Multiple sequence alignment - TraesCS5A01G477900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G477900 chr5A 100.000 2709 0 0 1 2709 651733186 651735894 0.000000e+00 5003.0
1 TraesCS5A01G477900 chr5A 83.037 955 91 35 702 1637 651748627 651749529 0.000000e+00 800.0
2 TraesCS5A01G477900 chr5A 87.852 461 44 5 1072 1530 651788306 651788756 5.140000e-147 531.0
3 TraesCS5A01G477900 chr5A 89.171 434 25 13 1 415 706071053 706070623 3.090000e-144 521.0
4 TraesCS5A01G477900 chr5A 95.290 276 13 0 141 416 651717718 651717993 3.200000e-119 438.0
5 TraesCS5A01G477900 chr5A 93.609 266 16 1 143 408 706077423 706077159 1.950000e-106 396.0
6 TraesCS5A01G477900 chr5A 93.103 232 14 1 416 647 500624239 500624010 3.340000e-89 339.0
7 TraesCS5A01G477900 chr5A 79.108 426 75 13 1479 1893 651638898 651639320 5.710000e-72 281.0
8 TraesCS5A01G477900 chr5A 74.725 455 95 15 1935 2374 651639602 651640051 4.610000e-43 185.0
9 TraesCS5A01G477900 chr5A 84.071 113 7 3 718 819 651637679 651637791 6.170000e-17 99.0
10 TraesCS5A01G477900 chrUn 85.755 1404 112 29 649 2036 67240340 67241671 0.000000e+00 1404.0
11 TraesCS5A01G477900 chrUn 86.240 625 67 11 2086 2709 67241997 67242603 0.000000e+00 660.0
12 TraesCS5A01G477900 chr5D 85.389 965 106 21 958 1904 525253568 525254515 0.000000e+00 968.0
13 TraesCS5A01G477900 chr5D 84.957 811 97 17 832 1637 525305692 525306482 0.000000e+00 798.0
14 TraesCS5A01G477900 chr5D 80.933 1007 117 40 698 1648 525378156 525379143 0.000000e+00 726.0
15 TraesCS5A01G477900 chr5D 79.125 1006 131 49 693 1648 23863142 23864118 2.960000e-174 621.0
16 TraesCS5A01G477900 chr5D 86.389 529 57 9 1104 1620 525321855 525322380 5.060000e-157 564.0
17 TraesCS5A01G477900 chr5D 79.252 829 112 31 832 1620 525325419 525326227 8.590000e-145 523.0
18 TraesCS5A01G477900 chr5D 85.294 272 9 10 649 899 525252936 525253197 4.480000e-63 252.0
19 TraesCS5A01G477900 chr5D 87.255 204 24 2 2310 2513 525266147 525266348 5.830000e-57 231.0
20 TraesCS5A01G477900 chr5D 96.970 33 1 0 770 802 525305645 525305677 3.770000e-04 56.5
21 TraesCS5A01G477900 chr5B 84.172 815 94 24 832 1637 659625460 659626248 0.000000e+00 758.0
22 TraesCS5A01G477900 chr5B 86.213 544 57 10 1108 1636 659743611 659744151 8.410000e-160 573.0
23 TraesCS5A01G477900 chr5B 88.479 434 31 2 1 415 416548125 416547692 8.650000e-140 507.0
24 TraesCS5A01G477900 chr5B 82.948 563 55 21 1073 1620 659704392 659704928 1.140000e-128 470.0
25 TraesCS5A01G477900 chr5B 91.949 236 17 2 416 651 84937142 84937375 2.010000e-86 329.0
26 TraesCS5A01G477900 chr7B 90.227 440 18 4 1 415 679451283 679450844 3.940000e-153 551.0
27 TraesCS5A01G477900 chr7B 93.190 279 15 3 143 419 679491800 679491524 9.030000e-110 407.0
28 TraesCS5A01G477900 chr2D 87.816 435 31 4 1 416 174425544 174425975 8.720000e-135 490.0
29 TraesCS5A01G477900 chr2D 81.279 438 51 18 1 415 614392474 614392903 2.600000e-85 326.0
30 TraesCS5A01G477900 chr3D 84.439 437 46 9 1 415 415976469 415976905 6.980000e-111 411.0
31 TraesCS5A01G477900 chr3D 91.727 278 17 5 143 418 590437722 590437449 5.470000e-102 381.0
32 TraesCS5A01G477900 chr1D 82.313 441 41 24 1 415 408882178 408882607 5.550000e-92 348.0
33 TraesCS5A01G477900 chr1D 81.321 439 49 21 1 415 1835252 1835681 2.600000e-85 326.0
34 TraesCS5A01G477900 chr1D 79.043 439 46 24 1 415 346192210 346192626 2.680000e-65 259.0
35 TraesCS5A01G477900 chr1A 92.373 236 16 1 416 651 8600112 8599879 4.320000e-88 335.0
36 TraesCS5A01G477900 chr2A 92.672 232 15 1 416 647 690350824 690351053 1.550000e-87 333.0
37 TraesCS5A01G477900 chr7D 81.507 438 50 12 1 415 30263328 30263757 5.590000e-87 331.0
38 TraesCS5A01G477900 chr6D 91.949 236 17 1 416 651 365722619 365722852 2.010000e-86 329.0
39 TraesCS5A01G477900 chr6A 91.949 236 17 2 416 651 328478537 328478304 2.010000e-86 329.0
40 TraesCS5A01G477900 chr6A 92.241 232 16 1 416 647 615379269 615379498 7.230000e-86 327.0
41 TraesCS5A01G477900 chr3B 91.667 240 17 2 416 655 259369427 259369663 2.010000e-86 329.0
42 TraesCS5A01G477900 chr4A 92.208 231 14 2 417 647 483894993 483895219 9.360000e-85 324.0
43 TraesCS5A01G477900 chr3A 75.694 144 32 3 2169 2311 22620173 22620032 4.840000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G477900 chr5A 651733186 651735894 2708 False 5003.00 5003 100.0000 1 2709 1 chr5A.!!$F2 2708
1 TraesCS5A01G477900 chr5A 651748627 651749529 902 False 800.00 800 83.0370 702 1637 1 chr5A.!!$F3 935
2 TraesCS5A01G477900 chrUn 67240340 67242603 2263 False 1032.00 1404 85.9975 649 2709 2 chrUn.!!$F1 2060
3 TraesCS5A01G477900 chr5D 525378156 525379143 987 False 726.00 726 80.9330 698 1648 1 chr5D.!!$F3 950
4 TraesCS5A01G477900 chr5D 23863142 23864118 976 False 621.00 621 79.1250 693 1648 1 chr5D.!!$F1 955
5 TraesCS5A01G477900 chr5D 525252936 525254515 1579 False 610.00 968 85.3415 649 1904 2 chr5D.!!$F4 1255
6 TraesCS5A01G477900 chr5D 525321855 525326227 4372 False 543.50 564 82.8205 832 1620 2 chr5D.!!$F6 788
7 TraesCS5A01G477900 chr5D 525305645 525306482 837 False 427.25 798 90.9635 770 1637 2 chr5D.!!$F5 867
8 TraesCS5A01G477900 chr5B 659625460 659626248 788 False 758.00 758 84.1720 832 1637 1 chr5B.!!$F2 805
9 TraesCS5A01G477900 chr5B 659743611 659744151 540 False 573.00 573 86.2130 1108 1636 1 chr5B.!!$F4 528
10 TraesCS5A01G477900 chr5B 659704392 659704928 536 False 470.00 470 82.9480 1073 1620 1 chr5B.!!$F3 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.033504 AACGATGTGACGCCTCTTGT 59.966 50.0 0.0 0.0 36.7 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 5333 0.03601 ACAGCCTCGACATTCCCTTG 60.036 55.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.961265 TTCCTACATGAACATAAATAGTACGAG 57.039 33.333 0.00 0.00 0.00 4.18
39 40 9.346005 TCCTACATGAACATAAATAGTACGAGA 57.654 33.333 0.00 0.00 0.00 4.04
71 72 9.780413 GATTCTCAAAATTACAAGATCAAGGAC 57.220 33.333 0.00 0.00 0.00 3.85
72 73 8.924511 TTCTCAAAATTACAAGATCAAGGACT 57.075 30.769 0.00 0.00 0.00 3.85
76 77 9.958180 TCAAAATTACAAGATCAAGGACTATCA 57.042 29.630 0.00 0.00 0.00 2.15
81 82 9.829507 ATTACAAGATCAAGGACTATCAAGAAG 57.170 33.333 0.00 0.00 0.00 2.85
82 83 7.487822 ACAAGATCAAGGACTATCAAGAAGA 57.512 36.000 0.00 0.00 0.00 2.87
84 85 6.478512 AGATCAAGGACTATCAAGAAGACC 57.521 41.667 0.00 0.00 0.00 3.85
85 86 5.365314 AGATCAAGGACTATCAAGAAGACCC 59.635 44.000 0.00 0.00 30.23 4.46
86 87 4.425772 TCAAGGACTATCAAGAAGACCCA 58.574 43.478 0.00 0.00 30.23 4.51
87 88 4.844085 TCAAGGACTATCAAGAAGACCCAA 59.156 41.667 0.00 0.00 30.23 4.12
88 89 5.046304 TCAAGGACTATCAAGAAGACCCAAG 60.046 44.000 0.00 0.00 30.23 3.61
89 90 3.777522 AGGACTATCAAGAAGACCCAAGG 59.222 47.826 0.00 0.00 30.23 3.61
90 91 3.519913 GGACTATCAAGAAGACCCAAGGT 59.480 47.826 0.00 0.00 39.44 3.50
92 93 5.515008 GGACTATCAAGAAGACCCAAGGTTT 60.515 44.000 0.00 0.00 35.25 3.27
93 94 5.953571 ACTATCAAGAAGACCCAAGGTTTT 58.046 37.500 0.00 0.00 35.25 2.43
94 95 6.373759 ACTATCAAGAAGACCCAAGGTTTTT 58.626 36.000 0.00 0.00 35.25 1.94
95 96 5.535753 ATCAAGAAGACCCAAGGTTTTTG 57.464 39.130 0.00 0.00 35.25 2.44
96 97 4.605183 TCAAGAAGACCCAAGGTTTTTGA 58.395 39.130 0.00 0.00 35.25 2.69
97 98 5.208121 TCAAGAAGACCCAAGGTTTTTGAT 58.792 37.500 0.00 0.00 35.25 2.57
98 99 6.369629 TCAAGAAGACCCAAGGTTTTTGATA 58.630 36.000 0.00 0.00 35.25 2.15
99 100 6.264518 TCAAGAAGACCCAAGGTTTTTGATAC 59.735 38.462 0.00 0.00 35.25 2.24
100 101 5.953571 AGAAGACCCAAGGTTTTTGATACT 58.046 37.500 0.00 0.00 35.25 2.12
102 103 5.319043 AGACCCAAGGTTTTTGATACTCA 57.681 39.130 0.00 0.00 35.25 3.41
103 104 5.701224 AGACCCAAGGTTTTTGATACTCAA 58.299 37.500 0.00 0.00 35.25 3.02
104 105 5.770162 AGACCCAAGGTTTTTGATACTCAAG 59.230 40.000 0.00 0.00 35.08 3.02
105 106 5.701224 ACCCAAGGTTTTTGATACTCAAGA 58.299 37.500 0.00 0.00 32.43 3.02
106 107 6.314917 ACCCAAGGTTTTTGATACTCAAGAT 58.685 36.000 0.00 0.00 32.43 2.40
108 109 8.116026 ACCCAAGGTTTTTGATACTCAAGATAT 58.884 33.333 0.00 0.00 32.43 1.63
127 128 9.322776 CAAGATATATGAAGATTAAAACAGCGC 57.677 33.333 0.00 0.00 0.00 5.92
128 129 8.839310 AGATATATGAAGATTAAAACAGCGCT 57.161 30.769 2.64 2.64 0.00 5.92
131 132 4.404507 TGAAGATTAAAACAGCGCTGTC 57.595 40.909 40.60 27.00 44.13 3.51
132 133 3.188460 TGAAGATTAAAACAGCGCTGTCC 59.812 43.478 40.60 23.97 44.13 4.02
133 134 2.778299 AGATTAAAACAGCGCTGTCCA 58.222 42.857 40.60 25.76 44.13 4.02
134 135 3.146066 AGATTAAAACAGCGCTGTCCAA 58.854 40.909 40.60 31.27 44.13 3.53
