0.00 0.00 44.77 4.46
2265 2405 1.692411 GGTGCTTGTTTTCAGGGACT 58.308 50.000 2.76 0.00 44.84 3.85
2266 2406 2.031870 GGTGCTTGTTTTCAGGGACTT 58.968 47.619 2.76 0.00 44.84 3.01
2267 2407 2.430694 GGTGCTTGTTTTCAGGGACTTT 59.569 45.455 2.76 0.00 44.84 2.66
2268 2408 3.118775 GGTGCTTGTTTTCAGGGACTTTT 60.119 43.478 2.76 0.00 44.84 2.27
2269 2409 4.503910 GTGCTTGTTTTCAGGGACTTTTT 58.496 39.130 0.00 0.00 42.89 1.94
2291 2431 7.797038 TTTTGTGTAGGGACTAGAAAAAGTC 57.203 36.000 0.00 0.00 41.46 3.01
2292 2432 6.742559 TTGTGTAGGGACTAGAAAAAGTCT 57.257 37.500 0.00 0.00 44.14 3.24
2293 2433 6.342338 TGTGTAGGGACTAGAAAAAGTCTC 57.658 41.667 0.00 0.01 44.14 3.36
2301 2441 8.766000 GGGACTAGAAAAAGTCTCTCTTAAAG 57.234 38.462 0.00 0.00 42.68 1.85
2302 2442 8.586744 GGGACTAGAAAAAGTCTCTCTTAAAGA 58.413 37.037 0.00 0.00 42.68 2.52
2303 2443 9.414295 GGACTAGAAAAAGTCTCTCTTAAAGAC 57.586 37.037 0.00 0.00 44.42 3.01
2327 2467 5.918426 TTTTTACCAAACGAGAGGGTTTT 57.082 34.783 0.00 0.00 38.01 2.43
2328 2468 5.918426 TTTTACCAAACGAGAGGGTTTTT 57.082 34.783 0.00 0.00 38.01 1.94
2401 2541 8.534333 AAGAGTCTTTTTGAAACTTTTCCAAC 57.466 30.769 0.00 0.00 36.36 3.77
2402 2542 7.666623 AGAGTCTTTTTGAAACTTTTCCAACA 58.333 30.769 0.00 0.00 36.36 3.33
2403 2543 8.147704 AGAGTCTTTTTGAAACTTTTCCAACAA 58.852 29.630 0.00 0.00 36.36 2.83
2404 2544 8.846943 AGTCTTTTTGAAACTTTTCCAACAAT 57.153 26.923 0.00 0.00 36.36 2.71
2405 2545 8.720562 AGTCTTTTTGAAACTTTTCCAACAATG 58.279 29.630 0.00 0.00 36.36 2.82
2406 2546 7.481483 GTCTTTTTGAAACTTTTCCAACAATGC 59.519 33.333 0.00 0.00 36.36 3.56
2407 2547 5.809719 TTTGAAACTTTTCCAACAATGCC 57.190 34.783 0.00 0.00 36.36 4.40
2408 2548 4.751767 TGAAACTTTTCCAACAATGCCT 57.248 36.364 0.00 0.00 36.36 4.75
2409 2549 4.692228 TGAAACTTTTCCAACAATGCCTC 58.308 39.130 0.00 0.00 36.36 4.70
2410 2550 4.405358 TGAAACTTTTCCAACAATGCCTCT 59.595 37.500 0.00 0.00 36.36 3.69
2411 2551 5.104982 TGAAACTTTTCCAACAATGCCTCTT 60.105 36.000 0.00 0.00 36.36 2.85
2412 2552 4.590850 ACTTTTCCAACAATGCCTCTTC 57.409 40.909 0.00 0.00 0.00 2.87
2413 2553 3.960102 ACTTTTCCAACAATGCCTCTTCA 59.040 39.130 0.00 0.00 0.00 3.02
2414 2554 4.590222 ACTTTTCCAACAATGCCTCTTCAT 59.410 37.500 0.00 0.00 0.00 2.57
2415 2555 4.524316 TTTCCAACAATGCCTCTTCATG 57.476 40.909 0.00 0.00 0.00 3.07
2416 2556 1.820519 TCCAACAATGCCTCTTCATGC 59.179 47.619 0.00 0.00 0.00 4.06
2417 2557 1.546923 CCAACAATGCCTCTTCATGCA 59.453 47.619 0.00 0.00 42.52 3.96
2418 2558 2.602878 CAACAATGCCTCTTCATGCAC 58.397 47.619 0.00 0.00 40.88 4.57
2419 2559 1.180029 ACAATGCCTCTTCATGCACC 58.820 50.000 0.00 0.00 40.88 5.01
2420 2560 0.458669 CAATGCCTCTTCATGCACCC 59.541 55.000 0.00 0.00 40.88 4.61
2421 2561 0.040058 AATGCCTCTTCATGCACCCA 59.960 50.000 0.00 0.00 40.88 4.51
2422 2562 0.260816 ATGCCTCTTCATGCACCCAT 59.739 50.000 0.00 0.00 40.88 4.00
2423 2563 0.040058 TGCCTCTTCATGCACCCATT 59.960 50.000 0.00 0.00 31.31 3.16
2424 2564 0.458669 GCCTCTTCATGCACCCATTG 59.541 55.000 0.00 0.00 0.00 2.82
2425 2565 1.108776 CCTCTTCATGCACCCATTGG 58.891 55.000 0.00 0.00 37.80 3.16
2427 2567 1.747355 CTCTTCATGCACCCATTGGTC 59.253 52.381 1.20 0.00 45.57 4.02
2428 2568 0.819582 CTTCATGCACCCATTGGTCC 59.180 55.000 1.20 0.00 45.57 4.46
2429 2569 0.964860 TTCATGCACCCATTGGTCCG 60.965 55.000 1.20 0.00 45.57 4.79
2430 2570 1.678635 CATGCACCCATTGGTCCGT 60.679 57.895 1.20 0.00 45.57 4.69
2431 2571 1.378514 ATGCACCCATTGGTCCGTC 60.379 57.895 1.20 0.00 45.57 4.79
2432 2572 2.033448 GCACCCATTGGTCCGTCA 59.967 61.111 1.20 0.00 45.57 4.35
2433 2573 1.378514 GCACCCATTGGTCCGTCAT 60.379 57.895 1.20 0.00 45.57 3.06
2434 2574 1.376609 GCACCCATTGGTCCGTCATC 61.377 60.000 1.20 0.00 45.57 2.92
2435 2575 0.253044 CACCCATTGGTCCGTCATCT 59.747 55.000 1.20 0.00 45.57 2.90
2436 2576 0.541863 ACCCATTGGTCCGTCATCTC 59.458 55.000 1.20 0.00 43.06 2.75
2437 2577 0.541392 CCCATTGGTCCGTCATCTCA 59.459 55.000 1.20 0.00 0.00 3.27
2438 2578 1.141657 CCCATTGGTCCGTCATCTCAT 59.858 52.381 1.20 0.00 0.00 2.90
2439 2579 2.216046 CCATTGGTCCGTCATCTCATG 58.784 52.381 0.00 0.00 0.00 3.07
2440 2580 2.216046 CATTGGTCCGTCATCTCATGG 58.784 52.381 0.00 0.00 0.00 3.66
2441 2581 1.275666 TTGGTCCGTCATCTCATGGT 58.724 50.000 0.00 0.00 0.00 3.55
2442 2582 0.536724 TGGTCCGTCATCTCATGGTG 59.463 55.000 0.00 0.00 0.00 4.17
2443 2583 0.537188 GGTCCGTCATCTCATGGTGT 59.463 55.000 0.00 0.00 0.00 4.16
2444 2584 1.066143 GGTCCGTCATCTCATGGTGTT 60.066 52.381 0.00 0.00 0.00 3.32
2445 2585 2.002586 GTCCGTCATCTCATGGTGTTG 58.997 52.381 0.00 0.00 0.00 3.33
2446 2586 1.623311 TCCGTCATCTCATGGTGTTGT 59.377 47.619 0.00 0.00 0.00 3.32
2447 2587 2.038426 TCCGTCATCTCATGGTGTTGTT 59.962 45.455 0.00 0.00 0.00 2.83
2448 2588 2.813754 CCGTCATCTCATGGTGTTGTTT 59.186 45.455 0.00 0.00 0.00 2.83
2449 2589 4.000325 CCGTCATCTCATGGTGTTGTTTA 59.000 43.478 0.00 0.00 0.00 2.01
2450 2590 4.454161 CCGTCATCTCATGGTGTTGTTTAA 59.546 41.667 0.00 0.00 0.00 1.52
2451 2591 5.123820 CCGTCATCTCATGGTGTTGTTTAAT 59.876 40.000 0.00 0.00 0.00 1.40
2452 2592 6.349280 CCGTCATCTCATGGTGTTGTTTAATT 60.349 38.462 0.00 0.00 0.00 1.40
