Multiple sequence alignment - TraesCS5A01G478400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G478400 chr5A 100.000 5214 0 0 1 5214 651787352 651792565 0.000000e+00 9629.0
1 TraesCS5A01G478400 chr5A 86.992 492 48 9 927 1405 651748934 651749422 1.650000e-149 540.0
2 TraesCS5A01G478400 chr5A 87.852 461 44 5 955 1405 651734257 651734715 9.940000e-147 531.0
3 TraesCS5A01G478400 chr5A 84.759 374 35 10 3849 4214 651635600 651635959 6.420000e-94 355.0
4 TraesCS5A01G478400 chr5A 83.554 377 37 12 3849 4214 651588650 651589012 3.890000e-86 329.0
5 TraesCS5A01G478400 chr5A 76.515 264 51 9 3921 4178 651540533 651540275 3.280000e-27 134.0
6 TraesCS5A01G478400 chr3A 96.346 903 32 1 1 903 9371277 9370376 0.000000e+00 1483.0
7 TraesCS5A01G478400 chr3A 95.050 202 9 1 702 903 194229847 194229647 3.030000e-82 316.0
8 TraesCS5A01G478400 chr5D 88.418 1226 82 27 3267 4467 23870491 23871681 0.000000e+00 1423.0
9 TraesCS5A01G478400 chr5D 85.806 1409 101 44 3267 4624 525387984 525389344 0.000000e+00 1402.0
10 TraesCS5A01G478400 chr5D 86.657 667 63 12 914 1564 525321790 525322446 0.000000e+00 715.0
11 TraesCS5A01G478400 chr5D 88.028 568 62 6 905 1469 525325619 525326183 0.000000e+00 667.0
12 TraesCS5A01G478400 chr5D 84.071 678 81 8 914 1573 23863494 23864162 3.430000e-176 628.0
13 TraesCS5A01G478400 chr5D 84.094 679 76 13 914 1573 525378522 525379187 1.230000e-175 627.0
14 TraesCS5A01G478400 chr5D 82.133 722 68 23 2448 3159 525381109 525381779 3.530000e-156 562.0
15 TraesCS5A01G478400 chr5D 84.127 567 74 9 4657 5209 525390242 525390806 7.690000e-148 534.0
16 TraesCS5A01G478400 chr5D 88.018 434 41 8 989 1421 525243283 525242860 2.170000e-138 503.0
17 TraesCS5A01G478400 chr5D 83.429 525 72 8 4657 5168 23872836 23873358 1.700000e-129 473.0
18 TraesCS5A01G478400 chr5D 84.375 384 41 10 3838 4214 525317393 525317764 4.960000e-95 359.0
19 TraesCS5A01G478400 chr5D 81.236 453 38 17 2554 2987 23869779 23870203 6.510000e-84 322.0
20 TraesCS5A01G478400 chr5D 87.018 285 29 7 1914 2197 525379619 525379896 1.090000e-81 315.0
21 TraesCS5A01G478400 chr5D 89.000 200 8 6 3037 3230 23870204 23870395 8.730000e-58 235.0
22 TraesCS5A01G478400 chr5D 86.628 172 18 5 4488 4656 23871764 23871933 8.920000e-43 185.0
23 TraesCS5A01G478400 chr5D 86.667 105 14 0 2093 2197 23867145 23867249 3.300000e-22 117.0
24 TraesCS5A01G478400 chr5D 88.608 79 6 1 2225 2303 23867397 23867472 5.560000e-15 93.5
25 TraesCS5A01G478400 chr5D 88.608 79 6 1 2225 2303 525380042 525380117 5.560000e-15 93.5
26 TraesCS5A01G478400 chr5B 87.125 1266 73 33 3267 4491 659747667 659748883 0.000000e+00 1352.0
27 TraesCS5A01G478400 chr5B 86.667 720 62 16 914 1605 659739456 659740169 0.000000e+00 767.0
28 TraesCS5A01G478400 chr5B 88.214 560 55 7 914 1472 659743542 659744091 0.000000e+00 658.0
29 TraesCS5A01G478400 chr5B 81.550 813 50 42 2448 3230 659746817 659747559 3.500000e-161 579.0
30 TraesCS5A01G478400 chr5B 87.676 284 27 5 1915 2197 659744556 659744832 1.810000e-84 324.0
31 TraesCS5A01G478400 chr5B 84.239 184 12 4 1626 1809 659744360 659744526 4.180000e-36 163.0
32 TraesCS5A01G478400 chr5B 97.727 44 1 0 3228 3271 659747578 659747621 5.600000e-10 76.8
33 TraesCS5A01G478400 chr3B 99.345 458 3 0 447 904 273749205 273749662 0.000000e+00 830.0
34 TraesCS5A01G478400 chr7A 89.389 622 63 3 288 908 37894940 37895559 0.000000e+00 780.0
35 TraesCS5A01G478400 chr7A 95.588 204 8 1 702 905 539437312 539437110 5.040000e-85 326.0
36 TraesCS5A01G478400 chr7A 94.634 205 9 2 699 903 23845017 23845219 3.030000e-82 316.0
37 TraesCS5A01G478400 chr6D 96.000 400 14 1 170 567 139364469 139364868 0.000000e+00 649.0
38 TraesCS5A01G478400 chr6D 94.805 308 14 2 597 904 139364866 139365171 3.650000e-131 479.0
39 TraesCS5A01G478400 chrUn 84.990 513 50 13 909 1405 67240667 67241168 3.630000e-136 496.0
40 TraesCS5A01G478400 chr4D 96.078 204 8 0 702 905 414345048 414344845 3.010000e-87 333.0
41 TraesCS5A01G478400 chr1D 95.588 204 9 0 702 905 38604892 38604689 1.400000e-85 327.0
42 TraesCS5A01G478400 chr2A 87.931 58 7 0 3938 3995 1365019 1364962 9.370000e-08 69.4
43 TraesCS5A01G478400 chr7D 100.000 31 0 0 2419 2449 543160678 543160648 2.030000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G478400 chr5A 651787352 651792565 5213 False 9629.000000 9629 100.000000 1 5214 1 chr5A.!!$F5 5213
1 TraesCS5A01G478400 chr3A 9370376 9371277 901 True 1483.000000 1483 96.346000 1 903 1 chr3A.!!$R1 902
2 TraesCS5A01G478400 chr5D 525387984 525390806 2822 False 968.000000 1402 84.966500 3267 5209 2 chr5D.!!$F5 1942
3 TraesCS5A01G478400 chr5D 525321790 525326183 4393 False 691.000000 715 87.342500 905 1564 2 chr5D.!!$F3 659
4 TraesCS5A01G478400 chr5D 23863494 23873358 9864 False 434.562500 1423 86.007125 914 5168 8 chr5D.!!$F2 4254
5 TraesCS5A01G478400 chr5D 525378522 525381779 3257 False 399.375000 627 85.463250 914 3159 4 chr5D.!!$F4 2245
6 TraesCS5A01G478400 chr5B 659739456 659748883 9427 False 559.971429 1352 87.599714 914 4491 7 chr5B.!!$F1 3577
7 TraesCS5A01G478400 chr7A 37894940 37895559 619 False 780.000000 780 89.389000 288 908 1 chr7A.!!$F2 620
8 TraesCS5A01G478400 chr6D 139364469 139365171 702 False 564.000000 649 95.402500 170 904 2 chr6D.!!$F1 734
9 TraesCS5A01G478400 chrUn 67240667 67241168 501 False 496.000000 496 84.990000 909 1405 1 chrUn.!!$F1 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 591 1.684248 GCTGCATCCAAGGGAATCACT 60.684 52.381 0.00 0.0 34.34 3.41 F
2143 9739 0.389426 ACGTAAGGCATGACGGTGAC 60.389 55.000 13.66 0.0 43.32 3.67 F
3462 18452 0.107945 CAAGGAAGGAAGCGAGGGAG 60.108 60.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2337 10053 0.035820 GGGTAGCAAATCCACGACCA 60.036 55.0 0.0 0.0 0.0 4.02 R
3659 18652 0.040958 GCTGTTCCTGTTGTTGCGAG 60.041 55.0 0.0 0.0 0.0 5.03 R
5122 21135 0.103026 CATGATCCGCTGAGAACCGA 59.897 55.0 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 3.004752 TGGAAAGCATAAGAAGGAGGC 57.995 47.619 0.00 0.00 0.00 4.70
155 156 2.226674 GGCTGGTAAAGAGACAAACTGC 59.773 50.000 0.00 0.00 0.00 4.40
308 309 9.563898 TGATATAGTTTACACTGTCACTAAACG 57.436 33.333 5.60 0.00 36.10 3.60
588 591 1.684248 GCTGCATCCAAGGGAATCACT 60.684 52.381 0.00 0.00 34.34 3.41
665 700 4.398358 AGAACAAGACCGATCGATTGTCTA 59.602 41.667 23.66 0.00 38.36 2.59
783 818 3.290710 ACTTGCACACAAAGGATGTTCT 58.709 40.909 0.00 0.00 41.46 3.01
877 912 1.844357 CTTCGTCCACGTAGTAATGCG 59.156 52.381 0.00 0.00 41.61 4.73
952 987 3.300857 ACAGAGCATCGATCGAATTACG 58.699 45.455 23.50 11.56 42.67 3.18
956 991 3.502920 AGCATCGATCGAATTACGGATC 58.497 45.455 23.50 3.71 42.82 3.36
1035 1076 0.472734 AGGAGGAGCCAGTTGTGTCT 60.473 55.000 0.00 0.00 40.02 3.41
1062 1103 2.673341 TCGCTCAGCACGGACTCT 60.673 61.111 0.00 0.00 0.00 3.24
1063 1104 2.202544 CGCTCAGCACGGACTCTC 60.203 66.667 0.00 0.00 0.00 3.20
1076 1117 1.968703 GACTCTCCGACGACGTCCAG 61.969 65.000 21.63 16.92 37.88 3.86
1103 1153 2.732658 GGACAACTCGACCGGTGT 59.267 61.111 14.63 0.95 0.00 4.16
1104 1154 1.372623 GGACAACTCGACCGGTGTC 60.373 63.158 14.63 12.41 38.18 3.67
1150 1203 3.637273 GGCGGGGGAGAGTTGTGT 61.637 66.667 0.00 0.00 0.00 3.72
1158 1211 0.674534 GGAGAGTTGTGTCCACGTCT 59.325 55.000 0.00 0.00 36.08 4.18
1239 1292 4.101448 GAGCACCGGACCAGCCAT 62.101 66.667 9.46 0.00 35.94 4.40
1315 1368 4.475135 GGAAGCGGCAGGAGGACC 62.475 72.222 1.45 0.00 0.00 4.46
1362 1415 4.821589 GGCTTCGAGACGGGCCAG 62.822 72.222 4.39 1.85 42.10 4.85
1408 1461 4.593864 GCGAGGAGATGGCGGTCC 62.594 72.222 0.00 0.00 0.00 4.46
1468 1521 2.366167 AGGAGGCTAGGCACCAGG 60.366 66.667 29.74 0.00 0.00 4.45
1472 1525 4.162690 GGCTAGGCACCAGGACGG 62.163 72.222 12.16 0.00 42.50 4.79
1491 1559 1.905922 GCGTCTTGCTGGAGCTGTTC 61.906 60.000 0.00 0.00 42.66 3.18
1492 1560 1.621301 CGTCTTGCTGGAGCTGTTCG 61.621 60.000 0.00 0.00 42.66 3.95
1501 1569 3.732471 GCTGGAGCTGTTCGTCTAGTTAG 60.732 52.174 0.00 0.00 38.21 2.34
1511 1579 3.992643 TCGTCTAGTTAGCTAGCTCGAT 58.007 45.455 23.26 10.57 43.30 3.59
1539 1607 4.905429 TGCTTGCTAATTCAGGACTTGTA 58.095 39.130 0.00 0.00 0.00 2.41
1542 1610 5.163814 GCTTGCTAATTCAGGACTTGTACAG 60.164 44.000 0.00 0.00 0.00 2.74
1584 1799 7.359264 CGTTAGGTTAGTTGTGTCTTCAGAATG 60.359 40.741 0.00 0.00 37.54 2.67
1603 1899 6.925718 CAGAATGAGATAGCTTAATTGTCCGA 59.074 38.462 0.00 0.00 39.69 4.55
1610 1906 3.448686 AGCTTAATTGTCCGATCGACTG 58.551 45.455 18.66 0.00 42.49 3.51
1615 1911 1.320344 TTGTCCGATCGACTGGGGAG 61.320 60.000 18.66 0.00 42.49 4.30
1617 1913 0.465097 GTCCGATCGACTGGGGAGTA 60.465 60.000 18.66 0.00 38.57 2.59
1618 1914 0.477204 TCCGATCGACTGGGGAGTAT 59.523 55.000 18.66 0.00 0.00 2.12
1619 1915 1.701292 TCCGATCGACTGGGGAGTATA 59.299 52.381 18.66 0.00 0.00 1.47
1622 2025 3.307269 CCGATCGACTGGGGAGTATAGTA 60.307 52.174 18.66 0.00 0.00 1.82