135 136 3.189287 AGATTAAAACAGCGCTGTCCAAG 59.811 43.478 40.60 16.24 44.13 3.61
136 137 1.234821 TAAAACAGCGCTGTCCAAGG 58.765 50.000 40.60 15.44 44.13 3.61
137 138 1.455383 AAAACAGCGCTGTCCAAGGG 61.455 55.000 40.60 14.64 44.13 3.95
138 139 3.850098 AACAGCGCTGTCCAAGGGG 62.850 63.158 40.60 13.85 44.13 4.79
149 150 0.494551 TCCAAGGGGGAGTGTTAGGA 59.505 55.000 0.00 0.00 42.15 2.94
150 151 1.132332 TCCAAGGGGGAGTGTTAGGAA 60.132 52.381 0.00 0.00 42.15 3.36
151 152 1.923148 CCAAGGGGGAGTGTTAGGAAT 59.077 52.381 0.00 0.00 40.01 3.01
152 153 2.092375 CCAAGGGGGAGTGTTAGGAATC 60.092 54.545 0.00 0.00 40.01 2.52
153 154 2.846827 CAAGGGGGAGTGTTAGGAATCT 59.153 50.000 0.00 0.00 0.00 2.40
154 155 4.037927 CAAGGGGGAGTGTTAGGAATCTA 58.962 47.826 0.00 0.00 0.00 1.98
155 156 4.363546 AGGGGGAGTGTTAGGAATCTAA 57.636 45.455 0.00 0.00 33.43 2.10
156 157 4.909284 AGGGGGAGTGTTAGGAATCTAAT 58.091 43.478 0.00 0.00 37.74 1.73
157 158 6.051946 AGGGGGAGTGTTAGGAATCTAATA 57.948 41.667 0.00 0.00 37.74 0.98
159 160 5.845065 GGGGGAGTGTTAGGAATCTAATAGT 59.155 44.000 0.00 0.00 37.74 2.12
160 161 6.014413 GGGGGAGTGTTAGGAATCTAATAGTC 60.014 46.154 8.34 8.34 41.92 2.59
161 162 6.783482 GGGGAGTGTTAGGAATCTAATAGTCT 59.217 42.308 13.47 0.00 42.12 3.24
162 163 7.290481 GGGGAGTGTTAGGAATCTAATAGTCTT 59.710 40.741 13.47 0.00 42.12 3.01
163 164 9.364653 GGGAGTGTTAGGAATCTAATAGTCTTA 57.635 37.037 13.47 0.00 42.12 2.10
228 229 3.560636 AACCGATGGTTAGAATCCTGG 57.439 47.619 0.00 0.00 44.94 4.45
230 231 1.502231 CGATGGTTAGAATCCTGGCG 58.498 55.000 0.00 0.00 0.00 5.69
231 232 1.202533 CGATGGTTAGAATCCTGGCGT 60.203 52.381 0.00 0.00 0.00 5.68
232 233 2.741878 CGATGGTTAGAATCCTGGCGTT 60.742 50.000 0.00 0.00 0.00 4.84
233 234 2.107950 TGGTTAGAATCCTGGCGTTG 57.892 50.000 0.00 0.00 0.00 4.10
234 235 1.349688 TGGTTAGAATCCTGGCGTTGT 59.650 47.619 0.00 0.00 0.00 3.32
236 237 2.007608 GTTAGAATCCTGGCGTTGTCC 58.992 52.381 0.00 0.00 0.00 4.02
237 238 1.271856 TAGAATCCTGGCGTTGTCCA 58.728 50.000 0.00 0.00 34.42 4.02
259 260 3.340727 GCAGTACATAGCGAACCGT 57.659 52.632 0.00 0.00 0.00 4.83
262 263 2.602878 CAGTACATAGCGAACCGTTGT 58.397 47.619 0.00 0.00 0.00 3.32
263 264 2.597305 CAGTACATAGCGAACCGTTGTC 59.403 50.000 0.00 0.00 0.00 3.18
264 265 1.580704 GTACATAGCGAACCGTTGTCG 59.419 52.381 0.00 0.00 0.00 4.35
265 266 0.038892 ACATAGCGAACCGTTGTCGT 60.039 50.000 0.00 0.00 35.01 4.34
267 268 0.038892 ATAGCGAACCGTTGTCGTGT 60.039 50.000 0.00 0.00 35.01 4.49
268 269 0.248990 TAGCGAACCGTTGTCGTGTT 60.249 50.000 0.00 0.00 34.85 3.32
269 270 1.085501 AGCGAACCGTTGTCGTGTTT 61.086 50.000 0.00 0.00 33.32 2.83
270 271 0.247775 GCGAACCGTTGTCGTGTTTT 60.248 50.000 0.00 0.00 33.32 2.43
271 272 1.791196 GCGAACCGTTGTCGTGTTTTT 60.791 47.619 0.00 0.00 33.32 1.94
272 273 2.095875 CGAACCGTTGTCGTGTTTTTC 58.904 47.619 0.00 0.00 33.32 2.29
275 276 2.348660 ACCGTTGTCGTGTTTTTCTGA 58.651 42.857 0.00 0.00 35.01 3.27
276 277 2.743126 ACCGTTGTCGTGTTTTTCTGAA 59.257 40.909 0.00 0.00 35.01 3.02
278 279 3.095738 CGTTGTCGTGTTTTTCTGAACC 58.904 45.455 0.00 0.00 0.00 3.62
280 281 2.348660 TGTCGTGTTTTTCTGAACCGT 58.651 42.857 0.00 0.00 0.00 4.83
281 282 2.349275 TGTCGTGTTTTTCTGAACCGTC 59.651 45.455 0.00 0.00 0.00 4.79
284 285 0.658897 TGTTTTTCTGAACCGTCGCC 59.341 50.000 0.00 0.00 0.00 5.54
285 286 0.383860 GTTTTTCTGAACCGTCGCCG 60.384 55.000 0.00 0.00 0.00 6.46
286 287 2.108344 TTTTTCTGAACCGTCGCCGC 62.108 55.000 0.00 0.00 0.00 6.53
287 288 3.793775 TTTCTGAACCGTCGCCGCA 62.794 57.895 0.00 0.00 0.00 5.69
292 293 4.922026 AACCGTCGCCGCACCTTT 62.922 61.111 0.00 0.00 0.00 3.11
293 294 4.922026 ACCGTCGCCGCACCTTTT 62.922 61.111 0.00 0.00 0.00 2.27
295 296 3.041940 CGTCGCCGCACCTTTTCT 61.042 61.111 0.00 0.00 0.00 2.52
296 297 2.861006 GTCGCCGCACCTTTTCTC 59.139 61.111 0.00 0.00 0.00 2.87
297 298 1.959226 GTCGCCGCACCTTTTCTCA 60.959 57.895 0.00 0.00 0.00 3.27
298 299 1.227704 TCGCCGCACCTTTTCTCAA 60.228 52.632 0.00 0.00 0.00 3.02
300 301 1.082104 GCCGCACCTTTTCTCAACG 60.082 57.895 0.00 0.00 0.00 4.10
302 303 1.156736 CCGCACCTTTTCTCAACGAT 58.843 50.000 0.00 0.00 0.00 3.73
304 305 1.531149 CGCACCTTTTCTCAACGATGT 59.469 47.619 0.00 0.00 0.00 3.06
305 306 2.662791 CGCACCTTTTCTCAACGATGTG 60.663 50.000 0.00 0.00 0.00 3.21
306 307 2.548057 GCACCTTTTCTCAACGATGTGA 59.452 45.455 0.00 0.00 0.00 3.58
307 308 3.607078 GCACCTTTTCTCAACGATGTGAC 60.607 47.826 0.00 0.00 0.00 3.67
308 309 2.800544 ACCTTTTCTCAACGATGTGACG 59.199 45.455 0.00 0.00 39.31 4.35
310 311 1.144969 TTTCTCAACGATGTGACGCC 58.855 50.000 0.00 0.00 36.70 5.68
311 312 0.317160 TTCTCAACGATGTGACGCCT 59.683 50.000 0.00 0.00 36.70 5.52
312 313 0.109272 TCTCAACGATGTGACGCCTC 60.109 55.000 0.00 0.00 36.70 4.70
313 314 0.109086 CTCAACGATGTGACGCCTCT 60.109 55.000 0.00 0.00 36.70 3.69
314 315 0.317160 TCAACGATGTGACGCCTCTT 59.683 50.000 0.00 0.00 36.70 2.85
316 317 0.033504 AACGATGTGACGCCTCTTGT 59.966 50.000 0.00 0.00 36.70 3.16
317 318 0.885879 ACGATGTGACGCCTCTTGTA 59.114 50.000 0.00 0.00 36.70 2.41
318 319 1.271379 ACGATGTGACGCCTCTTGTAA 59.729 47.619 0.00 0.00 36.70 2.41
319 320 2.094182 ACGATGTGACGCCTCTTGTAAT 60.094 45.455 0.00 0.00 36.70 1.89
320 321 2.535984 CGATGTGACGCCTCTTGTAATC 59.464 50.000 0.00 0.00 0.00 1.75
322 323 1.542472 TGTGACGCCTCTTGTAATCGA 59.458 47.619 0.00 0.00 0.00 3.59
323 324 1.918609 GTGACGCCTCTTGTAATCGAC 59.081 52.381 0.00 0.00 0.00 4.20
326 327 0.525668 CGCCTCTTGTAATCGACGCT 60.526 55.000 0.00 0.00 0.00 5.07
328 329 1.736032 GCCTCTTGTAATCGACGCTGT 60.736 52.381 0.00 0.00 0.00 4.40
330 331 3.766151 CCTCTTGTAATCGACGCTGTAA 58.234 45.455 0.00 0.00 0.00 2.41
331 332 4.171005 CCTCTTGTAATCGACGCTGTAAA 58.829 43.478 0.00 0.00 0.00 2.01
332 333 4.031426 CCTCTTGTAATCGACGCTGTAAAC 59.969 45.833 0.00 0.00 0.00 2.01
334 335 5.165676 TCTTGTAATCGACGCTGTAAACAT 58.834 37.500 0.00 0.00 0.00 2.71
335 336 5.287752 TCTTGTAATCGACGCTGTAAACATC 59.712 40.000 0.00 0.00 0.00 3.06
336 337 3.861113 TGTAATCGACGCTGTAAACATCC 59.139 43.478 0.00 0.00 0.00 3.51
337 338 2.665649 ATCGACGCTGTAAACATCCA 57.334 45.000 0.00 0.00 0.00 3.41
338 339 2.665649 TCGACGCTGTAAACATCCAT 57.334 45.000 0.00 0.00 0.00 3.41
339 340 2.967362 TCGACGCTGTAAACATCCATT 58.033 42.857 0.00 0.00 0.00 3.16
342 343 3.242091 CGACGCTGTAAACATCCATTCAG 60.242 47.826 0.00 0.00 0.00 3.02
360 361 6.491062 CCATTCAGGACATATAAAAGCATGGA 59.509 38.462 0.00 0.00 41.22 3.41
361 362 7.177921 CCATTCAGGACATATAAAAGCATGGAT 59.822 37.037 0.00 0.00 41.22 3.41
362 363 7.514784 TTCAGGACATATAAAAGCATGGATG 57.485 36.000 0.00 0.00 0.00 3.51
363 364 6.840527 TCAGGACATATAAAAGCATGGATGA 58.159 36.000 0.00 0.00 0.00 2.92
364 365 7.289310 TCAGGACATATAAAAGCATGGATGAA 58.711 34.615 0.00 0.00 0.00 2.57
365 366 7.946219 TCAGGACATATAAAAGCATGGATGAAT 59.054 33.333 0.00 0.00 0.00 2.57
367 368 7.946219 AGGACATATAAAAGCATGGATGAATCA 59.054 33.333 0.00 0.00 0.00 2.57
368 369 8.579006 GGACATATAAAAGCATGGATGAATCAA 58.421 33.333 0.00 0.00 0.00 2.57
376 377 9.893634 AAAAGCATGGATGAATCAATCAATAAA 57.106 25.926 0.00 0.00 42.54 1.40
379 380 9.090103 AGCATGGATGAATCAATCAATAAAGAT 57.910 29.630 0.00 0.00 42.54 2.40
380 381 9.355215 GCATGGATGAATCAATCAATAAAGATC 57.645 33.333 0.00 0.00 42.54 2.75
383 384 9.636789 TGGATGAATCAATCAATAAAGATCACT 57.363 29.630 0.00 0.00 42.54 3.41
386 387 9.636789 ATGAATCAATCAATAAAGATCACTCCA 57.363 29.630 0.00 0.00 42.54 3.86
387 388 9.636789 TGAATCAATCAATAAAGATCACTCCAT 57.363 29.630 0.00 0.00 34.30 3.41
400 401 9.525826 AAAGATCACTCCATTTACTTCAATCTT 57.474 29.630 0.00 0.00 32.66 2.40
401 402 9.525826 AAGATCACTCCATTTACTTCAATCTTT 57.474 29.630 0.00 0.00 0.00 2.52
402 403 9.171877 AGATCACTCCATTTACTTCAATCTTTC 57.828 33.333 0.00 0.00 0.00 2.62
403 404 9.171877 GATCACTCCATTTACTTCAATCTTTCT 57.828 33.333 0.00 0.00 0.00 2.52
405 406 7.939039 TCACTCCATTTACTTCAATCTTTCTGT 59.061 33.333 0.00 0.00 0.00 3.41
406 407 8.571336 CACTCCATTTACTTCAATCTTTCTGTT 58.429 33.333 0.00 0.00 0.00 3.16
407 408 9.136323 ACTCCATTTACTTCAATCTTTCTGTTT 57.864 29.630 0.00 0.00 0.00 2.83
409 410 9.354673 TCCATTTACTTCAATCTTTCTGTTTCT 57.645 29.630 0.00 0.00 0.00 2.52
410 411 9.617975 CCATTTACTTCAATCTTTCTGTTTCTC 57.382 33.333 0.00 0.00 0.00 2.87
414 415 9.613428 TTACTTCAATCTTTCTGTTTCTCTTCA 57.387 29.630 0.00 0.00 0.00 3.02
415 416 7.924940 ACTTCAATCTTTCTGTTTCTCTTCAC 58.075 34.615 0.00 0.00 0.00 3.18
416 417 7.772757 ACTTCAATCTTTCTGTTTCTCTTCACT 59.227 33.333 0.00 0.00 0.00 3.41
