Multiple sequence alignment - TraesCS5A01G476500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G476500 chr5A 100.000 2650 0 0 1 2650 651326545 651323896 0.000000e+00 4894.0
1 TraesCS5A01G476500 chr5A 90.000 70 7 0 1162 1231 651564234 651564165 1.010000e-14 91.6
2 TraesCS5A01G476500 chr5A 88.571 70 8 0 1162 1231 651555849 651555780 4.700000e-13 86.1
3 TraesCS5A01G476500 chr5A 88.571 70 8 0 1168 1237 651569546 651569477 4.700000e-13 86.1
4 TraesCS5A01G476500 chr5D 95.046 1090 42 5 1566 2650 524910105 524909023 0.000000e+00 1703.0
5 TraesCS5A01G476500 chr5D 91.993 587 24 6 999 1574 524910705 524910131 0.000000e+00 802.0
6 TraesCS5A01G476500 chr5D 84.309 376 26 22 364 721 524911213 524910853 1.180000e-88 337.0
7 TraesCS5A01G476500 chr5B 93.040 704 25 14 971 1650 659403649 659402946 0.000000e+00 1007.0
8 TraesCS5A01G476500 chr5B 91.123 552 29 14 183 721 659404295 659403751 0.000000e+00 730.0
9 TraesCS5A01G476500 chr5B 82.857 70 12 0 1162 1231 659505977 659505908 2.200000e-06 63.9
10 TraesCS5A01G476500 chr2D 89.467 788 64 10 1876 2650 556318914 556319695 0.000000e+00 977.0
11 TraesCS5A01G476500 chr2D 84.861 251 23 6 1876 2114 556333035 556333282 3.410000e-59 239.0
12 TraesCS5A01G476500 chr2D 84.492 187 18 4 724 900 651313636 651313821 9.750000e-40 174.0
13 TraesCS5A01G476500 chr2D 81.313 198 26 4 718 904 4194256 4194059 1.640000e-32 150.0
14 TraesCS5A01G476500 chr4A 89.313 786 69 7 1876 2650 43270036 43269255 0.000000e+00 972.0
15 TraesCS5A01G476500 chr4A 79.267 791 128 30 1882 2650 622155128 622155904 1.090000e-143 520.0
16 TraesCS5A01G476500 chr4A 83.212 548 84 7 2107 2650 649015756 649015213 1.830000e-136 496.0
17 TraesCS5A01G476500 chr6B 87.532 786 81 9 1876 2650 35309941 35310720 0.000000e+00 893.0
18 TraesCS5A01G476500 chr1D 91.466 539 42 4 2114 2650 7858851 7859387 0.000000e+00 737.0
19 TraesCS5A01G476500 chr1D 81.122 196 25 5 718 902 231024465 231024271 2.130000e-31 147.0
20 TraesCS5A01G476500 chrUn 82.299 548 89 7 2107 2650 40876942 40876399 3.990000e-128 468.0
21 TraesCS5A01G476500 chr3B 82.214 551 90 7 2104 2650 754857542 754858088 3.990000e-128 468.0
22 TraesCS5A01G476500 chr2B 84.422 199 21 3 715 903 138965567 138965765 1.250000e-43 187.0
23 TraesCS5A01G476500 chr7D 83.838 198 20 5 719 905 229802465 229802661 7.540000e-41 178.0
24 TraesCS5A01G476500 chr3D 82.439 205 20 8 724 918 61601196 61600998 5.870000e-37 165.0
25 TraesCS5A01G476500 chr3D 79.891 184 17 6 722 895 614670554 614670381 1.670000e-22 117.0
26 TraesCS5A01G476500 chr6D 81.188 202 27 4 718 908 8638039 8638240 4.570000e-33 152.0
27 TraesCS5A01G476500 chr4D 80.000 125 12 10 795 906 442438837 442438961 2.190000e-11 80.5
28 TraesCS5A01G476500 chr7A 100.000 33 0 0 1201 1233 722898946 722898978 7.920000e-06 62.1
29 TraesCS5A01G476500 chr7A 100.000 33 0 0 1201 1233 722938490 722938522 7.920000e-06 62.1
30 TraesCS5A01G476500 chr7A 100.000 33 0 0 1201 1233 722988457 722988489 7.920000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G476500 chr5A 651323896 651326545 2649 True 4894.000000 4894 100.000000 1 2650 1 chr5A.!!$R1 2649
1 TraesCS5A01G476500 chr5D 524909023 524911213 2190 True 947.333333 1703 90.449333 364 2650 3 chr5D.!!$R1 2286
2 TraesCS5A01G476500 chr5B 659402946 659404295 1349 True 868.500000 1007 92.081500 183 1650 2 chr5B.!!$R2 1467
3 TraesCS5A01G476500 chr2D 556318914 556319695 781 False 977.000000 977 89.467000 1876 2650 1 chr2D.!!$F1 774
4 TraesCS5A01G476500 chr4A 43269255 43270036 781 True 972.000000 972 89.313000 1876 2650 1 chr4A.!!$R1 774
5 TraesCS5A01G476500 chr4A 622155128 622155904 776 False 520.000000 520 79.267000 1882 2650 1 chr4A.!!$F1 768
6 TraesCS5A01G476500 chr4A 649015213 649015756 543 True 496.000000 496 83.212000 2107 2650 1 chr4A.!!$R2 543
7 TraesCS5A01G476500 chr6B 35309941 35310720 779 False 893.000000 893 87.532000 1876 2650 1 chr6B.!!$F1 774
8 TraesCS5A01G476500 chr1D 7858851 7859387 536 False 737.000000 737 91.466000 2114 2650 1 chr1D.!!$F1 536
9 TraesCS5A01G476500 chrUn 40876399 40876942 543 True 468.000000 468 82.299000 2107 2650 1 chrUn.!!$R1 543
10 TraesCS5A01G476500 chr3B 754857542 754858088 546 False 468.000000 468 82.214000 2104 2650 1 chr3B.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.036294 GCATAGGATACCGGCCTTCC 60.036 60.0 0.0 5.46 36.96 3.46 F