1626 2029 7.440198 CGATCGACTGGGGAGTATAGTATATA 58.560 42.308 10.26 0.00 0.00 0.86
1638 2041 7.226128 GGAGTATAGTATATATTTTTGCGGGGC 59.774 40.741 0.00 0.00 0.00 5.80
1642 2045 4.705023 AGTATATATTTTTGCGGGGCCATC 59.295 41.667 4.39 0.00 0.00 3.51
1658 2061 4.940046 GGGCCATCTTGTATATGATCACAG 59.060 45.833 4.39 0.00 0.00 3.66
1673 2076 4.756642 TGATCACAGTTCACAAGTCCAATC 59.243 41.667 0.00 0.00 0.00 2.67
1675 2078 3.118075 TCACAGTTCACAAGTCCAATCCA 60.118 43.478 0.00 0.00 0.00 3.41
1677 2080 3.136443 ACAGTTCACAAGTCCAATCCAGA 59.864 43.478 0.00 0.00 0.00 3.86
1691 2094 5.885912 TCCAATCCAGAGCCTAAATTTGTAC 59.114 40.000 0.00 0.00 0.00 2.90
1692 2095 5.888161 CCAATCCAGAGCCTAAATTTGTACT 59.112 40.000 0.00 0.00 0.00 2.73
1693 2096 6.038714 CCAATCCAGAGCCTAAATTTGTACTC 59.961 42.308 0.00 4.68 0.00 2.59
1694 2097 5.099042 TCCAGAGCCTAAATTTGTACTCC 57.901 43.478 0.00 0.00 0.00 3.85
1715 5853 7.486647 ACTCCAAATTCTGCAATATAAAGCTG 58.513 34.615 0.00 1.90 0.00 4.24
1720 5858 5.920193 TTCTGCAATATAAAGCTGCCTTT 57.080 34.783 0.00 0.00 43.43 3.11
1739 5877 5.004535 GCCTTTACAACTTAAGATCGTCGAG 59.995 44.000 10.09 4.86 0.00 4.04
1770 5914 5.710984 CAGTATACTGGTGTCCGGAATATC 58.289 45.833 22.95 0.00 40.20 1.63
1801 5946 4.537751 TGAGATCTAGAAACCACGATCCT 58.462 43.478 0.00 0.00 34.30 3.24
1802 5947 5.691896 TGAGATCTAGAAACCACGATCCTA 58.308 41.667 0.00 0.00 34.30 2.94
1803 5948 5.531659 TGAGATCTAGAAACCACGATCCTAC 59.468 44.000 0.00 0.00 34.30 3.18
1804 5949 5.697067 AGATCTAGAAACCACGATCCTACT 58.303 41.667 0.00 0.00 34.30 2.57
1805 5950 5.766174 AGATCTAGAAACCACGATCCTACTC 59.234 44.000 0.00 0.00 34.30 2.59
1806 5951 4.205587 TCTAGAAACCACGATCCTACTCC 58.794 47.826 0.00 0.00 0.00 3.85
1807 5952 2.108970 AGAAACCACGATCCTACTCCC 58.891 52.381 0.00 0.00 0.00 4.30
1808 5953 2.108970 GAAACCACGATCCTACTCCCT 58.891 52.381 0.00 0.00 0.00 4.20
1809 5954 1.777941 AACCACGATCCTACTCCCTC 58.222 55.000 0.00 0.00 0.00 4.30
1810 5955 0.465824 ACCACGATCCTACTCCCTCG 60.466 60.000 0.00 0.00 37.17 4.63
1811 5956 1.655329 CACGATCCTACTCCCTCGC 59.345 63.158 0.00 0.00 34.60 5.03
1812 5957 1.101635 CACGATCCTACTCCCTCGCA 61.102 60.000 0.00 0.00 34.60 5.10
1813 5958 0.395311 ACGATCCTACTCCCTCGCAA 60.395 55.000 0.00 0.00 34.60 4.85
1814 5959 0.744874 CGATCCTACTCCCTCGCAAA 59.255 55.000 0.00 0.00 0.00 3.68
1815 5960 1.136305 CGATCCTACTCCCTCGCAAAA 59.864 52.381 0.00 0.00 0.00 2.44
1816 5961 2.418197 CGATCCTACTCCCTCGCAAAAA 60.418 50.000 0.00 0.00 0.00 1.94
1861 6006 7.039882 CACGATCCTACTACCTGTGTTTTATT 58.960 38.462 0.00 0.00 0.00 1.40
1866 6012 5.063060 CCTACTACCTGTGTTTTATTCGTGC 59.937 44.000 0.00 0.00 0.00 5.34
1869 6015 2.812011 ACCTGTGTTTTATTCGTGCTCC 59.188 45.455 0.00 0.00 0.00 4.70
1870 6016 2.811431 CCTGTGTTTTATTCGTGCTCCA 59.189 45.455 0.00 0.00 0.00 3.86
1878 6024 1.645034 ATTCGTGCTCCATCTGTTCG 58.355 50.000 0.00 0.00 0.00 3.95
1882 6028 1.798223 CGTGCTCCATCTGTTCGAAAA 59.202 47.619 0.00 0.00 0.00 2.29
1883 6029 2.159787 CGTGCTCCATCTGTTCGAAAAG 60.160 50.000 9.21 9.21 0.00 2.27
1884 6030 3.067106 GTGCTCCATCTGTTCGAAAAGA 58.933 45.455 20.11 20.11 0.00 2.52
1885 6031 3.124297 GTGCTCCATCTGTTCGAAAAGAG 59.876 47.826 22.03 13.94 0.00 2.85
1886 6032 2.675348 GCTCCATCTGTTCGAAAAGAGG 59.325 50.000 22.03 21.30 0.00 3.69
1887 6033 3.866449 GCTCCATCTGTTCGAAAAGAGGT 60.866 47.826 24.23 7.36 0.00 3.85
1888 6034 3.664107 TCCATCTGTTCGAAAAGAGGTG 58.336 45.455 24.23 17.46 36.80 4.00
1889 6035 2.160417 CCATCTGTTCGAAAAGAGGTGC 59.840 50.000 24.23 0.63 35.95 5.01
1890 6036 1.878953 TCTGTTCGAAAAGAGGTGCC 58.121 50.000 14.22 0.00 0.00 5.01
1891 6037 1.140052 TCTGTTCGAAAAGAGGTGCCA 59.860 47.619 14.22 0.00 0.00 4.92
1892 6038 2.154462 CTGTTCGAAAAGAGGTGCCAT 58.846 47.619 9.96 0.00 0.00 4.40
1893 6039 3.007506 TCTGTTCGAAAAGAGGTGCCATA 59.992 43.478 14.22 0.00 0.00 2.74
1894 6040 3.071479 TGTTCGAAAAGAGGTGCCATAC 58.929 45.455 0.00 0.00 0.00 2.39
1905 6051 3.372660 GGTGCCATACCGTTTCAAAAA 57.627 42.857 0.00 0.00 40.26 1.94
1940 6086 6.462500 ACAGCTGCAATAAGTCTATATCCTG 58.538 40.000 15.27 0.00 0.00 3.86
1942 6088 6.589523 CAGCTGCAATAAGTCTATATCCTGAC 59.410 42.308 0.00 0.00 0.00 3.51
1956 6102 1.541588 TCCTGACAGAGTGACACATCG 59.458 52.381 8.59 0.00 0.00 3.84
1957 6103 1.541588 CCTGACAGAGTGACACATCGA 59.458 52.381 8.59 0.00 0.00 3.59
1977 6123 5.555966 TCGAGAGAGATATGAGCACACTAT 58.444 41.667 0.00 0.00 34.84 2.12
1984 6130 7.559486 AGAGATATGAGCACACTATTGACAAA 58.441 34.615 0.00 0.00 0.00 2.83
2013 6160 5.308825 ACATTGTACAAGTGGAGAAGGAAG 58.691 41.667 14.65 0.00 0.00 3.46
2021 6168 4.817318 AGTGGAGAAGGAAGTGAGAATC 57.183 45.455 0.00 0.00 0.00 2.52
2025 6172 3.697045 GGAGAAGGAAGTGAGAATCGAGA 59.303 47.826 0.00 0.00 38.61 4.04
2045 6192 9.729023 ATCGAGAAAGATGCTATAAATATCGAG 57.271 33.333 0.00 0.00 37.66 4.04
2102 9698 6.321435 TGTTTATCTGATCGATACACTCCACT 59.679 38.462 17.05 0.00 36.62 4.00
2104 9700 3.215151 TCTGATCGATACACTCCACTCC 58.785 50.000 0.00 0.00 0.00 3.85
2118 9714 3.173151 TCCACTCCAGAAAGCAGACATA 58.827 45.455 0.00 0.00 0.00 2.29
2120 9716 3.055530 CCACTCCAGAAAGCAGACATAGT 60.056 47.826 0.00 0.00 0.00 2.12
2125 9721 6.651225 ACTCCAGAAAGCAGACATAGTTAAAC 59.349 38.462 0.00 0.00 0.00 2.01
2126 9722 5.637810 TCCAGAAAGCAGACATAGTTAAACG 59.362 40.000 0.00 0.00 0.00 3.60
2143 9739 0.389426 ACGTAAGGCATGACGGTGAC 60.389 55.000 13.66 0.00 43.32 3.67
2146 9742 2.794981 CGTAAGGCATGACGGTGACTAG 60.795 54.545 0.00 0.00 36.11 2.57
2149 9745 2.025155 AGGCATGACGGTGACTAGTAG 58.975 52.381 0.00 0.00 35.12 2.57
2156 9752 6.613233 CATGACGGTGACTAGTAGGAATATC 58.387 44.000 0.00 0.00 0.00 1.63
2161 9757 5.009710 CGGTGACTAGTAGGAATATCAAGCA 59.990 44.000 0.00 0.00 0.00 3.91
2192 9788 6.335777 ACCGATCACAATACTTAACACCTAC 58.664 40.000 0.00 0.00 0.00 3.18
2201 9797 9.525409 ACAATACTTAACACCTACTAATAAGCG 57.475 33.333 0.00 0.00 0.00 4.68
2203 9799 9.741647 AATACTTAACACCTACTAATAAGCGAC 57.258 33.333 0.00 0.00 0.00 5.19
2204 9800 7.161773 ACTTAACACCTACTAATAAGCGACA 57.838 36.000 0.00 0.00 0.00 4.35
2208 9804 7.916914 AACACCTACTAATAAGCGACATTTT 57.083 32.000 0.00 0.00 0.00 1.82
2209 9805 7.535489 ACACCTACTAATAAGCGACATTTTC 57.465 36.000 0.00 0.00 0.00 2.29
2210 9806 7.101054 ACACCTACTAATAAGCGACATTTTCA 58.899 34.615 0.00 0.00 0.00 2.69
2213 9809 8.204836 ACCTACTAATAAGCGACATTTTCAGAT 58.795 33.333 0.00 0.00 0.00 2.90
2214 9810 8.704234 CCTACTAATAAGCGACATTTTCAGATC 58.296 37.037 0.00 0.00 0.00 2.75
2215 9811 9.249457 CTACTAATAAGCGACATTTTCAGATCA 57.751 33.333 0.00 0.00 0.00 2.92
2216 9812 8.136057 ACTAATAAGCGACATTTTCAGATCAG 57.864 34.615 0.00 0.00 0.00 2.90
2218 9814 7.798596 AATAAGCGACATTTTCAGATCAGAT 57.201 32.000 0.00 0.00 0.00 2.90
2219 9815 7.798596 ATAAGCGACATTTTCAGATCAGATT 57.201 32.000 0.00 0.00 0.00 2.40
2220 9816 6.506500 AAGCGACATTTTCAGATCAGATTT 57.493 33.333 0.00 0.00 0.00 2.17
2222 9818 7.798596 AGCGACATTTTCAGATCAGATTTAT 57.201 32.000 0.00 0.00 0.00 1.40
2265 9981 6.707440 TTTTATGCTTCAACCAGACAAGAA 57.293 33.333 0.00 0.00 0.00 2.52
2268 9984 7.615582 TTATGCTTCAACCAGACAAGAATAG 57.384 36.000 0.00 0.00 0.00 1.73
2269 9985 3.753272 TGCTTCAACCAGACAAGAATAGC 59.247 43.478 0.00 0.00 0.00 2.97
2270 9986 4.006319 GCTTCAACCAGACAAGAATAGCT 58.994 43.478 0.00 0.00 0.00 3.32
2281 9997 7.362401 CCAGACAAGAATAGCTAGCAACATTTT 60.362 37.037 18.83 5.79 0.00 1.82
2288 10004 8.345565 AGAATAGCTAGCAACATTTTAAATCCG 58.654 33.333 18.83 0.00 0.00 4.18
2291 10007 7.568199 AGCTAGCAACATTTTAAATCCGTAT 57.432 32.000 18.83 0.00 0.00 3.06
2308 10024 9.550811 AAATCCGTATTTTTGAAATCGTTAGAC 57.449 29.630 0.00 0.00 30.98 2.59
2311 10027 8.723311 TCCGTATTTTTGAAATCGTTAGACAAT 58.277 29.630 0.00 0.00 0.00 2.71
2350 10066 9.435688 TCAATATATAAGATGGTCGTGGATTTG 57.564 33.333 0.00 0.00 0.00 2.32
2353 10069 3.627395 AAGATGGTCGTGGATTTGCTA 57.373 42.857 0.00 0.00 0.00 3.49
2358 10074 1.084289 GTCGTGGATTTGCTACCCAC 58.916 55.000 0.00 0.00 45.07 4.61
2361 10077 0.811281 GTGGATTTGCTACCCACTGC 59.189 55.000 10.31 0.00 45.08 4.40
2365 10081 0.324943 ATTTGCTACCCACTGCGAGT 59.675 50.000 0.00 0.00 0.00 4.18
2401 10117 4.018141 TCCATGTCCAGGATGAGAAACAAT 60.018 41.667 0.00 0.00 39.69 2.71
2407 10123 7.629157 TGTCCAGGATGAGAAACAATTATGTA 58.371 34.615 0.00 0.00 37.15 2.29
2408 10124 8.106462 TGTCCAGGATGAGAAACAATTATGTAA 58.894 33.333 0.00 0.00 37.15 2.41
2409 10125 9.125026 GTCCAGGATGAGAAACAATTATGTAAT 57.875 33.333 0.00 0.00 37.15 1.89
2429 10145 9.638239 ATGTAATTTGAATGTAAACCATGACAC 57.362 29.630 0.00 0.00 32.82 3.67
2430 10146 8.855110 TGTAATTTGAATGTAAACCATGACACT 58.145 29.630 0.00 0.00 32.82 3.55
2431 10147 9.691362 GTAATTTGAATGTAAACCATGACACTT 57.309 29.630 0.00 0.00 32.82 3.16
2438 10154 9.139174 GAATGTAAACCATGACACTTATTTTGG 57.861 33.333 0.00 0.00 32.82 3.28
2439 10155 7.825331 TGTAAACCATGACACTTATTTTGGA 57.175 32.000 0.00 0.00 0.00 3.53
2440 10156 8.239038 TGTAAACCATGACACTTATTTTGGAA 57.761 30.769 0.00 0.00 0.00 3.53