417 418 8.511604 TTCAATCTTTCTGTTTCTCTTCACTT 57.488 30.769 0.00 0.00 0.00 3.16
419 420 9.265901 TCAATCTTTCTGTTTCTCTTCACTTAG 57.734 33.333 0.00 0.00 0.00 2.18
420 421 7.665561 ATCTTTCTGTTTCTCTTCACTTAGC 57.334 36.000 0.00 0.00 0.00 3.09
421 422 6.821388 TCTTTCTGTTTCTCTTCACTTAGCT 58.179 36.000 0.00 0.00 0.00 3.32
422 423 7.275920 TCTTTCTGTTTCTCTTCACTTAGCTT 58.724 34.615 0.00 0.00 0.00 3.74
424 425 9.213799 CTTTCTGTTTCTCTTCACTTAGCTTAT 57.786 33.333 0.00 0.00 0.00 1.73
425 426 8.539770 TTCTGTTTCTCTTCACTTAGCTTATG 57.460 34.615 0.00 0.00 0.00 1.90
426 427 7.099764 TCTGTTTCTCTTCACTTAGCTTATGG 58.900 38.462 0.00 0.00 0.00 2.74
427 428 6.769512 TGTTTCTCTTCACTTAGCTTATGGT 58.230 36.000 0.00 0.00 0.00 3.55
428 429 7.224297 TGTTTCTCTTCACTTAGCTTATGGTT 58.776 34.615 0.00 0.00 0.00 3.67
429 430 7.173218 TGTTTCTCTTCACTTAGCTTATGGTTG 59.827 37.037 0.00 0.00 0.00 3.77
430 431 5.178797 TCTCTTCACTTAGCTTATGGTTGC 58.821 41.667 0.00 0.00 0.00 4.17
431 432 5.046304 TCTCTTCACTTAGCTTATGGTTGCT 60.046 40.000 0.00 0.00 42.67 3.91
432 433 6.154534 TCTCTTCACTTAGCTTATGGTTGCTA 59.845 38.462 0.00 0.00 40.35 3.49
433 434 6.707290 TCTTCACTTAGCTTATGGTTGCTAA 58.293 36.000 0.00 7.14 45.78 3.09
439 440 2.802256 GCTTATGGTTGCTAAGCTTGC 58.198 47.619 9.86 11.34 44.88 4.01
440 441 2.424956 GCTTATGGTTGCTAAGCTTGCT 59.575 45.455 9.86 0.00 44.88 3.91
441 442 3.119352 GCTTATGGTTGCTAAGCTTGCTT 60.119 43.478 9.86 12.65 44.88 3.91
443 444 1.979855 TGGTTGCTAAGCTTGCTTCA 58.020 45.000 9.86 2.06 0.00 3.02
444 445 2.517959 TGGTTGCTAAGCTTGCTTCAT 58.482 42.857 9.86 0.00 0.00 2.57
446 447 3.321682 TGGTTGCTAAGCTTGCTTCATTT 59.678 39.130 9.86 0.00 0.00 2.32
447 448 4.522405 TGGTTGCTAAGCTTGCTTCATTTA 59.478 37.500 9.86 0.00 0.00 1.40
448 449 5.010516 TGGTTGCTAAGCTTGCTTCATTTAA 59.989 36.000 9.86 0.00 0.00 1.52
450 451 6.035327 GGTTGCTAAGCTTGCTTCATTTAATG 59.965 38.462 9.86 0.00 0.00 1.90
451 452 6.513806 TGCTAAGCTTGCTTCATTTAATGA 57.486 33.333 9.86 3.20 37.55 2.57
452 453 7.104043 TGCTAAGCTTGCTTCATTTAATGAT 57.896 32.000 9.86 0.00 39.39 2.45
453 454 7.549839 TGCTAAGCTTGCTTCATTTAATGATT 58.450 30.769 9.86 1.25 39.39 2.57
454 455 8.036575 TGCTAAGCTTGCTTCATTTAATGATTT 58.963 29.630 9.86 0.00 39.39 2.17
455 456 9.520204 GCTAAGCTTGCTTCATTTAATGATTTA 57.480 29.630 9.86 0.00 39.39 1.40
483 484 7.687941 ACTAAAGTTCTTCATGTATTGGTGG 57.312 36.000 0.00 0.00 0.00 4.61
486 487 3.010584 AGTTCTTCATGTATTGGTGGGCT 59.989 43.478 0.00 0.00 0.00 5.19
487 488 3.281727 TCTTCATGTATTGGTGGGCTC 57.718 47.619 0.00 0.00 0.00 4.70
490 491 0.552848 CATGTATTGGTGGGCTCCCT 59.447 55.000 6.50 0.00 36.94 4.20
491 492 1.063717 CATGTATTGGTGGGCTCCCTT 60.064 52.381 6.50 0.00 36.94 3.95
493 494 0.919710 GTATTGGTGGGCTCCCTTCT 59.080 55.000 6.50 0.00 36.94 2.85
494 495 1.285078 GTATTGGTGGGCTCCCTTCTT 59.715 52.381 6.50 0.00 36.94 2.52
495 496 0.786435 ATTGGTGGGCTCCCTTCTTT 59.214 50.000 6.50 0.00 36.94 2.52
496 497 0.560688 TTGGTGGGCTCCCTTCTTTT 59.439 50.000 6.50 0.00 36.94 2.27
497 498 1.451449 TGGTGGGCTCCCTTCTTTTA 58.549 50.000 6.50 0.00 36.94 1.52
498 499 1.783979 TGGTGGGCTCCCTTCTTTTAA 59.216 47.619 6.50 0.00 36.94 1.52
499 500 2.178106 TGGTGGGCTCCCTTCTTTTAAA 59.822 45.455 6.50 0.00 36.94 1.52
500 501 3.181412 TGGTGGGCTCCCTTCTTTTAAAT 60.181 43.478 6.50 0.00 36.94 1.40
501 502 3.195610 GGTGGGCTCCCTTCTTTTAAATG 59.804 47.826 6.50 0.00 36.94 2.32
502 503 3.832490 GTGGGCTCCCTTCTTTTAAATGT 59.168 43.478 6.50 0.00 36.94 2.71
504 505 4.904853 TGGGCTCCCTTCTTTTAAATGTTT 59.095 37.500 6.50 0.00 36.94 2.83
506 507 5.700832 GGGCTCCCTTCTTTTAAATGTTTTG 59.299 40.000 0.00 0.00 0.00 2.44
507 508 5.179368 GGCTCCCTTCTTTTAAATGTTTTGC 59.821 40.000 1.46 0.00 0.00 3.68
510 511 7.604657 TCCCTTCTTTTAAATGTTTTGCCTA 57.395 32.000 1.46 0.00 0.00 3.93
512 513 6.873605 CCCTTCTTTTAAATGTTTTGCCTAGG 59.126 38.462 3.67 3.67 0.00 3.02
513 514 7.441836 CCTTCTTTTAAATGTTTTGCCTAGGT 58.558 34.615 11.31 0.00 0.00 3.08
514 515 7.931407 CCTTCTTTTAAATGTTTTGCCTAGGTT 59.069 33.333 11.31 0.00 0.00 3.50
515 516 8.880878 TTCTTTTAAATGTTTTGCCTAGGTTC 57.119 30.769 11.31 0.00 0.00 3.62
516 517 8.012957 TCTTTTAAATGTTTTGCCTAGGTTCA 57.987 30.769 11.31 0.00 0.00 3.18
517 518 7.923878 TCTTTTAAATGTTTTGCCTAGGTTCAC 59.076 33.333 11.31 3.25 0.00 3.18
518 519 3.915437 AATGTTTTGCCTAGGTTCACG 57.085 42.857 11.31 0.00 0.00 4.35
519 520 0.948678 TGTTTTGCCTAGGTTCACGC 59.051 50.000 11.31 0.00 0.00 5.34
520 521 0.110373 GTTTTGCCTAGGTTCACGCG 60.110 55.000 11.31 3.53 0.00 6.01
521 522 1.847890 TTTTGCCTAGGTTCACGCGC 61.848 55.000 11.31 0.00 0.00 6.86
522 523 2.725203 TTTGCCTAGGTTCACGCGCT 62.725 55.000 11.31 0.00 0.00 5.92
526 527 1.146358 CCTAGGTTCACGCGCTTAGC 61.146 60.000 5.73 0.23 43.95 3.09
540 541 3.751621 CGCTTAGCATTGGTTCTTTCTG 58.248 45.455 4.70 0.00 0.00 3.02
541 542 3.426695 CGCTTAGCATTGGTTCTTTCTGG 60.427 47.826 4.70 0.00 0.00 3.86
542 543 3.119352 GCTTAGCATTGGTTCTTTCTGGG 60.119 47.826 0.00 0.00 0.00 4.45
543 544 2.978156 AGCATTGGTTCTTTCTGGGA 57.022 45.000 0.00 0.00 0.00 4.37
544 545 3.463048 AGCATTGGTTCTTTCTGGGAT 57.537 42.857 0.00 0.00 0.00 3.85
545 546 3.359950 AGCATTGGTTCTTTCTGGGATC 58.640 45.455 0.00 0.00 0.00 3.36
546 547 3.091545 GCATTGGTTCTTTCTGGGATCA 58.908 45.455 0.00 0.00 0.00 2.92
548 549 2.879103 TGGTTCTTTCTGGGATCACC 57.121 50.000 0.00 0.00 40.81 4.02
550 551 2.224769 TGGTTCTTTCTGGGATCACCAC 60.225 50.000 0.00 0.00 46.80 4.16
551 552 2.224769 GGTTCTTTCTGGGATCACCACA 60.225 50.000 0.00 0.00 46.80 4.17
552 553 2.814336 GTTCTTTCTGGGATCACCACAC 59.186 50.000 0.00 0.00 46.80 3.82
553 554 1.351017 TCTTTCTGGGATCACCACACC 59.649 52.381 0.00 0.00 46.80 4.16
554 555 0.404040 TTTCTGGGATCACCACACCC 59.596 55.000 0.00 0.00 46.80 4.61
555 556 0.770166 TTCTGGGATCACCACACCCA 60.770 55.000 0.00 0.00 46.80 4.51
558 559 0.549902 TGGGATCACCACACCCATCT 60.550 55.000 0.00 0.00 46.80 2.90
559 560 0.181350 GGGATCACCACACCCATCTC 59.819 60.000 0.00 0.00 42.81 2.75
560 561 1.207791 GGATCACCACACCCATCTCT 58.792 55.000 0.00 0.00 35.97 3.10
561 562 1.139853 GGATCACCACACCCATCTCTC 59.860 57.143 0.00 0.00 35.97 3.20
562 563 2.114616 GATCACCACACCCATCTCTCT 58.885 52.381 0.00 0.00 0.00 3.10
563 564 1.561643 TCACCACACCCATCTCTCTC 58.438 55.000 0.00 0.00 0.00 3.20
564 565 0.539051 CACCACACCCATCTCTCTCC 59.461 60.000 0.00 0.00 0.00 3.71
565 566 0.415429 ACCACACCCATCTCTCTCCT 59.585 55.000 0.00 0.00 0.00 3.69
566 567 1.118838 CCACACCCATCTCTCTCCTC 58.881 60.000 0.00 0.00 0.00 3.71
567 568 1.342874 CCACACCCATCTCTCTCCTCT 60.343 57.143 0.00 0.00 0.00 3.69
568 569 2.465813 CACACCCATCTCTCTCCTCTT 58.534 52.381 0.00 0.00 0.00 2.85
573 574 6.325028 CACACCCATCTCTCTCCTCTTAAATA 59.675 42.308 0.00 0.00 0.00 1.40
574 575 6.903534 ACACCCATCTCTCTCCTCTTAAATAA 59.096 38.462 0.00 0.00 0.00 1.40
575 576 7.147637 ACACCCATCTCTCTCCTCTTAAATAAC 60.148 40.741 0.00 0.00 0.00 1.89
576 577 7.070571 CACCCATCTCTCTCCTCTTAAATAACT 59.929 40.741 0.00 0.00 0.00 2.24
577 578 7.625682 ACCCATCTCTCTCCTCTTAAATAACTT 59.374 37.037 0.00 0.00 0.00 2.66
578 579 9.148879 CCCATCTCTCTCCTCTTAAATAACTTA 57.851 37.037 0.00 0.00 0.00 2.24
615 616 6.817765 TTTTTGCCTACATGGAAGACTTAG 57.182 37.500 0.00 0.00 38.35 2.18
617 618 2.837591 TGCCTACATGGAAGACTTAGCA 59.162 45.455 0.00 0.00 38.35 3.49
618 619 3.198872 GCCTACATGGAAGACTTAGCAC 58.801 50.000 0.00 0.00 38.35 4.40
620 621 3.452627 CCTACATGGAAGACTTAGCACCT 59.547 47.826 0.00 0.00 38.35 4.00
622 623 2.639839 ACATGGAAGACTTAGCACCTGT 59.360 45.455 0.00 0.00 0.00 4.00
623 624 3.838317 ACATGGAAGACTTAGCACCTGTA 59.162 43.478 0.00 0.00 0.00 2.74
625 626 3.236047 TGGAAGACTTAGCACCTGTACA 58.764 45.455 0.00 0.00 0.00 2.90
626 627 3.644265 TGGAAGACTTAGCACCTGTACAA 59.356 43.478 0.00 0.00 0.00 2.41
627 628 4.246458 GGAAGACTTAGCACCTGTACAAG 58.754 47.826 0.00 0.00 0.00 3.16
640 641 2.489329 CTGTACAAGGTGAAGCATTGGG 59.511 50.000 0.00 0.00 42.57 4.12
643 644 1.180029 CAAGGTGAAGCATTGGGAGG 58.820 55.000 0.00 0.00 35.45 4.30
645 646 1.380380 GGTGAAGCATTGGGAGGGG 60.380 63.158 0.00 0.00 0.00 4.79
646 647 2.054453 GTGAAGCATTGGGAGGGGC 61.054 63.158 0.00 0.00 0.00 5.80
762 763 1.095228 CCACTCTGCACCACACGTTT 61.095 55.000 0.00 0.00 0.00 3.60
828 841 9.890629 ATTCGAGCTATCTGCCAAAATAATATA 57.109 29.630 0.00 0.00 44.23 0.86
829 842 9.890629 TTCGAGCTATCTGCCAAAATAATATAT 57.109 29.630 0.00 0.00 44.23 0.86
873 3701 2.435938 TGGCTTCCGACGATTGGC 60.436 61.111 0.00 0.00 0.00 4.52
912 3744 2.440247 CAAGCCGGATCCCCAACC 60.440 66.667 5.05 0.00 0.00 3.77