2453 2593 6.524239 CGTCATCTCATGGTGTTGTTTAATTG 59.476 38.462 0.00 0.00 0.00 2.32
2454 2594 7.370383 GTCATCTCATGGTGTTGTTTAATTGT 58.630 34.615 0.00 0.00 0.00 2.71
2455 2595 7.867403 GTCATCTCATGGTGTTGTTTAATTGTT 59.133 33.333 0.00 0.00 0.00 2.83
2456 2596 9.072375 TCATCTCATGGTGTTGTTTAATTGTTA 57.928 29.630 0.00 0.00 0.00 2.41
2457 2597 9.859427 CATCTCATGGTGTTGTTTAATTGTTAT 57.141 29.630 0.00 0.00 0.00 1.89
2482 2622 8.918202 TTTTTCTATATACTAGGGGCAACATG 57.082 34.615 0.00 0.00 39.74 3.21
2483 2623 6.620877 TTCTATATACTAGGGGCAACATGG 57.379 41.667 0.00 0.00 39.74 3.66
2484 2624 5.661565 TCTATATACTAGGGGCAACATGGT 58.338 41.667 0.00 0.00 39.74 3.55
2485 2625 4.910458 ATATACTAGGGGCAACATGGTC 57.090 45.455 0.00 0.00 39.74 4.02
2486 2626 1.959710 TACTAGGGGCAACATGGTCA 58.040 50.000 0.00 0.00 39.74 4.02
2487 2627 1.298953 ACTAGGGGCAACATGGTCAT 58.701 50.000 0.00 0.00 39.74 3.06
2488 2628 1.640670 ACTAGGGGCAACATGGTCATT 59.359 47.619 0.00 0.00 39.74 2.57
2489 2629 2.042979 ACTAGGGGCAACATGGTCATTT 59.957 45.455 0.00 0.00 39.74 2.32
2490 2630 2.917713 AGGGGCAACATGGTCATTTA 57.082 45.000 0.00 0.00 39.74 1.40
2491 2631 3.182887 AGGGGCAACATGGTCATTTAA 57.817 42.857 0.00 0.00 39.74 1.52
2492 2632 3.723325 AGGGGCAACATGGTCATTTAAT 58.277 40.909 0.00 0.00 39.74 1.40
2493 2633 4.877773 AGGGGCAACATGGTCATTTAATA 58.122 39.130 0.00 0.00 39.74 0.98
2494 2634 5.276440 AGGGGCAACATGGTCATTTAATAA 58.724 37.500 0.00 0.00 39.74 1.40
2495 2635 5.128663 AGGGGCAACATGGTCATTTAATAAC 59.871 40.000 0.00 0.00 39.74 1.89
2496 2636 5.356426 GGGCAACATGGTCATTTAATAACC 58.644 41.667 0.00 0.00 39.74 2.85
2497 2637 5.128663 GGGCAACATGGTCATTTAATAACCT 59.871 40.000 0.00 0.00 39.74 3.50
2498 2638 6.273071 GGCAACATGGTCATTTAATAACCTC 58.727 40.000 0.00 0.00 34.05 3.85
2499 2639 6.096846 GGCAACATGGTCATTTAATAACCTCT 59.903 38.462 0.00 0.00 34.05 3.69
2500 2640 7.284489 GGCAACATGGTCATTTAATAACCTCTA 59.716 37.037 0.00 0.00 34.05 2.43
2501 2641 8.345565 GCAACATGGTCATTTAATAACCTCTAG 58.654 37.037 0.00 0.00 34.05 2.43
2502 2642 8.840321 CAACATGGTCATTTAATAACCTCTAGG 58.160 37.037 0.00 0.00 42.17 3.02
2503 2643 8.331931 ACATGGTCATTTAATAACCTCTAGGA 57.668 34.615 2.23 0.00 38.94 2.94
2504 2644 8.778059 ACATGGTCATTTAATAACCTCTAGGAA 58.222 33.333 2.23 0.00 38.94 3.36
2505 2645 9.277783 CATGGTCATTTAATAACCTCTAGGAAG 57.722 37.037 2.23 0.00 38.94 3.46
2506 2646 7.802117 TGGTCATTTAATAACCTCTAGGAAGG 58.198 38.462 2.23 0.00 42.55 3.46
2507 2647 7.147373 TGGTCATTTAATAACCTCTAGGAAGGG 60.147 40.741 2.23 0.00 41.04 3.95
2508 2648 7.072076 GGTCATTTAATAACCTCTAGGAAGGGA 59.928 40.741 2.23 0.00 41.04 4.20
2509 2649 7.932491 GTCATTTAATAACCTCTAGGAAGGGAC 59.068 40.741 2.23 0.00 41.04 4.46
2510 2650 7.849904 TCATTTAATAACCTCTAGGAAGGGACT 59.150 37.037 2.23 0.00 41.04 3.85
2511 2651 9.155785 CATTTAATAACCTCTAGGAAGGGACTA 57.844 37.037 2.23 0.00 41.04 2.59
2512 2652 8.779096 TTTAATAACCTCTAGGAAGGGACTAG 57.221 38.462 2.23 0.00 41.04 2.57
2513 2653 3.691698 AACCTCTAGGAAGGGACTAGG 57.308 52.381 2.23 0.00 41.04 3.02
2514 2654 1.860906 ACCTCTAGGAAGGGACTAGGG 59.139 57.143 2.23 0.00 41.04 3.53
2515 2655 2.145298 CCTCTAGGAAGGGACTAGGGA 58.855 57.143 1.08 0.00 40.69 4.20
2516 2656 2.158430 CCTCTAGGAAGGGACTAGGGAC 60.158 59.091 1.08 0.00 40.69 4.46
2517 2657 2.787035 CTCTAGGAAGGGACTAGGGACT 59.213 54.545 0.00 0.00 40.69 3.85
2518 2658 3.205733 CTCTAGGAAGGGACTAGGGACTT 59.794 52.174 0.00 0.00 40.69 3.01
2519 2659 3.601537 TCTAGGAAGGGACTAGGGACTTT 59.398 47.826 0.00 0.00 38.49 2.66
2520 2660 3.293215 AGGAAGGGACTAGGGACTTTT 57.707 47.619 0.00 0.00 38.49 2.27
2521 2661 3.610260 AGGAAGGGACTAGGGACTTTTT 58.390 45.455 0.00 0.00 38.49 1.94
2522 2662 4.771338 AGGAAGGGACTAGGGACTTTTTA 58.229 43.478 0.00 0.00 38.49 1.52
2523 2663 4.783763 AGGAAGGGACTAGGGACTTTTTAG 59.216 45.833 0.00 0.00 38.49 1.85
2524 2664 4.535294 GGAAGGGACTAGGGACTTTTTAGT 59.465 45.833 0.00 0.00 38.49 2.24
2525 2665 5.338219 GGAAGGGACTAGGGACTTTTTAGTC 60.338 48.000 0.00 3.01 38.49 2.59
2526 2666 5.026093 AGGGACTAGGGACTTTTTAGTCT 57.974 43.478 9.84 0.00 41.77 3.24
2527 2667 5.024785 AGGGACTAGGGACTTTTTAGTCTC 58.975 45.833 9.84 6.72 42.56 3.36
2535 2675 6.659824 AGGGACTTTTTAGTCTCTGAAAACA 58.340 36.000 6.89 0.00 46.88 2.83
2536 2676 7.116736 AGGGACTTTTTAGTCTCTGAAAACAA 58.883 34.615 6.89 0.00 46.88 2.83
2537 2677 7.614192 AGGGACTTTTTAGTCTCTGAAAACAAA 59.386 33.333 6.89 0.00 46.88 2.83
2538 2678 8.414003 GGGACTTTTTAGTCTCTGAAAACAAAT 58.586 33.333 5.40 0.00 36.42 2.32
2546 2686 7.751768 AGTCTCTGAAAACAAATAGAAAGGG 57.248 36.000 0.00 0.00 0.00 3.95
2547 2687 7.518188 AGTCTCTGAAAACAAATAGAAAGGGA 58.482 34.615 0.00 0.00 0.00 4.20
2548 2688 7.445707 AGTCTCTGAAAACAAATAGAAAGGGAC 59.554 37.037 0.00 0.00 0.00 4.46
2565 2705 5.286760 AGGGACTTTTTAGGGACTAGAGA 57.713 43.478 0.00 0.00 37.71 3.10
2566 2706 5.024785 AGGGACTTTTTAGGGACTAGAGAC 58.975 45.833 0.00 0.00 37.71 3.36
2567 2707 5.024785 GGGACTTTTTAGGGACTAGAGACT 58.975 45.833 0.00 0.00 44.25 3.24
2568 2708 5.484644 GGGACTTTTTAGGGACTAGAGACTT 59.515 44.000 0.00 0.00 44.25 3.01