2443 10159 6.284891 ACCATGACACTTATTTTGGAATGG 57.715 37.500 0.00 0.00 37.21 3.16
2444 10160 6.015918 ACCATGACACTTATTTTGGAATGGA 58.984 36.000 4.94 0.00 35.84 3.41
2446 10162 6.982141 CCATGACACTTATTTTGGAATGGATG 59.018 38.462 0.00 0.00 34.95 3.51
2458 11053 3.759618 TGGAATGGATGGAACGGTTTAAC 59.240 43.478 0.00 0.00 0.00 2.01
2461 11056 5.065602 GGAATGGATGGAACGGTTTAACTAC 59.934 44.000 0.00 0.00 0.00 2.73
2462 11057 3.941573 TGGATGGAACGGTTTAACTACC 58.058 45.455 0.00 0.00 34.72 3.18
2466 11063 5.337491 GGATGGAACGGTTTAACTACCACTA 60.337 44.000 0.00 0.00 38.12 2.74
2472 11069 7.804600 GGAACGGTTTAACTACCACTAAAATTG 59.195 37.037 0.00 0.00 38.12 2.32
2529 11129 0.464554 GGCTAGTGGGATGCCTTCAC 60.465 60.000 4.35 0.00 43.05 3.18
2533 11133 2.040544 GTGGGATGCCTTCACGTGG 61.041 63.158 17.00 0.00 0.00 4.94
2538 11138 1.200020 GGATGCCTTCACGTGGAAAAG 59.800 52.381 17.00 11.89 34.44 2.27
2624 12435 0.592637 TGTGCCTTTTGTCTGCATCG 59.407 50.000 0.00 0.00 37.34 3.84
2645 12456 3.425492 CGATCGATCGTGTGATAGATGCT 60.425 47.826 33.95 0.00 44.07 3.79
2647 12458 3.890128 TCGATCGTGTGATAGATGCTTC 58.110 45.455 15.94 0.00 34.09 3.86
2648 12459 3.315191 TCGATCGTGTGATAGATGCTTCA 59.685 43.478 15.94 0.00 34.09 3.02
2649 12460 4.022849 TCGATCGTGTGATAGATGCTTCAT 60.023 41.667 15.94 0.00 34.09 2.57
2650 12461 4.089636 CGATCGTGTGATAGATGCTTCATG 59.910 45.833 7.03 0.00 34.09 3.07
2651 12462 4.391405 TCGTGTGATAGATGCTTCATGT 57.609 40.909 2.07 0.00 0.00 3.21
2652 12463 4.758688 TCGTGTGATAGATGCTTCATGTT 58.241 39.130 2.07 0.00 0.00 2.71
2653 12464 4.567959 TCGTGTGATAGATGCTTCATGTTG 59.432 41.667 2.07 0.00 0.00 3.33
2654 12465 4.595116 GTGTGATAGATGCTTCATGTTGC 58.405 43.478 2.07 0.00 0.00 4.17
2656 12467 4.573607 TGTGATAGATGCTTCATGTTGCTC 59.426 41.667 12.28 8.29 0.00 4.26
2657 12468 4.573607 GTGATAGATGCTTCATGTTGCTCA 59.426 41.667 12.28 6.08 0.00 4.26
2671 12485 1.226888 GCTCACCCGACGTATGTCC 60.227 63.158 9.51 0.00 42.37 4.02
2711 12525 1.593787 CTGACCGGTGAGACATGCT 59.406 57.895 17.03 0.00 0.00 3.79
2721 12540 2.095869 GTGAGACATGCTGTTGCTTCTG 60.096 50.000 0.00 0.00 40.48 3.02
2737 12556 3.106609 TGGGCAAGTTGGGTGGGA 61.107 61.111 4.75 0.00 0.00 4.37
2740 12559 1.257750 GGGCAAGTTGGGTGGGAATC 61.258 60.000 4.75 0.00 0.00 2.52
2741 12560 1.595093 GGCAAGTTGGGTGGGAATCG 61.595 60.000 4.75 0.00 0.00 3.34
2742 12561 0.608035 GCAAGTTGGGTGGGAATCGA 60.608 55.000 4.75 0.00 0.00 3.59
2743 12562 1.165270 CAAGTTGGGTGGGAATCGAC 58.835 55.000 0.00 0.00 0.00 4.20
2765 12584 3.489731 CGTCCTCGCTACCACGTA 58.510 61.111 0.00 0.00 0.00 3.57
2797 12616 5.437289 AGAGATCATCTGAACTGACGATC 57.563 43.478 0.00 8.80 36.69 3.69
2802 12621 3.627577 TCATCTGAACTGACGATCGATGA 59.372 43.478 24.34 13.68 35.41 2.92
2804 12623 2.115595 CTGAACTGACGATCGATGAGC 58.884 52.381 24.34 6.88 0.00 4.26
2823 12642 1.652124 GCTGTGTACGTACGTCAATGG 59.348 52.381 26.53 14.26 0.00 3.16
2828 12647 1.391144 GTACGTACGTCAATGGGCAAC 59.609 52.381 26.53 10.34 0.00 4.17
2833 12652 0.521291 ACGTCAATGGGCAACGAATG 59.479 50.000 0.71 0.00 39.59 2.67
2843 12662 3.259876 TGGGCAACGAATGTCTTACTAGT 59.740 43.478 0.00 0.00 32.85 2.57
2845 12664 5.041940 GGGCAACGAATGTCTTACTAGTAG 58.958 45.833 2.23 0.00 32.85 2.57
2846 12665 5.393896 GGGCAACGAATGTCTTACTAGTAGT 60.394 44.000 8.14 8.14 32.85 2.73
2849 12668 7.590689 GGCAACGAATGTCTTACTAGTAGTATC 59.409 40.741 10.82 3.97 29.64 2.24
2850 12669 8.127327 GCAACGAATGTCTTACTAGTAGTATCA 58.873 37.037 10.82 10.67 29.64 2.15
2858 12677 9.775854 TGTCTTACTAGTAGTATCATACCTGTC 57.224 37.037 10.82 0.00 29.64 3.51
2902 12721 6.670464 TGTAAGTACCATACCTGATCCTCAAA 59.330 38.462 4.49 0.00 0.00 2.69
2904 12723 5.990668 AGTACCATACCTGATCCTCAAAAC 58.009 41.667 0.00 0.00 0.00 2.43
2961 12783 4.695217 AACCTTAATTACATGCACACGG 57.305 40.909 0.00 0.00 0.00 4.94
2991 12813 4.589700 CACACGTGCACGCACCAC 62.590 66.667 37.35 0.00 43.49 4.16
2992 12814 4.830765 ACACGTGCACGCACCACT 62.831 61.111 37.35 15.76 43.49 4.00
2993 12815 3.572539 CACGTGCACGCACCACTT 61.573 61.111 37.35 14.96 43.49 3.16
2994 12816 2.822255 ACGTGCACGCACCACTTT 60.822 55.556 37.35 14.16 43.49 2.66
2995 12817 2.052237 CGTGCACGCACCACTTTC 60.052 61.111 28.16 0.00 43.49 2.62
2996 12818 2.331451 GTGCACGCACCACTTTCC 59.669 61.111 11.13 0.00 40.79 3.13
2997 12819 2.186826 GTGCACGCACCACTTTCCT 61.187 57.895 11.13 0.00 40.79 3.36
2998 12820 2.186160 TGCACGCACCACTTTCCTG 61.186 57.895 0.00 0.00 0.00 3.86
3000 12822 1.227823 CACGCACCACTTTCCTGGA 60.228 57.895 0.00 0.00 35.04 3.86
3001 12823 0.606401 CACGCACCACTTTCCTGGAT 60.606 55.000 0.00 0.00 35.04 3.41
3002 12824 0.606401 ACGCACCACTTTCCTGGATG 60.606 55.000 0.00 0.00 35.04 3.51
3003 12825 0.606401 CGCACCACTTTCCTGGATGT 60.606 55.000 0.00 0.00 35.04 3.06
3004 12826 1.620822 GCACCACTTTCCTGGATGTT 58.379 50.000 0.00 0.00 35.04 2.71
3005 12827 1.963515 GCACCACTTTCCTGGATGTTT 59.036 47.619 0.00 0.00 35.04 2.83
3006 12828 3.153919 GCACCACTTTCCTGGATGTTTA 58.846 45.455 0.00 0.00 35.04 2.01
3007 12829 3.057526 GCACCACTTTCCTGGATGTTTAC 60.058 47.826 0.00 0.00 35.04 2.01
3008 12830 4.141287 CACCACTTTCCTGGATGTTTACA 58.859 43.478 0.00 0.00 35.04 2.41
3009 12831 4.582656 CACCACTTTCCTGGATGTTTACAA 59.417 41.667 0.00 0.00 35.04 2.41
3010 12832 4.827284 ACCACTTTCCTGGATGTTTACAAG 59.173 41.667 0.00 0.00 35.04 3.16
3011 12833 5.070001 CCACTTTCCTGGATGTTTACAAGA 58.930 41.667 8.59 0.00 32.30 3.02
3012 12834 5.534654 CCACTTTCCTGGATGTTTACAAGAA 59.465 40.000 8.59 0.00 32.30 2.52
3013 12835 6.209391 CCACTTTCCTGGATGTTTACAAGAAT 59.791 38.462 8.59 0.00 32.30 2.40
3014 12836 7.086376 CACTTTCCTGGATGTTTACAAGAATG 58.914 38.462 8.59 0.00 0.00 2.67
3015 12837 7.004086 ACTTTCCTGGATGTTTACAAGAATGA 58.996 34.615 8.59 0.00 0.00 2.57
3016 12838 7.505585 ACTTTCCTGGATGTTTACAAGAATGAA 59.494 33.333 8.59 0.00 0.00 2.57
3017 12839 6.817765 TCCTGGATGTTTACAAGAATGAAC 57.182 37.500 0.00 0.00 0.00 3.18
3018 12840 5.411361 TCCTGGATGTTTACAAGAATGAACG 59.589 40.000 0.00 0.00 0.00 3.95
3019 12841 5.411361 CCTGGATGTTTACAAGAATGAACGA 59.589 40.000 0.00 0.00 0.00 3.85
3020 12842 6.072728 CCTGGATGTTTACAAGAATGAACGAA 60.073 38.462 0.00 0.00 0.00 3.85
3021 12843 7.362056 CCTGGATGTTTACAAGAATGAACGAAT 60.362 37.037 0.00 0.00 0.00 3.34
3022 12844 7.304735 TGGATGTTTACAAGAATGAACGAATG 58.695 34.615 0.00 0.00 0.00 2.67
3023 12845 7.174080 TGGATGTTTACAAGAATGAACGAATGA 59.826 33.333 0.00 0.00 0.00 2.57
3024 12846 8.020819 GGATGTTTACAAGAATGAACGAATGAA 58.979 33.333 0.00 0.00 0.00 2.57
3025 12847 9.559958 GATGTTTACAAGAATGAACGAATGAAT 57.440 29.630 0.00 0.00 0.00 2.57
3026 12848 8.726650 TGTTTACAAGAATGAACGAATGAATG 57.273 30.769 0.00 0.00 0.00 2.67
3027 12849 8.563732 TGTTTACAAGAATGAACGAATGAATGA 58.436 29.630 0.00 0.00 0.00 2.57
3028 12850 9.393249 GTTTACAAGAATGAACGAATGAATGAA 57.607 29.630 0.00 0.00 0.00 2.57
3030 12852 9.558648 TTACAAGAATGAACGAATGAATGAATG 57.441 29.630 0.00 0.00 0.00 2.67
3031 12853 6.529125 ACAAGAATGAACGAATGAATGAATGC 59.471 34.615 0.00 0.00 0.00 3.56
3032 12854 6.198650 AGAATGAACGAATGAATGAATGCA 57.801 33.333 0.00 0.00 0.00 3.96
3033 12855 6.263344 AGAATGAACGAATGAATGAATGCAG 58.737 36.000 0.00 0.00 0.00 4.41
3034 12856 5.823209 ATGAACGAATGAATGAATGCAGA 57.177 34.783 0.00 0.00 0.00 4.26
3035 12857 5.625921 TGAACGAATGAATGAATGCAGAA 57.374 34.783 0.00 0.00 0.00 3.02
3099 12921 5.382303 CAAGACATACAAGTAAACAAGCCG 58.618 41.667 0.00 0.00 0.00 5.52
3103 12925 2.228138 ACAAGTAAACAAGCCGACGA 57.772 45.000 0.00 0.00 0.00 4.20
3106 12928 0.390124 AGTAAACAAGCCGACGACCA 59.610 50.000 0.00 0.00 0.00 4.02
3107 12929 1.202557 AGTAAACAAGCCGACGACCAA 60.203 47.619 0.00 0.00 0.00 3.67
3109 12931 1.782028 AAACAAGCCGACGACCAAGC 61.782 55.000 0.00 0.00 0.00 4.01
3110 12932 3.423154 CAAGCCGACGACCAAGCC 61.423 66.667 0.00 0.00 0.00 4.35
3111 12933 3.936203 AAGCCGACGACCAAGCCA 61.936 61.111 0.00 0.00 0.00 4.75
3112 12934 3.254024 AAGCCGACGACCAAGCCAT 62.254 57.895 0.00 0.00 0.00 4.40
3113 12935 2.746277 GCCGACGACCAAGCCATT 60.746 61.111 0.00 0.00 0.00 3.16
3114 12936 3.039202 GCCGACGACCAAGCCATTG 62.039 63.158 0.00 0.00 36.09 2.82
3115 12937 2.480555 CGACGACCAAGCCATTGC 59.519 61.111 0.00 0.00 34.91 3.56
3195 13019 4.872124 GGTAAGGTTGGACCGTTTATACAG 59.128 45.833 0.00 0.00 44.90 2.74
3196 13020 4.628963 AAGGTTGGACCGTTTATACAGT 57.371 40.909 0.00 0.00 44.90 3.55
3197 13021 5.743636 AAGGTTGGACCGTTTATACAGTA 57.256 39.130 0.00 0.00 44.90 2.74
3221 13048 2.292794 TAGTCTGGTTCGCGATGCCC 62.293 60.000 22.17 17.20 0.00 5.36
3226 13053 2.715624 GTTCGCGATGCCCATTCC 59.284 61.111 10.88 0.00 0.00 3.01
3235 13083 1.987807 ATGCCCATTCCCGTCTCCTG 61.988 60.000 0.00 0.00 0.00 3.86
3271 13119 3.781162 GCACGTACGTTTCCCCGC 61.781 66.667 20.23 14.28 0.00 6.13
3272 13120 2.356075 CACGTACGTTTCCCCGCA 60.356 61.111 20.23 0.00 0.00 5.69
3273 13121 2.356194 ACGTACGTTTCCCCGCAC 60.356 61.111 16.72 0.00 0.00 5.34