967 1018 0.178767 CCATGAGTGAATGAGGCCGA 59.821 55.0 0.0 0.00 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 1567 0.324275 GTCAGGCCCAGAGAGAGAGT 60.324 60.000 0.00 0.00 0.0 3.24 R
1974 2097 2.074576 CTCTCTCTGGACGTTCGTACA 58.925 52.381 9.88 9.88 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.429043 ACGAATAACACCGCATCGT 57.571 47.368 0.00 0.00 41.44 3.73
20 21 0.996462 ACGAATAACACCGCATCGTG 59.004 50.000 0.00 0.00 44.20 4.35
21 22 0.315059 CGAATAACACCGCATCGTGC 60.315 55.000 0.58 0.58 40.69 5.34
22 23 1.006832 GAATAACACCGCATCGTGCT 58.993 50.000 8.07 0.00 42.25 4.40
23 24 1.004927 GAATAACACCGCATCGTGCTC 60.005 52.381 8.07 0.00 42.25 4.26
24 25 1.145759 ATAACACCGCATCGTGCTCG 61.146 55.000 0.81 0.81 42.25 5.03
25 26 2.480853 TAACACCGCATCGTGCTCGT 62.481 55.000 8.17 2.39 42.25 4.18
26 27 3.112075 CACCGCATCGTGCTCGTT 61.112 61.111 8.17 0.00 42.25 3.85
27 28 2.357034 ACCGCATCGTGCTCGTTT 60.357 55.556 8.17 0.00 42.25 3.60
28 29 2.380410 ACCGCATCGTGCTCGTTTC 61.380 57.895 8.17 0.00 42.25 2.78
29 30 2.379634 CCGCATCGTGCTCGTTTCA 61.380 57.895 8.17 0.00 42.25 2.69
30 31 1.491127 CGCATCGTGCTCGTTTCAA 59.509 52.632 8.17 0.00 42.25 2.69
31 32 0.095245 CGCATCGTGCTCGTTTCAAT 59.905 50.000 8.17 0.00 42.25 2.57
32 33 1.464023 CGCATCGTGCTCGTTTCAATT 60.464 47.619 8.17 0.00 42.25 2.32
33 34 1.906966 GCATCGTGCTCGTTTCAATTG 59.093 47.619 8.17 0.00 40.96 2.32
34 35 1.906966 CATCGTGCTCGTTTCAATTGC 59.093 47.619 8.17 0.00 38.33 3.56
35 36 1.225855 TCGTGCTCGTTTCAATTGCT 58.774 45.000 8.17 0.00 38.33 3.91
36 37 1.601903 TCGTGCTCGTTTCAATTGCTT 59.398 42.857 8.17 0.00 38.33 3.91
37 38 2.803386 TCGTGCTCGTTTCAATTGCTTA 59.197 40.909 8.17 0.00 38.33 3.09
38 39 3.248841 TCGTGCTCGTTTCAATTGCTTAA 59.751 39.130 8.17 0.00 38.33 1.85
39 40 4.083537 TCGTGCTCGTTTCAATTGCTTAAT 60.084 37.500 8.17 0.00 38.33 1.40
40 41 4.616802 CGTGCTCGTTTCAATTGCTTAATT 59.383 37.500 0.00 0.00 0.00 1.40
41 42 5.441872 CGTGCTCGTTTCAATTGCTTAATTG 60.442 40.000 0.00 6.44 40.55 2.32
42 43 4.922692 TGCTCGTTTCAATTGCTTAATTGG 59.077 37.500 11.51 0.00 39.84 3.16
43 44 5.160641 GCTCGTTTCAATTGCTTAATTGGA 58.839 37.500 11.51 1.94 39.84 3.53
44 45 5.633182 GCTCGTTTCAATTGCTTAATTGGAA 59.367 36.000 11.51 7.44 39.84 3.53
49 50 4.804108 TCAATTGCTTAATTGGAACACCG 58.196 39.130 11.51 0.00 39.29 4.94
50 51 4.279671 TCAATTGCTTAATTGGAACACCGT 59.720 37.500 11.51 0.00 39.29 4.83
51 52 4.864704 ATTGCTTAATTGGAACACCGTT 57.135 36.364 0.00 0.00 39.29 4.44
52 53 3.634568 TGCTTAATTGGAACACCGTTG 57.365 42.857 0.00 0.00 39.29 4.10
53 54 3.215151 TGCTTAATTGGAACACCGTTGA 58.785 40.909 0.00 0.00 39.29 3.18
54 55 3.003897 TGCTTAATTGGAACACCGTTGAC 59.996 43.478 0.00 0.00 39.29 3.18
55 56 3.252458 GCTTAATTGGAACACCGTTGACT 59.748 43.478 0.00 0.00 39.29 3.41
56 57 4.453136 GCTTAATTGGAACACCGTTGACTA 59.547 41.667 0.00 0.00 39.29 2.59
57 58 5.390567 GCTTAATTGGAACACCGTTGACTAG 60.391 44.000 0.00 0.00 39.29 2.57
58 59 4.345859 AATTGGAACACCGTTGACTAGA 57.654 40.909 0.00 0.00 39.29 2.43
59 60 3.380479 TTGGAACACCGTTGACTAGAG 57.620 47.619 0.00 0.00 39.29 2.43
60 61 1.000506 TGGAACACCGTTGACTAGAGC 59.999 52.381 0.00 0.00 0.00 4.09
61 62 1.000506 GGAACACCGTTGACTAGAGCA 59.999 52.381 0.00 0.00 0.00 4.26
62 63 2.547218 GGAACACCGTTGACTAGAGCAA 60.547 50.000 0.00 0.00 0.00 3.91
63 64 2.902705 ACACCGTTGACTAGAGCAAA 57.097 45.000 0.00 0.00 0.00 3.68
64 65 3.188159 ACACCGTTGACTAGAGCAAAA 57.812 42.857 0.00 0.00 0.00 2.44
65 66 2.870411 ACACCGTTGACTAGAGCAAAAC 59.130 45.455 0.00 0.00 0.00 2.43
66 67 3.131396 CACCGTTGACTAGAGCAAAACT 58.869 45.455 0.00 0.00 0.00 2.66
67 68 4.202182 ACACCGTTGACTAGAGCAAAACTA 60.202 41.667 0.00 0.00 0.00 2.24
68 69 4.929808 CACCGTTGACTAGAGCAAAACTAT 59.070 41.667 0.00 0.00 0.00 2.12
69 70 4.929808 ACCGTTGACTAGAGCAAAACTATG 59.070 41.667 0.00 0.00 0.00 2.23
70 71 5.168569 CCGTTGACTAGAGCAAAACTATGA 58.831 41.667 0.00 0.00 0.00 2.15
71 72 5.637810 CCGTTGACTAGAGCAAAACTATGAA 59.362 40.000 0.00 0.00 0.00 2.57
72 73 6.147164 CCGTTGACTAGAGCAAAACTATGAAA 59.853 38.462 0.00 0.00 0.00 2.69
73 74 7.307751 CCGTTGACTAGAGCAAAACTATGAAAA 60.308 37.037 0.00 0.00 0.00 2.29
74 75 8.230486 CGTTGACTAGAGCAAAACTATGAAAAT 58.770 33.333 0.00 0.00 0.00 1.82
75 76 9.334693 GTTGACTAGAGCAAAACTATGAAAATG 57.665 33.333 0.00 0.00 0.00 2.32
76 77 8.044060 TGACTAGAGCAAAACTATGAAAATGG 57.956 34.615 0.00 0.00 0.00 3.16
77 78 6.856895 ACTAGAGCAAAACTATGAAAATGGC 58.143 36.000 0.00 0.00 0.00 4.40