2569 2709 6.013553 GGGACTTTTTAGGGACTAGAGACTTT 60.014 42.308 0.00 0.00 44.25 2.66
2570 2710 7.451732 GGACTTTTTAGGGACTAGAGACTTTT 58.548 38.462 0.00 0.00 44.25 2.27
2571 2711 7.937942 GGACTTTTTAGGGACTAGAGACTTTTT 59.062 37.037 0.00 0.00 44.25 1.94
2572 2712 9.993454 GACTTTTTAGGGACTAGAGACTTTTTA 57.007 33.333 0.00 0.00 44.25 1.52
2577 2717 9.734984 TTTAGGGACTAGAGACTTTTTAATTGG 57.265 33.333 0.00 0.00 44.25 3.16
2578 2718 6.722328 AGGGACTAGAGACTTTTTAATTGGG 58.278 40.000 0.00 0.00 36.02 4.12
2579 2719 6.504279 AGGGACTAGAGACTTTTTAATTGGGA 59.496 38.462 0.00 0.00 36.02 4.37
2580 2720 6.598457 GGGACTAGAGACTTTTTAATTGGGAC 59.402 42.308 0.00 0.00 0.00 4.46
2581 2721 7.395617 GGACTAGAGACTTTTTAATTGGGACT 58.604 38.462 0.00 0.00 0.00 3.85
2582 2722 8.537858 GGACTAGAGACTTTTTAATTGGGACTA 58.462 37.037 0.00 0.00 0.00 2.59
2583 2723 9.589111 GACTAGAGACTTTTTAATTGGGACTAG 57.411 37.037 0.00 0.00 0.00 2.57
2584 2724 9.322769 ACTAGAGACTTTTTAATTGGGACTAGA 57.677 33.333 0.00 0.00 0.00 2.43
2587 2727 9.862149 AGAGACTTTTTAATTGGGACTAGAAAA 57.138 29.630 0.00 0.00 0.00 2.29
2614 2754 7.482474 GTCCTATGACTAGAGAACTAAACACC 58.518 42.308 0.00 0.00 38.53 4.16
2615 2755 7.122353 GTCCTATGACTAGAGAACTAAACACCA 59.878 40.741 0.00 0.00 38.53 4.17
2616 2756 7.122353 TCCTATGACTAGAGAACTAAACACCAC 59.878 40.741 0.00 0.00 0.00 4.16
2617 2757 5.464030 TGACTAGAGAACTAAACACCACC 57.536 43.478 0.00 0.00 0.00 4.61
2618 2758 5.145564 TGACTAGAGAACTAAACACCACCT 58.854 41.667 0.00 0.00 0.00 4.00
2619 2759 5.601313 TGACTAGAGAACTAAACACCACCTT 59.399 40.000 0.00 0.00 0.00 3.50
2620 2760 6.779049 TGACTAGAGAACTAAACACCACCTTA 59.221 38.462 0.00 0.00 0.00 2.69
2621 2761 7.039923 TGACTAGAGAACTAAACACCACCTTAG 60.040 40.741 0.00 0.00 0.00 2.18
2630 2770 1.343465 ACACCACCTTAGACAACCGAG 59.657 52.381 0.00 0.00 0.00 4.63
2634 2774 3.135167 ACCACCTTAGACAACCGAGAAAA 59.865 43.478 0.00 0.00 0.00 2.29
2756 2896 1.353609 GCGCGTACGTGGTAAATGGT 61.354 55.000 28.26 0.00 42.83 3.55
2757 2897 0.367548 CGCGTACGTGGTAAATGGTG 59.632 55.000 20.84 0.00 33.53 4.17
2758 2898 1.431496 GCGTACGTGGTAAATGGTGT 58.569 50.000 17.90 0.00 0.00 4.16
2759 2899 1.391144 GCGTACGTGGTAAATGGTGTC 59.609 52.381 17.90 0.00 0.00 3.67
2760 2900 2.927871 GCGTACGTGGTAAATGGTGTCT 60.928 50.000 17.90 0.00 0.00 3.41
2761 2901 2.664568 CGTACGTGGTAAATGGTGTCTG 59.335 50.000 7.22 0.00 0.00 3.51
2762 2902 3.612241 CGTACGTGGTAAATGGTGTCTGA 60.612 47.826 7.22 0.00 0.00 3.27
2763 2903 3.478857 ACGTGGTAAATGGTGTCTGAA 57.521 42.857 0.00 0.00 0.00 3.02
2764 2904 3.811083 ACGTGGTAAATGGTGTCTGAAA 58.189 40.909 0.00 0.00 0.00 2.69
2765 2905 3.562557 ACGTGGTAAATGGTGTCTGAAAC 59.437 43.478 0.00 0.00 0.00 2.78
2766 2906 3.562141 CGTGGTAAATGGTGTCTGAAACA 59.438 43.478 0.00 0.00 34.78 2.83
2767 2907 4.319477 CGTGGTAAATGGTGTCTGAAACAG 60.319 45.833 0.00 0.00 38.97 3.16
2768 2908 4.819630 GTGGTAAATGGTGTCTGAAACAGA 59.180 41.667 0.00 0.00 38.97 3.41
2769 2909 5.049405 GTGGTAAATGGTGTCTGAAACAGAG 60.049 44.000 0.00 0.00 41.46 3.35
2770 2910 5.163248 TGGTAAATGGTGTCTGAAACAGAGA 60.163 40.000 0.00 0.00 41.46 3.10
2771 2911 5.409826 GGTAAATGGTGTCTGAAACAGAGAG 59.590 44.000 0.00 0.00 41.46 3.20
2772 2912 4.963318 AATGGTGTCTGAAACAGAGAGA 57.037 40.909 0.00 0.00 41.46 3.10
2773 2913 5.495926 AATGGTGTCTGAAACAGAGAGAT 57.504 39.130 0.00 0.00 41.46 2.75
2774 2914 4.527509 TGGTGTCTGAAACAGAGAGATC 57.472 45.455 0.00 0.00 41.46 2.75
2775 2915 3.897505 TGGTGTCTGAAACAGAGAGATCA 59.102 43.478 0.00 0.00 41.46 2.92
2776 2916 4.021632 TGGTGTCTGAAACAGAGAGATCAG 60.022 45.833 0.00 0.00 41.46 2.90
2777 2917 4.021544 GGTGTCTGAAACAGAGAGATCAGT 60.022 45.833 0.00 0.00 41.46 3.41
2778 2918 5.184096 GGTGTCTGAAACAGAGAGATCAGTA 59.816 44.000 0.00 0.00 41.46 2.74
2779 2919 6.294787 GGTGTCTGAAACAGAGAGATCAGTAA 60.295 42.308 0.00 0.00 41.46 2.24
2780 2920 7.148641 GTGTCTGAAACAGAGAGATCAGTAAA 58.851 38.462 1.53 0.00 41.46 2.01
2781 2921 7.816995 GTGTCTGAAACAGAGAGATCAGTAAAT 59.183 37.037 1.53 0.00 41.46 1.40
2782 2922 7.816513 TGTCTGAAACAGAGAGATCAGTAAATG 59.183 37.037 1.53 0.00 41.46 2.32
2783 2923 6.815641 TCTGAAACAGAGAGATCAGTAAATGC 59.184 38.462 0.00 0.00 40.11 3.56
2784 2924 6.466812 TGAAACAGAGAGATCAGTAAATGCA 58.533 36.000 0.00 0.00 0.00 3.96
2785 2925 6.369890 TGAAACAGAGAGATCAGTAAATGCAC 59.630 38.462 0.00 0.00 0.00 4.57
2786 2926 5.674052 ACAGAGAGATCAGTAAATGCACT 57.326 39.130 0.00 0.00 0.00 4.40
2787 2927 5.417811 ACAGAGAGATCAGTAAATGCACTG 58.582 41.667 0.00 0.00 46.04 3.66
2788 2928 4.270566 CAGAGAGATCAGTAAATGCACTGC 59.729 45.833 0.00 0.00 44.62 4.40
2789 2929 3.539604 AGAGATCAGTAAATGCACTGCC 58.460 45.455 0.00 0.00 44.62 4.85
2790 2930 2.283298 AGATCAGTAAATGCACTGCCG 58.717 47.619 0.00 0.00 44.62 5.69
2791 2931 1.331756 GATCAGTAAATGCACTGCCGG 59.668 52.381 0.00 0.00 44.62 6.13
2792 2932 1.137404 CAGTAAATGCACTGCCGGC 59.863 57.895 22.73 22.73 39.54 6.13
2793 2933 2.046285 AGTAAATGCACTGCCGGCC 61.046 57.895 26.77 9.02 0.00 6.13
2794 2934 2.753849 TAAATGCACTGCCGGCCC 60.754 61.111 26.77 10.34 0.00 5.80
2795 2935 3.575703 TAAATGCACTGCCGGCCCA 62.576 57.895 26.77 16.10 0.00 5.36