3299 18261 1.604693 CCAACGTACGCCTTGTCTCTT 60.605 52.381 16.72 0.00 0.00 2.85
3462 18452 0.107945 CAAGGAAGGAAGCGAGGGAG 60.108 60.000 0.00 0.00 0.00 4.30
3600 18593 1.889530 CGCCTTCCTCTTTCCCGTCT 61.890 60.000 0.00 0.00 0.00 4.18
3601 18594 0.108089 GCCTTCCTCTTTCCCGTCTC 60.108 60.000 0.00 0.00 0.00 3.36
3602 18595 1.562783 CCTTCCTCTTTCCCGTCTCT 58.437 55.000 0.00 0.00 0.00 3.10
3603 18596 1.478916 CCTTCCTCTTTCCCGTCTCTC 59.521 57.143 0.00 0.00 0.00 3.20
3619 18612 4.512198 CGTCTCTCCAGGCCGTATATATAG 59.488 50.000 0.00 0.00 0.00 1.31
3628 18621 2.098607 GCCGTATATATAGAGCCGCACA 59.901 50.000 0.00 0.00 0.00 4.57
3634 18627 2.011741 TATAGAGCCGCACACACCCG 62.012 60.000 0.00 0.00 0.00 5.28
3643 18636 1.452289 CACACACCCGACCCAAACA 60.452 57.895 0.00 0.00 0.00 2.83
3659 18652 2.497107 AACACAACAGCATCACAAGC 57.503 45.000 0.00 0.00 0.00 4.01
3688 18681 2.674380 GGAACAGCCAGCCACCTG 60.674 66.667 0.00 0.00 38.85 4.00
3698 18720 2.047274 GCCACCTGCGCTTCTACA 60.047 61.111 9.73 0.00 0.00 2.74
3699 18721 2.391389 GCCACCTGCGCTTCTACAC 61.391 63.158 9.73 0.00 0.00 2.90
3700 18722 1.741770 CCACCTGCGCTTCTACACC 60.742 63.158 9.73 0.00 0.00 4.16
3701 18723 1.293498 CACCTGCGCTTCTACACCT 59.707 57.895 9.73 0.00 0.00 4.00
3702 18724 0.320771 CACCTGCGCTTCTACACCTT 60.321 55.000 9.73 0.00 0.00 3.50
3703 18725 0.037232 ACCTGCGCTTCTACACCTTC 60.037 55.000 9.73 0.00 0.00 3.46
3704 18726 0.741221 CCTGCGCTTCTACACCTTCC 60.741 60.000 9.73 0.00 0.00 3.46
3705 18727 1.078759 CTGCGCTTCTACACCTTCCG 61.079 60.000 9.73 0.00 0.00 4.30
3706 18728 1.810030 GCGCTTCTACACCTTCCGG 60.810 63.158 0.00 0.00 0.00 5.14
3715 18737 1.048601 ACACCTTCCGGCGATCATAT 58.951 50.000 9.30 0.00 0.00 1.78
3760 18782 2.125202 CTCGCCGGTTGGTTTGGTTC 62.125 60.000 1.90 0.00 37.67 3.62
3856 18878 1.891919 CCTCTCCCTCTCGCTCTCG 60.892 68.421 0.00 0.00 0.00 4.04
3860 18882 2.515991 CCCTCTCGCTCTCGCTCT 60.516 66.667 0.00 0.00 35.26 4.09
3861 18883 2.542907 CCCTCTCGCTCTCGCTCTC 61.543 68.421 0.00 0.00 35.26 3.20
3862 18884 2.542907 CCTCTCGCTCTCGCTCTCC 61.543 68.421 0.00 0.00 35.26 3.71
3863 18885 2.515057 TCTCGCTCTCGCTCTCCC 60.515 66.667 0.00 0.00 35.26 4.30
3864 18886 2.515991 CTCGCTCTCGCTCTCCCT 60.516 66.667 0.00 0.00 35.26 4.20
3865 18887 2.515057 TCGCTCTCGCTCTCCCTC 60.515 66.667 0.00 0.00 35.26 4.30
4218 19243 2.455032 CGAGCTGTTCGTCTAGATTGG 58.545 52.381 5.71 0.00 44.27 3.16
4230 19259 6.884832 TCGTCTAGATTGGTGAATGGTTAAT 58.115 36.000 0.00 0.00 0.00 1.40
4232 19264 8.479689 TCGTCTAGATTGGTGAATGGTTAATTA 58.520 33.333 0.00 0.00 0.00 1.40
4233 19265 8.765219 CGTCTAGATTGGTGAATGGTTAATTAG 58.235 37.037 0.00 0.00 0.00 1.73
4261 19293 8.958506 GTTCTACTAGGACAGAGTTCTTGATTA 58.041 37.037 0.00 0.00 0.00 1.75
4264 19296 7.540474 ACTAGGACAGAGTTCTTGATTAACA 57.460 36.000 0.00 0.00 0.00 2.41
4265 19297 8.140112 ACTAGGACAGAGTTCTTGATTAACAT 57.860 34.615 0.00 0.00 0.00 2.71
4274 19306 8.150945 AGAGTTCTTGATTAACATGTGTAGTGT 58.849 33.333 0.00 0.00 0.00 3.55
4299 19331 1.598601 ACGCGATTGGTTTGTACGTTT 59.401 42.857 15.93 0.00 0.00 3.60
4326 19358 1.795889 GCAGACACACTCGTAGCTAGC 60.796 57.143 6.62 6.62 0.00 3.42
4353 19385 4.092821 TGATCGTTGGTTCATTCATTCGTC 59.907 41.667 0.00 0.00 0.00 4.20
4363 19397 7.658167 TGGTTCATTCATTCGTCTACTTTTGTA 59.342 33.333 0.00 0.00 0.00 2.41
4364 19398 7.955864 GGTTCATTCATTCGTCTACTTTTGTAC 59.044 37.037 0.00 0.00 0.00 2.90
4365 19399 8.709646 GTTCATTCATTCGTCTACTTTTGTACT 58.290 33.333 0.00 0.00 0.00 2.73
4366 19400 9.917129 TTCATTCATTCGTCTACTTTTGTACTA 57.083 29.630 0.00 0.00 0.00 1.82
4403 19438 6.611381 ACTTGTTCATTCATTCATTGGTACG 58.389 36.000 0.00 0.00 0.00 3.67
4440 19475 4.619760 CACGTTAACTCATTTGCTCGTCTA 59.380 41.667 3.71 0.00 0.00 2.59
4458 19513 4.935808 CGTCTATTTTGTTCCAACTAGCCT 59.064 41.667 0.00 0.00 0.00 4.58
4459 19514 5.063564 CGTCTATTTTGTTCCAACTAGCCTC 59.936 44.000 0.00 0.00 0.00 4.70
4467 19529 1.153823 CAACTAGCCTCGTGTCCCG 60.154 63.158 0.00 0.00 38.13 5.14
4473 19535 0.611714 AGCCTCGTGTCCCGTTTTAT 59.388 50.000 0.00 0.00 37.94 1.40
4486 19571 2.676342 CCGTTTTATCGGGAGGAACAAG 59.324 50.000 0.00 0.00 45.88 3.16
4582 19681 1.009900 TTGTAAAACCGTTGCCGCG 60.010 52.632 0.00 0.00 0.00 6.46
4591 19690 2.942879 GTTGCCGCGTCAATGTCA 59.057 55.556 5.64 0.00 0.00 3.58
4603 19702 3.848019 CGTCAATGTCAAATGCACTTAGC 59.152 43.478 0.00 0.00 45.96 3.09
4614 19714 1.450312 CACTTAGCGGGGGCAGAAG 60.450 63.158 0.00 0.00 0.00 2.85
4640 19740 9.113838 GGCAAATCTTCATAGTTTGAGATTCTA 57.886 33.333 0.00 0.00 34.20 2.10
4658 20660 6.497259 AGATTCTAGTGTTTCTTACAGGGTGA 59.503 38.462 0.00 0.00 37.45 4.02
4663 20665 3.042682 TGTTTCTTACAGGGTGACTCCA 58.957 45.455 0.00 0.00 38.11 3.86
4686 20688 1.048601 AGTCTTCGACAAGGGAGCAA 58.951 50.000 0.00 0.00 34.60 3.91
4710 20713 2.814023 CTCTACCGAGGACAGCCAT 58.186 57.895 0.00 0.00 36.29 4.40
4734 20737 6.620877 TGAAGGCTAGACTTAGGATTTTCA 57.379 37.500 11.88 0.00 0.00 2.69
4736 20739 6.213600 TGAAGGCTAGACTTAGGATTTTCACT 59.786 38.462 11.88 0.00 0.00 3.41
4739 20742 5.104900 GGCTAGACTTAGGATTTTCACTCCA 60.105 44.000 0.00 0.00 35.08 3.86
4770 20773 2.069273 CTTGGTACTCAAAGAGCACCG 58.931 52.381 10.86 0.00 46.18 4.94
4771 20774 1.045407 TGGTACTCAAAGAGCACCGT 58.955 50.000 10.86 0.00 46.18 4.83
4778 20781 3.632145 ACTCAAAGAGCACCGTCAAAAAT 59.368 39.130 0.00 0.00 32.04 1.82
4779 20782 3.963665 TCAAAGAGCACCGTCAAAAATG 58.036 40.909 0.00 0.00 0.00 2.32
4800 20803 2.515398 CCCACAGAGTTGCCACCA 59.485 61.111 0.00 0.00 0.00 4.17
4801 20804 1.898574 CCCACAGAGTTGCCACCAC 60.899 63.158 0.00 0.00 0.00 4.16
4802 20805 1.149174 CCACAGAGTTGCCACCACT 59.851 57.895 0.00 0.00 0.00 4.00
4803 20806 0.466189 CCACAGAGTTGCCACCACTT 60.466 55.000 0.00 0.00 0.00 3.16
4804 20807 0.664761 CACAGAGTTGCCACCACTTG 59.335 55.000 0.00 0.00 0.00 3.16
4806 20809 1.529244 AGAGTTGCCACCACTTGCC 60.529 57.895 0.00 0.00 0.00 4.52
4807 20810 1.827789 GAGTTGCCACCACTTGCCA 60.828 57.895 0.00 0.00 0.00 4.92
4829 20834 2.163211 GGAAGAAGTCTTGCTCCAATGC 59.837 50.000 5.40 0.00 40.55 3.56
4832 20837 0.962356 AAGTCTTGCTCCAATGCCCG 60.962 55.000 0.00 0.00 0.00 6.13
4834 20839 1.377202 TCTTGCTCCAATGCCCGTC 60.377 57.895 0.00 0.00 0.00 4.79
4835 20840 1.675310 CTTGCTCCAATGCCCGTCA 60.675 57.895 0.00 0.00 0.00 4.35
4836 20841 1.228398 TTGCTCCAATGCCCGTCAA 60.228 52.632 0.00 0.00 0.00 3.18
4838 20843 1.212751 GCTCCAATGCCCGTCAAAC 59.787 57.895 0.00 0.00 0.00 2.93
4843 20856 1.665735 CCAATGCCCGTCAAACTTTCG 60.666 52.381 0.00 0.00 0.00 3.46
4844 20857 1.265635 CAATGCCCGTCAAACTTTCGA 59.734 47.619 0.00 0.00 0.00 3.71
4847 20860 0.658897 GCCCGTCAAACTTTCGAACA 59.341 50.000 0.00 0.00 0.00 3.18
4849 20862 2.287368 GCCCGTCAAACTTTCGAACAAT 60.287 45.455 0.00 0.00 0.00 2.71
4859 20872 6.391227 AACTTTCGAACAATGATGAAACCT 57.609 33.333 0.00 0.00 0.00 3.50
4864 20877 4.387559 TCGAACAATGATGAAACCTACACG 59.612 41.667 0.00 0.00 0.00 4.49
4877 20890 3.711863 ACCTACACGTTGGGGAGTTATA 58.288 45.455 2.77 0.00 0.00 0.98
4878 20891 4.095946 ACCTACACGTTGGGGAGTTATAA 58.904 43.478 2.77 0.00 0.00 0.98
4879 20892 4.531732 ACCTACACGTTGGGGAGTTATAAA 59.468 41.667 2.77 0.00 0.00 1.40
4893 20906 8.817876 GGGGAGTTATAAAGAAGCTAGATGTAT 58.182 37.037 0.00 0.00 0.00 2.29
4894 20907 9.863845 GGGAGTTATAAAGAAGCTAGATGTATC 57.136 37.037 0.00 0.00 0.00 2.24
4917 20930 7.199541 TCTACGCTAATATGTAGAGGACAAC 57.800 40.000 0.00 0.00 42.78 3.32
4918 20931 4.856664 ACGCTAATATGTAGAGGACAACG 58.143 43.478 0.00 0.00 42.78 4.10
4939 20952 2.401351 GATACCCGTTAGCGTTCATCC 58.599 52.381 0.00 0.00 36.15 3.51
4942 20955 0.529992 CCCGTTAGCGTTCATCCCTC 60.530 60.000 0.00 0.00 36.15 4.30
4950 20963 3.390521 TTCATCCCTCGCGCTGGT 61.391 61.111 5.56 1.41 0.00 4.00
4951 20964 2.055633 TTCATCCCTCGCGCTGGTA 61.056 57.895 5.56 0.00 0.00 3.25
4953 20966 2.123854 ATCCCTCGCGCTGGTAGA 60.124 61.111 5.56 1.87 0.00 2.59
4958 20971 1.446099 CTCGCGCTGGTAGAAAGCA 60.446 57.895 5.56 0.00 40.86 3.91
4976 20989 1.740025 GCAAAGGGTAGACTGTCATGC 59.260 52.381 10.88 5.14 0.00 4.06
4996 21009 3.118454 GACCACATGGCCACGTCG 61.118 66.667 8.16 0.00 39.32 5.12
5010 21023 2.046892 GTCGCATGTGCCACCTCT 60.047 61.111 0.00 0.00 37.91 3.69
5012 21025 0.807667 GTCGCATGTGCCACCTCTAG 60.808 60.000 0.00 0.00 37.91 2.43
5023 21036 2.682155 CACCTCTAGTGGCCTCTTTC 57.318 55.000 13.50 0.00 43.26 2.62
5032 21045 2.341452 GGCCTCTTTCGCCAAGTTT 58.659 52.632 0.00 0.00 46.27 2.66
5036 21049 2.029918 GCCTCTTTCGCCAAGTTTTCAT 60.030 45.455 0.00 0.00 33.66 2.57
5037 21050 3.568538 CCTCTTTCGCCAAGTTTTCATG 58.431 45.455 0.00 0.00 33.66 3.07
5038 21051 3.568538 CTCTTTCGCCAAGTTTTCATGG 58.431 45.455 0.00 0.00 41.13 3.66
5044 21057 1.631405 CCAAGTTTTCATGGCCTCCA 58.369 50.000 3.32 0.00 38.19 3.86
5052 21065 2.425143 TCATGGCCTCCAACTCAATC 57.575 50.000 3.32 0.00 36.95 2.67
5057 21070 1.084370 GCCTCCAACTCAATCGGTCG 61.084 60.000 0.00 0.00 0.00 4.79
5061 21074 0.374758 CCAACTCAATCGGTCGCATG 59.625 55.000 0.00 0.00 0.00 4.06