78 79 5.990120 AGAGCAAAACTATGAAAATGGCT 57.010 34.783 0.00 0.00 0.00 4.75
79 80 7.829211 ACTAGAGCAAAACTATGAAAATGGCTA 59.171 33.333 0.00 0.00 0.00 3.93
80 81 7.466746 AGAGCAAAACTATGAAAATGGCTAA 57.533 32.000 0.00 0.00 0.00 3.09
81 82 7.315890 AGAGCAAAACTATGAAAATGGCTAAC 58.684 34.615 0.00 0.00 0.00 2.34
82 83 6.398095 AGCAAAACTATGAAAATGGCTAACC 58.602 36.000 0.00 0.00 0.00 2.85
94 95 3.862877 TGGCTAACCAGATGCATACAT 57.137 42.857 0.00 0.00 42.67 2.29
95 96 4.972751 TGGCTAACCAGATGCATACATA 57.027 40.909 0.00 0.00 42.67 2.29
96 97 5.303259 TGGCTAACCAGATGCATACATAA 57.697 39.130 0.00 0.00 42.67 1.90
97 98 5.879763 TGGCTAACCAGATGCATACATAAT 58.120 37.500 0.00 0.00 42.67 1.28
98 99 6.306199 TGGCTAACCAGATGCATACATAATT 58.694 36.000 0.00 0.00 42.67 1.40
99 100 7.457561 TGGCTAACCAGATGCATACATAATTA 58.542 34.615 0.00 0.00 42.67 1.40
100 101 7.941790 TGGCTAACCAGATGCATACATAATTAA 59.058 33.333 0.00 0.00 42.67 1.40
101 102 8.454106 GGCTAACCAGATGCATACATAATTAAG 58.546 37.037 0.00 0.00 34.01 1.85
102 103 7.965107 GCTAACCAGATGCATACATAATTAAGC 59.035 37.037 0.00 0.00 36.35 3.09
103 104 7.822161 AACCAGATGCATACATAATTAAGCA 57.178 32.000 0.00 0.00 36.35 3.91
104 105 8.413309 AACCAGATGCATACATAATTAAGCAT 57.587 30.769 0.00 0.00 44.50 3.79
105 106 9.519191 AACCAGATGCATACATAATTAAGCATA 57.481 29.630 0.00 0.00 42.18 3.14
106 107 9.170734 ACCAGATGCATACATAATTAAGCATAG 57.829 33.333 0.00 0.00 42.18 2.23
107 108 8.618677 CCAGATGCATACATAATTAAGCATAGG 58.381 37.037 0.00 0.00 42.18 2.57
108 109 9.387257 CAGATGCATACATAATTAAGCATAGGA 57.613 33.333 0.00 0.00 42.18 2.94
112 113 9.613428 TGCATACATAATTAAGCATAGGATACC 57.387 33.333 0.00 0.00 37.17 2.73
113 114 8.765219 GCATACATAATTAAGCATAGGATACCG 58.235 37.037 0.00 0.00 37.17 4.02
114 115 9.261180 CATACATAATTAAGCATAGGATACCGG 57.739 37.037 0.00 0.00 37.17 5.28
115 116 6.113411 ACATAATTAAGCATAGGATACCGGC 58.887 40.000 0.00 0.00 37.17 6.13
116 117 3.629142 ATTAAGCATAGGATACCGGCC 57.371 47.619 0.00 0.00 37.17 6.13
117 118 2.320681 TAAGCATAGGATACCGGCCT 57.679 50.000 0.00 2.04 39.56 5.19
118 119 1.435256 AAGCATAGGATACCGGCCTT 58.565 50.000 0.00 0.00 36.96 4.35
119 120 0.977395 AGCATAGGATACCGGCCTTC 59.023 55.000 0.00 0.00 36.96 3.46
120 121 0.036294 GCATAGGATACCGGCCTTCC 60.036 60.000 0.00 5.46 36.96 3.46
121 122 1.645710 CATAGGATACCGGCCTTCCT 58.354 55.000 20.51 20.51 42.49 3.36
122 123 1.550976 CATAGGATACCGGCCTTCCTC 59.449 57.143 20.35 1.11 40.37 3.71
123 124 0.858369 TAGGATACCGGCCTTCCTCT 59.142 55.000 20.35 4.73 40.37 3.69
124 125 0.858369 AGGATACCGGCCTTCCTCTA 59.142 55.000 13.27 0.00 34.80 2.43
125 126 1.219724 AGGATACCGGCCTTCCTCTAA 59.780 52.381 13.27 0.00 34.80 2.10
126 127 2.044758 GGATACCGGCCTTCCTCTAAA 58.955 52.381 0.00 0.00 0.00 1.85
127 128 2.436911 GGATACCGGCCTTCCTCTAAAA 59.563 50.000 0.00 0.00 0.00 1.52
128 129 3.118149 GGATACCGGCCTTCCTCTAAAAA 60.118 47.826 0.00 0.00 0.00 1.94
129 130 4.445879 GGATACCGGCCTTCCTCTAAAAAT 60.446 45.833 0.00 0.00 0.00 1.82
130 131 3.000684 ACCGGCCTTCCTCTAAAAATC 57.999 47.619 0.00 0.00 0.00 2.17
131 132 2.576648 ACCGGCCTTCCTCTAAAAATCT 59.423 45.455 0.00 0.00 0.00 2.40
132 133 3.010250 ACCGGCCTTCCTCTAAAAATCTT 59.990 43.478 0.00 0.00 0.00 2.40
133 134 3.378427 CCGGCCTTCCTCTAAAAATCTTG 59.622 47.826 0.00 0.00 0.00 3.02
134 135 3.378427 CGGCCTTCCTCTAAAAATCTTGG 59.622 47.826 0.00 0.00 0.00 3.61
135 136 4.344978 GGCCTTCCTCTAAAAATCTTGGT 58.655 43.478 0.00 0.00 0.00 3.67
136 137 5.506708 GGCCTTCCTCTAAAAATCTTGGTA 58.493 41.667 0.00 0.00 0.00 3.25
137 138 5.949952 GGCCTTCCTCTAAAAATCTTGGTAA 59.050 40.000 0.00 0.00 0.00 2.85
138 139 6.436218 GGCCTTCCTCTAAAAATCTTGGTAAA 59.564 38.462 0.00 0.00 0.00 2.01
139 140 7.039293 GGCCTTCCTCTAAAAATCTTGGTAAAA 60.039 37.037 0.00 0.00 0.00 1.52
140 141 8.029522 GCCTTCCTCTAAAAATCTTGGTAAAAG 58.970 37.037 0.00 0.00 0.00 2.27
141 142 8.523658 CCTTCCTCTAAAAATCTTGGTAAAAGG 58.476 37.037 0.00 0.00 0.00 3.11
142 143 8.417273 TTCCTCTAAAAATCTTGGTAAAAGGG 57.583 34.615 0.00 0.00 0.00 3.95
143 144 7.761608 TCCTCTAAAAATCTTGGTAAAAGGGA 58.238 34.615 0.00 0.00 0.00 4.20
144 145 7.888546 TCCTCTAAAAATCTTGGTAAAAGGGAG 59.111 37.037 0.00 0.00 0.00 4.30
145 146 7.363007 CCTCTAAAAATCTTGGTAAAAGGGAGC 60.363 40.741 0.00 0.00 0.00 4.70
146 147 7.007723 TCTAAAAATCTTGGTAAAAGGGAGCA 58.992 34.615 0.00 0.00 0.00 4.26
147 148 5.728637 AAAATCTTGGTAAAAGGGAGCAG 57.271 39.130 0.00 0.00 0.00 4.24