2796 2936 4.992740 AATGCACTGCCGGCCCAA 62.993 61.111 26.77 3.87 0.00 4.12
2797 2937 4.992740 ATGCACTGCCGGCCCAAA 62.993 61.111 26.77 3.41 0.00 3.28
2805 2945 3.291383 CCGGCCCAAACGCTTGAA 61.291 61.111 0.00 0.00 34.14 2.69
2806 2946 2.725008 CGGCCCAAACGCTTGAAA 59.275 55.556 0.00 0.00 34.14 2.69
2807 2947 1.660264 CGGCCCAAACGCTTGAAAC 60.660 57.895 0.00 0.00 34.14 2.78
2808 2948 1.660264 GGCCCAAACGCTTGAAACG 60.660 57.895 0.00 0.00 34.14 3.60
2809 2949 2.300066 GCCCAAACGCTTGAAACGC 61.300 57.895 0.00 0.00 34.14 4.84
2810 2950 1.064946 CCCAAACGCTTGAAACGCA 59.935 52.632 0.00 0.00 34.14 5.24
2811 2951 0.318614 CCCAAACGCTTGAAACGCAT 60.319 50.000 0.00 0.00 34.14 4.73
2812 2952 0.777631 CCAAACGCTTGAAACGCATG 59.222 50.000 0.00 0.00 34.14 4.06
2813 2953 1.476074 CAAACGCTTGAAACGCATGT 58.524 45.000 0.00 0.00 34.14 3.21
2814 2954 2.603412 CCAAACGCTTGAAACGCATGTA 60.603 45.455 0.00 0.00 34.14 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.878397 ACCATAGCTGCTGATAAAGTTGTC 59.122 41.667 13.43 0.00 0.00 3.18
31 32 4.098807 TCGTACAAACCATAGCTGCTGATA 59.901 41.667 13.43 0.00 0.00 2.15
35 36 3.543680 ATCGTACAAACCATAGCTGCT 57.456 42.857 7.57 7.57 0.00 4.24
36 37 4.809426 ACTTATCGTACAAACCATAGCTGC 59.191 41.667 0.00 0.00 0.00 5.25
51 52 9.424319 CTCACCTAATAATTATGCACTTATCGT 57.576 33.333 0.00 0.00 0.00 3.73
52 53 9.639601 TCTCACCTAATAATTATGCACTTATCG 57.360 33.333 0.00 0.00 0.00 2.92
65 66 9.314321 CAGATTGTAAACGTCTCACCTAATAAT 57.686 33.333 0.00 0.00 0.00 1.28
75 76 3.423645 GCTGCACAGATTGTAAACGTCTC 60.424 47.826 0.81 0.00 0.00 3.36
94 95 5.117355 TGAGCTTCATTTTCTCTTTGCTG 57.883 39.130 0.00 0.00 0.00 4.41
95 96 5.979288 ATGAGCTTCATTTTCTCTTTGCT 57.021 34.783 0.00 0.00 32.13 3.91
99 100 5.717078 TGCAATGAGCTTCATTTTCTCTT 57.283 34.783 8.19 0.00 44.03 2.85
113 114 3.256383 TCAACATCACCCTTTGCAATGAG 59.744 43.478 13.58 3.08 0.00 2.90
118 119 2.655090 TCTCAACATCACCCTTTGCA 57.345 45.000 0.00 0.00 0.00 4.08
132 133 0.040058 AATGCCCACTGCCATCTCAA 59.960 50.000 0.00 0.00 40.16 3.02
138 139 1.214923 TCATCATAATGCCCACTGCCA 59.785 47.619 0.00 0.00 40.16 4.92
156 157 0.320771 GTCCTTCGCCTTTCTGCTCA 60.321 55.000 0.00 0.00 0.00 4.26
167 168 0.321996 AAGAAGTCAGGGTCCTTCGC 59.678 55.000 0.00 0.00 41.51 4.70
208 209 1.640917 TACTCTTGAACCGCCCTTCT 58.359 50.000 0.00 0.00 0.00 2.85
212 213 2.007608 GAACATACTCTTGAACCGCCC 58.992 52.381 0.00 0.00 0.00 6.13
220 221 2.668457 GTCGCACCAGAACATACTCTTG 59.332 50.000 0.00 0.00 0.00 3.02
241 242 3.680786 TCCCTCCGTGACTGTGCG 61.681 66.667 0.00 0.00 0.00 5.34
263 264 3.259374 ACAACCACATCTCTGTAGTCCTG 59.741 47.826 0.00 0.00 33.14 3.86
271 272 5.391310 GCTGTCAAATACAACCACATCTCTG 60.391 44.000 0.00 0.00 37.74 3.35
283 284 7.279981 GTCACCTTATATGTGCTGTCAAATACA 59.720 37.037 0.00 0.00 33.71 2.29
286 287 6.179756 TGTCACCTTATATGTGCTGTCAAAT 58.820 36.000 0.00 0.00 33.71 2.32
294 295 7.510549 ACCATATTTGTCACCTTATATGTGC 57.489 36.000 0.00 0.00 31.91 4.57
295 296 7.862372 GCAACCATATTTGTCACCTTATATGTG 59.138 37.037 0.00 0.00 31.91 3.21
305 306 6.751888 GGATTAACAGCAACCATATTTGTCAC 59.248 38.462 0.00 0.00 0.00 3.67
309 310 6.866480 AGTGGATTAACAGCAACCATATTTG 58.134 36.000 0.00 0.00 33.19 2.32
313 314 6.376018 GGTAAAGTGGATTAACAGCAACCATA 59.624 38.462 0.00 0.00 33.19 2.74
314 315 5.185056 GGTAAAGTGGATTAACAGCAACCAT 59.815 40.000 0.00 0.00 33.19 3.55
315 316 4.521256 GGTAAAGTGGATTAACAGCAACCA 59.479 41.667 0.00 0.00 0.00 3.67
316 317 4.765339 AGGTAAAGTGGATTAACAGCAACC 59.235 41.667 0.00 0.00 0.00 3.77
322 326 8.927675 ATTAACACAGGTAAAGTGGATTAACA 57.072 30.769 0.00 0.00 41.21 2.41
326 330 7.945664 TGGTTATTAACACAGGTAAAGTGGATT 59.054 33.333 8.73 0.00 41.21 3.01
331 335 6.603224 TGGTGGTTATTAACACAGGTAAAGT 58.397 36.000 8.73 0.00 39.31 2.66
336 340 4.219725 GCAATGGTGGTTATTAACACAGGT 59.780 41.667 8.73 0.00 39.31 4.00
337 341 4.219507 TGCAATGGTGGTTATTAACACAGG 59.780 41.667 8.73 3.33 39.31 4.00
339 343 4.021894 GGTGCAATGGTGGTTATTAACACA 60.022 41.667 8.73 4.95 39.31 3.72
352 356 2.419851 CCAAAAACAGTGGTGCAATGGT 60.420 45.455 0.00 0.00 33.50 3.55
377 381 3.362986 CGAACTCGTCAGAAACAATGGTG 60.363 47.826 0.00 0.00 34.11 4.17
378 382 2.800544 CGAACTCGTCAGAAACAATGGT 59.199 45.455 0.00 0.00 34.11 3.55
381 385 3.741344 CCTTCGAACTCGTCAGAAACAAT 59.259 43.478 0.00 0.00 40.80 2.71
390 394 2.601481 TACGTTCCTTCGAACTCGTC 57.399 50.000 12.81 0.00 45.30 4.20
396 400 2.679450 CCACACATACGTTCCTTCGAA 58.321 47.619 0.00 0.00 34.70 3.71
397 401 1.670674 GCCACACATACGTTCCTTCGA 60.671 52.381 0.00 0.00 34.70 3.71
404 408 0.673644 GGAGCAGCCACACATACGTT 60.674 55.000 0.00 0.00 36.34 3.99
407 411 0.250234 TCTGGAGCAGCCACACATAC 59.750 55.000 0.00 0.00 43.33 2.39
410 414 2.427320 GTCTGGAGCAGCCACACA 59.573 61.111 0.00 0.00 43.33 3.72
422 426 4.019174 AGTTTGCCCTCATAAATGTCTGG 58.981 43.478 0.00 0.00 0.00 3.86
430 434 2.224744 TGCTGACAGTTTGCCCTCATAA 60.225 45.455 3.99 0.00 0.00 1.90
435 439 0.183492 TTCTGCTGACAGTTTGCCCT 59.817 50.000 3.99 0.00 44.77 5.19
437 441 0.595095 CCTTCTGCTGACAGTTTGCC 59.405 55.000 3.99 0.00 44.77 4.52