5062 21075 0.374758 CAACTCAATCGGTCGCATGG 59.625 55.000 0.00 0.00 0.00 3.66
5064 21077 1.522355 CTCAATCGGTCGCATGGCT 60.522 57.895 0.00 0.00 0.00 4.75
5071 21084 3.490759 GTCGCATGGCTGTCGGTG 61.491 66.667 0.00 0.00 0.00 4.94
5100 21113 3.182967 CGAAGGGATCACGAAGAAGAAG 58.817 50.000 0.00 0.00 0.00 2.85
5105 21118 4.223923 AGGGATCACGAAGAAGAAGACATT 59.776 41.667 0.00 0.00 0.00 2.71
5112 21125 7.151976 TCACGAAGAAGAAGACATTTACATCA 58.848 34.615 0.00 0.00 0.00 3.07
5116 21129 8.759641 CGAAGAAGAAGACATTTACATCATAGG 58.240 37.037 0.00 0.00 0.00 2.57
5118 21131 8.324191 AGAAGAAGACATTTACATCATAGGGA 57.676 34.615 0.00 0.00 0.00 4.20
5122 21135 8.497745 AGAAGACATTTACATCATAGGGAATGT 58.502 33.333 0.00 0.00 39.59 2.71
5132 21145 3.384789 TCATAGGGAATGTCGGTTCTCAG 59.615 47.826 0.00 0.00 36.89 3.35
5144 21157 1.146930 TTCTCAGCGGATCATGCCC 59.853 57.895 5.64 0.00 0.00 5.36
5158 21171 2.367512 GCCCCCATCCACTCCTCT 60.368 66.667 0.00 0.00 0.00 3.69
5168 21181 1.374190 CACTCCTCTGCTGCACCTT 59.626 57.895 0.00 0.00 0.00 3.50
5193 21206 4.626081 GAGCCACCGCCGCCATAT 62.626 66.667 0.00 0.00 34.57 1.78
5206 21219 2.569853 CCGCCATATGTCCCCTATAACA 59.430 50.000 1.24 0.00 0.00 2.41
5208 21221 4.253685 CGCCATATGTCCCCTATAACAAG 58.746 47.826 1.24 0.00 0.00 3.16
5210 21223 4.288626 GCCATATGTCCCCTATAACAAGGA 59.711 45.833 1.24 0.00 39.15 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.007626 GGTTCGCTTACAGATTATGCAATCA 59.992 40.000 0.00 0.00 42.66 2.57
72 73 4.456911 TGAGCTACTCTTTTGCATTTGAGG 59.543 41.667 12.72 1.03 0.00 3.86
136 137 3.058639 GCAGCAGTTTGTCTCTTTACCAG 60.059 47.826 0.00 0.00 0.00 4.00
289 290 4.085415 CGTCCGTTTAGTGACAGTGTAAAC 60.085 45.833 0.00 2.43 34.62 2.01
308 309 8.017946 GGAAAGCTTGATAATATTCATTCGTCC 58.982 37.037 0.00 0.00 0.00 4.79
588 591 5.820345 GAATCAGTTTCAAAGCAGAGGGCA 61.820 45.833 0.00 0.00 38.52 5.36
700 735 8.141909 GCTAAAGGTGGTCTGATAAAAGTTTTT 58.858 33.333 6.10 0.00 0.00 1.94
783 818 7.388776 GCATTTAGCTCATCATACAGGTTCATA 59.611 37.037 0.00 0.00 41.15 2.15
904 939 3.862267 CCGTTGATCTGTGATGAGAACTC 59.138 47.826 0.00 0.00 0.00 3.01
908 943 1.550072 TGCCGTTGATCTGTGATGAGA 59.450 47.619 0.00 0.00 0.00 3.27
909 944 1.662629 GTGCCGTTGATCTGTGATGAG 59.337 52.381 0.00 0.00 0.00 2.90
910 945 1.001860 TGTGCCGTTGATCTGTGATGA 59.998 47.619 0.00 0.00 0.00 2.92
911 946 1.441738 TGTGCCGTTGATCTGTGATG 58.558 50.000 0.00 0.00 0.00 3.07
912 947 1.806542 GTTGTGCCGTTGATCTGTGAT 59.193 47.619 0.00 0.00 0.00 3.06
920 955 0.534877 ATGCTCTGTTGTGCCGTTGA 60.535 50.000 0.00 0.00 32.27 3.18
952 987 2.141517 CTTGATGATCCGCTGTGATCC 58.858 52.381 5.60 0.00 40.37 3.36
956 991 2.014335 TGTCTTGATGATCCGCTGTG 57.986 50.000 0.00 0.00 0.00 3.66
1056 1097 2.748843 GGACGTCGTCGGAGAGTCC 61.749 68.421 18.61 11.39 41.19 3.85
1062 1103 4.034258 GTGCTGGACGTCGTCGGA 62.034 66.667 18.61 4.90 41.85 4.55
1076 1117 2.354305 AGTTGTCCGACGTCGTGC 60.354 61.111 33.49 25.16 37.74 5.34
1117 1170 4.821589 CCGCGTCCTCTTCCTGGC 62.822 72.222 4.92 0.00 0.00 4.85
1158 1211 1.916777 GACGAACTCCCCTTCCCCA 60.917 63.158 0.00 0.00 0.00 4.96
1223 1276 4.101448 GATGGCTGGTCCGGTGCT 62.101 66.667 0.00 0.00 37.80 4.40
1444 1497 1.834822 GCCTAGCCTCCTGATCCGT 60.835 63.158 0.00 0.00 0.00 4.69
1452 1505 2.365635 TCCTGGTGCCTAGCCTCC 60.366 66.667 0.00 0.00 0.00 4.30
1468 1521 2.811317 CTCCAGCAAGACGCCGTC 60.811 66.667 9.71 9.71 44.04 4.79
1472 1525 1.905922 GAACAGCTCCAGCAAGACGC 61.906 60.000 0.48 0.00 45.16 5.19
1482 1550 2.424246 AGCTAACTAGACGAACAGCTCC 59.576 50.000 0.00 0.00 34.35 4.70
1501 1569 1.238439 AGCAGAGAGATCGAGCTAGC 58.762 55.000 1.61 6.62 33.06 3.42
1511 1579 3.771479 TCCTGAATTAGCAAGCAGAGAGA 59.229 43.478 0.00 0.00 0.00 3.10
1539 1607 7.068839 ACCTAACGTATCATTCTGAAGATCTGT 59.931 37.037 0.00 0.38 0.00 3.41
1542 1610 9.400638 CTAACCTAACGTATCATTCTGAAGATC 57.599 37.037 0.00 0.00 0.00 2.75
1555 1623 6.985117 TGAAGACACAACTAACCTAACGTAT 58.015 36.000 0.00 0.00 0.00 3.06
1559 1627 7.656137 TCATTCTGAAGACACAACTAACCTAAC 59.344 37.037 0.00 0.00 0.00 2.34
1568 1783 6.105333 AGCTATCTCATTCTGAAGACACAAC 58.895 40.000 0.00 0.00 0.00 3.32
1584 1799 5.569823 GTCGATCGGACAATTAAGCTATCTC 59.430 44.000 16.41 0.00 45.36 2.75
1610 1906 7.713942 CCCGCAAAAATATATACTATACTCCCC 59.286 40.741 0.00 0.00 0.00 4.81
1615 1911 6.824704 TGGCCCCGCAAAAATATATACTATAC 59.175 38.462 0.00 0.00 0.00 1.47
1617 1913 5.822204 TGGCCCCGCAAAAATATATACTAT 58.178 37.500 0.00 0.00 0.00 2.12
1618 1914 5.244189 TGGCCCCGCAAAAATATATACTA 57.756 39.130 0.00 0.00 0.00 1.82
1619 1915 4.107127 TGGCCCCGCAAAAATATATACT 57.893 40.909 0.00 0.00 0.00 2.12
1622 2025 3.778265 AGATGGCCCCGCAAAAATATAT 58.222 40.909 0.00 0.00 0.00 0.86
1626 2029 0.249955 CAAGATGGCCCCGCAAAAAT 59.750 50.000 0.00 0.00 0.00 1.82
1638 2041 7.712205 TGTGAACTGTGATCATATACAAGATGG 59.288 37.037 0.00 0.00 0.00 3.51
1642 2045 8.484641 ACTTGTGAACTGTGATCATATACAAG 57.515 34.615 22.48 22.48 35.23 3.16
1658 2061 2.485814 GCTCTGGATTGGACTTGTGAAC 59.514 50.000 0.00 0.00 0.00 3.18
1673 2076 4.843728 TGGAGTACAAATTTAGGCTCTGG 58.156 43.478 0.00 0.00 0.00 3.86
1691 2094 6.420008 GCAGCTTTATATTGCAGAATTTGGAG 59.580 38.462 0.00 0.00 37.75 3.86
1692 2095 6.275335 GCAGCTTTATATTGCAGAATTTGGA 58.725 36.000 0.00 0.00 37.75 3.53
1693 2096 5.464389 GGCAGCTTTATATTGCAGAATTTGG 59.536 40.000 0.00 0.00 39.54 3.28
1694 2097 6.278363 AGGCAGCTTTATATTGCAGAATTTG 58.722 36.000 0.00 0.00 39.54 2.32
1715 5853 4.860907 TCGACGATCTTAAGTTGTAAAGGC 59.139 41.667 1.63 0.00 0.00 4.35
1739 5877 5.098211 GGACACCAGTATACTGTTAACGTC 58.902 45.833 27.07 22.36 42.27 4.34
1745 5883 2.811410 TCCGGACACCAGTATACTGTT 58.189 47.619 27.07 14.21 42.27 3.16
1749 5887 5.717078 TGATATTCCGGACACCAGTATAC 57.283 43.478 1.83 0.00 0.00 1.47
1754 5892 3.198068 CACTTGATATTCCGGACACCAG 58.802 50.000 1.83 0.00 0.00 4.00
1770 5914 6.487689 GGTTTCTAGATCTCAAACCACTTG 57.512 41.667 28.74 0.00 45.76 3.16
1785 5929 3.318557 GGGAGTAGGATCGTGGTTTCTAG 59.681 52.174 0.00 0.00 0.00 2.43
1794 5939 0.395311 TTGCGAGGGAGTAGGATCGT 60.395 55.000 0.00 0.00 37.49 3.73
1795 5940 0.744874 TTTGCGAGGGAGTAGGATCG 59.255 55.000 0.00 0.00 38.19 3.69
1826 5971 5.936372 GGTAGTAGGATCGTGGTTTCTTTTT 59.064 40.000 0.00 0.00 0.00 1.94
1827 5972 5.247792 AGGTAGTAGGATCGTGGTTTCTTTT 59.752 40.000 0.00 0.00 0.00 2.27
1828 5973 4.776308 AGGTAGTAGGATCGTGGTTTCTTT 59.224 41.667 0.00 0.00 0.00 2.52
1829 5974 4.159879 CAGGTAGTAGGATCGTGGTTTCTT 59.840 45.833 0.00 0.00 0.00 2.52
1830 5975 3.700038 CAGGTAGTAGGATCGTGGTTTCT 59.300 47.826 0.00 0.00 0.00 2.52
1831 5976 3.446516 ACAGGTAGTAGGATCGTGGTTTC 59.553 47.826 0.00 0.00 0.00 2.78
1832 5977 3.194968 CACAGGTAGTAGGATCGTGGTTT 59.805 47.826 0.00 0.00 0.00 3.27
1833 5978 2.758979 CACAGGTAGTAGGATCGTGGTT 59.241 50.000 0.00 0.00 0.00 3.67
1834 5979 2.291411 ACACAGGTAGTAGGATCGTGGT 60.291 50.000 0.00 0.00 0.00 4.16
1835 5980 2.376109 ACACAGGTAGTAGGATCGTGG 58.624 52.381 0.00 0.00 0.00 4.94
1836 5981 4.451629 AAACACAGGTAGTAGGATCGTG 57.548 45.455 0.00 0.00 0.00 4.35
1837 5982 6.786967 ATAAAACACAGGTAGTAGGATCGT 57.213 37.500 0.00 0.00 0.00 3.73
1838 5983 6.417044 CGAATAAAACACAGGTAGTAGGATCG 59.583 42.308 0.00 0.00 0.00 3.69
1839 5984 7.222224 CACGAATAAAACACAGGTAGTAGGATC 59.778 40.741 0.00 0.00 0.00 3.36
1840 5985 7.039882 CACGAATAAAACACAGGTAGTAGGAT 58.960 38.462 0.00 0.00 0.00 3.24
1841 5986 6.392354 CACGAATAAAACACAGGTAGTAGGA 58.608 40.000 0.00 0.00 0.00 2.94
1842 5987 5.063060 GCACGAATAAAACACAGGTAGTAGG 59.937 44.000 0.00 0.00 0.00 3.18
1843 5988 5.867716 AGCACGAATAAAACACAGGTAGTAG 59.132 40.000 0.00 0.00 0.00 2.57
1844 5989 5.786311 AGCACGAATAAAACACAGGTAGTA 58.214 37.500 0.00 0.00 0.00 1.82
1861 6006 0.601057 TTCGAACAGATGGAGCACGA 59.399 50.000 0.00 0.00 0.00 4.35
1866 6012 3.681897 CACCTCTTTTCGAACAGATGGAG 59.318 47.826 24.34 17.48 0.00 3.86
1869 6015 2.160417 GGCACCTCTTTTCGAACAGATG 59.840 50.000 14.08 13.54 0.00 2.90
1870 6016 2.224523 TGGCACCTCTTTTCGAACAGAT 60.225 45.455 14.08 0.00 0.00 2.90
1878 6024 2.109425 ACGGTATGGCACCTCTTTTC 57.891 50.000 0.00 0.00 46.19 2.29
1882 6028 0.981183 TGAAACGGTATGGCACCTCT 59.019 50.000 0.00 0.00 46.19 3.69
1883 6029 1.816074 TTGAAACGGTATGGCACCTC 58.184 50.000 0.00 0.00 46.19 3.85
1884 6030 2.279935 TTTGAAACGGTATGGCACCT 57.720 45.000 0.00 0.00 46.19 4.00
1885 6031 3.372660 TTTTTGAAACGGTATGGCACC 57.627 42.857 0.00 0.00 44.75 5.01
1912 6058 8.624776 GGATATAGACTTATTGCAGCTGTTTTT 58.375 33.333 16.64 0.71 0.00 1.94
1913 6059 7.995488 AGGATATAGACTTATTGCAGCTGTTTT 59.005 33.333 16.64 2.60 0.00 2.43
1914 6060 7.443575 CAGGATATAGACTTATTGCAGCTGTTT 59.556 37.037 16.64 2.98 0.00 2.83
1915 6061 6.933521 CAGGATATAGACTTATTGCAGCTGTT 59.066 38.462 16.64 3.36 0.00 3.16
1934 6080 3.378427 CGATGTGTCACTCTGTCAGGATA 59.622 47.826 4.27 0.00 0.00 2.59
1940 6086 2.744741 TCTCTCGATGTGTCACTCTGTC 59.255 50.000 4.27 0.00 0.00 3.51