148 149 2.200373 TCTTGGTAAAAGGGAGCAGC 57.800 50.000 0.00 0.00 0.00 5.25
149 150 1.423541 TCTTGGTAAAAGGGAGCAGCA 59.576 47.619 0.00 0.00 0.00 4.41
150 151 2.158534 TCTTGGTAAAAGGGAGCAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
151 152 1.616159 TGGTAAAAGGGAGCAGCAAC 58.384 50.000 0.00 0.00 0.00 4.17
152 153 1.133637 TGGTAAAAGGGAGCAGCAACA 60.134 47.619 0.00 0.00 0.00 3.33
153 154 1.269723 GGTAAAAGGGAGCAGCAACAC 59.730 52.381 0.00 0.00 0.00 3.32
154 155 1.269723 GTAAAAGGGAGCAGCAACACC 59.730 52.381 0.00 0.00 0.00 4.16
155 156 0.396974 AAAAGGGAGCAGCAACACCA 60.397 50.000 0.00 0.00 0.00 4.17
156 157 0.396974 AAAGGGAGCAGCAACACCAA 60.397 50.000 0.00 0.00 0.00 3.67
157 158 1.109323 AAGGGAGCAGCAACACCAAC 61.109 55.000 0.00 0.00 0.00 3.77
158 159 1.529244 GGGAGCAGCAACACCAACT 60.529 57.895 0.00 0.00 0.00 3.16
159 160 0.250727 GGGAGCAGCAACACCAACTA 60.251 55.000 0.00 0.00 0.00 2.24
160 161 1.604604 GGAGCAGCAACACCAACTAA 58.395 50.000 0.00 0.00 0.00 2.24
161 162 1.266989 GGAGCAGCAACACCAACTAAC 59.733 52.381 0.00 0.00 0.00 2.34
162 163 2.222027 GAGCAGCAACACCAACTAACT 58.778 47.619 0.00 0.00 0.00 2.24
163 164 3.399330 GAGCAGCAACACCAACTAACTA 58.601 45.455 0.00 0.00 0.00 2.24
164 165 3.403038 AGCAGCAACACCAACTAACTAG 58.597 45.455 0.00 0.00 0.00 2.57
165 166 2.484264 GCAGCAACACCAACTAACTAGG 59.516 50.000 0.00 0.00 0.00 3.02
166 167 3.740115 CAGCAACACCAACTAACTAGGT 58.260 45.455 0.00 0.00 35.65 3.08
175 176 7.823149 CACCAACTAACTAGGTGTACATAAC 57.177 40.000 0.00 0.00 45.95 1.89
176 177 7.380536 CACCAACTAACTAGGTGTACATAACA 58.619 38.462 0.00 0.00 45.95 2.41
177 178 7.874016 CACCAACTAACTAGGTGTACATAACAA 59.126 37.037 0.00 0.00 45.95 2.83
178 179 8.092687 ACCAACTAACTAGGTGTACATAACAAG 58.907 37.037 0.00 0.00 40.63 3.16
179 180 8.092687 CCAACTAACTAGGTGTACATAACAAGT 58.907 37.037 0.00 0.00 40.63 3.16
180 181 8.922676 CAACTAACTAGGTGTACATAACAAGTG 58.077 37.037 0.00 0.00 40.63 3.16
181 182 8.186709 ACTAACTAGGTGTACATAACAAGTGT 57.813 34.615 0.00 0.00 40.63 3.55
182 183 8.302438 ACTAACTAGGTGTACATAACAAGTGTC 58.698 37.037 0.00 0.00 40.63 3.67
183 184 6.659745 ACTAGGTGTACATAACAAGTGTCA 57.340 37.500 0.00 0.00 40.63 3.58
184 185 6.688578 ACTAGGTGTACATAACAAGTGTCAG 58.311 40.000 0.00 0.00 40.63 3.51
185 186 5.546621 AGGTGTACATAACAAGTGTCAGT 57.453 39.130 0.00 0.00 40.63 3.41
186 187 5.539048 AGGTGTACATAACAAGTGTCAGTC 58.461 41.667 0.00 0.00 40.63 3.51
187 188 5.069914 AGGTGTACATAACAAGTGTCAGTCA 59.930 40.000 0.00 0.00 40.63 3.41
202 203 2.103771 TCAGTCAGCTATGAAGGATGGC 59.896 50.000 0.00 0.00 38.83 4.40
240 241 3.969976 TCCAATCTAGTGAAGGATGGGAG 59.030 47.826 0.00 0.00 37.20 4.30
272 274 8.241497 TCTAATGAACTCCGCCTACTTATTTA 57.759 34.615 0.00 0.00 0.00 1.40
278 280 5.681639 ACTCCGCCTACTTATTTATTGCTT 58.318 37.500 0.00 0.00 0.00 3.91
279 281 5.527582 ACTCCGCCTACTTATTTATTGCTTG 59.472 40.000 0.00 0.00 0.00 4.01
280 282 5.676552 TCCGCCTACTTATTTATTGCTTGA 58.323 37.500 0.00 0.00 0.00 3.02
281 283 5.758296 TCCGCCTACTTATTTATTGCTTGAG 59.242 40.000 0.00 0.00 0.00 3.02
282 284 5.527582 CCGCCTACTTATTTATTGCTTGAGT 59.472 40.000 0.00 0.00 0.00 3.41
283 285 6.704493 CCGCCTACTTATTTATTGCTTGAGTA 59.296 38.462 0.00 0.00 0.00 2.59
284 286 7.095607 CCGCCTACTTATTTATTGCTTGAGTAG 60.096 40.741 0.00 0.00 36.49 2.57
285 287 7.652105 CGCCTACTTATTTATTGCTTGAGTAGA 59.348 37.037 8.70 0.00 38.08 2.59
286 288 9.495572 GCCTACTTATTTATTGCTTGAGTAGAT 57.504 33.333 8.70 0.00 38.08 1.98
291 293 9.443283 CTTATTTATTGCTTGAGTAGATGTTGC 57.557 33.333 0.00 0.00 0.00 4.17
323 325 8.000780 ACCAATATAAGAACTTCATTTGAGGC 57.999 34.615 0.00 0.00 0.00 4.70
330 332 3.914426 ACTTCATTTGAGGCGAGGTAT 57.086 42.857 0.00 0.00 0.00 2.73
333 339 5.741011 ACTTCATTTGAGGCGAGGTATTAA 58.259 37.500 0.00 0.00 0.00 1.40
342 348 3.449737 AGGCGAGGTATTAACTAGTGCAA 59.550 43.478 0.00 0.00 0.00 4.08
355 361 8.547967 TTAACTAGTGCAATACAAAGAAGGAG 57.452 34.615 0.00 0.00 0.00 3.69
356 362 6.115448 ACTAGTGCAATACAAAGAAGGAGT 57.885 37.500 0.00 0.00 0.00 3.85
358 364 7.097834 ACTAGTGCAATACAAAGAAGGAGTAC 58.902 38.462 0.00 0.00 0.00 2.73
359 365 6.115448 AGTGCAATACAAAGAAGGAGTACT 57.885 37.500 0.00 0.00 0.00 2.73
441 455 1.728971 CGCAGTCAGTCAGATTTCACC 59.271 52.381 0.00 0.00 0.00 4.02
461 479 1.005340 CGGAGCTGCAAACTCATCTC 58.995 55.000 16.04 2.30 35.79 2.75
462 480 1.405256 CGGAGCTGCAAACTCATCTCT 60.405 52.381 16.04 0.00 35.79 3.10
564 585 1.728971 GATCTCAACCAACGAGCAGTG 59.271 52.381 0.00 0.00 0.00 3.66