916 3748 2.690881 CCGGATCCCCAACCTGGA 60.691 66.667 6.06 0.00 40.96 3.86
951 3783 4.764336 CGGCAGCAACACGCATGG 62.764 66.667 0.00 0.00 46.13 3.66
1023 4194 1.120530 TCCATTCTTCCTCCTACCGC 58.879 55.000 0.00 0.00 0.00 5.68
1026 4197 1.327690 ATTCTTCCTCCTACCGCGCA 61.328 55.000 8.75 0.00 0.00 6.09
1041 4220 0.784778 GCGCACTCACAGAACTACAC 59.215 55.000 0.30 0.00 0.00 2.90
1052 4231 3.064820 ACAGAACTACACCAACGCAAAAG 59.935 43.478 0.00 0.00 0.00 2.27
1061 4240 2.127251 CCAACGCAAAAGAAAAGAGCC 58.873 47.619 0.00 0.00 0.00 4.70
1062 4241 1.780860 CAACGCAAAAGAAAAGAGCCG 59.219 47.619 0.00 0.00 0.00 5.52
1063 4242 1.021968 ACGCAAAAGAAAAGAGCCGT 58.978 45.000 0.00 0.00 0.00 5.68
1184 4384 0.407528 TCTCCCTCAGCACAGACTCT 59.592 55.000 0.00 0.00 0.00 3.24
1197 4397 1.225691 GACTCTTCGACGACGTCCG 60.226 63.158 21.63 16.15 45.44 4.79
1227 4427 4.135493 GCAACTCGCTCGGTTCGC 62.135 66.667 0.00 0.00 37.77 4.70
1337 4561 1.446272 CTTCGAGACGTTCCAGGCC 60.446 63.158 0.00 0.00 0.00 5.19
1627 4878 1.799548 GCTGTTCGTCTAGCCTGCTAC 60.800 57.143 0.00 0.00 33.89 3.58
1656 4908 8.617809 GGATCTCTCAGTTTCTTACTACAGTAG 58.382 40.741 6.00 6.00 34.56 2.57
1657 4909 9.169592 GATCTCTCAGTTTCTTACTACAGTAGT 57.830 37.037 17.51 17.51 42.68 2.73
1672 4924 8.834004 ACTACAGTAGTATAACAATCCAGGAA 57.166 34.615 11.84 0.00 37.23 3.36
1684 4943 4.635765 ACAATCCAGGAATTGTACATGTCG 59.364 41.667 0.00 0.00 45.61 4.35
1692 4951 7.148323 CCAGGAATTGTACATGTCGTTTGAATA 60.148 37.037 0.00 0.00 0.00 1.75
1718 4977 8.527567 AGATAGGTTACGATAGAGTACGTTAC 57.472 38.462 0.00 0.00 42.61 2.50
1766 5028 0.796312 TTTGCTCTGAATCGGTTCGC 59.204 50.000 3.55 1.80 37.15 4.70
1880 5146 9.495754 GCACTCAGATTGTTTTTCTATGAATAC 57.504 33.333 0.00 0.00 0.00 1.89
1893 5159 7.956420 TTCTATGAATACGTTGTTGTTCACT 57.044 32.000 0.00 0.00 33.85 3.41
1896 5162 3.623510 TGAATACGTTGTTGTTCACTGCA 59.376 39.130 0.00 0.00 0.00 4.41
1900 5166 3.434637 ACGTTGTTGTTCACTGCAATTC 58.565 40.909 0.00 0.00 0.00 2.17
1905 5171 6.519761 CGTTGTTGTTCACTGCAATTCTATAC 59.480 38.462 0.00 0.00 0.00 1.47
1907 5173 5.121611 TGTTGTTCACTGCAATTCTATACGG 59.878 40.000 0.00 0.00 0.00 4.02
1908 5174 5.079689 TGTTCACTGCAATTCTATACGGA 57.920 39.130 0.00 0.00 0.00 4.69
1909 5175 5.670485 TGTTCACTGCAATTCTATACGGAT 58.330 37.500 0.00 0.00 0.00 4.18
1910 5176 5.753438 TGTTCACTGCAATTCTATACGGATC 59.247 40.000 0.00 0.00 0.00 3.36
1927 5193 4.935808 ACGGATCACAAGTCTAATTTGGAC 59.064 41.667 4.84 4.84 0.00 4.02
1951 5217 8.601845 ACCCTAAATTTGTAAAATTCTGCAAC 57.398 30.769 0.00 0.00 0.00 4.17
1974 5240 7.907214 ACATAAGCTACCTTCACAACTTAAG 57.093 36.000 0.00 0.00 32.47 1.85
1998 5264 1.783140 GTCTCAACGTTGACGGTACAC 59.217 52.381 26.53 12.12 44.95 2.90
2005 5271 2.295349 ACGTTGACGGTACACTGATTCT 59.705 45.455 8.52 0.00 44.95 2.40
2016 5282 1.135575 CACTGATTCTTTTGCTCGCCC 60.136 52.381 0.00 0.00 0.00 6.13
2022 5288 0.319083 TCTTTTGCTCGCCCGAGTTA 59.681 50.000 17.75 6.20 43.70 2.24
2027 5293 1.518792 GCTCGCCCGAGTTAAGGAC 60.519 63.158 17.75 0.00 43.70 3.85
2034 5300 1.226603 CGAGTTAAGGACGAGGGCG 60.227 63.158 0.00 0.00 44.79 6.13
2035 5301 1.518792 GAGTTAAGGACGAGGGCGC 60.519 63.158 0.00 0.00 42.48 6.53
2036 5302 2.884207 GTTAAGGACGAGGGCGCG 60.884 66.667 0.00 0.00 42.48 6.86
2037 5303 4.137872 TTAAGGACGAGGGCGCGG 62.138 66.667 8.83 0.00 42.48 6.46
2084 5626 1.201429 ACCAAGGGAATGTCGAGGCT 61.201 55.000 0.00 0.00 0.00 4.58
2098 5655 1.069358 CGAGGCTGTATCCCCTTCTTC 59.931 57.143 0.00 0.00 0.00 2.87
2107 5664 1.306226 CCCCTTCTTCCTCCTCGGT 60.306 63.158 0.00 0.00 0.00 4.69
2122 5679 1.176619 TCGGTCTTGCTTCCTCGTCA 61.177 55.000 0.00 0.00 0.00 4.35
2130 5687 0.179097 GCTTCCTCGTCATCCTCCAC 60.179 60.000 0.00 0.00 0.00 4.02
2150 5707 0.107508 CACAATGGACATCTCCCGCT 60.108 55.000 0.00 0.00 35.34 5.52
2151 5708 0.179000 ACAATGGACATCTCCCGCTC 59.821 55.000 0.00 0.00 35.34 5.03
2155 5712 2.764128 GACATCTCCCGCTCCCCA 60.764 66.667 0.00 0.00 0.00 4.96
2179 5736 1.332144 ATGCCAATGCCATCACCACC 61.332 55.000 0.00 0.00 36.33 4.61
2186 5743 4.343323 CCATCACCACCGCCACCA 62.343 66.667 0.00 0.00 0.00 4.17
2196 5753 2.187946 CGCCACCACATCCTCCTC 59.812 66.667 0.00 0.00 0.00 3.71
2197 5754 2.592308 GCCACCACATCCTCCTCC 59.408 66.667 0.00 0.00 0.00 4.30
2204 5761 1.760086 ACATCCTCCTCCGAGCCAG 60.760 63.158 0.00 0.00 34.49 4.85
2226 5783 1.888018 GTTCCCGACCACGAGATCA 59.112 57.895 0.00 0.00 42.66 2.92
2233 5790 3.127203 CCCGACCACGAGATCAGTATATC 59.873 52.174 0.00 0.00 42.66 1.63
2242 5799 4.321304 CGAGATCAGTATATCGCCCACTTT 60.321 45.833 0.00 0.00 39.68 2.66
2245 5802 4.481368 TCAGTATATCGCCCACTTTTGT 57.519 40.909 0.00 0.00 0.00 2.83
2247 5804 4.081365 TCAGTATATCGCCCACTTTTGTCA 60.081 41.667 0.00 0.00 0.00 3.58
2257 5814 2.421388 CCACTTTTGTCACTGGACTGGA 60.421 50.000 0.00 0.00 44.61 3.86
2260 5817 3.392616 ACTTTTGTCACTGGACTGGATCT 59.607 43.478 0.00 0.00 44.61 2.75
2263 5820 5.344743 TTTGTCACTGGACTGGATCTATC 57.655 43.478 0.00 0.00 44.61 2.08
2271 5828 2.416162 GGACTGGATCTATCGATTCCGC 60.416 54.545 1.71 0.00 35.37 5.54
2272 5829 1.546476 ACTGGATCTATCGATTCCGCC 59.454 52.381 1.71 1.56 35.37 6.13
2276 5833 1.135333 GATCTATCGATTCCGCCTCCC 59.865 57.143 1.71 0.00 35.37 4.30
2318 5875 2.222678 TCTATCGGATACTTCGTCGTGC 59.777 50.000 0.00 0.00 0.00 5.34
2327 5884 2.607187 ACTTCGTCGTGCATTAGGAAG 58.393 47.619 22.09 22.09 41.24 3.46
2348 5905 2.836262 CAGTCATGCCTCCTTCAGATC 58.164 52.381 0.00 0.00 0.00 2.75
2350 5907 0.755079 TCATGCCTCCTTCAGATCGG 59.245 55.000 0.00 0.00 0.00 4.18
2369 5926 3.870633 GGTCAACTACCTAGTCACCAG 57.129 52.381 8.01 0.00 45.75 4.00
2370 5927 2.094130 GGTCAACTACCTAGTCACCAGC 60.094 54.545 8.01 0.00 45.75 4.85
2373 5930 3.447586 TCAACTACCTAGTCACCAGCATC 59.552 47.826 0.00 0.00 34.99 3.91
2398 5955 2.438614 TGGCTAGCTCGCTCGAGT 60.439 61.111 15.72 9.56 43.70 4.18
2415 5972 1.871039 GAGTTTGCAAACCACGAGCTA 59.129 47.619 33.09 0.00 39.71 3.32
2443 6000 2.229792 GTGTTCTGGCCAACTTCATCA 58.770 47.619 7.01 0.00 0.00 3.07
2451 6008 2.827921 GGCCAACTTCATCATGTTTCCT 59.172 45.455 0.00 0.00 0.00 3.36
2453 6010 4.488879 GCCAACTTCATCATGTTTCCTTC 58.511 43.478 0.00 0.00 0.00 3.46
2455 6012 4.768968 CCAACTTCATCATGTTTCCTTCCT 59.231 41.667 0.00 0.00 0.00 3.36
2459 6016 1.402968 CATCATGTTTCCTTCCTGCGG 59.597 52.381 0.00 0.00 0.00 5.69
2503 6060 2.265739 GCCATCGAGACCAGCACA 59.734 61.111 0.00 0.00 0.00 4.57
2515 6072 0.749049 CCAGCACAGATCGGAGATCA 59.251 55.000 11.94 0.00 45.12 2.92
2520 6077 1.408340 CACAGATCGGAGATCAGCAGT 59.592 52.381 11.94 3.17 45.12 4.40
2521 6078 1.408340 ACAGATCGGAGATCAGCAGTG 59.592 52.381 11.94 4.29 45.12 3.66
2526 6083 0.244721 CGGAGATCAGCAGTGTCACA 59.755 55.000 5.62 0.00 0.00 3.58
2527 6084 1.134877 CGGAGATCAGCAGTGTCACAT 60.135 52.381 5.62 0.00 0.00 3.21
2528 6085 2.676176 CGGAGATCAGCAGTGTCACATT 60.676 50.000 5.62 0.00 0.00 2.71
2529 6086 2.676839 GGAGATCAGCAGTGTCACATTG 59.323 50.000 5.62 0.00 0.00 2.82
2530 6087 3.593096 GAGATCAGCAGTGTCACATTGA 58.407 45.455 4.11 6.19 0.00 2.57
2531 6088 3.597255 AGATCAGCAGTGTCACATTGAG 58.403 45.455 4.11 0.00 0.00 3.02
2533 6090 1.071228 TCAGCAGTGTCACATTGAGCT 59.929 47.619 4.11 3.69 0.00 4.09
2535 6092 3.069289 CAGCAGTGTCACATTGAGCTTA 58.931 45.455 4.11 0.00 0.00 3.09
2536 6093 3.499537 CAGCAGTGTCACATTGAGCTTAA 59.500 43.478 4.11 0.00 0.00 1.85
2538 6095 3.120060 GCAGTGTCACATTGAGCTTAAGG 60.120 47.826 4.11 0.86 0.00 2.69
2539 6096 3.438087 CAGTGTCACATTGAGCTTAAGGG 59.562 47.826 7.83 0.00 0.00 3.95
2540 6097 2.749621 GTGTCACATTGAGCTTAAGGGG 59.250 50.000 7.83 3.09 0.00 4.79
2541 6098 2.642311 TGTCACATTGAGCTTAAGGGGA 59.358 45.455 3.44 3.44 0.00 4.81
2545 6102 3.313526 CACATTGAGCTTAAGGGGAATCG 59.686 47.826 7.83 0.00 0.00 3.34
2546 6103 3.054361 ACATTGAGCTTAAGGGGAATCGT 60.054 43.478 7.83 0.00 0.00 3.73
2547 6104 2.981859 TGAGCTTAAGGGGAATCGTC 57.018 50.000 4.29 0.00 0.00 4.20
2548 6105 2.467880 TGAGCTTAAGGGGAATCGTCT 58.532 47.619 4.29 0.00 0.00 4.18
2549 6106 2.168521 TGAGCTTAAGGGGAATCGTCTG 59.831 50.000 4.29 0.00 0.00 3.51
2550 6107 1.486726 AGCTTAAGGGGAATCGTCTGG 59.513 52.381 4.29 0.00 0.00 3.86
2551 6108 1.954927 CTTAAGGGGAATCGTCTGGC 58.045 55.000 0.00 0.00 0.00 4.85
2552 6109 1.486726 CTTAAGGGGAATCGTCTGGCT 59.513 52.381 0.00 0.00 0.00 4.75
2553 6110 1.580059 TAAGGGGAATCGTCTGGCTT 58.420 50.000 0.00 0.00 0.00 4.35
2554 6111 0.253327 AAGGGGAATCGTCTGGCTTC 59.747 55.000 0.00 0.00 0.00 3.86
2555 6112 0.618968 AGGGGAATCGTCTGGCTTCT 60.619 55.000 0.00 0.00 0.00 2.85