1942 6088 3.006247 TCTCTCTCGATGTGTCACTCTG 58.994 50.000 4.27 0.00 0.00 3.35
1956 6102 7.083858 GTCAATAGTGTGCTCATATCTCTCTC 58.916 42.308 0.00 0.00 0.00 3.20
1957 6103 6.548993 TGTCAATAGTGTGCTCATATCTCTCT 59.451 38.462 0.00 0.00 0.00 3.10
1974 6120 7.738345 TGTACAATGTCGACATTTGTCAATAG 58.262 34.615 35.15 24.38 43.48 1.73
1977 6123 5.993106 TGTACAATGTCGACATTTGTCAA 57.007 34.783 35.15 23.36 43.48 3.18
1984 6130 4.021456 TCTCCACTTGTACAATGTCGACAT 60.021 41.667 25.18 25.18 38.41 3.06
1997 6144 3.309296 TCTCACTTCCTTCTCCACTTGT 58.691 45.455 0.00 0.00 0.00 3.16
2013 6160 8.581057 TTTATAGCATCTTTCTCGATTCTCAC 57.419 34.615 0.00 0.00 0.00 3.51
2021 6168 8.903570 ACTCGATATTTATAGCATCTTTCTCG 57.096 34.615 0.00 0.00 0.00 4.04
2081 6228 5.004448 GGAGTGGAGTGTATCGATCAGATA 58.996 45.833 0.00 0.00 40.66 1.98
2083 6230 3.215151 GGAGTGGAGTGTATCGATCAGA 58.785 50.000 0.00 0.00 0.00 3.27
2085 6232 2.952310 CTGGAGTGGAGTGTATCGATCA 59.048 50.000 0.00 0.00 0.00 2.92
2089 6236 3.775202 CTTTCTGGAGTGGAGTGTATCG 58.225 50.000 0.00 0.00 0.00 2.92
2095 9691 1.346068 GTCTGCTTTCTGGAGTGGAGT 59.654 52.381 0.00 0.00 35.48 3.85
2097 9693 1.423584 TGTCTGCTTTCTGGAGTGGA 58.576 50.000 0.00 0.00 35.48 4.02
2102 9698 5.637810 CGTTTAACTATGTCTGCTTTCTGGA 59.362 40.000 0.00 0.00 0.00 3.86
2104 9700 6.467723 ACGTTTAACTATGTCTGCTTTCTG 57.532 37.500 0.00 0.00 0.00 3.02
2118 9714 2.997986 CCGTCATGCCTTACGTTTAACT 59.002 45.455 0.00 0.00 37.40 2.24
2120 9716 2.737783 CACCGTCATGCCTTACGTTTAA 59.262 45.455 0.00 0.00 37.40 1.52
2125 9721 0.108804 AGTCACCGTCATGCCTTACG 60.109 55.000 0.00 0.00 38.80 3.18
2126 9722 2.165845 ACTAGTCACCGTCATGCCTTAC 59.834 50.000 0.00 0.00 0.00 2.34
2143 9739 9.685828 GTTAGAGTTGCTTGATATTCCTACTAG 57.314 37.037 0.00 0.00 0.00 2.57
2146 9742 6.421202 CGGTTAGAGTTGCTTGATATTCCTAC 59.579 42.308 0.00 0.00 0.00 3.18
2149 9745 5.357257 TCGGTTAGAGTTGCTTGATATTCC 58.643 41.667 0.00 0.00 0.00 3.01
2156 9752 3.325870 TGTGATCGGTTAGAGTTGCTTG 58.674 45.455 0.00 0.00 0.00 4.01
2161 9757 8.308931 TGTTAAGTATTGTGATCGGTTAGAGTT 58.691 33.333 0.00 0.00 0.00 3.01
2192 9788 8.357796 TCTGATCTGAAAATGTCGCTTATTAG 57.642 34.615 0.00 0.00 0.00 1.73
2197 9793 6.506500 AAATCTGATCTGAAAATGTCGCTT 57.493 33.333 6.37 0.00 0.00 4.68
2198 9794 7.798596 ATAAATCTGATCTGAAAATGTCGCT 57.201 32.000 6.37 0.00 0.00 4.93
2199 9795 8.982685 TCTATAAATCTGATCTGAAAATGTCGC 58.017 33.333 6.37 0.00 0.00 5.19
2233 9949 8.028938 TCTGGTTGAAGCATAAAAGCTAAAATC 58.971 33.333 0.00 0.00 45.89 2.17
2236 9952 6.264292 TGTCTGGTTGAAGCATAAAAGCTAAA 59.736 34.615 0.00 0.00 45.89 1.85
2265 9981 7.568199 ACGGATTTAAAATGTTGCTAGCTAT 57.432 32.000 17.23 5.11 0.00 2.97
2268 9984 8.628882 AAATACGGATTTAAAATGTTGCTAGC 57.371 30.769 8.10 8.10 33.33 3.42
2324 10040 9.435688 CAAATCCACGACCATCTTATATATTGA 57.564 33.333 0.00 0.00 0.00 2.57
2325 10041 8.177663 GCAAATCCACGACCATCTTATATATTG 58.822 37.037 0.00 0.00 0.00 1.90
2326 10042 8.103305 AGCAAATCCACGACCATCTTATATATT 58.897 33.333 0.00 0.00 0.00 1.28
2327 10043 7.624549 AGCAAATCCACGACCATCTTATATAT 58.375 34.615 0.00 0.00 0.00 0.86
2328 10044 7.004555 AGCAAATCCACGACCATCTTATATA 57.995 36.000 0.00 0.00 0.00 0.86
2329 10045 5.869579 AGCAAATCCACGACCATCTTATAT 58.130 37.500 0.00 0.00 0.00 0.86
2330 10046 5.290493 AGCAAATCCACGACCATCTTATA 57.710 39.130 0.00 0.00 0.00 0.98
2331 10047 4.156455 AGCAAATCCACGACCATCTTAT 57.844 40.909 0.00 0.00 0.00 1.73
2332 10048 3.627395 AGCAAATCCACGACCATCTTA 57.373 42.857 0.00 0.00 0.00 2.10
2333 10049 2.496899 AGCAAATCCACGACCATCTT 57.503 45.000 0.00 0.00 0.00 2.40
2334 10050 2.420129 GGTAGCAAATCCACGACCATCT 60.420 50.000 0.00 0.00 0.00 2.90
2335 10051 1.940613 GGTAGCAAATCCACGACCATC 59.059 52.381 0.00 0.00 0.00 3.51
2336 10052 1.408266 GGGTAGCAAATCCACGACCAT 60.408 52.381 0.00 0.00 0.00 3.55
2337 10053 0.035820 GGGTAGCAAATCCACGACCA 60.036 55.000 0.00 0.00 0.00 4.02
2338 10054 0.035820 TGGGTAGCAAATCCACGACC 60.036 55.000 0.00 0.00 0.00 4.79
2339 10055 1.084289 GTGGGTAGCAAATCCACGAC 58.916 55.000 5.82 0.00 41.03 4.34
2340 10056 3.543884 GTGGGTAGCAAATCCACGA 57.456 52.632 5.82 0.00 41.03 4.35
2343 10059 0.676466 CGCAGTGGGTAGCAAATCCA 60.676 55.000 0.00 0.00 0.00 3.41
2344 10060 0.392461 TCGCAGTGGGTAGCAAATCC 60.392 55.000 7.12 0.00 0.00 3.01
2345 10061 1.009829 CTCGCAGTGGGTAGCAAATC 58.990 55.000 7.12 0.00 0.00 2.17
2346 10062 0.324943 ACTCGCAGTGGGTAGCAAAT 59.675 50.000 7.12 0.00 0.00 2.32
2347 10063 0.602638 CACTCGCAGTGGGTAGCAAA 60.603 55.000 7.12 0.00 42.35 3.68
2350 10066 0.108138 AATCACTCGCAGTGGGTAGC 60.108 55.000 7.12 0.00 45.94 3.58
2353 10069 0.320771 GTGAATCACTCGCAGTGGGT 60.321 55.000 6.07 5.00 45.94 4.51
2358 10074 2.071540 ACATGTGTGAATCACTCGCAG 58.928 47.619 14.97 7.35 45.17 5.18
2361 10077 2.687370 TGGACATGTGTGAATCACTCG 58.313 47.619 14.97 2.28 46.27 4.18
2374 10090 2.436911 TCTCATCCTGGACATGGACATG 59.563 50.000 10.57 10.57 44.15 3.21
2375 10091 2.767972 TCTCATCCTGGACATGGACAT 58.232 47.619 0.00 0.00 36.30 3.06
2376 10092 2.252535 TCTCATCCTGGACATGGACA 57.747 50.000 0.00 0.00 36.30 4.02
2377 10093 3.274288 GTTTCTCATCCTGGACATGGAC 58.726 50.000 0.00 0.00 36.30 4.02
2378 10094 2.912295 TGTTTCTCATCCTGGACATGGA 59.088 45.455 0.00 0.00 38.06 3.41
2379 10095 3.354948 TGTTTCTCATCCTGGACATGG 57.645 47.619 0.00 0.00 0.00 3.66
2412 10128 9.139174 CCAAAATAAGTGTCATGGTTTACATTC 57.861 33.333 0.00 0.00 37.84 2.67
2413 10129 8.865090 TCCAAAATAAGTGTCATGGTTTACATT 58.135 29.630 0.00 0.00 37.84 2.71
2414 10130 8.415950 TCCAAAATAAGTGTCATGGTTTACAT 57.584 30.769 0.00 0.00 41.57 2.29
2416 10132 9.139174 CATTCCAAAATAAGTGTCATGGTTTAC 57.861 33.333 0.00 0.00 0.00 2.01
2417 10133 8.310382 CCATTCCAAAATAAGTGTCATGGTTTA 58.690 33.333 0.00 0.00 0.00 2.01
2418 10134 7.016072 TCCATTCCAAAATAAGTGTCATGGTTT 59.984 33.333 0.00 0.00 32.13 3.27
2419 10135 6.496565 TCCATTCCAAAATAAGTGTCATGGTT 59.503 34.615 0.00 0.00 32.13 3.67
2420 10136 6.015918 TCCATTCCAAAATAAGTGTCATGGT 58.984 36.000 0.00 0.00 32.13 3.55
2421 10137 6.528537 TCCATTCCAAAATAAGTGTCATGG 57.471 37.500 0.00 0.00 0.00 3.66
2425 10141 6.773976 TCCATCCATTCCAAAATAAGTGTC 57.226 37.500 0.00 0.00 0.00 3.67
2426 10142 6.350110 CGTTCCATCCATTCCAAAATAAGTGT 60.350 38.462 0.00 0.00 0.00 3.55
2427 10143 6.035843 CGTTCCATCCATTCCAAAATAAGTG 58.964 40.000 0.00 0.00 0.00 3.16
2428 10144 5.127031 CCGTTCCATCCATTCCAAAATAAGT 59.873 40.000 0.00 0.00 0.00 2.24
2429 10145 5.127031 ACCGTTCCATCCATTCCAAAATAAG 59.873 40.000 0.00 0.00 0.00 1.73
2430 10146 5.020132 ACCGTTCCATCCATTCCAAAATAA 58.980 37.500 0.00 0.00 0.00 1.40
2431 10147 4.605183 ACCGTTCCATCCATTCCAAAATA 58.395 39.130 0.00 0.00 0.00 1.40
2432 10148 3.440127 ACCGTTCCATCCATTCCAAAAT 58.560 40.909 0.00 0.00 0.00 1.82
2436 10152 2.595750 AAACCGTTCCATCCATTCCA 57.404 45.000 0.00 0.00 0.00 3.53
2438 10154 5.065602 GGTAGTTAAACCGTTCCATCCATTC 59.934 44.000 0.00 0.00 0.00 2.67
2439 10155 4.945543 GGTAGTTAAACCGTTCCATCCATT 59.054 41.667 0.00 0.00 0.00 3.16
2440 10156 4.019141 TGGTAGTTAAACCGTTCCATCCAT 60.019 41.667 0.00 0.00 42.91 3.41
2443 10159 4.572909 AGTGGTAGTTAAACCGTTCCATC 58.427 43.478 0.00 0.00 42.91 3.51
2444 10160 4.628963 AGTGGTAGTTAAACCGTTCCAT 57.371 40.909 0.00 0.00 42.91 3.41
2446 10162 6.859420 TTTTAGTGGTAGTTAAACCGTTCC 57.141 37.500 0.00 0.00 42.91 3.62
2472 11069 7.861630 TGCGTTGATAAGGATTTATTAAGAGC 58.138 34.615 0.00 0.00 34.21 4.09
2485 11082 7.275560 CCTTCCTTTTTAAATGCGTTGATAAGG 59.724 37.037 13.67 13.67 0.00 2.69
2500 11097 4.855340 CATCCCACTAGCCTTCCTTTTTA 58.145 43.478 0.00 0.00 0.00 1.52
2529 11129 5.628134 GCCTCTGTTTTATACTTTTCCACG 58.372 41.667 0.00 0.00 0.00 4.94
2533 11133 6.089954 ACGTACGCCTCTGTTTTATACTTTTC 59.910 38.462 16.72 0.00 0.00 2.29
2538 11138 5.098211 AGAACGTACGCCTCTGTTTTATAC 58.902 41.667 16.72 0.00 0.00 1.47
2575 12386 2.093106 CTAGCTGTTCTCCGTGTAGGT 58.907 52.381 0.00 0.00 41.99 3.08
2577 12388 1.472878 TGCTAGCTGTTCTCCGTGTAG 59.527 52.381 17.23 0.00 0.00 2.74
2583 12394 1.355066 GCGTGTGCTAGCTGTTCTCC 61.355 60.000 17.23 0.00 38.39 3.71
2603 12414 2.543445 CGATGCAGACAAAAGGCACAAA 60.543 45.455 0.00 0.00 40.83 2.83
2604 12415 1.001487 CGATGCAGACAAAAGGCACAA 60.001 47.619 0.00 0.00 40.83 3.33
2605 12416 0.592637 CGATGCAGACAAAAGGCACA 59.407 50.000 0.00 0.00 40.83 4.57
2606 12417 0.874390 TCGATGCAGACAAAAGGCAC 59.126 50.000 0.00 0.00 40.83 5.01
2607 12418 1.739466 GATCGATGCAGACAAAAGGCA 59.261 47.619 0.54 0.00 42.43 4.75
2608 12419 1.267732 CGATCGATGCAGACAAAAGGC 60.268 52.381 10.26 0.00 0.00 4.35
2609 12420 2.270923 TCGATCGATGCAGACAAAAGG 58.729 47.619 15.15 0.00 0.00 3.11
2610 12421 4.112793 GATCGATCGATGCAGACAAAAG 57.887 45.455 33.86 0.00 34.60 2.27
2624 12435 4.090138 AGCATCTATCACACGATCGATC 57.910 45.455 24.34 15.68 33.07 3.69
2633 12444 4.520179 AGCAACATGAAGCATCTATCACA 58.480 39.130 14.61 0.00 0.00 3.58