456 460 5.530519 TCGTCTGTGATTATTGACTTTGC 57.469 39.130 0.00 0.00 0.00 3.68
478 482 5.481473 AGGTTTTGGATTATTGCAGTGTCAT 59.519 36.000 0.00 0.00 0.00 3.06
483 487 3.367292 CGCAGGTTTTGGATTATTGCAGT 60.367 43.478 0.00 0.00 0.00 4.40
491 495 2.837532 ATTTGCGCAGGTTTTGGATT 57.162 40.000 11.31 0.00 0.00 3.01
496 500 3.243839 ACATCAGAATTTGCGCAGGTTTT 60.244 39.130 11.31 2.84 0.00 2.43
566 572 3.925913 CACCATTTGATTTTACGCCAAGG 59.074 43.478 0.00 0.00 0.00 3.61
610 644 2.143876 AAATATGGACTGGTGTGGCC 57.856 50.000 0.00 0.00 37.90 5.36
648 682 5.647589 TGCTCTAGTTAAATGACAGTACGG 58.352 41.667 0.00 0.00 0.00 4.02
656 690 9.905713 ATTGAGGTAAATGCTCTAGTTAAATGA 57.094 29.630 0.00 0.00 0.00 2.57
733 769 0.111061 TGACCTTGTTGCTCTGCCAT 59.889 50.000 0.00 0.00 0.00 4.40
858 906 1.660607 CGGCCGTGCAAGCTATATATG 59.339 52.381 19.50 0.00 0.00 1.78
1355 1423 0.662970 CAGCTCGCGCTTCCTATCTC 60.663 60.000 5.56 0.00 46.47 2.75
1702 1772 5.853936 TCCTGGTTAAAGATATCATCACGG 58.146 41.667 5.32 0.00 0.00 4.94
1737 1807 2.933056 GCTGCTCTCCAACCTACAAGAC 60.933 54.545 0.00 0.00 0.00 3.01
1867 1937 4.202020 CTGGAATCAGCCTCACATGAAATG 60.202 45.833 0.00 0.00 41.56 2.32
1880 1950 2.490903 AGCACACAAATCTGGAATCAGC 59.509 45.455 0.00 0.00 40.69 4.26
1919 1989 6.973474 ACAGAGAACAATATGAGTAGCGTTAC 59.027 38.462 0.48 0.48 0.00 2.50
1920 1990 7.096884 ACAGAGAACAATATGAGTAGCGTTA 57.903 36.000 0.00 0.00 0.00 3.18
1923 1993 5.233050 CCAACAGAGAACAATATGAGTAGCG 59.767 44.000 0.00 0.00 0.00 4.26
1924 1994 6.109359 ACCAACAGAGAACAATATGAGTAGC 58.891 40.000 0.00 0.00 0.00 3.58
1925 1995 9.823647 ATAACCAACAGAGAACAATATGAGTAG 57.176 33.333 0.00 0.00 0.00 2.57
1926 1996 9.817809 GATAACCAACAGAGAACAATATGAGTA 57.182 33.333 0.00 0.00 0.00 2.59
1927 1997 7.492669 CGATAACCAACAGAGAACAATATGAGT 59.507 37.037 0.00 0.00 0.00 3.41
1928 1998 7.706607 TCGATAACCAACAGAGAACAATATGAG 59.293 37.037 0.00 0.00 0.00 2.90
1929 1999 7.552459 TCGATAACCAACAGAGAACAATATGA 58.448 34.615 0.00 0.00 0.00 2.15
1930 2000 7.770801 TCGATAACCAACAGAGAACAATATG 57.229 36.000 0.00 0.00 0.00 1.78
1932 2002 7.552459 TGATCGATAACCAACAGAGAACAATA 58.448 34.615 0.00 0.00 0.00 1.90
1933 2003 6.406370 TGATCGATAACCAACAGAGAACAAT 58.594 36.000 0.00 0.00 0.00 2.71
1934 2004 5.789521 TGATCGATAACCAACAGAGAACAA 58.210 37.500 0.00 0.00 0.00 2.83
1935 2005 5.047306 ACTGATCGATAACCAACAGAGAACA 60.047 40.000 14.43 0.00 0.00 3.18
1936 2006 5.411781 ACTGATCGATAACCAACAGAGAAC 58.588 41.667 14.43 0.00 0.00 3.01
1941 2011 4.031765 CGTTGACTGATCGATAACCAACAG 59.968 45.833 21.48 15.86 33.97 3.16
1968 2108 3.207669 GCTCTCCTTGCATGCCGG 61.208 66.667 16.68 15.74 0.00 6.13
2015 2155 5.103940 ACTGGTATTTTGAGCCATCATACCT 60.104 40.000 16.15 4.04 38.55 3.08
2048 2188 4.394712 CTGTCCTGCGTCCCCACC 62.395 72.222 0.00 0.00 0.00 4.61
2143 2283 3.985279 TCGAGAATAAGAAACCACACACG 59.015 43.478 0.00 0.00 0.00 4.49
2227 2367 3.260128 CACCCCCTAAGTTTTACTCGACT 59.740 47.826 0.00 0.00 0.00 4.18
2238 2378 2.091555 TGAAAACAAGCACCCCCTAAGT 60.092 45.455 0.00 0.00 0.00 2.24
2244 2384 0.469144 TCCCTGAAAACAAGCACCCC 60.469 55.000 0.00 0.00 0.00 4.95
2245 2385 0.673985 GTCCCTGAAAACAAGCACCC 59.326 55.000 0.00 0.00 0.00 4.61
2246 2386 1.692411 AGTCCCTGAAAACAAGCACC 58.308 50.000 0.00 0.00 0.00 5.01
2247 2387 3.801114 AAAGTCCCTGAAAACAAGCAC 57.199 42.857 0.00 0.00 0.00 4.40
2248 2388 4.817318 AAAAAGTCCCTGAAAACAAGCA 57.183 36.364 0.00 0.00 0.00 3.91
2266 2406 8.050930 AGACTTTTTCTAGTCCCTACACAAAAA 58.949 33.333 0.00 0.00 44.50 1.94
2267 2407 7.571025 AGACTTTTTCTAGTCCCTACACAAAA 58.429 34.615 0.00 0.00 44.50 2.44
2268 2408 7.070821 AGAGACTTTTTCTAGTCCCTACACAAA 59.929 37.037 0.00 0.00 44.50 2.83
2269 2409 6.553852 AGAGACTTTTTCTAGTCCCTACACAA 59.446 38.462 0.00 0.00 44.50 3.33
2270 2410 6.075984 AGAGACTTTTTCTAGTCCCTACACA 58.924 40.000 0.00 0.00 44.50 3.72
2271 2411 6.434965 AGAGAGACTTTTTCTAGTCCCTACAC 59.565 42.308 0.00 0.00 44.50 2.90
2272 2412 6.553857 AGAGAGACTTTTTCTAGTCCCTACA 58.446 40.000 0.00 0.00 44.50 2.74
2273 2413 7.470935 AAGAGAGACTTTTTCTAGTCCCTAC 57.529 40.000 0.00 0.00 44.50 3.18
2274 2414 9.597681 TTTAAGAGAGACTTTTTCTAGTCCCTA 57.402 33.333 0.00 0.00 44.50 3.53
2275 2415 8.493787 TTTAAGAGAGACTTTTTCTAGTCCCT 57.506 34.615 0.00 0.00 44.50 4.20
2276 2416 8.586744 TCTTTAAGAGAGACTTTTTCTAGTCCC 58.413 37.037 0.00 0.00 44.50 4.46
2277 2417 9.414295 GTCTTTAAGAGAGACTTTTTCTAGTCC 57.586 37.037 0.00 0.00 44.50 3.85
2305 2445 5.918426 AAAACCCTCTCGTTTGGTAAAAA 57.082 34.783 0.00 0.00 36.12 1.94
2306 2446 5.918426 AAAAACCCTCTCGTTTGGTAAAA 57.082 34.783 0.00 0.00 36.12 1.52
2375 2515 9.634163 GTTGGAAAAGTTTCAAAAAGACTCTTA 57.366 29.630 6.15 0.00 38.92 2.10
2376 2516 8.147704 TGTTGGAAAAGTTTCAAAAAGACTCTT 58.852 29.630 6.15 0.00 38.92 2.85
2377 2517 7.666623 TGTTGGAAAAGTTTCAAAAAGACTCT 58.333 30.769 6.15 0.00 38.92 3.24
2378 2518 7.883229 TGTTGGAAAAGTTTCAAAAAGACTC 57.117 32.000 6.15 0.00 38.92 3.36
2379 2519 8.720562 CATTGTTGGAAAAGTTTCAAAAAGACT 58.279 29.630 6.15 0.00 38.92 3.24
2380 2520 7.481483 GCATTGTTGGAAAAGTTTCAAAAAGAC 59.519 33.333 6.15 0.00 38.92 3.01