580 609 2.810400 GCAGTGGCTTGTCAACTCCTAA 60.810 50.000 0.00 0.00 36.96 2.69
596 625 1.352156 CTAAGAAGTCGCACCACGCC 61.352 60.000 0.00 0.00 43.23 5.68
666 695 5.527214 TGATTGAGAGACTTTCGCAAAAGAA 59.473 36.000 3.65 0.00 46.42 2.52
722 752 9.933723 TTTTGAAAGGTCCACTAGTACTATAAC 57.066 33.333 2.33 0.00 0.00 1.89
723 753 7.651027 TGAAAGGTCCACTAGTACTATAACC 57.349 40.000 2.33 8.66 0.00 2.85
724 754 7.184161 TGAAAGGTCCACTAGTACTATAACCA 58.816 38.462 18.06 3.24 0.00 3.67
725 755 7.675195 TGAAAGGTCCACTAGTACTATAACCAA 59.325 37.037 18.06 5.55 0.00 3.67
727 757 7.598759 AGGTCCACTAGTACTATAACCAATG 57.401 40.000 18.06 3.91 0.00 2.82
742 772 7.775397 ATAACCAATGAAAACAATAGCATGC 57.225 32.000 10.51 10.51 0.00 4.06
743 773 5.410355 ACCAATGAAAACAATAGCATGCT 57.590 34.783 25.99 25.99 0.00 3.79
744 774 6.528537 ACCAATGAAAACAATAGCATGCTA 57.471 33.333 28.72 28.72 0.00 3.49
745 775 6.332630 ACCAATGAAAACAATAGCATGCTAC 58.667 36.000 29.11 14.96 0.00 3.58
748 778 7.201461 CCAATGAAAACAATAGCATGCTACAAC 60.201 37.037 29.11 15.64 0.00 3.32
753 783 8.606040 AAAACAATAGCATGCTACAACAAAAT 57.394 26.923 29.11 9.55 0.00 1.82
754 784 9.703892 AAAACAATAGCATGCTACAACAAAATA 57.296 25.926 29.11 5.71 0.00 1.40
755 785 8.915871 AACAATAGCATGCTACAACAAAATAG 57.084 30.769 29.11 11.50 0.00 1.73
756 786 6.974622 ACAATAGCATGCTACAACAAAATAGC 59.025 34.615 29.11 0.00 43.46 2.97
757 787 4.019919 AGCATGCTACAACAAAATAGCG 57.980 40.909 21.21 0.00 45.65 4.26
758 788 2.531508 GCATGCTACAACAAAATAGCGC 59.468 45.455 11.37 0.00 45.65 5.92
759 789 2.519002 TGCTACAACAAAATAGCGCG 57.481 45.000 0.00 0.00 45.65 6.86
760 790 1.129624 TGCTACAACAAAATAGCGCGG 59.870 47.619 8.83 0.00 45.65 6.46
761 791 1.395608 GCTACAACAAAATAGCGCGGA 59.604 47.619 8.83 0.00 34.87 5.54
762 792 2.786700 GCTACAACAAAATAGCGCGGAC 60.787 50.000 8.83 0.00 34.87 4.79
763 793 0.519961 ACAACAAAATAGCGCGGACC 59.480 50.000 8.83 0.00 0.00 4.46
764 794 0.802494 CAACAAAATAGCGCGGACCT 59.198 50.000 8.83 0.00 0.00 3.85
765 795 1.199097 CAACAAAATAGCGCGGACCTT 59.801 47.619 8.83 0.00 0.00 3.50
766 796 2.389962 ACAAAATAGCGCGGACCTTA 57.610 45.000 8.83 0.00 0.00 2.69
767 797 2.702261 ACAAAATAGCGCGGACCTTAA 58.298 42.857 8.83 0.00 0.00 1.85
768 798 3.075884 ACAAAATAGCGCGGACCTTAAA 58.924 40.909 8.83 0.00 0.00 1.52
769 799 3.502979 ACAAAATAGCGCGGACCTTAAAA 59.497 39.130 8.83 0.00 0.00 1.52
770 800 4.157105 ACAAAATAGCGCGGACCTTAAAAT 59.843 37.500 8.83 0.00 0.00 1.82
771 801 5.354792 ACAAAATAGCGCGGACCTTAAAATA 59.645 36.000 8.83 0.00 0.00 1.40
772 802 6.038936 ACAAAATAGCGCGGACCTTAAAATAT 59.961 34.615 8.83 0.00 0.00 1.28
773 803 5.607119 AATAGCGCGGACCTTAAAATATG 57.393 39.130 8.83 0.00 0.00 1.78
774 804 1.602377 AGCGCGGACCTTAAAATATGC 59.398 47.619 8.83 0.00 0.00 3.14
775 805 1.602377 GCGCGGACCTTAAAATATGCT 59.398 47.619 8.83 0.00 0.00 3.79
776 806 2.803956 GCGCGGACCTTAAAATATGCTA 59.196 45.455 8.83 0.00 0.00 3.49
777 807 3.435671 GCGCGGACCTTAAAATATGCTAT 59.564 43.478 8.83 0.00 0.00 2.97
778 808 4.083484 GCGCGGACCTTAAAATATGCTATT 60.083 41.667 8.83 0.00 0.00 1.73
779 809 5.121142 GCGCGGACCTTAAAATATGCTATTA 59.879 40.000 8.83 0.00 0.00 0.98
780 810 6.672357 GCGCGGACCTTAAAATATGCTATTAG 60.672 42.308 8.83 0.00 0.00 1.73
781 811 6.543736 GCGGACCTTAAAATATGCTATTAGC 58.456 40.000 8.80 8.80 42.82 3.09
795 825 4.752224 GCTATTAGCATGTTATATCGCGC 58.248 43.478 10.83 0.00 41.89 6.86
796 826 4.504461 GCTATTAGCATGTTATATCGCGCT 59.496 41.667 10.83 0.00 41.89 5.92
797 827 5.685954 GCTATTAGCATGTTATATCGCGCTA 59.314 40.000 10.83 0.00 41.89 4.26
798 828 6.363626 GCTATTAGCATGTTATATCGCGCTAT 59.636 38.462 10.83 7.70 41.89 2.97
799 829 7.537649 GCTATTAGCATGTTATATCGCGCTATA 59.462 37.037 10.83 4.63 41.89 1.31
800 830 7.859613 ATTAGCATGTTATATCGCGCTATAG 57.140 36.000 5.56 0.00 32.44 1.31
801 831 4.045104 AGCATGTTATATCGCGCTATAGC 58.955 43.478 15.09 15.09 37.78 2.97
816 846 5.158101 GCTATAGCGTGATATTAGCGAGA 57.842 43.478 9.40 0.00 35.78 4.04
817 847 4.965158 GCTATAGCGTGATATTAGCGAGAC 59.035 45.833 9.40 0.00 35.78 3.36
818 848 2.317679 AGCGTGATATTAGCGAGACG 57.682 50.000 0.00 0.00 35.78 4.18
819 849 1.602851 AGCGTGATATTAGCGAGACGT 59.397 47.619 0.00 0.00 35.78 4.34
820 850 2.033049 AGCGTGATATTAGCGAGACGTT 59.967 45.455 0.00 0.00 35.78 3.99
821 851 3.249320 AGCGTGATATTAGCGAGACGTTA 59.751 43.478 0.00 0.00 35.78 3.18
822 852 4.083431 AGCGTGATATTAGCGAGACGTTAT 60.083 41.667 0.00 0.00 35.78 1.89