2637 12448 3.881688 GGTGAGCAACATGAAGCATCTAT 59.118 43.478 14.61 0.00 0.00 1.98
2638 12449 3.273434 GGTGAGCAACATGAAGCATCTA 58.727 45.455 14.61 0.00 0.00 1.98
2639 12450 2.089980 GGTGAGCAACATGAAGCATCT 58.910 47.619 14.61 0.00 0.00 2.90
2640 12451 1.133790 GGGTGAGCAACATGAAGCATC 59.866 52.381 14.61 10.11 0.00 3.91
2642 12453 1.236616 CGGGTGAGCAACATGAAGCA 61.237 55.000 14.61 0.00 0.00 3.91
2643 12454 0.955428 TCGGGTGAGCAACATGAAGC 60.955 55.000 0.00 2.43 0.00 3.86
2645 12456 0.948623 CGTCGGGTGAGCAACATGAA 60.949 55.000 0.00 0.00 0.00 2.57
2647 12458 0.389296 TACGTCGGGTGAGCAACATG 60.389 55.000 0.00 0.00 0.00 3.21
2648 12459 0.535335 ATACGTCGGGTGAGCAACAT 59.465 50.000 0.00 0.00 0.00 2.71
2649 12460 0.389296 CATACGTCGGGTGAGCAACA 60.389 55.000 0.00 0.00 0.00 3.33
2650 12461 0.389426 ACATACGTCGGGTGAGCAAC 60.389 55.000 0.00 0.00 0.00 4.17
2651 12462 0.108992 GACATACGTCGGGTGAGCAA 60.109 55.000 0.00 0.00 31.07 3.91
2652 12463 1.509463 GACATACGTCGGGTGAGCA 59.491 57.895 0.00 0.00 31.07 4.26
2653 12464 1.226888 GGACATACGTCGGGTGAGC 60.227 63.158 0.00 0.00 43.61 4.26
2654 12465 0.744874 ATGGACATACGTCGGGTGAG 59.255 55.000 0.00 0.00 43.61 3.51
2656 12467 0.458260 TGATGGACATACGTCGGGTG 59.542 55.000 0.00 0.00 43.61 4.61
2657 12468 0.458669 GTGATGGACATACGTCGGGT 59.541 55.000 0.00 0.00 43.61 5.28
2694 12508 1.293179 CAGCATGTCTCACCGGTCA 59.707 57.895 2.59 0.00 0.00 4.02
2721 12540 1.229177 ATTCCCACCCAACTTGCCC 60.229 57.895 0.00 0.00 0.00 5.36
2752 12571 0.168788 TCGGTTTACGTGGTAGCGAG 59.831 55.000 13.89 0.00 44.69 5.03
2753 12572 0.168788 CTCGGTTTACGTGGTAGCGA 59.831 55.000 16.00 16.00 44.69 4.93
2754 12573 2.645411 CTCGGTTTACGTGGTAGCG 58.355 57.895 0.00 4.95 44.69 4.26
2765 12584 2.114616 AGATGATCTCTGCCTCGGTTT 58.885 47.619 0.00 0.00 31.12 3.27
2796 12615 1.061566 CGTACGTACACAGCTCATCGA 59.938 52.381 24.50 0.00 0.00 3.59
2797 12616 1.201998 ACGTACGTACACAGCTCATCG 60.202 52.381 21.41 9.59 0.00 3.84
2802 12621 2.592194 CATTGACGTACGTACACAGCT 58.408 47.619 22.87 12.00 0.00 4.24
2804 12623 2.256174 CCCATTGACGTACGTACACAG 58.744 52.381 22.87 14.10 0.00 3.66
2823 12642 5.648572 ACTACTAGTAAGACATTCGTTGCC 58.351 41.667 3.76 0.00 0.00 4.52
2872 12691 9.393786 AGGATCAGGTATGGTACTTACAATAAT 57.606 33.333 0.00 0.00 17.59 1.28
2873 12692 8.792830 AGGATCAGGTATGGTACTTACAATAA 57.207 34.615 0.00 0.00 17.59 1.40
2874 12693 8.008332 TGAGGATCAGGTATGGTACTTACAATA 58.992 37.037 0.00 0.00 42.56 1.90
2875 12694 6.844388 TGAGGATCAGGTATGGTACTTACAAT 59.156 38.462 0.00 0.00 42.56 2.71
2876 12695 6.199376 TGAGGATCAGGTATGGTACTTACAA 58.801 40.000 0.00 0.00 42.56 2.41
2877 12696 5.773091 TGAGGATCAGGTATGGTACTTACA 58.227 41.667 0.00 0.00 42.56 2.41
2904 12723 9.813446 AGGTACTATGGTACTAATTCTTTTTCG 57.187 33.333 17.66 0.00 45.41 3.46
2925 12747 7.448748 AATTAAGGTTTCACATGACAGGTAC 57.551 36.000 0.00 0.00 0.00 3.34
2926 12748 8.158132 TGTAATTAAGGTTTCACATGACAGGTA 58.842 33.333 0.00 0.00 0.00 3.08
2927 12749 7.001674 TGTAATTAAGGTTTCACATGACAGGT 58.998 34.615 0.00 0.00 0.00 4.00
2938 12760 5.092781 CCGTGTGCATGTAATTAAGGTTTC 58.907 41.667 0.00 0.00 0.00 2.78
2961 12783 2.245532 GTGTGTGCGAGCGTGTTC 59.754 61.111 0.00 0.00 0.00 3.18
2987 12809 4.447138 TGTAAACATCCAGGAAAGTGGT 57.553 40.909 0.00 0.00 38.88 4.16
2990 12812 7.004086 TCATTCTTGTAAACATCCAGGAAAGT 58.996 34.615 0.00 0.00 31.61 2.66
2991 12813 7.452880 TCATTCTTGTAAACATCCAGGAAAG 57.547 36.000 0.00 0.00 31.61 2.62
2992 12814 7.521423 CGTTCATTCTTGTAAACATCCAGGAAA 60.521 37.037 0.00 0.00 31.61 3.13
2993 12815 6.072728 CGTTCATTCTTGTAAACATCCAGGAA 60.073 38.462 0.00 0.00 32.26 3.36
2994 12816 5.411361 CGTTCATTCTTGTAAACATCCAGGA 59.589 40.000 0.00 0.00 0.00 3.86
2995 12817 5.411361 TCGTTCATTCTTGTAAACATCCAGG 59.589 40.000 0.00 0.00 0.00 4.45
2996 12818 6.480524 TCGTTCATTCTTGTAAACATCCAG 57.519 37.500 0.00 0.00 0.00 3.86
2997 12819 6.869315 TTCGTTCATTCTTGTAAACATCCA 57.131 33.333 0.00 0.00 0.00 3.41
2998 12820 7.526608 TCATTCGTTCATTCTTGTAAACATCC 58.473 34.615 0.00 0.00 0.00 3.51
3000 12822 9.345517 CATTCATTCGTTCATTCTTGTAAACAT 57.654 29.630 0.00 0.00 0.00 2.71
3001 12823 8.563732 TCATTCATTCGTTCATTCTTGTAAACA 58.436 29.630 0.00 0.00 0.00 2.83
3002 12824 8.948853 TCATTCATTCGTTCATTCTTGTAAAC 57.051 30.769 0.00 0.00 0.00 2.01
3004 12826 9.558648 CATTCATTCATTCGTTCATTCTTGTAA 57.441 29.630 0.00 0.00 0.00 2.41
3005 12827 7.697710 GCATTCATTCATTCGTTCATTCTTGTA 59.302 33.333 0.00 0.00 0.00 2.41
3006 12828 6.529125 GCATTCATTCATTCGTTCATTCTTGT 59.471 34.615 0.00 0.00 0.00 3.16
3007 12829 6.528774 TGCATTCATTCATTCGTTCATTCTTG 59.471 34.615 0.00 0.00 0.00 3.02
3008 12830 6.623486 TGCATTCATTCATTCGTTCATTCTT 58.377 32.000 0.00 0.00 0.00 2.52
3009 12831 6.094464 TCTGCATTCATTCATTCGTTCATTCT 59.906 34.615 0.00 0.00 0.00 2.40
3010 12832 6.260377 TCTGCATTCATTCATTCGTTCATTC 58.740 36.000 0.00 0.00 0.00 2.67
3011 12833 6.198650 TCTGCATTCATTCATTCGTTCATT 57.801 33.333 0.00 0.00 0.00 2.57
3012 12834 5.823209 TCTGCATTCATTCATTCGTTCAT 57.177 34.783 0.00 0.00 0.00 2.57
3013 12835 5.625921 TTCTGCATTCATTCATTCGTTCA 57.374 34.783 0.00 0.00 0.00 3.18
3014 12836 6.032094 ACATTCTGCATTCATTCATTCGTTC 58.968 36.000 0.00 0.00 0.00 3.95
3015 12837 5.957798 ACATTCTGCATTCATTCATTCGTT 58.042 33.333 0.00 0.00 0.00 3.85
3016 12838 5.571784 ACATTCTGCATTCATTCATTCGT 57.428 34.783 0.00 0.00 0.00 3.85
3017 12839 8.570096 AAATACATTCTGCATTCATTCATTCG 57.430 30.769 0.00 0.00 0.00 3.34
3019 12841 9.878667 TCAAAATACATTCTGCATTCATTCATT 57.121 25.926 0.00 0.00 0.00 2.57
3020 12842 9.529325 CTCAAAATACATTCTGCATTCATTCAT 57.471 29.630 0.00 0.00 0.00 2.57
3021 12843 7.490079 GCTCAAAATACATTCTGCATTCATTCA 59.510 33.333 0.00 0.00 0.00 2.57
3022 12844 7.305820 CGCTCAAAATACATTCTGCATTCATTC 60.306 37.037 0.00 0.00 0.00 2.67
3023 12845 6.474427 CGCTCAAAATACATTCTGCATTCATT 59.526 34.615 0.00 0.00 0.00 2.57
3024 12846 5.975344 CGCTCAAAATACATTCTGCATTCAT 59.025 36.000 0.00 0.00 0.00 2.57
3025 12847 5.123661 TCGCTCAAAATACATTCTGCATTCA 59.876 36.000 0.00 0.00 0.00 2.57
3026 12848 5.572211 TCGCTCAAAATACATTCTGCATTC 58.428 37.500 0.00 0.00 0.00 2.67
3027 12849 5.565592 TCGCTCAAAATACATTCTGCATT 57.434 34.783 0.00 0.00 0.00 3.56
3028 12850 4.497006 GCTCGCTCAAAATACATTCTGCAT 60.497 41.667 0.00 0.00 0.00 3.96
3029 12851 3.181507 GCTCGCTCAAAATACATTCTGCA 60.182 43.478 0.00 0.00 0.00 4.41
3030 12852 3.357897 GCTCGCTCAAAATACATTCTGC 58.642 45.455 0.00 0.00 0.00 4.26
3031 12853 3.601356 CGCTCGCTCAAAATACATTCTG 58.399 45.455 0.00 0.00 0.00 3.02
3032 12854 2.030946 GCGCTCGCTCAAAATACATTCT 59.969 45.455 0.00 0.00 38.26 2.40
3033 12855 2.366859 GCGCTCGCTCAAAATACATTC 58.633 47.619 0.00 0.00 38.26 2.67
3034 12856 1.267532 CGCGCTCGCTCAAAATACATT 60.268 47.619 5.56 0.00 39.32 2.71
3035 12857 0.301687 CGCGCTCGCTCAAAATACAT 59.698 50.000 5.56 0.00 39.32 2.29
3109 12931 1.455383 GCCGGGTATGGAAGCAATGG 61.455 60.000 2.18 0.00 0.00 3.16
3110 12932 1.455383 GGCCGGGTATGGAAGCAATG 61.455 60.000 2.18 0.00 0.00 2.82
3111 12933 1.152756 GGCCGGGTATGGAAGCAAT 60.153 57.895 2.18 0.00 0.00 3.56
3112 12934 2.274104 GGCCGGGTATGGAAGCAA 59.726 61.111 2.18 0.00 0.00 3.91
3113 12935 2.690881 AGGCCGGGTATGGAAGCA 60.691 61.111 2.18 0.00 0.00 3.91
3114 12936 2.203209 CAGGCCGGGTATGGAAGC 60.203 66.667 2.18 0.00 0.00 3.86
3115 12937 2.044806 CTCCAGGCCGGGTATGGAAG 62.045 65.000 22.25 6.74 42.40 3.46
3116 12938 2.041430 TCCAGGCCGGGTATGGAA 59.959 61.111 22.25 0.00 40.13 3.53
3117 12939 1.951923 TACTCCAGGCCGGGTATGGA 61.952 60.000 22.25 15.77 40.80 3.41
3118 12940 1.458777 TACTCCAGGCCGGGTATGG 60.459 63.158 22.25 11.90 34.36 2.74
3119 12941 0.469331 TCTACTCCAGGCCGGGTATG 60.469 60.000 22.25 14.93 34.36 2.39
3120 12942 0.469518 GTCTACTCCAGGCCGGGTAT 60.470 60.000 22.25 13.30 34.36 2.73
3121 12943 1.076485 GTCTACTCCAGGCCGGGTA 60.076 63.158 22.25 15.38 34.36 3.69
3122 12944 2.363925 GTCTACTCCAGGCCGGGT 60.364 66.667 22.25 15.11 34.36 5.28
3123 12945 3.528370 CGTCTACTCCAGGCCGGG 61.528 72.222 17.03 17.03 34.36 5.73
3160 12984 2.403252 ACCTTACCTGATTCGGCTTG 57.597 50.000 0.00 0.00 0.00 4.01
3171 12995 4.531732 TGTATAAACGGTCCAACCTTACCT 59.468 41.667 0.00 0.00 35.66 3.08
3195 13019 4.542662 TCGCGAACCAGACTAGTATTAC 57.457 45.455 6.20 0.00 0.00 1.89
3196 13020 4.556104 GCATCGCGAACCAGACTAGTATTA 60.556 45.833 15.24 0.00 0.00 0.98
3197 13021 3.795826 GCATCGCGAACCAGACTAGTATT 60.796 47.826 15.24 0.00 0.00 1.89
3226 13053 3.391382 GTCCCACCCAGGAGACGG 61.391 72.222 0.00 0.00 41.22 4.79
3258 13106 3.113979 CGGTGCGGGGAAACGTAC 61.114 66.667 0.00 0.00 46.46 3.67
3271 13119 3.077705 CGTACGTTGGATGCGGTG 58.922 61.111 7.22 0.00 0.00 4.94
3272 13120 2.812178 GCGTACGTTGGATGCGGT 60.812 61.111 17.90 0.00 0.00 5.68
3273 13121 3.560278 GGCGTACGTTGGATGCGG 61.560 66.667 17.90 0.00 0.00 5.69
3400 18382 4.130118 GCTTGGATTGGATAGATTGACGT 58.870 43.478 0.00 0.00 0.00 4.34
3409 18391 0.531974 GGACGCGCTTGGATTGGATA 60.532 55.000 5.73 0.00 0.00 2.59