2556 6113 0.179070 GGGGAATCGTCTGGCTTCTC 60.179 60.000 0.00 0.00 0.00 2.87
2557 6114 0.827368 GGGAATCGTCTGGCTTCTCT 59.173 55.000 0.00 0.00 0.00 3.10
2558 6115 1.202475 GGGAATCGTCTGGCTTCTCTC 60.202 57.143 0.00 0.00 0.00 3.20
2559 6116 1.754226 GGAATCGTCTGGCTTCTCTCT 59.246 52.381 0.00 0.00 0.00 3.10
2560 6117 2.952978 GGAATCGTCTGGCTTCTCTCTA 59.047 50.000 0.00 0.00 0.00 2.43
2561 6118 3.572255 GGAATCGTCTGGCTTCTCTCTAT 59.428 47.826 0.00 0.00 0.00 1.98
2564 6121 5.606348 ATCGTCTGGCTTCTCTCTATTTT 57.394 39.130 0.00 0.00 0.00 1.82
2570 6127 4.442706 TGGCTTCTCTCTATTTTTAGCGG 58.557 43.478 0.00 0.00 0.00 5.52
2585 6142 0.254178 AGCGGAGATGTGGAAATGCT 59.746 50.000 0.00 0.00 0.00 3.79
2607 6164 3.628280 GAGCGAACCGAAGAGCCGT 62.628 63.158 0.00 0.00 0.00 5.68
2650 6207 2.401583 TCATGGCGAGTAAATGCAGT 57.598 45.000 0.00 0.00 0.00 4.40
2651 6208 2.710377 TCATGGCGAGTAAATGCAGTT 58.290 42.857 4.23 4.23 0.00 3.16
2665 6222 7.962918 AGTAAATGCAGTTTCGATAATGACAAC 59.037 33.333 4.05 0.00 0.00 3.32
2696 6253 0.692476 CACCACCACCTCCATTCTGA 59.308 55.000 0.00 0.00 0.00 3.27
2705 6262 2.036475 ACCTCCATTCTGATTCGATCCG 59.964 50.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.961265 CTCGTACTATTTATGTTCATGTAGGAA 57.039 33.333 0.00 0.00 0.00 3.36
13 14 9.346005 TCTCGTACTATTTATGTTCATGTAGGA 57.654 33.333 0.00 0.00 0.00 2.94
44 45 9.745018 TCCTTGATCTTGTAATTTTGAGAATCT 57.255 29.630 0.00 0.00 34.92 2.40
45 46 9.780413 GTCCTTGATCTTGTAATTTTGAGAATC 57.220 33.333 0.00 0.00 0.00 2.52
46 47 9.525826 AGTCCTTGATCTTGTAATTTTGAGAAT 57.474 29.630 0.00 0.00 0.00 2.40
55 56 9.829507 CTTCTTGATAGTCCTTGATCTTGTAAT 57.170 33.333 0.00 0.00 0.00 1.89
57 58 8.470805 GTCTTCTTGATAGTCCTTGATCTTGTA 58.529 37.037 0.00 0.00 0.00 2.41
58 59 7.327214 GTCTTCTTGATAGTCCTTGATCTTGT 58.673 38.462 0.00 0.00 0.00 3.16
60 61 6.126911 GGGTCTTCTTGATAGTCCTTGATCTT 60.127 42.308 0.00 0.00 0.00 2.40
61 62 5.365314 GGGTCTTCTTGATAGTCCTTGATCT 59.635 44.000 0.00 0.00 0.00 2.75
62 63 5.129485 TGGGTCTTCTTGATAGTCCTTGATC 59.871 44.000 0.00 0.00 0.00 2.92
63 64 5.032846 TGGGTCTTCTTGATAGTCCTTGAT 58.967 41.667 0.00 0.00 0.00 2.57
66 67 4.226168 CCTTGGGTCTTCTTGATAGTCCTT 59.774 45.833 0.00 0.00 0.00 3.36
67 68 3.777522 CCTTGGGTCTTCTTGATAGTCCT 59.222 47.826 0.00 0.00 0.00 3.85
68 69 3.519913 ACCTTGGGTCTTCTTGATAGTCC 59.480 47.826 0.00 0.00 0.00 3.85
69 70 4.828072 ACCTTGGGTCTTCTTGATAGTC 57.172 45.455 0.00 0.00 0.00 2.59
71 72 6.490040 TCAAAAACCTTGGGTCTTCTTGATAG 59.510 38.462 0.00 0.00 33.12 2.08
72 73 6.369629 TCAAAAACCTTGGGTCTTCTTGATA 58.630 36.000 0.00 0.00 33.12 2.15
74 75 4.605183 TCAAAAACCTTGGGTCTTCTTGA 58.395 39.130 0.00 0.00 33.12 3.02
75 76 5.535753 ATCAAAAACCTTGGGTCTTCTTG 57.464 39.130 0.00 0.00 33.12 3.02
76 77 6.373759 AGTATCAAAAACCTTGGGTCTTCTT 58.626 36.000 0.00 0.00 33.12 2.52
78 79 5.768164 TGAGTATCAAAAACCTTGGGTCTTC 59.232 40.000 0.00 0.00 45.97 2.87
79 80 5.701224 TGAGTATCAAAAACCTTGGGTCTT 58.299 37.500 0.00 0.00 45.97 3.01
80 81 5.319043 TGAGTATCAAAAACCTTGGGTCT 57.681 39.130 0.00 0.00 45.97 3.85
102 103 9.277783 AGCGCTGTTTTAATCTTCATATATCTT 57.722 29.630 10.39 0.00 0.00 2.40
103 104 8.715998 CAGCGCTGTTTTAATCTTCATATATCT 58.284 33.333 29.24 0.00 0.00 1.98
104 105 8.499162 ACAGCGCTGTTTTAATCTTCATATATC 58.501 33.333 36.44 0.00 41.83 1.63
105 106 8.383318 ACAGCGCTGTTTTAATCTTCATATAT 57.617 30.769 36.44 7.98 41.83 0.86
106 107 7.042051 GGACAGCGCTGTTTTAATCTTCATATA 60.042 37.037 40.77 0.00 45.05 0.86
108 109 5.064707 GGACAGCGCTGTTTTAATCTTCATA 59.935 40.000 40.77 0.00 45.05 2.15
110 111 3.188460 GGACAGCGCTGTTTTAATCTTCA 59.812 43.478 40.77 0.00 45.05 3.02
111 112 3.188460 TGGACAGCGCTGTTTTAATCTTC 59.812 43.478 40.77 24.87 45.05 2.87
112 113 3.146066 TGGACAGCGCTGTTTTAATCTT 58.854 40.909 40.77 17.72 45.05 2.40
113 114 2.778299 TGGACAGCGCTGTTTTAATCT 58.222 42.857 40.77 18.51 45.05 2.40
116 117 1.606668 CCTTGGACAGCGCTGTTTTAA 59.393 47.619 40.77 30.81 45.05 1.52
117 118 1.234821 CCTTGGACAGCGCTGTTTTA 58.765 50.000 40.77 26.98 45.05 1.52
118 119 1.455383 CCCTTGGACAGCGCTGTTTT 61.455 55.000 40.77 21.72 45.05 2.43
119 120 1.898574 CCCTTGGACAGCGCTGTTT 60.899 57.895 40.77 22.52 45.05 2.83
120 121 2.281761 CCCTTGGACAGCGCTGTT 60.282 61.111 40.77 25.86 45.05 3.16
124 125 4.785453 CTCCCCCTTGGACAGCGC 62.785 72.222 0.00 0.00 38.61 5.92
127 128 1.279271 CTAACACTCCCCCTTGGACAG 59.721 57.143 0.00 0.00 38.61 3.51
128 129 1.358152 CTAACACTCCCCCTTGGACA 58.642 55.000 0.00 0.00 38.61 4.02
130 131 0.494551 TCCTAACACTCCCCCTTGGA 59.505 55.000 0.00 0.00 42.41 3.53
131 132 1.368374 TTCCTAACACTCCCCCTTGG 58.632 55.000 0.00 0.00 0.00 3.61
132 133 2.846827 AGATTCCTAACACTCCCCCTTG 59.153 50.000 0.00 0.00 0.00 3.61
133 134 3.222394 AGATTCCTAACACTCCCCCTT 57.778 47.619 0.00 0.00 0.00 3.95
134 135 2.972153 AGATTCCTAACACTCCCCCT 57.028 50.000 0.00 0.00 0.00 4.79
135 136 5.845065 ACTATTAGATTCCTAACACTCCCCC 59.155 44.000 0.00 0.00 37.67 5.40
136 137 6.783482 AGACTATTAGATTCCTAACACTCCCC 59.217 42.308 0.00 0.00 37.67 4.81
137 138 7.842887 AGACTATTAGATTCCTAACACTCCC 57.157 40.000 0.00 0.00 37.67 4.30
156 157 8.954350 CGCCTAATTAGCCTAATACTAAGACTA 58.046 37.037 6.99 0.00 33.34 2.59
157 158 7.668886 TCGCCTAATTAGCCTAATACTAAGACT 59.331 37.037 6.99 0.00 33.34 3.24
159 160 8.591114 ATCGCCTAATTAGCCTAATACTAAGA 57.409 34.615 6.99 0.00 33.34 2.10
174 175 9.944376 TCTAAAGAATATGCTAATCGCCTAATT 57.056 29.630 0.00 0.00 38.05 1.40
175 176 9.944376 TTCTAAAGAATATGCTAATCGCCTAAT 57.056 29.630 0.00 0.00 38.05 1.73
176 177 9.944376 ATTCTAAAGAATATGCTAATCGCCTAA 57.056 29.630 3.36 0.00 42.48 2.69
191 192 9.847224 ACCATCGGTTACAATATTCTAAAGAAT 57.153 29.630 9.97 9.97 39.50 2.40
192 193 9.675464 AACCATCGGTTACAATATTCTAAAGAA 57.325 29.630 0.00 0.00 44.94 2.52
198 199 9.490379 GATTCTAACCATCGGTTACAATATTCT 57.510 33.333 6.45 0.00 44.94 2.40
199 200 8.718734 GGATTCTAACCATCGGTTACAATATTC 58.281 37.037 6.45 0.00 44.94 1.75
201 202 7.878127 CAGGATTCTAACCATCGGTTACAATAT 59.122 37.037 6.45 0.00 44.94 1.28
202 203 7.214381 CAGGATTCTAACCATCGGTTACAATA 58.786 38.462 6.45 0.00 44.94 1.90
203 204 6.055588 CAGGATTCTAACCATCGGTTACAAT 58.944 40.000 6.22 6.22 44.94 2.71
207 208 3.181458 GCCAGGATTCTAACCATCGGTTA 60.181 47.826 5.54 5.54 44.94 2.85
209 210 1.141053 GCCAGGATTCTAACCATCGGT 59.859 52.381 0.00 0.00 37.65 4.69
210 211 1.873903 CGCCAGGATTCTAACCATCGG 60.874 57.143 0.00 0.00 0.00 4.18
213 214 2.026262 ACAACGCCAGGATTCTAACCAT 60.026 45.455 0.00 0.00 0.00 3.55
214 215 1.349688 ACAACGCCAGGATTCTAACCA 59.650 47.619 0.00 0.00 0.00 3.67
215 216 2.007608 GACAACGCCAGGATTCTAACC 58.992 52.381 0.00 0.00 0.00 2.85
216 217 2.007608 GGACAACGCCAGGATTCTAAC 58.992 52.381 0.00 0.00 0.00 2.34
219 220 2.066340 TGGACAACGCCAGGATTCT 58.934 52.632 0.00 0.00 33.10 2.40
230 231 2.080286 ATGTACTGCGTCTGGACAAC 57.920 50.000 6.03 0.00 30.36 3.32
231 232 2.416836 GCTATGTACTGCGTCTGGACAA 60.417 50.000 6.03 0.00 30.36 3.18
232 233 1.134367 GCTATGTACTGCGTCTGGACA 59.866 52.381 4.74 4.74 31.08 4.02
233 234 1.841450 GCTATGTACTGCGTCTGGAC 58.159 55.000 0.00 0.00 0.00 4.02
234 235 0.380733 CGCTATGTACTGCGTCTGGA 59.619 55.000 16.18 0.00 46.09 3.86
242 243 2.597305 GACAACGGTTCGCTATGTACTG 59.403 50.000 0.00 0.00 0.00 2.74
243 244 2.730090 CGACAACGGTTCGCTATGTACT 60.730 50.000 0.00 0.00 35.72 2.73
244 245 1.580704 CGACAACGGTTCGCTATGTAC 59.419 52.381 0.00 0.00 35.72 2.90
245 246 1.199789 ACGACAACGGTTCGCTATGTA 59.800 47.619 2.35 0.00 44.46 2.29
246 247 0.038892 ACGACAACGGTTCGCTATGT 60.039 50.000 2.35 0.00 44.46 2.29
248 249 0.038892 ACACGACAACGGTTCGCTAT 60.039 50.000 2.35 0.00 44.46 2.97
249 250 0.248990 AACACGACAACGGTTCGCTA 60.249 50.000 2.35 0.00 44.46 4.26
251 252 0.247775 AAAACACGACAACGGTTCGC 60.248 50.000 2.35 0.00 44.46 4.70
253 254 3.095738 CAGAAAAACACGACAACGGTTC 58.904 45.455 0.00 0.00 44.46 3.62
254 255 2.743126 TCAGAAAAACACGACAACGGTT 59.257 40.909 0.00 0.00 44.46 4.44
255 256 2.348660 TCAGAAAAACACGACAACGGT 58.651 42.857 0.00 0.00 44.46 4.83
257 258 3.095738 GGTTCAGAAAAACACGACAACG 58.904 45.455 0.00 0.00 45.75 4.10
258 259 3.095738 CGGTTCAGAAAAACACGACAAC 58.904 45.455 0.00 0.00 0.00 3.32
259 260 2.743126 ACGGTTCAGAAAAACACGACAA 59.257 40.909 0.00 0.00 31.58 3.18
262 263 1.589320 CGACGGTTCAGAAAAACACGA 59.411 47.619 0.00 0.00 31.58 4.35
263 264 1.914257 GCGACGGTTCAGAAAAACACG 60.914 52.381 0.00 0.00 0.00 4.49
264 265 1.596220 GGCGACGGTTCAGAAAAACAC 60.596 52.381 0.00 0.00 0.00 3.32