823 853 5.121298 AGCGTGATATTAGCGAGACGTTATA 59.879 40.000 0.00 0.00 35.78 0.98
824 854 5.224720 GCGTGATATTAGCGAGACGTTATAC 59.775 44.000 0.00 0.00 0.00 1.47
825 855 6.301861 CGTGATATTAGCGAGACGTTATACA 58.698 40.000 0.00 0.00 0.00 2.29
826 856 6.793680 CGTGATATTAGCGAGACGTTATACAA 59.206 38.462 0.00 0.00 0.00 2.41
827 857 7.480855 CGTGATATTAGCGAGACGTTATACAAT 59.519 37.037 0.00 0.00 0.00 2.71
828 858 9.764870 GTGATATTAGCGAGACGTTATACAATA 57.235 33.333 0.00 0.00 0.00 1.90
858 888 6.624352 TTAGCAAGGTCATTCTCAATATGC 57.376 37.500 0.00 0.00 0.00 3.14
859 889 4.789807 AGCAAGGTCATTCTCAATATGCT 58.210 39.130 0.00 0.00 36.83 3.79
860 890 5.933617 AGCAAGGTCATTCTCAATATGCTA 58.066 37.500 0.00 0.00 39.61 3.49
861 891 6.540995 AGCAAGGTCATTCTCAATATGCTAT 58.459 36.000 0.00 0.00 39.61 2.97
862 892 7.002879 AGCAAGGTCATTCTCAATATGCTATT 58.997 34.615 0.00 0.00 39.61 1.73
863 893 8.159447 AGCAAGGTCATTCTCAATATGCTATTA 58.841 33.333 0.00 0.00 39.61 0.98
864 894 8.449397 GCAAGGTCATTCTCAATATGCTATTAG 58.551 37.037 0.00 0.00 0.00 1.73
865 895 8.449397 CAAGGTCATTCTCAATATGCTATTAGC 58.551 37.037 8.80 8.80 42.82 3.09
866 896 6.815641 AGGTCATTCTCAATATGCTATTAGCG 59.184 38.462 10.94 0.00 46.26 4.26
867 897 6.813649 GGTCATTCTCAATATGCTATTAGCGA 59.186 38.462 10.94 2.18 46.26 4.93
868 898 7.201478 GGTCATTCTCAATATGCTATTAGCGAC 60.201 40.741 10.94 7.15 46.26 5.19
869 899 6.528072 TCATTCTCAATATGCTATTAGCGACG 59.472 38.462 10.94 0.00 46.26 5.12
870 900 4.166523 TCTCAATATGCTATTAGCGACGC 58.833 43.478 13.03 13.03 46.26 5.19
871 901 4.082733 TCTCAATATGCTATTAGCGACGCT 60.083 41.667 27.45 27.45 46.26 5.07
872 902 5.123344 TCTCAATATGCTATTAGCGACGCTA 59.877 40.000 25.04 25.04 46.26 4.26
873 903 5.891451 TCAATATGCTATTAGCGACGCTAT 58.109 37.500 28.67 19.98 46.26 2.97
874 904 7.012044 TCTCAATATGCTATTAGCGACGCTATA 59.988 37.037 28.67 18.37 46.26 1.31
875 905 7.132863 TCAATATGCTATTAGCGACGCTATAG 58.867 38.462 28.67 26.76 46.26 1.31
876 906 3.132629 TGCTATTAGCGACGCTATAGC 57.867 47.619 34.54 34.54 46.26 2.97
890 920 3.979984 GCTATAGCGCGCTATTCTTTTC 58.020 45.455 46.76 28.33 39.65 2.29
891 921 3.428870 GCTATAGCGCGCTATTCTTTTCA 59.571 43.478 46.76 30.62 39.65 2.69
892 922 4.084537 GCTATAGCGCGCTATTCTTTTCAA 60.085 41.667 46.76 29.99 39.65 2.69
893 923 5.389935 GCTATAGCGCGCTATTCTTTTCAAT 60.390 40.000 46.76 29.13 39.65 2.57
894 924 3.056952 AGCGCGCTATTCTTTTCAATG 57.943 42.857 35.79 0.00 0.00 2.82
895 925 2.677836 AGCGCGCTATTCTTTTCAATGA 59.322 40.909 35.79 0.00 0.00 2.57
896 926 2.778386 GCGCGCTATTCTTTTCAATGAC 59.222 45.455 26.67 0.00 0.00 3.06
902 932 7.527516 CGCGCTATTCTTTTCAATGACTATAAC 59.472 37.037 5.56 0.00 0.00 1.89
903 933 8.335356 GCGCTATTCTTTTCAATGACTATAACA 58.665 33.333 0.00 0.00 0.00 2.41
946 977 7.947282 AGTCTATCATTCTCCAAGCTAACTAC 58.053 38.462 0.00 0.00 0.00 2.73
948 979 4.755266 TCATTCTCCAAGCTAACTACCC 57.245 45.455 0.00 0.00 0.00 3.69
957 1008 3.116096 AGCTAACTACCCCATGAGTGA 57.884 47.619 0.00 0.00 0.00 3.41
961 1012 4.141711 GCTAACTACCCCATGAGTGAATGA 60.142 45.833 0.00 0.00 0.00 2.57
966 1017 0.816825 CCCATGAGTGAATGAGGCCG 60.817 60.000 0.00 0.00 0.00 6.13
967 1018 0.178767 CCATGAGTGAATGAGGCCGA 59.821 55.000 0.00 0.00 0.00 5.54
997 1055 1.539341 CGTCGTCGTCGTCTAGTAGA 58.461 55.000 3.67 0.00 38.33 2.59
1004 1062 3.121944 GTCGTCGTCTAGTAGAACAACGA 59.878 47.826 20.41 20.41 39.77 3.85
1023 1081 3.916392 AACGCGAAGAGCTCCACCG 62.916 63.158 15.93 12.53 45.59 4.94
1099 1166 1.531423 CATAGCCCATGAGGTGATGC 58.469 55.000 0.00 0.00 36.69 3.91
1267 1340 4.862092 CGATCAGCGAGCAGGCGT 62.862 66.667 0.00 0.00 44.57 5.68
1468 1544 2.328099 GGCTTGGACCTGAACGCTG 61.328 63.158 0.00 0.00 0.00 5.18
1491 1567 4.039092 GCTGAGCAGGCCCTGGAA 62.039 66.667 13.78 0.00 31.21 3.53
1542 1618 2.270986 GGTGGGCTGCTGTTCCTTG 61.271 63.158 0.00 0.00 0.00 3.61
1546 1622 2.253452 GCTGCTGTTCCTTGTGCG 59.747 61.111 0.00 0.00 0.00 5.34
1613 1727 8.357402 GTTTCTTTCTTGTACAATATTGGTGGT 58.643 33.333 19.37 1.15 0.00 4.16
1643 1759 8.545325 CAATTGATTGATTTGGATTTCCACCCC 61.545 40.741 0.00 0.00 42.11 4.95
1675 1791 7.065120 AGATTGATTTGGGTTTGTGAATTGA 57.935 32.000 0.00 0.00 0.00 2.57
1828 1944 2.161609 GCGAATGGATTCCTCGTGTTTT 59.838 45.455 13.86 0.00 35.06 2.43
1855 1971 1.538849 CCACTCTTTGCAAAACAGCCC 60.539 52.381 13.84 0.00 0.00 5.19
1880 1999 5.125100 AGAATTGTTCGCAATGTGAATGT 57.875 34.783 12.62 0.00 46.23 2.71