2381 2521 7.361628 GGCATTGTTGGAAAAGTTTCAAAAAGA 60.362 33.333 6.15 0.00 38.92 2.52
2382 2522 6.746822 GGCATTGTTGGAAAAGTTTCAAAAAG 59.253 34.615 6.15 0.00 38.92 2.27
2383 2523 6.432472 AGGCATTGTTGGAAAAGTTTCAAAAA 59.568 30.769 6.15 0.00 38.92 1.94
2384 2524 5.942826 AGGCATTGTTGGAAAAGTTTCAAAA 59.057 32.000 6.15 0.00 38.92 2.44
2385 2525 5.495640 AGGCATTGTTGGAAAAGTTTCAAA 58.504 33.333 6.15 0.00 38.92 2.69
2386 2526 5.096443 AGGCATTGTTGGAAAAGTTTCAA 57.904 34.783 6.15 0.00 38.92 2.69
2387 2527 4.405358 AGAGGCATTGTTGGAAAAGTTTCA 59.595 37.500 6.15 0.00 38.92 2.69
2388 2528 4.948847 AGAGGCATTGTTGGAAAAGTTTC 58.051 39.130 0.00 0.00 36.46 2.78
2389 2529 5.104982 TGAAGAGGCATTGTTGGAAAAGTTT 60.105 36.000 0.00 0.00 0.00 2.66
2390 2530 4.405358 TGAAGAGGCATTGTTGGAAAAGTT 59.595 37.500 0.00 0.00 0.00 2.66
2391 2531 3.960102 TGAAGAGGCATTGTTGGAAAAGT 59.040 39.130 0.00 0.00 0.00 2.66
2392 2532 4.589216 TGAAGAGGCATTGTTGGAAAAG 57.411 40.909 0.00 0.00 0.00 2.27
2393 2533 4.800249 GCATGAAGAGGCATTGTTGGAAAA 60.800 41.667 0.00 0.00 0.00 2.29
2394 2534 3.306225 GCATGAAGAGGCATTGTTGGAAA 60.306 43.478 0.00 0.00 0.00 3.13
2395 2535 2.231964 GCATGAAGAGGCATTGTTGGAA 59.768 45.455 0.00 0.00 0.00 3.53
2396 2536 1.820519 GCATGAAGAGGCATTGTTGGA 59.179 47.619 0.00 0.00 0.00 3.53
2397 2537 1.546923 TGCATGAAGAGGCATTGTTGG 59.453 47.619 0.00 0.00 32.89 3.77
2398 2538 2.602878 GTGCATGAAGAGGCATTGTTG 58.397 47.619 0.00 0.00 41.77 3.33
2399 2539 1.547372 GGTGCATGAAGAGGCATTGTT 59.453 47.619 0.00 0.00 41.77 2.83
2400 2540 1.180029 GGTGCATGAAGAGGCATTGT 58.820 50.000 0.00 0.00 41.77 2.71
2401 2541 0.458669 GGGTGCATGAAGAGGCATTG 59.541 55.000 0.00 0.00 41.77 2.82
2402 2542 0.040058 TGGGTGCATGAAGAGGCATT 59.960 50.000 0.00 0.00 41.77 3.56
2403 2543 0.260816 ATGGGTGCATGAAGAGGCAT 59.739 50.000 0.00 0.00 41.77 4.40
2404 2544 0.040058 AATGGGTGCATGAAGAGGCA 59.960 50.000 0.00 0.00 36.28 4.75
2405 2545 0.458669 CAATGGGTGCATGAAGAGGC 59.541 55.000 0.00 0.00 0.00 4.70
2406 2546 1.108776 CCAATGGGTGCATGAAGAGG 58.891 55.000 0.00 0.00 0.00 3.69
2418 2558 0.541392 TGAGATGACGGACCAATGGG 59.459 55.000 3.55 0.00 41.29 4.00
2419 2559 2.216046 CATGAGATGACGGACCAATGG 58.784 52.381 0.00 0.00 0.00 3.16
2420 2560 2.216046 CCATGAGATGACGGACCAATG 58.784 52.381 0.00 0.00 0.00 2.82
2421 2561 1.839994 ACCATGAGATGACGGACCAAT 59.160 47.619 0.00 0.00 0.00 3.16
2422 2562 1.066215 CACCATGAGATGACGGACCAA 60.066 52.381 0.00 0.00 0.00 3.67
2423 2563 0.536724 CACCATGAGATGACGGACCA 59.463 55.000 0.00 0.00 0.00 4.02
2424 2564 0.537188 ACACCATGAGATGACGGACC 59.463 55.000 0.00 0.00 0.00 4.46
2425 2565 2.002586 CAACACCATGAGATGACGGAC 58.997 52.381 0.00 0.00 0.00 4.79
2426 2566 1.623311 ACAACACCATGAGATGACGGA 59.377 47.619 0.00 0.00 0.00 4.69
2427 2567 2.099141 ACAACACCATGAGATGACGG 57.901 50.000 0.00 0.00 0.00 4.79
2428 2568 5.605564 TTAAACAACACCATGAGATGACG 57.394 39.130 0.00 0.00 0.00 4.35
2429 2569 7.370383 ACAATTAAACAACACCATGAGATGAC 58.630 34.615 0.00 0.00 0.00 3.06
2430 2570 7.523293 ACAATTAAACAACACCATGAGATGA 57.477 32.000 0.00 0.00 0.00 2.92
2431 2571 9.859427 ATAACAATTAAACAACACCATGAGATG 57.141 29.630 0.00 0.00 0.00 2.90
2456 2596 9.520515 CATGTTGCCCCTAGTATATAGAAAAAT 57.479 33.333 0.00 0.00 0.00 1.82
2457 2597 7.942341 CCATGTTGCCCCTAGTATATAGAAAAA 59.058 37.037 0.00 0.00 0.00 1.94
2458 2598 7.073215 ACCATGTTGCCCCTAGTATATAGAAAA 59.927 37.037 0.00 0.00 0.00 2.29
2459 2599 6.561070 ACCATGTTGCCCCTAGTATATAGAAA 59.439 38.462 0.00 0.00 0.00 2.52
2460 2600 6.088819 ACCATGTTGCCCCTAGTATATAGAA 58.911 40.000 0.00 0.00 0.00 2.10
2461 2601 5.661565 ACCATGTTGCCCCTAGTATATAGA 58.338 41.667 0.00 0.00 0.00 1.98
2462 2602 5.483937 TGACCATGTTGCCCCTAGTATATAG 59.516 44.000 0.00 0.00 0.00 1.31
2463 2603 5.407936 TGACCATGTTGCCCCTAGTATATA 58.592 41.667 0.00 0.00 0.00 0.86
2464 2604 4.239495 TGACCATGTTGCCCCTAGTATAT 58.761 43.478 0.00 0.00 0.00 0.86
2465 2605 3.659841 TGACCATGTTGCCCCTAGTATA 58.340 45.455 0.00 0.00 0.00 1.47
2466 2606 2.487775 TGACCATGTTGCCCCTAGTAT 58.512 47.619 0.00 0.00 0.00 2.12
2467 2607 1.959710 TGACCATGTTGCCCCTAGTA 58.040 50.000 0.00 0.00 0.00 1.82
2468 2608 1.298953 ATGACCATGTTGCCCCTAGT 58.701 50.000 0.00 0.00 0.00 2.57
2469 2609 2.442236 AATGACCATGTTGCCCCTAG 57.558 50.000 0.00 0.00 0.00 3.02
2470 2610 2.917713 AAATGACCATGTTGCCCCTA 57.082 45.000 0.00 0.00 0.00 3.53
2471 2611 2.917713 TAAATGACCATGTTGCCCCT 57.082 45.000 0.00 0.00 0.00 4.79
2472 2612 5.356426 GTTATTAAATGACCATGTTGCCCC 58.644 41.667 0.00 0.00 0.00 5.80
2473 2613 5.128663 AGGTTATTAAATGACCATGTTGCCC 59.871 40.000 6.26 0.00 41.10 5.36
2474 2614 6.096846 AGAGGTTATTAAATGACCATGTTGCC 59.903 38.462 6.26 0.00 41.10 4.52
2475 2615 7.100458 AGAGGTTATTAAATGACCATGTTGC 57.900 36.000 6.26 0.00 41.10 4.17
2476 2616 8.840321 CCTAGAGGTTATTAAATGACCATGTTG 58.160 37.037 6.26 0.00 41.10 3.33
2477 2617 8.778059 TCCTAGAGGTTATTAAATGACCATGTT 58.222 33.333 6.26 0.00 41.10 2.71
2478 2618 8.331931 TCCTAGAGGTTATTAAATGACCATGT 57.668 34.615 6.26 0.00 41.10 3.21