265 266 0.658897 GGCGACGGTTCAGAAAAACA 59.341 50.000 0.00 0.00 0.00 2.83
280 281 1.227704 TTGAGAAAAGGTGCGGCGA 60.228 52.632 12.98 0.00 0.00 5.54
281 282 1.082104 GTTGAGAAAAGGTGCGGCG 60.082 57.895 0.51 0.51 0.00 6.46
284 285 1.531149 ACATCGTTGAGAAAAGGTGCG 59.469 47.619 0.00 0.00 0.00 5.34
285 286 2.548057 TCACATCGTTGAGAAAAGGTGC 59.452 45.455 0.00 0.00 0.00 5.01
286 287 3.362986 CGTCACATCGTTGAGAAAAGGTG 60.363 47.826 0.00 0.00 0.00 4.00
287 288 2.800544 CGTCACATCGTTGAGAAAAGGT 59.199 45.455 0.00 0.00 0.00 3.50
289 290 2.411547 GGCGTCACATCGTTGAGAAAAG 60.412 50.000 0.00 0.00 0.00 2.27
291 292 1.144969 GGCGTCACATCGTTGAGAAA 58.855 50.000 0.00 0.00 0.00 2.52
292 293 0.317160 AGGCGTCACATCGTTGAGAA 59.683 50.000 0.00 0.00 0.00 2.87
293 294 0.109272 GAGGCGTCACATCGTTGAGA 60.109 55.000 0.52 0.00 0.00 3.27
295 296 0.317160 AAGAGGCGTCACATCGTTGA 59.683 50.000 9.41 0.00 0.00 3.18
296 297 0.439985 CAAGAGGCGTCACATCGTTG 59.560 55.000 9.41 0.00 0.00 4.10
297 298 0.033504 ACAAGAGGCGTCACATCGTT 59.966 50.000 9.41 0.00 0.00 3.85
298 299 0.885879 TACAAGAGGCGTCACATCGT 59.114 50.000 9.41 0.91 0.00 3.73
300 301 2.535984 CGATTACAAGAGGCGTCACATC 59.464 50.000 9.41 1.99 0.00 3.06
302 303 1.542472 TCGATTACAAGAGGCGTCACA 59.458 47.619 9.41 0.00 0.00 3.58
304 305 1.466866 CGTCGATTACAAGAGGCGTCA 60.467 52.381 9.41 0.00 0.00 4.35
305 306 1.189403 CGTCGATTACAAGAGGCGTC 58.811 55.000 0.00 0.00 0.00 5.19
306 307 0.801067 GCGTCGATTACAAGAGGCGT 60.801 55.000 0.00 0.00 38.26 5.68
307 308 1.917921 GCGTCGATTACAAGAGGCG 59.082 57.895 0.00 0.00 38.26 5.52
308 309 0.924090 CAGCGTCGATTACAAGAGGC 59.076 55.000 0.00 2.42 45.34 4.70
310 311 4.619760 TGTTTACAGCGTCGATTACAAGAG 59.380 41.667 0.00 0.00 0.00 2.85
311 312 4.548494 TGTTTACAGCGTCGATTACAAGA 58.452 39.130 0.00 0.00 0.00 3.02
312 313 4.896562 TGTTTACAGCGTCGATTACAAG 57.103 40.909 0.00 0.00 0.00 3.16
313 314 4.327898 GGATGTTTACAGCGTCGATTACAA 59.672 41.667 0.00 0.00 32.09 2.41
314 315 3.861113 GGATGTTTACAGCGTCGATTACA 59.139 43.478 0.00 0.00 32.09 2.41
316 317 4.112716 TGGATGTTTACAGCGTCGATTA 57.887 40.909 0.00 0.00 32.09 1.75
317 318 2.967362 TGGATGTTTACAGCGTCGATT 58.033 42.857 0.00 0.00 32.09 3.34
318 319 2.665649 TGGATGTTTACAGCGTCGAT 57.334 45.000 0.00 0.00 32.09 3.59
319 320 2.665649 ATGGATGTTTACAGCGTCGA 57.334 45.000 0.00 0.00 32.09 4.20
320 321 2.670905 TGAATGGATGTTTACAGCGTCG 59.329 45.455 0.00 0.00 32.09 5.12
322 323 3.009723 CCTGAATGGATGTTTACAGCGT 58.990 45.455 0.00 0.00 38.35 5.07
323 324 3.270027 TCCTGAATGGATGTTTACAGCG 58.730 45.455 0.00 0.00 40.56 5.18
334 335 6.491062 CCATGCTTTTATATGTCCTGAATGGA 59.509 38.462 0.00 0.00 43.86 3.41
335 336 6.491062 TCCATGCTTTTATATGTCCTGAATGG 59.509 38.462 0.00 0.00 37.10 3.16
336 337 7.514784 TCCATGCTTTTATATGTCCTGAATG 57.485 36.000 0.00 0.00 0.00 2.67
337 338 7.946219 TCATCCATGCTTTTATATGTCCTGAAT 59.054 33.333 0.00 0.00 0.00 2.57
338 339 7.289310 TCATCCATGCTTTTATATGTCCTGAA 58.711 34.615 0.00 0.00 0.00 3.02
339 340 6.840527 TCATCCATGCTTTTATATGTCCTGA 58.159 36.000 0.00 0.00 0.00 3.86
342 343 8.114331 TGATTCATCCATGCTTTTATATGTCC 57.886 34.615 0.00 0.00 0.00 4.02
351 352 9.542462 CTTTATTGATTGATTCATCCATGCTTT 57.458 29.630 0.00 0.00 33.34 3.51
353 354 8.473358 TCTTTATTGATTGATTCATCCATGCT 57.527 30.769 0.00 0.00 33.34 3.79
354 355 9.355215 GATCTTTATTGATTGATTCATCCATGC 57.645 33.333 0.00 0.00 33.34 4.06
357 358 9.636789 AGTGATCTTTATTGATTGATTCATCCA 57.363 29.630 0.00 0.00 33.34 3.41
360 361 9.636789 TGGAGTGATCTTTATTGATTGATTCAT 57.363 29.630 0.00 0.00 33.34 2.57
361 362 9.636789 ATGGAGTGATCTTTATTGATTGATTCA 57.363 29.630 0.00 0.00 0.00 2.57
369 370 9.958180 TGAAGTAAATGGAGTGATCTTTATTGA 57.042 29.630 0.00 0.00 0.00 2.57
374 375 9.525826 AAGATTGAAGTAAATGGAGTGATCTTT 57.474 29.630 0.00 0.00 28.76 2.52
375 376 9.525826 AAAGATTGAAGTAAATGGAGTGATCTT 57.474 29.630 0.00 0.00 33.08 2.40
376 377 9.171877 GAAAGATTGAAGTAAATGGAGTGATCT 57.828 33.333 0.00 0.00 0.00 2.75
379 380 7.939039 ACAGAAAGATTGAAGTAAATGGAGTGA 59.061 33.333 0.00 0.00 0.00 3.41
380 381 8.103948 ACAGAAAGATTGAAGTAAATGGAGTG 57.896 34.615 0.00 0.00 0.00 3.51
381 382 8.697507 AACAGAAAGATTGAAGTAAATGGAGT 57.302 30.769 0.00 0.00 0.00 3.85
382 383 9.617975 GAAACAGAAAGATTGAAGTAAATGGAG 57.382 33.333 0.00 0.00 0.00 3.86
383 384 9.354673 AGAAACAGAAAGATTGAAGTAAATGGA 57.645 29.630 0.00 0.00 0.00 3.41
384 385 9.617975 GAGAAACAGAAAGATTGAAGTAAATGG 57.382 33.333 0.00 0.00 0.00 3.16
388 389 9.613428 TGAAGAGAAACAGAAAGATTGAAGTAA 57.387 29.630 0.00 0.00 0.00 2.24
389 390 9.046296 GTGAAGAGAAACAGAAAGATTGAAGTA 57.954 33.333 0.00 0.00 0.00 2.24
390 391 7.772757 AGTGAAGAGAAACAGAAAGATTGAAGT 59.227 33.333 0.00 0.00 0.00 3.01
391 392 8.152309 AGTGAAGAGAAACAGAAAGATTGAAG 57.848 34.615 0.00 0.00 0.00 3.02
392 393 8.511604 AAGTGAAGAGAAACAGAAAGATTGAA 57.488 30.769 0.00 0.00 0.00 2.69
393 394 9.265901 CTAAGTGAAGAGAAACAGAAAGATTGA 57.734 33.333 0.00 0.00 0.00 2.57
396 397 7.449247 AGCTAAGTGAAGAGAAACAGAAAGAT 58.551 34.615 0.00 0.00 0.00 2.40
397 398 6.821388 AGCTAAGTGAAGAGAAACAGAAAGA 58.179 36.000 0.00 0.00 0.00 2.52
398 399 7.489574 AAGCTAAGTGAAGAGAAACAGAAAG 57.510 36.000 0.00 0.00 0.00 2.62
399 400 8.993121 CATAAGCTAAGTGAAGAGAAACAGAAA 58.007 33.333 0.00 0.00 0.00 2.52
400 401 7.604164 CCATAAGCTAAGTGAAGAGAAACAGAA 59.396 37.037 0.00 0.00 0.00 3.02
401 402 7.099764 CCATAAGCTAAGTGAAGAGAAACAGA 58.900 38.462 0.00 0.00 0.00 3.41
402 403 6.876257 ACCATAAGCTAAGTGAAGAGAAACAG 59.124 38.462 0.00 0.00 0.00 3.16
403 404 6.769512 ACCATAAGCTAAGTGAAGAGAAACA 58.230 36.000 0.00 0.00 0.00 2.83
405 406 6.149474 GCAACCATAAGCTAAGTGAAGAGAAA 59.851 38.462 0.00 0.00 0.00 2.52
406 407 5.643777 GCAACCATAAGCTAAGTGAAGAGAA 59.356 40.000 0.00 0.00 0.00 2.87
407 408 5.046304 AGCAACCATAAGCTAAGTGAAGAGA 60.046 40.000 0.00 0.00 39.78 3.10
409 410 5.165961 AGCAACCATAAGCTAAGTGAAGA 57.834 39.130 0.00 0.00 39.78 2.87
410 411 6.985188 TTAGCAACCATAAGCTAAGTGAAG 57.015 37.500 3.01 0.00 45.47 3.02
420 421 4.156556 TGAAGCAAGCTTAGCAACCATAAG 59.843 41.667 18.74 0.00 36.26 1.73
421 422 4.078537 TGAAGCAAGCTTAGCAACCATAA 58.921 39.130 18.74 0.00 36.26 1.90
422 423 3.684908 TGAAGCAAGCTTAGCAACCATA 58.315 40.909 18.74 1.95 36.26 2.74
424 425 1.979855 TGAAGCAAGCTTAGCAACCA 58.020 45.000 18.74 11.91 36.26 3.67
425 426 3.582714 AATGAAGCAAGCTTAGCAACC 57.417 42.857 18.74 10.13 36.26 3.77
426 427 6.808212 TCATTAAATGAAGCAAGCTTAGCAAC 59.192 34.615 18.74 13.35 36.11 4.17
427 428 6.923012 TCATTAAATGAAGCAAGCTTAGCAA 58.077 32.000 18.74 7.95 36.11 3.91
428 429 6.513806 TCATTAAATGAAGCAAGCTTAGCA 57.486 33.333 18.74 3.03 36.11 3.49
429 430 7.998753 AATCATTAAATGAAGCAAGCTTAGC 57.001 32.000 7.37 5.67 43.50 3.09
458 459 7.176690 CCCACCAATACATGAAGAACTTTAGTT 59.823 37.037 0.00 0.00 41.64 2.24
459 460 6.659242 CCCACCAATACATGAAGAACTTTAGT 59.341 38.462 0.00 0.00 0.00 2.24
460 461 6.404734 GCCCACCAATACATGAAGAACTTTAG 60.405 42.308 0.00 0.00 0.00 1.85
461 462 5.417580 GCCCACCAATACATGAAGAACTTTA 59.582 40.000 0.00 0.00 0.00 1.85
462 463 4.220602 GCCCACCAATACATGAAGAACTTT 59.779 41.667 0.00 0.00 0.00 2.66
463 464 3.763897 GCCCACCAATACATGAAGAACTT 59.236 43.478 0.00 0.00 0.00 2.66
465 466 3.356290 AGCCCACCAATACATGAAGAAC 58.644 45.455 0.00 0.00 0.00 3.01
466 467 3.620488 GAGCCCACCAATACATGAAGAA 58.380 45.455 0.00 0.00 0.00 2.52
467 468 2.092429 GGAGCCCACCAATACATGAAGA 60.092 50.000 0.00 0.00 0.00 2.87
468 469 2.301346 GGAGCCCACCAATACATGAAG 58.699 52.381 0.00 0.00 0.00 3.02
469 470 1.064017 GGGAGCCCACCAATACATGAA 60.064 52.381 0.00 0.00 35.81 2.57
470 471 0.550914 GGGAGCCCACCAATACATGA 59.449 55.000 0.00 0.00 35.81 3.07
471 472 0.552848 AGGGAGCCCACCAATACATG 59.447 55.000 8.53 0.00 38.92 3.21
472 473 1.215423 GAAGGGAGCCCACCAATACAT 59.785 52.381 8.53 0.00 38.92 2.29
473 474 0.623723 GAAGGGAGCCCACCAATACA 59.376 55.000 8.53 0.00 38.92 2.29
475 476 1.681229 AAGAAGGGAGCCCACCAATA 58.319 50.000 8.53 0.00 38.92 1.90
477 478 0.560688 AAAAGAAGGGAGCCCACCAA 59.439 50.000 8.53 0.00 38.92 3.67
478 479 1.451449 TAAAAGAAGGGAGCCCACCA 58.549 50.000 8.53 0.00 38.92 4.17
479 480 2.597578 TTAAAAGAAGGGAGCCCACC 57.402 50.000 8.53 0.00 38.92 4.61
481 482 4.126520 ACATTTAAAAGAAGGGAGCCCA 57.873 40.909 8.53 0.00 38.92 5.36
482 483 5.483685 AAACATTTAAAAGAAGGGAGCCC 57.516 39.130 0.00 0.00 0.00 5.19
483 484 5.179368 GCAAAACATTTAAAAGAAGGGAGCC 59.821 40.000 0.00 0.00 0.00 4.70
486 487 6.493189 AGGCAAAACATTTAAAAGAAGGGA 57.507 33.333 0.00 0.00 0.00 4.20