1887 2006 5.008118 TGTTCGCAATGTGAATGTGTAAAGA 59.992 36.000 12.62 0.00 34.54 2.52
1911 2030 6.427441 AGTCTCAACTCCTATACACATGAGA 58.573 40.000 0.00 0.00 39.42 3.27
1974 2097 4.352893 AGGTAGGTTTACAGGTGGTTGATT 59.647 41.667 0.00 0.00 0.00 2.57
2105 2247 5.456548 TGGTACGTGACATACAAGAGAAA 57.543 39.130 0.00 0.00 0.00 2.52
2142 2284 8.197592 TCTCCCTTAATCACAACTACACTAAA 57.802 34.615 0.00 0.00 0.00 1.85
2155 2297 6.893958 ACTACACTAAATTGAGATTCTGCG 57.106 37.500 0.00 0.00 0.00 5.18
2255 2397 8.686334 CCTGACCTATAACTGTTTATTTGCAAT 58.314 33.333 0.00 0.00 0.00 3.56
2389 2532 7.371936 GGGTTGCACTTGTGTAATTTATGTTA 58.628 34.615 7.47 0.00 0.00 2.41
2474 2617 5.126222 TGCTTCTGTACTTGACCTAGAGATG 59.874 44.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.006391 CACGATGCGGTGTTATTCGTC 60.006 52.381 0.00 0.00 33.24 4.20
2 3 0.315059 GCACGATGCGGTGTTATTCG 60.315 55.000 0.00 0.00 40.08 3.34
3 4 3.509266 GCACGATGCGGTGTTATTC 57.491 52.632 0.00 0.00 40.08 1.75
13 14 1.906966 CAATTGAAACGAGCACGATGC 59.093 47.619 11.40 0.00 45.46 3.91
14 15 1.906966 GCAATTGAAACGAGCACGATG 59.093 47.619 11.40 0.00 42.66 3.84
15 16 1.806542 AGCAATTGAAACGAGCACGAT 59.193 42.857 11.40 0.00 42.66 3.73
16 17 1.225855 AGCAATTGAAACGAGCACGA 58.774 45.000 11.40 0.00 42.66 4.35
17 18 2.036556 AAGCAATTGAAACGAGCACG 57.963 45.000 10.34 0.76 45.75 5.34
20 21 8.678346 TGTTCCAATTAAGCAATTGAAACGAGC 61.678 37.037 10.34 0.00 46.60 5.03
21 22 6.640499 TGTTCCAATTAAGCAATTGAAACGAG 59.360 34.615 10.34 0.00 46.60 4.18
22 23 6.419413 GTGTTCCAATTAAGCAATTGAAACGA 59.581 34.615 10.34 0.00 46.60 3.85
23 24 6.346518 GGTGTTCCAATTAAGCAATTGAAACG 60.347 38.462 10.34 0.00 46.60 3.60
29 30 4.864704 ACGGTGTTCCAATTAAGCAATT 57.135 36.364 0.00 0.00 34.60 2.32
30 31 4.279671 TCAACGGTGTTCCAATTAAGCAAT 59.720 37.500 0.00 0.00 0.00 3.56
31 32 3.632604 TCAACGGTGTTCCAATTAAGCAA 59.367 39.130 0.00 0.00 0.00 3.91
32 33 3.003897 GTCAACGGTGTTCCAATTAAGCA 59.996 43.478 0.00 0.00 0.00 3.91
33 34 3.252458 AGTCAACGGTGTTCCAATTAAGC 59.748 43.478 0.00 0.00 0.00 3.09
34 35 5.929992 TCTAGTCAACGGTGTTCCAATTAAG 59.070 40.000 0.00 0.00 0.00 1.85
35 36 5.856156 TCTAGTCAACGGTGTTCCAATTAA 58.144 37.500 0.00 0.00 0.00 1.40
36 37 5.471556 TCTAGTCAACGGTGTTCCAATTA 57.528 39.130 0.00 0.00 0.00 1.40
37 38 4.315803 CTCTAGTCAACGGTGTTCCAATT 58.684 43.478 0.00 0.00 0.00 2.32
38 39 3.864921 GCTCTAGTCAACGGTGTTCCAAT 60.865 47.826 0.00 0.00 0.00 3.16
39 40 2.547218 GCTCTAGTCAACGGTGTTCCAA 60.547 50.000 0.00 0.00 0.00 3.53
40 41 1.000506 GCTCTAGTCAACGGTGTTCCA 59.999 52.381 0.00 0.00 0.00 3.53
41 42 1.000506 TGCTCTAGTCAACGGTGTTCC 59.999 52.381 0.00 0.00 0.00 3.62
42 43 2.433868 TGCTCTAGTCAACGGTGTTC 57.566 50.000 0.00 0.00 0.00 3.18
43 44 2.902705 TTGCTCTAGTCAACGGTGTT 57.097 45.000 0.00 0.00 0.00 3.32
44 45 2.870411 GTTTTGCTCTAGTCAACGGTGT 59.130 45.455 0.00 0.00 0.00 4.16
45 46 3.131396 AGTTTTGCTCTAGTCAACGGTG 58.869 45.455 0.00 0.00 0.00 4.94
46 47 3.470645 AGTTTTGCTCTAGTCAACGGT 57.529 42.857 0.00 0.00 0.00 4.83
47 48 5.168569 TCATAGTTTTGCTCTAGTCAACGG 58.831 41.667 0.00 0.00 0.00 4.44
48 49 6.706055 TTCATAGTTTTGCTCTAGTCAACG 57.294 37.500 0.00 0.00 0.00 4.10
49 50 9.334693 CATTTTCATAGTTTTGCTCTAGTCAAC 57.665 33.333 0.00 0.00 0.00 3.18
50 51 8.514594 CCATTTTCATAGTTTTGCTCTAGTCAA 58.485 33.333 0.00 0.00 0.00 3.18
51 52 7.362056 GCCATTTTCATAGTTTTGCTCTAGTCA 60.362 37.037 0.00 0.00 0.00 3.41
52 53 6.969473 GCCATTTTCATAGTTTTGCTCTAGTC 59.031 38.462 0.00 0.00 0.00 2.59
53 54 6.660949 AGCCATTTTCATAGTTTTGCTCTAGT 59.339 34.615 0.00 0.00 0.00 2.57
54 55 7.093322 AGCCATTTTCATAGTTTTGCTCTAG 57.907 36.000 0.00 0.00 0.00 2.43
55 56 8.458843 GTTAGCCATTTTCATAGTTTTGCTCTA 58.541 33.333 0.00 0.00 0.00 2.43
56 57 5.990120 AGCCATTTTCATAGTTTTGCTCT 57.010 34.783 0.00 0.00 0.00 4.09
57 58 6.531594 GGTTAGCCATTTTCATAGTTTTGCTC 59.468 38.462 0.00 0.00 34.09 4.26
58 59 6.014669 TGGTTAGCCATTTTCATAGTTTTGCT 60.015 34.615 0.00 0.00 40.46 3.91
59 60 6.162777 TGGTTAGCCATTTTCATAGTTTTGC 58.837 36.000 0.00 0.00 40.46 3.68
60 61 7.601856 TCTGGTTAGCCATTTTCATAGTTTTG 58.398 34.615 0.00 0.00 45.05 2.44
61 62 7.775053 TCTGGTTAGCCATTTTCATAGTTTT 57.225 32.000 0.00 0.00 45.05 2.43
62 63 7.631377 GCATCTGGTTAGCCATTTTCATAGTTT 60.631 37.037 0.00 0.00 45.05 2.66
63 64 6.183360 GCATCTGGTTAGCCATTTTCATAGTT 60.183 38.462 0.00 0.00 45.05 2.24
64 65 5.300286 GCATCTGGTTAGCCATTTTCATAGT 59.700 40.000 0.00 0.00 45.05 2.12