2479 2619 9.277783 CTTCCTAGAGGTTATTAAATGACCATG 57.722 37.037 6.26 0.00 41.10 3.66
2480 2620 8.440771 CCTTCCTAGAGGTTATTAAATGACCAT 58.559 37.037 6.26 0.00 41.10 3.55
2481 2621 7.147373 CCCTTCCTAGAGGTTATTAAATGACCA 60.147 40.741 6.26 0.00 41.10 4.02
2482 2622 7.072076 TCCCTTCCTAGAGGTTATTAAATGACC 59.928 40.741 0.00 0.00 39.09 4.02
2483 2623 7.932491 GTCCCTTCCTAGAGGTTATTAAATGAC 59.068 40.741 0.00 0.00 34.88 3.06
2484 2624 7.849904 AGTCCCTTCCTAGAGGTTATTAAATGA 59.150 37.037 0.00 0.00 34.88 2.57
2485 2625 8.035448 AGTCCCTTCCTAGAGGTTATTAAATG 57.965 38.462 0.00 0.00 34.88 2.32
2486 2626 9.382307 CTAGTCCCTTCCTAGAGGTTATTAAAT 57.618 37.037 0.00 0.00 35.01 1.40
2487 2627 7.788385 CCTAGTCCCTTCCTAGAGGTTATTAAA 59.212 40.741 0.00 0.00 35.01 1.52
2488 2628 7.303713 CCTAGTCCCTTCCTAGAGGTTATTAA 58.696 42.308 0.00 0.00 35.01 1.40
2489 2629 6.183361 CCCTAGTCCCTTCCTAGAGGTTATTA 60.183 46.154 0.00 0.00 35.01 0.98
2490 2630 5.401587 CCCTAGTCCCTTCCTAGAGGTTATT 60.402 48.000 0.00 0.00 35.01 1.40
2491 2631 4.108287 CCCTAGTCCCTTCCTAGAGGTTAT 59.892 50.000 0.00 0.00 35.01 1.89
2492 2632 3.466344 CCCTAGTCCCTTCCTAGAGGTTA 59.534 52.174 0.00 0.00 35.01 2.85
2493 2633 2.247897 CCCTAGTCCCTTCCTAGAGGTT 59.752 54.545 0.00 0.00 35.01 3.50
2494 2634 1.860906 CCCTAGTCCCTTCCTAGAGGT 59.139 57.143 0.00 0.00 35.01 3.85
2495 2635 2.145298 TCCCTAGTCCCTTCCTAGAGG 58.855 57.143 0.00 0.00 35.01 3.69
2496 2636 2.787035 AGTCCCTAGTCCCTTCCTAGAG 59.213 54.545 0.00 0.00 35.01 2.43
2497 2637 2.874447 AGTCCCTAGTCCCTTCCTAGA 58.126 52.381 0.00 0.00 35.01 2.43
2498 2638 3.691698 AAGTCCCTAGTCCCTTCCTAG 57.308 52.381 0.00 0.00 33.23 3.02
2499 2639 4.431158 AAAAGTCCCTAGTCCCTTCCTA 57.569 45.455 0.00 0.00 0.00 2.94
2500 2640 3.293215 AAAAGTCCCTAGTCCCTTCCT 57.707 47.619 0.00 0.00 0.00 3.36
2501 2641 4.535294 ACTAAAAAGTCCCTAGTCCCTTCC 59.465 45.833 0.00 0.00 0.00 3.46
2502 2642 5.484644 AGACTAAAAAGTCCCTAGTCCCTTC 59.515 44.000 2.00 0.00 41.59 3.46
2503 2643 5.413277 AGACTAAAAAGTCCCTAGTCCCTT 58.587 41.667 2.00 0.00 41.59 3.95
2504 2644 5.024785 GAGACTAAAAAGTCCCTAGTCCCT 58.975 45.833 2.00 0.00 41.59 4.20
2505 2645 5.024785 AGAGACTAAAAAGTCCCTAGTCCC 58.975 45.833 2.00 0.00 41.59 4.46
2506 2646 5.715753 TCAGAGACTAAAAAGTCCCTAGTCC 59.284 44.000 2.00 0.00 41.59 3.85
2507 2647 6.837471 TCAGAGACTAAAAAGTCCCTAGTC 57.163 41.667 2.00 0.00 41.17 2.59
2508 2648 7.613551 TTTCAGAGACTAAAAAGTCCCTAGT 57.386 36.000 2.00 0.00 39.50 2.57
2509 2649 7.931948 TGTTTTCAGAGACTAAAAAGTCCCTAG 59.068 37.037 2.00 0.00 39.50 3.02
2510 2650 7.798071 TGTTTTCAGAGACTAAAAAGTCCCTA 58.202 34.615 2.00 0.00 39.50 3.53
2511 2651 6.659824 TGTTTTCAGAGACTAAAAAGTCCCT 58.340 36.000 2.00 0.00 39.50 4.20
2512 2652 6.937436 TGTTTTCAGAGACTAAAAAGTCCC 57.063 37.500 2.00 0.00 39.50 4.46
2520 2660 9.284968 CCCTTTCTATTTGTTTTCAGAGACTAA 57.715 33.333 0.00 0.00 0.00 2.24
2521 2661 8.656806 TCCCTTTCTATTTGTTTTCAGAGACTA 58.343 33.333 0.00 0.00 0.00 2.59
2522 2662 7.445707 GTCCCTTTCTATTTGTTTTCAGAGACT 59.554 37.037 0.00 0.00 0.00 3.24
2523 2663 7.445707 AGTCCCTTTCTATTTGTTTTCAGAGAC 59.554 37.037 0.00 0.00 0.00 3.36
2524 2664 7.518188 AGTCCCTTTCTATTTGTTTTCAGAGA 58.482 34.615 0.00 0.00 0.00 3.10
2525 2665 7.751768 AGTCCCTTTCTATTTGTTTTCAGAG 57.248 36.000 0.00 0.00 0.00 3.35
2526 2666 8.533569 AAAGTCCCTTTCTATTTGTTTTCAGA 57.466 30.769 0.00 0.00 0.00 3.27
2527 2667 9.599866 AAAAAGTCCCTTTCTATTTGTTTTCAG 57.400 29.630 0.00 0.00 31.99 3.02
2531 2671 8.647796 CCCTAAAAAGTCCCTTTCTATTTGTTT 58.352 33.333 0.00 0.00 31.99 2.83
2532 2672 8.008332 TCCCTAAAAAGTCCCTTTCTATTTGTT 58.992 33.333 0.00 0.00 31.99 2.83
2533 2673 7.450634 GTCCCTAAAAAGTCCCTTTCTATTTGT 59.549 37.037 0.00 0.00 31.99 2.83
2534 2674 7.670140 AGTCCCTAAAAAGTCCCTTTCTATTTG 59.330 37.037 0.00 0.00 31.99 2.32
2535 2675 7.766628 AGTCCCTAAAAAGTCCCTTTCTATTT 58.233 34.615 0.00 0.00 31.99 1.40
2536 2676 7.344599 AGTCCCTAAAAAGTCCCTTTCTATT 57.655 36.000 0.00 0.00 31.99 1.73
2537 2677 6.971932 AGTCCCTAAAAAGTCCCTTTCTAT 57.028 37.500 0.00 0.00 31.99 1.98
2538 2678 7.251195 TCTAGTCCCTAAAAAGTCCCTTTCTA 58.749 38.462 0.00 0.00 31.99 2.10
2539 2679 6.089502 TCTAGTCCCTAAAAAGTCCCTTTCT 58.910 40.000 0.00 0.00 31.99 2.52
2540 2680 6.212993 TCTCTAGTCCCTAAAAAGTCCCTTTC 59.787 42.308 0.00 0.00 31.99 2.62
2541 2681 6.013553 GTCTCTAGTCCCTAAAAAGTCCCTTT 60.014 42.308 0.00 0.00 34.94 3.11
2542 2682 5.484644 GTCTCTAGTCCCTAAAAAGTCCCTT 59.515 44.000 0.00 0.00 0.00 3.95
2543 2683 5.024785 GTCTCTAGTCCCTAAAAAGTCCCT 58.975 45.833 0.00 0.00 0.00 4.20
2544 2684 5.024785 AGTCTCTAGTCCCTAAAAAGTCCC 58.975 45.833 0.00 0.00 0.00 4.46
2545 2685 6.608539 AAGTCTCTAGTCCCTAAAAAGTCC 57.391 41.667 0.00 0.00 0.00 3.85
2546 2686 8.905660 AAAAAGTCTCTAGTCCCTAAAAAGTC 57.094 34.615 0.00 0.00 0.00 3.01
2551 2691 9.734984 CCAATTAAAAAGTCTCTAGTCCCTAAA 57.265 33.333 0.00 0.00 0.00 1.85
2552 2692 8.326529 CCCAATTAAAAAGTCTCTAGTCCCTAA 58.673 37.037 0.00 0.00 0.00 2.69
2553 2693 7.681168 TCCCAATTAAAAAGTCTCTAGTCCCTA 59.319 37.037 0.00 0.00 0.00 3.53
2554 2694 6.504279 TCCCAATTAAAAAGTCTCTAGTCCCT 59.496 38.462 0.00 0.00 0.00 4.20