487 488 6.873605 CCTAGGCAAAACATTTAAAAGAAGGG 59.126 38.462 0.00 0.00 0.00 3.95
490 491 8.478877 TGAACCTAGGCAAAACATTTAAAAGAA 58.521 29.630 9.30 0.00 0.00 2.52
491 492 7.923878 GTGAACCTAGGCAAAACATTTAAAAGA 59.076 33.333 9.30 0.00 0.00 2.52
493 494 6.697892 CGTGAACCTAGGCAAAACATTTAAAA 59.302 34.615 9.30 0.00 0.00 1.52
494 495 6.210078 CGTGAACCTAGGCAAAACATTTAAA 58.790 36.000 9.30 0.00 0.00 1.52
495 496 5.764131 CGTGAACCTAGGCAAAACATTTAA 58.236 37.500 9.30 0.00 0.00 1.52
496 497 4.320641 GCGTGAACCTAGGCAAAACATTTA 60.321 41.667 9.30 0.00 0.00 1.40
497 498 3.552068 GCGTGAACCTAGGCAAAACATTT 60.552 43.478 9.30 0.00 0.00 2.32
498 499 2.030274 GCGTGAACCTAGGCAAAACATT 60.030 45.455 9.30 0.00 0.00 2.71
499 500 1.539827 GCGTGAACCTAGGCAAAACAT 59.460 47.619 9.30 0.00 0.00 2.71
500 501 0.948678 GCGTGAACCTAGGCAAAACA 59.051 50.000 9.30 0.00 0.00 2.83
501 502 0.110373 CGCGTGAACCTAGGCAAAAC 60.110 55.000 9.30 1.41 0.00 2.43
502 503 1.847890 GCGCGTGAACCTAGGCAAAA 61.848 55.000 9.30 0.00 0.00 2.44
504 505 2.725203 AAGCGCGTGAACCTAGGCAA 62.725 55.000 9.30 0.00 0.00 4.52
506 507 1.146358 CTAAGCGCGTGAACCTAGGC 61.146 60.000 9.30 0.00 0.00 3.93
507 508 1.146358 GCTAAGCGCGTGAACCTAGG 61.146 60.000 7.41 7.41 0.00 3.02
510 511 0.673644 AATGCTAAGCGCGTGAACCT 60.674 50.000 8.43 0.00 43.27 3.50
512 513 0.521242 CCAATGCTAAGCGCGTGAAC 60.521 55.000 8.43 0.00 43.27 3.18
513 514 0.953471 ACCAATGCTAAGCGCGTGAA 60.953 50.000 8.43 0.00 43.27 3.18
514 515 0.953471 AACCAATGCTAAGCGCGTGA 60.953 50.000 8.43 0.00 43.27 4.35
515 516 0.521242 GAACCAATGCTAAGCGCGTG 60.521 55.000 8.43 0.00 43.27 5.34
516 517 0.673644 AGAACCAATGCTAAGCGCGT 60.674 50.000 8.43 0.00 43.27 6.01
517 518 0.447801 AAGAACCAATGCTAAGCGCG 59.552 50.000 0.00 0.00 43.27 6.86
518 519 2.162408 AGAAAGAACCAATGCTAAGCGC 59.838 45.455 0.00 0.00 39.77 5.92
519 520 3.426695 CCAGAAAGAACCAATGCTAAGCG 60.427 47.826 0.00 0.00 0.00 4.68
520 521 3.119352 CCCAGAAAGAACCAATGCTAAGC 60.119 47.826 0.00 0.00 0.00 3.09
521 522 4.335416 TCCCAGAAAGAACCAATGCTAAG 58.665 43.478 0.00 0.00 0.00 2.18
522 523 4.380843 TCCCAGAAAGAACCAATGCTAA 57.619 40.909 0.00 0.00 0.00 3.09
526 527 3.445096 GGTGATCCCAGAAAGAACCAATG 59.555 47.826 0.00 0.00 0.00 2.82
527 528 3.075882 TGGTGATCCCAGAAAGAACCAAT 59.924 43.478 0.00 0.00 38.72 3.16
528 529 2.445145 TGGTGATCCCAGAAAGAACCAA 59.555 45.455 0.00 0.00 38.72 3.67
529 530 2.061848 TGGTGATCCCAGAAAGAACCA 58.938 47.619 0.00 0.00 38.72 3.67
530 531 2.224769 TGTGGTGATCCCAGAAAGAACC 60.225 50.000 3.41 0.00 46.45 3.62
531 532 2.814336 GTGTGGTGATCCCAGAAAGAAC 59.186 50.000 3.41 0.00 46.45 3.01
532 533 2.224769 GGTGTGGTGATCCCAGAAAGAA 60.225 50.000 3.41 0.00 46.45 2.52
533 534 1.351017 GGTGTGGTGATCCCAGAAAGA 59.649 52.381 3.41 0.00 46.45 2.52
536 537 0.770166 TGGGTGTGGTGATCCCAGAA 60.770 55.000 3.41 0.00 46.45 3.02
537 538 1.151921 TGGGTGTGGTGATCCCAGA 60.152 57.895 3.41 0.18 46.45 3.86
538 539 3.494506 TGGGTGTGGTGATCCCAG 58.505 61.111 3.41 0.00 46.45 4.45
540 541 0.181350 GAGATGGGTGTGGTGATCCC 59.819 60.000 0.00 0.00 41.41 3.85
541 542 1.139853 GAGAGATGGGTGTGGTGATCC 59.860 57.143 0.00 0.00 0.00 3.36
542 543 2.102252 GAGAGAGATGGGTGTGGTGATC 59.898 54.545 0.00 0.00 0.00 2.92
543 544 2.114616 GAGAGAGATGGGTGTGGTGAT 58.885 52.381 0.00 0.00 0.00 3.06
544 545 1.561643 GAGAGAGATGGGTGTGGTGA 58.438 55.000 0.00 0.00 0.00 4.02
545 546 0.539051 GGAGAGAGATGGGTGTGGTG 59.461 60.000 0.00 0.00 0.00 4.17
546 547 0.415429 AGGAGAGAGATGGGTGTGGT 59.585 55.000 0.00 0.00 0.00 4.16
548 549 2.157640 AGAGGAGAGAGATGGGTGTG 57.842 55.000 0.00 0.00 0.00 3.82
549 550 2.938428 AAGAGGAGAGAGATGGGTGT 57.062 50.000 0.00 0.00 0.00 4.16
550 551 5.885449 ATTTAAGAGGAGAGAGATGGGTG 57.115 43.478 0.00 0.00 0.00 4.61
551 552 7.136203 AGTTATTTAAGAGGAGAGAGATGGGT 58.864 38.462 0.00 0.00 0.00 4.51
552 553 7.610580 AGTTATTTAAGAGGAGAGAGATGGG 57.389 40.000 0.00 0.00 0.00 4.00
592 593 5.183140 GCTAAGTCTTCCATGTAGGCAAAAA 59.817 40.000 0.00 0.00 37.29 1.94
593 594 4.700213 GCTAAGTCTTCCATGTAGGCAAAA 59.300 41.667 0.00 0.00 37.29 2.44
595 596 3.263170 TGCTAAGTCTTCCATGTAGGCAA 59.737 43.478 0.00 0.00 37.29 4.52
596 597 2.837591 TGCTAAGTCTTCCATGTAGGCA 59.162 45.455 0.00 0.00 37.29 4.75
597 598 3.198872 GTGCTAAGTCTTCCATGTAGGC 58.801 50.000 0.00 0.00 37.29 3.93
598 599 3.452627 AGGTGCTAAGTCTTCCATGTAGG 59.547 47.826 0.00 0.00 39.47 3.18
599 600 4.081420 ACAGGTGCTAAGTCTTCCATGTAG 60.081 45.833 0.00 0.00 0.00 2.74
601 602 2.639839 ACAGGTGCTAAGTCTTCCATGT 59.360 45.455 0.00 0.00 0.00 3.21
602 603 3.340814 ACAGGTGCTAAGTCTTCCATG 57.659 47.619 0.00 0.00 0.00 3.66
603 604 3.838317 TGTACAGGTGCTAAGTCTTCCAT 59.162 43.478 0.00 0.00 0.00 3.41
604 605 3.236047 TGTACAGGTGCTAAGTCTTCCA 58.764 45.455 0.00 0.00 0.00 3.53
606 607 4.246458 CCTTGTACAGGTGCTAAGTCTTC 58.754 47.826 4.10 0.00 37.99 2.87
607 608 4.273148 CCTTGTACAGGTGCTAAGTCTT 57.727 45.455 4.10 0.00 37.99 3.01
608 609 3.963428 CCTTGTACAGGTGCTAAGTCT 57.037 47.619 4.10 0.00 37.99 3.24
620 621 2.107378 TCCCAATGCTTCACCTTGTACA 59.893 45.455 0.00 0.00 0.00 2.90
622 623 2.290896 CCTCCCAATGCTTCACCTTGTA 60.291 50.000 0.00 0.00 0.00 2.41
623 624 1.548582 CCTCCCAATGCTTCACCTTGT 60.549 52.381 0.00 0.00 0.00 3.16
625 626 0.040204 CCCTCCCAATGCTTCACCTT 59.960 55.000 0.00 0.00 0.00 3.50
626 627 1.693640 CCCTCCCAATGCTTCACCT 59.306 57.895 0.00 0.00 0.00 4.00
627 628 1.380380 CCCCTCCCAATGCTTCACC 60.380 63.158 0.00 0.00 0.00 4.02
628 629 2.054453 GCCCCTCCCAATGCTTCAC 61.054 63.158 0.00 0.00 0.00 3.18
629 630 2.360191 GCCCCTCCCAATGCTTCA 59.640 61.111 0.00 0.00 0.00 3.02
630 631 2.265467 TACGCCCCTCCCAATGCTTC 62.265 60.000 0.00 0.00 0.00 3.86
631 632 1.858739 TTACGCCCCTCCCAATGCTT 61.859 55.000 0.00 0.00 0.00 3.91
632 633 1.645402 ATTACGCCCCTCCCAATGCT 61.645 55.000 0.00 0.00 0.00 3.79
634 635 0.823356 CCATTACGCCCCTCCCAATG 60.823 60.000 0.00 0.00 0.00 2.82
635 636 0.991355 TCCATTACGCCCCTCCCAAT 60.991 55.000 0.00 0.00 0.00 3.16
636 637 0.991355 ATCCATTACGCCCCTCCCAA 60.991 55.000 0.00 0.00 0.00 4.12
640 641 0.603975 GCTCATCCATTACGCCCCTC 60.604 60.000 0.00 0.00 0.00 4.30
643 644 1.961277 CGGCTCATCCATTACGCCC 60.961 63.158 0.00 0.00 37.47 6.13
645 646 1.595382 AGCGGCTCATCCATTACGC 60.595 57.895 0.00 0.00 46.50 4.42
646 647 0.249447 TCAGCGGCTCATCCATTACG 60.249 55.000 0.00 0.00 34.01 3.18
828 841 2.261172 TTCGCGACGTGACGGATGAT 62.261 55.000 9.15 0.00 0.00 2.45
829 842 2.968639 TTCGCGACGTGACGGATGA 61.969 57.895 9.15 0.00 0.00 2.92
901 3733 2.308722 TGCTCCAGGTTGGGGATCC 61.309 63.158 1.92 1.92 41.85 3.36
902 3734 1.077429 GTGCTCCAGGTTGGGGATC 60.077 63.158 0.00 0.00 41.85 3.36
904 3736 2.449518 TGTGCTCCAGGTTGGGGA 60.450 61.111 0.00 0.00 41.85 4.81
905 3737 2.282462 GTGTGCTCCAGGTTGGGG 60.282 66.667 0.00 0.00 42.32 4.96
906 3738 2.107041 TACGTGTGCTCCAGGTTGGG 62.107 60.000 0.00 0.00 42.02 4.12
912 3744 4.996976 AGCTTACGTGTGCTCCAG 57.003 55.556 10.64 0.00 33.90 3.86
916 3748 1.004918 GGTGGAGCTTACGTGTGCT 60.005 57.895 15.28 15.28 42.82 4.40
951 3783 0.387929 TATACAGGCCGTGTAGCTGC 59.612 55.000 16.69 0.00 45.06 5.25
966 4123 2.593257 GAGACGGCCGCACTTATATAC 58.407 52.381 28.58 8.10 0.00 1.47
1023 4194 1.269569 TGGTGTAGTTCTGTGAGTGCG 60.270 52.381 0.00 0.00 0.00 5.34
1026 4197 2.802057 GCGTTGGTGTAGTTCTGTGAGT 60.802 50.000 0.00 0.00 0.00 3.41
1041 4220 2.127251 GGCTCTTTTCTTTTGCGTTGG 58.873 47.619 0.00 0.00 0.00 3.77
1052 4231 4.398044 TGGATTTGGATTACGGCTCTTTTC 59.602 41.667 0.00 0.00 0.00 2.29
1061 4240 4.129380 TGATCTGCTGGATTTGGATTACG 58.871 43.478 0.00 0.00 34.33 3.18
1062 4241 6.645790 AATGATCTGCTGGATTTGGATTAC 57.354 37.500 0.00 0.00 34.33 1.89
1063 4242 8.219868 TCTTAATGATCTGCTGGATTTGGATTA 58.780 33.333 0.00 0.00 34.33 1.75
1143 4343 4.853507 CAGCGACACAATTGGCTG 57.146 55.556 16.58 16.58 45.74 4.85
1210 4410 4.135493 GCGAACCGAGCGAGTTGC 62.135 66.667 0.00 0.00 46.98 4.17
1405 4629 2.541547 CTTCCGCTCCTTGATGGCCA 62.542 60.000 8.56 8.56 35.26 5.36
1523 4747 4.201679 CACCGGTCGAGCGCCATA 62.202 66.667 30.24 0.00 0.00 2.74
1627 4878 5.930837 AGTAAGAAACTGAGAGATCCAGG 57.069 43.478 3.03 0.00 36.93 4.45
1656 4908 9.120538 ACATGTACAATTCCTGGATTGTTATAC 57.879 33.333 21.30 16.27 45.38 1.47
1657 4909 9.337396 GACATGTACAATTCCTGGATTGTTATA 57.663 33.333 21.30 12.90 45.38 0.98
1658 4910 7.012327 CGACATGTACAATTCCTGGATTGTTAT 59.988 37.037 21.30 15.76 45.38 1.89
1659 4911 6.315144 CGACATGTACAATTCCTGGATTGTTA 59.685 38.462 21.30 14.74 45.38 2.41