3410 18392 1.819632 GGACGCGCTTGGATTGGAT 60.820 57.895 5.73 0.00 0.00 3.41
3411 18393 2.435938 GGACGCGCTTGGATTGGA 60.436 61.111 5.73 0.00 0.00 3.53
3412 18394 3.508840 GGGACGCGCTTGGATTGG 61.509 66.667 5.73 0.00 0.00 3.16
3600 18593 4.462133 GCTCTATATATACGGCCTGGAGA 58.538 47.826 0.00 0.00 0.00 3.71
3601 18594 3.570550 GGCTCTATATATACGGCCTGGAG 59.429 52.174 17.48 9.75 36.96 3.86
3602 18595 3.563223 GGCTCTATATATACGGCCTGGA 58.437 50.000 17.48 0.00 36.96 3.86
3603 18596 2.293677 CGGCTCTATATATACGGCCTGG 59.706 54.545 20.18 0.00 37.66 4.45
3628 18621 1.033202 GTTGTGTTTGGGTCGGGTGT 61.033 55.000 0.00 0.00 0.00 4.16
3634 18627 1.680735 TGATGCTGTTGTGTTTGGGTC 59.319 47.619 0.00 0.00 0.00 4.46
3643 18636 0.870393 CGAGCTTGTGATGCTGTTGT 59.130 50.000 0.00 0.00 41.30 3.32
3659 18652 0.040958 GCTGTTCCTGTTGTTGCGAG 60.041 55.000 0.00 0.00 0.00 5.03
3688 18681 3.782042 CGGAAGGTGTAGAAGCGC 58.218 61.111 0.00 0.00 0.00 5.92
3700 18722 3.871594 GGGAAATATATGATCGCCGGAAG 59.128 47.826 5.05 0.00 0.00 3.46
3701 18723 3.677700 CGGGAAATATATGATCGCCGGAA 60.678 47.826 5.05 0.00 0.00 4.30
3702 18724 2.159156 CGGGAAATATATGATCGCCGGA 60.159 50.000 5.05 0.00 0.00 5.14
3703 18725 2.201732 CGGGAAATATATGATCGCCGG 58.798 52.381 0.00 0.00 0.00 6.13
3704 18726 2.201732 CCGGGAAATATATGATCGCCG 58.798 52.381 0.00 14.81 0.00 6.46
3705 18727 1.940613 GCCGGGAAATATATGATCGCC 59.059 52.381 2.18 0.00 0.00 5.54
3706 18728 1.940613 GGCCGGGAAATATATGATCGC 59.059 52.381 2.18 6.01 0.00 4.58
3715 18737 1.044231 TAGACTGCGGCCGGGAAATA 61.044 55.000 29.38 0.47 0.00 1.40
3760 18782 4.544651 CTGTGATGGATCGACTACTGATG 58.455 47.826 0.00 0.00 0.00 3.07
4101 19126 2.202932 CCTGGCCCATCTCGAACG 60.203 66.667 0.00 0.00 0.00 3.95
4230 19259 7.920227 AGAACTCTGTCCTAGTAGAACTCTAA 58.080 38.462 0.00 0.00 0.00 2.10
4232 19264 6.382919 AGAACTCTGTCCTAGTAGAACTCT 57.617 41.667 0.00 0.00 0.00 3.24
4233 19265 6.655848 TCAAGAACTCTGTCCTAGTAGAACTC 59.344 42.308 0.00 0.00 0.00 3.01
4245 19277 7.426929 ACACATGTTAATCAAGAACTCTGTC 57.573 36.000 0.00 0.00 0.00 3.51
4261 19293 3.236816 GCGTACGTACACTACACATGTT 58.763 45.455 24.50 0.00 0.00 2.71
4264 19296 1.731709 TCGCGTACGTACACTACACAT 59.268 47.619 24.50 0.00 41.18 3.21
4265 19297 1.144136 TCGCGTACGTACACTACACA 58.856 50.000 24.50 0.00 41.18 3.72
4274 19306 2.063156 ACAAACCAATCGCGTACGTA 57.937 45.000 17.90 6.00 41.18 3.57
4299 19331 0.237498 CGAGTGTGTCTGCGTGTAGA 59.763 55.000 0.00 0.00 0.00 2.59
4326 19358 6.847792 CGAATGAATGAACCAACGATCAATAG 59.152 38.462 0.00 0.00 0.00 1.73
4353 19385 9.647797 TCACCAATATGTGTAGTACAAAAGTAG 57.352 33.333 4.11 0.00 43.77 2.57
4363 19397 6.530120 TGAACAAGTCACCAATATGTGTAGT 58.470 36.000 0.00 0.00 37.51 2.73
4364 19398 7.615582 ATGAACAAGTCACCAATATGTGTAG 57.384 36.000 0.00 0.00 39.72 2.74
4365 19399 7.663493 TGAATGAACAAGTCACCAATATGTGTA 59.337 33.333 0.00 0.00 39.72 2.90
4366 19400 6.489700 TGAATGAACAAGTCACCAATATGTGT 59.510 34.615 0.00 0.00 39.72 3.72
4427 19462 5.698832 TGGAACAAAATAGACGAGCAAATG 58.301 37.500 0.00 0.00 31.92 2.32
4467 19529 5.878669 ACATACTTGTTCCTCCCGATAAAAC 59.121 40.000 0.00 0.00 29.55 2.43
4481 19543 9.665719 AAATGGAACAAAAAGAACATACTTGTT 57.334 25.926 0.00 0.00 46.48 2.83
4534 19631 2.840038 TCCCAGTCAGCACACAAGATAT 59.160 45.455 0.00 0.00 0.00 1.63
4582 19681 3.848019 CGCTAAGTGCATTTGACATTGAC 59.152 43.478 4.47 0.00 43.06 3.18
4591 19690 2.052104 GCCCCCGCTAAGTGCATTT 61.052 57.895 0.00 0.00 43.06 2.32
4603 19702 2.362889 ATTTGCCTTCTGCCCCCG 60.363 61.111 0.00 0.00 40.16 5.73
4614 19714 7.994194 AGAATCTCAAACTATGAAGATTTGCC 58.006 34.615 0.00 0.00 36.70 4.52
4628 19728 8.713271 CCTGTAAGAAACACTAGAATCTCAAAC 58.287 37.037 0.00 0.00 34.07 2.93
4640 19740 3.071167 GGAGTCACCCTGTAAGAAACACT 59.929 47.826 0.00 0.00 34.07 3.55
4643 19743 3.323979 TCTGGAGTCACCCTGTAAGAAAC 59.676 47.826 0.00 0.00 38.00 2.78
4707 20710 5.559148 ATCCTAAGTCTAGCCTTCAATGG 57.441 43.478 0.00 0.00 0.00 3.16
4710 20713 6.879458 GTGAAAATCCTAAGTCTAGCCTTCAA 59.121 38.462 0.00 0.00 0.00 2.69
4770 20773 3.319122 ACTCTGTGGGCTTCATTTTTGAC 59.681 43.478 0.00 0.00 0.00 3.18
4771 20774 3.565307 ACTCTGTGGGCTTCATTTTTGA 58.435 40.909 0.00 0.00 0.00 2.69
4778 20781 1.228245 GGCAACTCTGTGGGCTTCA 60.228 57.895 0.00 0.00 0.00 3.02
4779 20782 1.228245 TGGCAACTCTGTGGGCTTC 60.228 57.895 0.56 0.00 32.88 3.86
4800 20803 2.856222 CAAGACTTCTTCCTGGCAAGT 58.144 47.619 5.51 5.51 33.11 3.16
4801 20804 1.538950 GCAAGACTTCTTCCTGGCAAG 59.461 52.381 0.00 0.00 33.11 4.01
4802 20805 1.143684 AGCAAGACTTCTTCCTGGCAA 59.856 47.619 0.00 0.00 33.11 4.52
4803 20806 0.767375 AGCAAGACTTCTTCCTGGCA 59.233 50.000 0.00 0.00 33.11 4.92
4804 20807 1.447945 GAGCAAGACTTCTTCCTGGC 58.552 55.000 0.00 0.00 33.11 4.85
4806 20809 2.847327 TGGAGCAAGACTTCTTCCTG 57.153 50.000 13.17 0.00 33.11 3.86
4807 20810 3.683802 CATTGGAGCAAGACTTCTTCCT 58.316 45.455 13.17 0.00 33.11 3.36
4826 20831 1.265905 GTTCGAAAGTTTGACGGGCAT 59.734 47.619 0.00 0.00 0.00 4.40
4829 20834 3.002862 TCATTGTTCGAAAGTTTGACGGG 59.997 43.478 0.00 0.00 0.00 5.28
4832 20837 7.305993 GGTTTCATCATTGTTCGAAAGTTTGAC 60.306 37.037 0.00 0.00 0.00 3.18
4834 20839 6.697019 AGGTTTCATCATTGTTCGAAAGTTTG 59.303 34.615 0.00 0.00 0.00 2.93
4835 20840 6.805713 AGGTTTCATCATTGTTCGAAAGTTT 58.194 32.000 0.00 0.00 0.00 2.66
4836 20841 6.391227 AGGTTTCATCATTGTTCGAAAGTT 57.609 33.333 0.00 0.00 0.00 2.66
4838 20843 6.797033 GTGTAGGTTTCATCATTGTTCGAAAG 59.203 38.462 0.00 0.00 0.00 2.62
4843 20856 5.607119 ACGTGTAGGTTTCATCATTGTTC 57.393 39.130 0.00 0.00 0.00 3.18
4844 20857 5.278266 CCAACGTGTAGGTTTCATCATTGTT 60.278 40.000 0.00 0.00 0.00 2.83
4847 20860 3.756434 CCCAACGTGTAGGTTTCATCATT 59.244 43.478 0.00 0.00 0.00 2.57
4849 20862 2.551287 CCCCAACGTGTAGGTTTCATCA 60.551 50.000 0.00 0.00 0.00 3.07
4859 20872 5.999205 TCTTTATAACTCCCCAACGTGTA 57.001 39.130 0.00 0.00 0.00 2.90
4864 20877 6.885922 TCTAGCTTCTTTATAACTCCCCAAC 58.114 40.000 0.00 0.00 0.00 3.77
4877 20890 6.642707 AGCGTAGATACATCTAGCTTCTTT 57.357 37.500 13.13 0.00 39.02 2.52
4878 20891 7.747155 TTAGCGTAGATACATCTAGCTTCTT 57.253 36.000 19.25 6.81 40.69 2.52
4879 20892 7.931578 ATTAGCGTAGATACATCTAGCTTCT 57.068 36.000 19.25 9.62 40.69 2.85
4893 20906 6.073385 CGTTGTCCTCTACATATTAGCGTAGA 60.073 42.308 0.00 0.00 41.32 2.59
4894 20907 6.078479 CGTTGTCCTCTACATATTAGCGTAG 58.922 44.000 0.00 0.00 38.10 3.51
4896 20909 4.261489 CCGTTGTCCTCTACATATTAGCGT 60.261 45.833 0.00 0.00 38.10 5.07
4918 20931 2.401351 GATGAACGCTAACGGGTATCC 58.599 52.381 0.00 0.00 46.04 2.59
4931 20944 3.257561 CAGCGCGAGGGATGAACG 61.258 66.667 12.10 0.00 0.00 3.95
4939 20952 2.167861 GCTTTCTACCAGCGCGAGG 61.168 63.158 12.10 18.59 0.00 4.63
4942 20955 0.179215 CTTTGCTTTCTACCAGCGCG 60.179 55.000 0.00 0.00 40.45 6.86
4946 20959 4.020128 AGTCTACCCTTTGCTTTCTACCAG 60.020 45.833 0.00 0.00 0.00 4.00
4950 20963 4.591498 TGACAGTCTACCCTTTGCTTTCTA 59.409 41.667 1.31 0.00 0.00 2.10
4951 20964 3.391296 TGACAGTCTACCCTTTGCTTTCT 59.609 43.478 1.31 0.00 0.00 2.52
4953 20966 3.857157 TGACAGTCTACCCTTTGCTTT 57.143 42.857 1.31 0.00 0.00 3.51
4958 20971 1.066143 CCGCATGACAGTCTACCCTTT 60.066 52.381 0.00 0.00 0.00 3.11
4993 21006 0.807667 CTAGAGGTGGCACATGCGAC 60.808 60.000 20.82 10.23 46.89 5.19
4996 21009 2.772739 CACTAGAGGTGGCACATGC 58.227 57.895 20.82 7.72 44.52 4.06
5032 21045 2.726821 GATTGAGTTGGAGGCCATGAA 58.273 47.619 5.01 0.00 31.53 2.57
5036 21049 1.299648 CCGATTGAGTTGGAGGCCA 59.700 57.895 5.01 0.00 32.46 5.36
5037 21050 0.744771 GACCGATTGAGTTGGAGGCC 60.745 60.000 0.00 0.00 35.13 5.19
5038 21051 1.084370 CGACCGATTGAGTTGGAGGC 61.084 60.000 0.00 0.00 35.13 4.70
5044 21057 1.369091 GCCATGCGACCGATTGAGTT 61.369 55.000 0.00 0.00 0.00 3.01
5057 21070 2.046892 AGACACCGACAGCCATGC 60.047 61.111 0.00 0.00 0.00 4.06
5061 21074 3.044305 GCACAGACACCGACAGCC 61.044 66.667 0.00 0.00 0.00 4.85
5062 21075 3.044305 GGCACAGACACCGACAGC 61.044 66.667 0.00 0.00 0.00 4.40
5071 21084 0.741221 GTGATCCCTTCGGCACAGAC 60.741 60.000 0.00 0.00 0.00 3.51
5091 21104 9.050601 CCCTATGATGTAAATGTCTTCTTCTTC 57.949 37.037 0.00 0.00 0.00 2.87
5097 21110 8.682936 ACATTCCCTATGATGTAAATGTCTTC 57.317 34.615 0.00 0.00 37.69 2.87
5100 21113 6.147821 CCGACATTCCCTATGATGTAAATGTC 59.852 42.308 13.37 13.37 44.64 3.06
5105 21118 5.365605 AGAACCGACATTCCCTATGATGTAA 59.634 40.000 0.00 0.00 37.69 2.41
5112 21125 2.103263 GCTGAGAACCGACATTCCCTAT 59.897 50.000 0.00 0.00 0.00 2.57
5116 21129 1.084370 CCGCTGAGAACCGACATTCC 61.084 60.000 0.00 0.00 0.00 3.01
5118 21131 0.537188 ATCCGCTGAGAACCGACATT 59.463 50.000 0.00 0.00 0.00 2.71
5122 21135 0.103026 CATGATCCGCTGAGAACCGA 59.897 55.000 0.00 0.00 0.00 4.69
5132 21145 2.674380 GATGGGGGCATGATCCGC 60.674 66.667 13.27 13.27 38.24 5.54
5144 21157 1.525923 CAGCAGAGGAGTGGATGGG 59.474 63.158 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.