2555 2695 6.598457 GTCCCAATTAAAAAGTCTCTAGTCCC 59.402 42.308 0.00 0.00 0.00 4.46
2556 2696 7.395617 AGTCCCAATTAAAAAGTCTCTAGTCC 58.604 38.462 0.00 0.00 0.00 3.85
2557 2697 9.589111 CTAGTCCCAATTAAAAAGTCTCTAGTC 57.411 37.037 0.00 0.00 0.00 2.59
2558 2698 9.322769 TCTAGTCCCAATTAAAAAGTCTCTAGT 57.677 33.333 0.00 0.00 0.00 2.57
2561 2701 9.862149 TTTTCTAGTCCCAATTAAAAAGTCTCT 57.138 29.630 0.00 0.00 0.00 3.10
2589 2729 7.122353 TGGTGTTTAGTTCTCTAGTCATAGGAC 59.878 40.741 0.00 0.00 44.66 3.85
2590 2730 7.122353 GTGGTGTTTAGTTCTCTAGTCATAGGA 59.878 40.741 0.00 0.00 0.00 2.94
2591 2731 7.259161 GTGGTGTTTAGTTCTCTAGTCATAGG 58.741 42.308 0.00 0.00 0.00 2.57
2592 2732 7.122948 AGGTGGTGTTTAGTTCTCTAGTCATAG 59.877 40.741 0.00 0.00 0.00 2.23
2593 2733 6.952358 AGGTGGTGTTTAGTTCTCTAGTCATA 59.048 38.462 0.00 0.00 0.00 2.15
2594 2734 5.780793 AGGTGGTGTTTAGTTCTCTAGTCAT 59.219 40.000 0.00 0.00 0.00 3.06
2595 2735 5.145564 AGGTGGTGTTTAGTTCTCTAGTCA 58.854 41.667 0.00 0.00 0.00 3.41
2596 2736 5.725325 AGGTGGTGTTTAGTTCTCTAGTC 57.275 43.478 0.00 0.00 0.00 2.59
2597 2737 7.008941 TCTAAGGTGGTGTTTAGTTCTCTAGT 58.991 38.462 0.00 0.00 0.00 2.57
2598 2738 7.039923 TGTCTAAGGTGGTGTTTAGTTCTCTAG 60.040 40.741 0.00 0.00 0.00 2.43
2599 2739 6.779049 TGTCTAAGGTGGTGTTTAGTTCTCTA 59.221 38.462 0.00 0.00 0.00 2.43
2600 2740 5.601313 TGTCTAAGGTGGTGTTTAGTTCTCT 59.399 40.000 0.00 0.00 0.00 3.10
2601 2741 5.850614 TGTCTAAGGTGGTGTTTAGTTCTC 58.149 41.667 0.00 0.00 0.00 2.87
2602 2742 5.881923 TGTCTAAGGTGGTGTTTAGTTCT 57.118 39.130 0.00 0.00 0.00 3.01
2603 2743 5.237996 GGTTGTCTAAGGTGGTGTTTAGTTC 59.762 44.000 0.00 0.00 0.00 3.01
2604 2744 5.128205 GGTTGTCTAAGGTGGTGTTTAGTT 58.872 41.667 0.00 0.00 0.00 2.24
2605 2745 4.711399 GGTTGTCTAAGGTGGTGTTTAGT 58.289 43.478 0.00 0.00 0.00 2.24
2606 2746 3.744426 CGGTTGTCTAAGGTGGTGTTTAG 59.256 47.826 0.00 0.00 0.00 1.85
2607 2747 3.387374 TCGGTTGTCTAAGGTGGTGTTTA 59.613 43.478 0.00 0.00 0.00 2.01
2608 2748 2.171027 TCGGTTGTCTAAGGTGGTGTTT 59.829 45.455 0.00 0.00 0.00 2.83
2609 2749 1.764134 TCGGTTGTCTAAGGTGGTGTT 59.236 47.619 0.00 0.00 0.00 3.32
2610 2750 1.343465 CTCGGTTGTCTAAGGTGGTGT 59.657 52.381 0.00 0.00 0.00 4.16
2611 2751 1.616865 TCTCGGTTGTCTAAGGTGGTG 59.383 52.381 0.00 0.00 0.00 4.17
2612 2752 2.005370 TCTCGGTTGTCTAAGGTGGT 57.995 50.000 0.00 0.00 0.00 4.16
2613 2753 3.396260 TTTCTCGGTTGTCTAAGGTGG 57.604 47.619 0.00 0.00 0.00 4.61
2614 2754 4.319549 GCTTTTTCTCGGTTGTCTAAGGTG 60.320 45.833 0.00 0.00 0.00 4.00
2615 2755 3.813724 GCTTTTTCTCGGTTGTCTAAGGT 59.186 43.478 0.00 0.00 0.00 3.50
2616 2756 3.813166 TGCTTTTTCTCGGTTGTCTAAGG 59.187 43.478 0.00 0.00 0.00 2.69
2617 2757 5.418310 TTGCTTTTTCTCGGTTGTCTAAG 57.582 39.130 0.00 0.00 0.00 2.18
2618 2758 5.821516 TTTGCTTTTTCTCGGTTGTCTAA 57.178 34.783 0.00 0.00 0.00 2.10
2619 2759 5.355910 AGTTTTGCTTTTTCTCGGTTGTCTA 59.644 36.000 0.00 0.00 0.00 2.59
2620 2760 4.157840 AGTTTTGCTTTTTCTCGGTTGTCT 59.842 37.500 0.00 0.00 0.00 3.41
2621 2761 4.265320 CAGTTTTGCTTTTTCTCGGTTGTC 59.735 41.667 0.00 0.00 0.00 3.18
2630 2770 7.255569 ACCTACAGTAACAGTTTTGCTTTTTC 58.744 34.615 0.00 0.00 0.00 2.29
2634 2774 6.350906 TGTACCTACAGTAACAGTTTTGCTT 58.649 36.000 0.00 0.00 31.05 3.91
2756 2896 6.901081 TTACTGATCTCTCTGTTTCAGACA 57.099 37.500 5.84 0.00 38.25 3.41
2757 2897 7.201513 GCATTTACTGATCTCTCTGTTTCAGAC 60.202 40.741 5.84 0.00 38.25 3.51
2758 2898 6.815641 GCATTTACTGATCTCTCTGTTTCAGA 59.184 38.462 5.84 0.00 38.25 3.27
2759 2899 6.592994 TGCATTTACTGATCTCTCTGTTTCAG 59.407 38.462 0.00 0.00 41.06 3.02
2760 2900 6.369890 GTGCATTTACTGATCTCTCTGTTTCA 59.630 38.462 0.00 0.00 35.46 2.69
2761 2901 6.593382 AGTGCATTTACTGATCTCTCTGTTTC 59.407 38.462 0.00 0.00 35.46 2.78
2762 2902 6.471146 AGTGCATTTACTGATCTCTCTGTTT 58.529 36.000 0.00 0.00 35.46 2.83
2763 2903 6.047511 AGTGCATTTACTGATCTCTCTGTT 57.952 37.500 0.00 0.00 35.46 3.16
2764 2904 5.674052 AGTGCATTTACTGATCTCTCTGT 57.326 39.130 0.00 0.00 37.35 3.41
2775 2915 2.046285 GGCCGGCAGTGCATTTACT 61.046 57.895 30.85 0.00 0.00 2.24
2776 2916 2.489751 GGCCGGCAGTGCATTTAC 59.510 61.111 30.85 1.84 0.00 2.01
2777 2917 2.753849 GGGCCGGCAGTGCATTTA 60.754 61.111 30.85 0.00 0.00 1.40
2778 2918 4.992740 TGGGCCGGCAGTGCATTT 62.993 61.111 30.85 0.00 0.00 2.32
2779 2919 4.992740 TTGGGCCGGCAGTGCATT 62.993 61.111 30.85 0.00 0.00 3.56
2780 2920 4.992740 TTTGGGCCGGCAGTGCAT 62.993 61.111 30.85 0.00 0.00 3.96
2788 2928 2.851071 TTTCAAGCGTTTGGGCCGG 61.851 57.895 12.29 0.00 34.97 6.13
2789 2929 1.660264 GTTTCAAGCGTTTGGGCCG 60.660 57.895 12.29 0.00 34.97 6.13
2790 2930 1.660264 CGTTTCAAGCGTTTGGGCC 60.660 57.895 12.29 0.00 34.97 5.80
2791 2931 2.300066 GCGTTTCAAGCGTTTGGGC 61.300 57.895 12.29 7.23 34.97 5.36
2792 2932 0.318614 ATGCGTTTCAAGCGTTTGGG 60.319 50.000 12.29 1.18 37.44 4.12
2793 2933 0.777631 CATGCGTTTCAAGCGTTTGG 59.222 50.000 12.29 0.00 37.44 3.28
2794 2934 1.476074 ACATGCGTTTCAAGCGTTTG 58.524 45.000 5.53 5.53 37.44 2.93
2795 2935 3.936585 ACATGCGTTTCAAGCGTTT 57.063 42.105 0.00 0.00 37.44 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.