1660 4912 5.123820 CGACATGTACAATTCCTGGATTGTT 59.876 40.000 21.30 9.69 45.38 2.83
1692 4951 8.983724 GTAACGTACTCTATCGTAACCTATCTT 58.016 37.037 0.00 0.00 39.39 2.40
1766 5028 2.735134 CCCAGTCGAACGGTTAAGAAAG 59.265 50.000 0.00 0.00 0.00 2.62
1778 5040 4.960469 AGTGTATCTAAATCCCCAGTCGAA 59.040 41.667 0.00 0.00 0.00 3.71
1880 5146 3.694734 AGAATTGCAGTGAACAACAACG 58.305 40.909 0.00 0.00 0.00 4.10
1893 5159 5.670485 ACTTGTGATCCGTATAGAATTGCA 58.330 37.500 0.00 0.00 0.00 4.08
1900 5166 8.141909 TCCAAATTAGACTTGTGATCCGTATAG 58.858 37.037 0.00 0.00 0.00 1.31
1905 5171 4.332819 GGTCCAAATTAGACTTGTGATCCG 59.667 45.833 8.09 0.00 34.56 4.18
1907 5173 5.501156 AGGGTCCAAATTAGACTTGTGATC 58.499 41.667 8.09 0.00 34.56 2.92
1908 5174 5.520748 AGGGTCCAAATTAGACTTGTGAT 57.479 39.130 8.09 0.00 34.56 3.06
1909 5175 4.993705 AGGGTCCAAATTAGACTTGTGA 57.006 40.909 8.09 0.00 34.56 3.58
1910 5176 7.703058 ATTTAGGGTCCAAATTAGACTTGTG 57.297 36.000 8.09 0.00 34.56 3.33
1927 5193 8.600449 TGTTGCAGAATTTTACAAATTTAGGG 57.400 30.769 0.00 0.00 0.00 3.53
1942 5208 5.355350 GTGAAGGTAGCTTATGTTGCAGAAT 59.645 40.000 7.26 0.00 0.00 2.40
1945 5211 4.002982 TGTGAAGGTAGCTTATGTTGCAG 58.997 43.478 7.26 0.00 0.00 4.41
1951 5217 8.723942 ATCTTAAGTTGTGAAGGTAGCTTATG 57.276 34.615 7.26 0.00 0.00 1.90
1991 5257 3.181530 CGAGCAAAAGAATCAGTGTACCG 60.182 47.826 0.00 0.00 0.00 4.02
1998 5264 0.097674 CGGGCGAGCAAAAGAATCAG 59.902 55.000 0.00 0.00 0.00 2.90
2005 5271 1.153353 CTTAACTCGGGCGAGCAAAA 58.847 50.000 0.00 0.00 45.54 2.44
2016 5282 1.226603 CGCCCTCGTCCTTAACTCG 60.227 63.158 0.00 0.00 0.00 4.18
2038 5304 1.003355 CATTCTGCAGACCACGGGT 60.003 57.895 18.03 0.00 39.44 5.28
2039 5305 1.021390 GTCATTCTGCAGACCACGGG 61.021 60.000 18.03 2.58 0.00 5.28
2040 5306 1.354337 CGTCATTCTGCAGACCACGG 61.354 60.000 24.06 11.39 0.00 4.94
2041 5307 0.667487 ACGTCATTCTGCAGACCACG 60.667 55.000 27.52 27.52 0.00 4.94
2042 5308 0.792640 CACGTCATTCTGCAGACCAC 59.207 55.000 18.03 12.04 0.00 4.16
2043 5309 0.320683 CCACGTCATTCTGCAGACCA 60.321 55.000 18.03 2.52 0.00 4.02
2044 5310 1.021390 CCCACGTCATTCTGCAGACC 61.021 60.000 18.03 3.85 0.00 3.85
2045 5311 0.037326 TCCCACGTCATTCTGCAGAC 60.037 55.000 18.03 4.66 0.00 3.51
2046 5312 0.684535 TTCCCACGTCATTCTGCAGA 59.315 50.000 13.74 13.74 0.00 4.26
2047 5313 0.798776 GTTCCCACGTCATTCTGCAG 59.201 55.000 7.63 7.63 0.00 4.41
2048 5314 0.605319 GGTTCCCACGTCATTCTGCA 60.605 55.000 0.00 0.00 0.00 4.41
2054 5320 1.131303 TCCCTTGGTTCCCACGTCAT 61.131 55.000 0.00 0.00 30.78 3.06
2067 5333 0.036010 ACAGCCTCGACATTCCCTTG 60.036 55.000 0.00 0.00 0.00 3.61
2073 5339 0.759346 GGGGATACAGCCTCGACATT 59.241 55.000 0.00 0.00 39.74 2.71
2084 5626 2.690026 CGAGGAGGAAGAAGGGGATACA 60.690 54.545 0.00 0.00 39.74 2.29
2107 5664 1.478510 GAGGATGACGAGGAAGCAAGA 59.521 52.381 0.00 0.00 0.00 3.02
2130 5687 1.097547 GCGGGAGATGTCCATTGTGG 61.098 60.000 11.62 0.00 46.07 4.17
2150 5707 4.108299 ATTGGCATCGCGTGGGGA 62.108 61.111 5.77 0.00 0.00 4.81
2151 5708 3.891400 CATTGGCATCGCGTGGGG 61.891 66.667 5.77 0.00 0.00 4.96
2155 5712 2.829914 ATGGCATTGGCATCGCGT 60.830 55.556 19.12 0.00 45.69 6.01
2179 5736 2.187946 GAGGAGGATGTGGTGGCG 59.812 66.667 0.00 0.00 0.00 5.69
2186 5743 1.760086 CTGGCTCGGAGGAGGATGT 60.760 63.158 7.20 0.00 40.80 3.06
2217 5774 2.488153 TGGGCGATATACTGATCTCGTG 59.512 50.000 0.00 0.00 34.91 4.35
2226 5783 4.081087 AGTGACAAAAGTGGGCGATATACT 60.081 41.667 0.00 0.00 0.00 2.12
2233 5790 0.817634 TCCAGTGACAAAAGTGGGCG 60.818 55.000 0.00 0.00 40.54 6.13
2242 5799 3.381590 CGATAGATCCAGTCCAGTGACAA 59.618 47.826 0.00 0.00 41.05 3.18
2245 5802 3.577805 TCGATAGATCCAGTCCAGTGA 57.422 47.619 0.00 0.00 42.67 3.41
2260 5817 1.911766 GGGGGAGGCGGAATCGATA 60.912 63.158 0.00 0.00 39.00 2.92
2263 5820 2.172483 CTATGGGGGAGGCGGAATCG 62.172 65.000 0.00 0.00 39.81 3.34
2271 5828 2.061790 GCTTCAGGCTATGGGGGAGG 62.062 65.000 0.00 0.00 38.06 4.30
2272 5829 1.348008 TGCTTCAGGCTATGGGGGAG 61.348 60.000 0.00 0.00 42.39 4.30
2276 5833 0.107456 ATCGTGCTTCAGGCTATGGG 59.893 55.000 0.00 0.00 42.39 4.00
2305 5862 7.626740 TGCTTCCTAATGCACGACGAAGTAT 62.627 44.000 0.00 0.00 35.67 2.12
2311 5868 0.647410 CTGCTTCCTAATGCACGACG 59.353 55.000 0.00 0.00 35.20 5.12
2313 5870 1.275010 TGACTGCTTCCTAATGCACGA 59.725 47.619 0.00 0.00 35.20 4.35
2315 5872 2.223433 GCATGACTGCTTCCTAATGCAC 60.223 50.000 0.00 0.00 45.32 4.57
2318 5875 2.877168 GAGGCATGACTGCTTCCTAATG 59.123 50.000 5.31 0.00 45.95 1.90
2350 5907 2.561419 TGCTGGTGACTAGGTAGTTGAC 59.439 50.000 0.00 0.00 36.50 3.18
2382 5939 1.139947 AAACTCGAGCGAGCTAGCC 59.860 57.895 18.80 6.23 45.54 3.93
2398 5955 1.961793 ACTAGCTCGTGGTTTGCAAA 58.038 45.000 8.05 8.05 0.00 3.68
2415 5972 0.468226 TGGCCAGAACACGAGAAACT 59.532 50.000 0.00 0.00 0.00 2.66
2424 5981 2.655090 TGATGAAGTTGGCCAGAACA 57.345 45.000 5.11 5.99 0.00 3.18
2425 5982 2.821969 ACATGATGAAGTTGGCCAGAAC 59.178 45.455 5.11 1.52 0.00 3.01
2426 5983 3.159213 ACATGATGAAGTTGGCCAGAA 57.841 42.857 5.11 0.00 0.00 3.02
2503 6060 1.680735 GACACTGCTGATCTCCGATCT 59.319 52.381 0.00 0.00 0.00 2.75
2515 6072 2.267174 AAGCTCAATGTGACACTGCT 57.733 45.000 7.20 6.06 0.00 4.24
2520 6077 2.642311 TCCCCTTAAGCTCAATGTGACA 59.358 45.455 0.00 0.00 0.00 3.58
2521 6078 3.350219 TCCCCTTAAGCTCAATGTGAC 57.650 47.619 0.00 0.00 0.00 3.67
2526 6083 3.456277 AGACGATTCCCCTTAAGCTCAAT 59.544 43.478 0.00 0.00 0.00 2.57
2527 6084 2.838202 AGACGATTCCCCTTAAGCTCAA 59.162 45.455 0.00 0.00 0.00 3.02
2528 6085 2.168521 CAGACGATTCCCCTTAAGCTCA 59.831 50.000 0.00 0.00 0.00 4.26
2529 6086 2.483889 CCAGACGATTCCCCTTAAGCTC 60.484 54.545 0.00 0.00 0.00 4.09
2530 6087 1.486726 CCAGACGATTCCCCTTAAGCT 59.513 52.381 0.00 0.00 0.00 3.74
2531 6088 1.954927 CCAGACGATTCCCCTTAAGC 58.045 55.000 0.00 0.00 0.00 3.09
2533 6090 1.580059 AGCCAGACGATTCCCCTTAA 58.420 50.000 0.00 0.00 0.00 1.85
2535 6092 0.253327 GAAGCCAGACGATTCCCCTT 59.747 55.000 0.00 0.00 0.00 3.95
2536 6093 0.618968 AGAAGCCAGACGATTCCCCT 60.619 55.000 0.00 0.00 0.00 4.79
2538 6095 0.827368 AGAGAAGCCAGACGATTCCC 59.173 55.000 0.00 0.00 0.00 3.97
2539 6096 1.754226 AGAGAGAAGCCAGACGATTCC 59.246 52.381 0.00 0.00 0.00 3.01
2540 6097 4.846779 ATAGAGAGAAGCCAGACGATTC 57.153 45.455 0.00 0.00 0.00 2.52
2541 6098 5.606348 AAATAGAGAGAAGCCAGACGATT 57.394 39.130 0.00 0.00 0.00 3.34
2545 6102 5.233263 CGCTAAAAATAGAGAGAAGCCAGAC 59.767 44.000 0.00 0.00 0.00 3.51
2546 6103 5.352284 CGCTAAAAATAGAGAGAAGCCAGA 58.648 41.667 0.00 0.00 0.00 3.86
2547 6104 4.509600 CCGCTAAAAATAGAGAGAAGCCAG 59.490 45.833 0.00 0.00 0.00 4.85
2548 6105 4.161565 TCCGCTAAAAATAGAGAGAAGCCA 59.838 41.667 0.00 0.00 0.00 4.75
2549 6106 4.694339 TCCGCTAAAAATAGAGAGAAGCC 58.306 43.478 0.00 0.00 0.00 4.35
2550 6107 5.593010 TCTCCGCTAAAAATAGAGAGAAGC 58.407 41.667 0.00 0.00 30.30 3.86
2551 6108 7.168972 CACATCTCCGCTAAAAATAGAGAGAAG 59.831 40.741 8.93 7.85 37.04 2.85
2552 6109 6.980978 CACATCTCCGCTAAAAATAGAGAGAA 59.019 38.462 8.93 0.00 37.04 2.87
2553 6110 6.461648 CCACATCTCCGCTAAAAATAGAGAGA 60.462 42.308 7.87 7.87 37.04 3.10
2554 6111 5.694006 CCACATCTCCGCTAAAAATAGAGAG 59.306 44.000 0.00 0.00 37.04 3.20
2555 6112 5.362717 TCCACATCTCCGCTAAAAATAGAGA 59.637 40.000 0.00 0.00 37.94 3.10
2556 6113 5.601662 TCCACATCTCCGCTAAAAATAGAG 58.398 41.667 0.00 0.00 0.00 2.43
2557 6114 5.607939 TCCACATCTCCGCTAAAAATAGA 57.392 39.130 0.00 0.00 0.00 1.98
2558 6115 6.677781 TTTCCACATCTCCGCTAAAAATAG 57.322 37.500 0.00 0.00 0.00 1.73
2559 6116 6.459573 GCATTTCCACATCTCCGCTAAAAATA 60.460 38.462 0.00 0.00 0.00 1.40
2560 6117 5.679638 GCATTTCCACATCTCCGCTAAAAAT 60.680 40.000 0.00 0.00 0.00 1.82
2561 6118 4.380444 GCATTTCCACATCTCCGCTAAAAA 60.380 41.667 0.00 0.00 0.00 1.94
2564 6121 2.092968 AGCATTTCCACATCTCCGCTAA 60.093 45.455 0.00 0.00 0.00 3.09
2570 6127 0.302890 CGCGAGCATTTCCACATCTC 59.697 55.000 0.00 0.00 0.00 2.75
2596 6153 1.446272 GAAGACCACGGCTCTTCGG 60.446 63.158 10.58 0.00 35.57 4.30
2598 6155 1.671742 TGGAAGACCACGGCTCTTC 59.328 57.895 14.82 14.82 41.77 2.87
2607 6164 3.011821 ACCTCTGATCTAGTGGAAGACCA 59.988 47.826 15.63 0.00 41.60 4.02
2622 6179 0.976641 ACTCGCCATGAAACCTCTGA 59.023 50.000 0.00 0.00 0.00 3.27
2650 6207 5.220135 CGATGTCACGTTGTCATTATCGAAA 60.220 40.000 0.00 0.00 0.00 3.46
2651 6208 4.264380 CGATGTCACGTTGTCATTATCGAA 59.736 41.667 0.00 0.00 0.00 3.71
2665 6222 2.667318 GGTGGTGTGCGATGTCACG 61.667 63.158 0.00 0.00 39.73 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.