65 66 5.300034 TGCATCTGGTTAGCCATTTTCATAG 59.700 40.000 0.00 0.00 45.05 2.23
66 67 5.199723 TGCATCTGGTTAGCCATTTTCATA 58.800 37.500 0.00 0.00 45.05 2.15
67 68 4.025360 TGCATCTGGTTAGCCATTTTCAT 58.975 39.130 0.00 0.00 45.05 2.57
68 69 3.429492 TGCATCTGGTTAGCCATTTTCA 58.571 40.909 0.00 0.00 45.05 2.69
69 70 4.660789 ATGCATCTGGTTAGCCATTTTC 57.339 40.909 0.00 0.00 45.05 2.29
70 71 4.955450 TGTATGCATCTGGTTAGCCATTTT 59.045 37.500 0.19 0.00 45.05 1.82
71 72 4.535781 TGTATGCATCTGGTTAGCCATTT 58.464 39.130 0.19 0.00 45.05 2.32
72 73 4.169059 TGTATGCATCTGGTTAGCCATT 57.831 40.909 0.19 0.00 45.05 3.16
73 74 3.862877 TGTATGCATCTGGTTAGCCAT 57.137 42.857 0.19 0.00 45.05 4.40
74 75 3.862877 ATGTATGCATCTGGTTAGCCA 57.137 42.857 0.19 0.00 43.73 4.75
75 76 6.824305 AATTATGTATGCATCTGGTTAGCC 57.176 37.500 0.19 0.00 36.58 3.93
76 77 7.965107 GCTTAATTATGTATGCATCTGGTTAGC 59.035 37.037 0.19 0.83 36.58 3.09
77 78 9.002600 TGCTTAATTATGTATGCATCTGGTTAG 57.997 33.333 0.19 0.00 36.58 2.34
78 79 8.916628 TGCTTAATTATGTATGCATCTGGTTA 57.083 30.769 0.19 0.00 36.58 2.85
79 80 7.822161 TGCTTAATTATGTATGCATCTGGTT 57.178 32.000 0.19 0.00 36.58 3.67
80 81 9.170734 CTATGCTTAATTATGTATGCATCTGGT 57.829 33.333 0.19 0.00 41.43 4.00
81 82 8.618677 CCTATGCTTAATTATGTATGCATCTGG 58.381 37.037 0.19 8.67 41.43 3.86
82 83 9.387257 TCCTATGCTTAATTATGTATGCATCTG 57.613 33.333 0.19 4.81 41.43 2.90
86 87 9.613428 GGTATCCTATGCTTAATTATGTATGCA 57.387 33.333 10.84 0.00 38.19 3.96
87 88 8.765219 CGGTATCCTATGCTTAATTATGTATGC 58.235 37.037 10.84 1.69 0.00 3.14
88 89 9.261180 CCGGTATCCTATGCTTAATTATGTATG 57.739 37.037 10.84 3.48 0.00 2.39
89 90 7.931948 GCCGGTATCCTATGCTTAATTATGTAT 59.068 37.037 1.90 7.05 0.00 2.29
90 91 7.270047 GCCGGTATCCTATGCTTAATTATGTA 58.730 38.462 1.90 0.00 0.00 2.29
91 92 6.113411 GCCGGTATCCTATGCTTAATTATGT 58.887 40.000 1.90 0.00 0.00 2.29
92 93 5.527582 GGCCGGTATCCTATGCTTAATTATG 59.472 44.000 1.90 0.00 0.00 1.90
93 94 5.428783 AGGCCGGTATCCTATGCTTAATTAT 59.571 40.000 1.90 0.00 30.79 1.28
94 95 4.781087 AGGCCGGTATCCTATGCTTAATTA 59.219 41.667 1.90 0.00 30.79 1.40
95 96 3.587506 AGGCCGGTATCCTATGCTTAATT 59.412 43.478 1.90 0.00 30.79 1.40
96 97 3.182152 AGGCCGGTATCCTATGCTTAAT 58.818 45.455 1.90 0.00 30.79 1.40
97 98 2.616524 AGGCCGGTATCCTATGCTTAA 58.383 47.619 1.90 0.00 30.79 1.85
98 99 2.320681 AGGCCGGTATCCTATGCTTA 57.679 50.000 1.90 0.00 30.79 3.09
99 100 1.348036 GAAGGCCGGTATCCTATGCTT 59.652 52.381 1.90 0.00 32.65 3.91
100 101 0.977395 GAAGGCCGGTATCCTATGCT 59.023 55.000 1.90 0.00 32.65 3.79
101 102 0.036294 GGAAGGCCGGTATCCTATGC 60.036 60.000 1.90 0.00 32.65 3.14
102 103 1.550976 GAGGAAGGCCGGTATCCTATG 59.449 57.143 20.31 0.00 43.55 2.23
103 104 1.433592 AGAGGAAGGCCGGTATCCTAT 59.566 52.381 20.31 16.18 43.55 2.57
104 105 0.858369 AGAGGAAGGCCGGTATCCTA 59.142 55.000 20.31 0.00 43.55 2.94
105 106 0.858369 TAGAGGAAGGCCGGTATCCT 59.142 55.000 20.38 20.38 46.14 3.24
106 107 1.713297 TTAGAGGAAGGCCGGTATCC 58.287 55.000 1.90 8.82 39.96 2.59
107 108 3.832615 TTTTAGAGGAAGGCCGGTATC 57.167 47.619 1.90 0.00 39.96 2.24
108 109 4.412528 AGATTTTTAGAGGAAGGCCGGTAT 59.587 41.667 1.90 0.00 39.96 2.73
109 110 3.778629 AGATTTTTAGAGGAAGGCCGGTA 59.221 43.478 1.90 0.00 39.96 4.02
110 111 2.576648 AGATTTTTAGAGGAAGGCCGGT 59.423 45.455 1.90 0.00 39.96 5.28
111 112 3.283259 AGATTTTTAGAGGAAGGCCGG 57.717 47.619 0.00 0.00 39.96 6.13
112 113 3.378427 CCAAGATTTTTAGAGGAAGGCCG 59.622 47.826 0.00 0.00 39.96 6.13
113 114 4.344978 ACCAAGATTTTTAGAGGAAGGCC 58.655 43.478 0.00 0.00 0.00 5.19
114 115 7.462571 TTTACCAAGATTTTTAGAGGAAGGC 57.537 36.000 0.00 0.00 0.00 4.35
115 116 8.523658 CCTTTTACCAAGATTTTTAGAGGAAGG 58.476 37.037 0.00 0.00 0.00 3.46
116 117 8.523658 CCCTTTTACCAAGATTTTTAGAGGAAG 58.476 37.037 0.00 0.00 0.00 3.46
117 118 8.228905 TCCCTTTTACCAAGATTTTTAGAGGAA 58.771 33.333 0.00 0.00 0.00 3.36
118 119 7.761608 TCCCTTTTACCAAGATTTTTAGAGGA 58.238 34.615 0.00 0.00 0.00 3.71
119 120 7.363007 GCTCCCTTTTACCAAGATTTTTAGAGG 60.363 40.741 0.00 0.00 0.00 3.69
120 121 7.176690 TGCTCCCTTTTACCAAGATTTTTAGAG 59.823 37.037 0.00 0.00 0.00 2.43
121 122 7.007723 TGCTCCCTTTTACCAAGATTTTTAGA 58.992 34.615 0.00 0.00 0.00 2.10
122 123 7.227049 TGCTCCCTTTTACCAAGATTTTTAG 57.773 36.000 0.00 0.00 0.00 1.85
123 124 6.295067 GCTGCTCCCTTTTACCAAGATTTTTA 60.295 38.462 0.00 0.00 0.00 1.52
124 125 5.511373 GCTGCTCCCTTTTACCAAGATTTTT 60.511 40.000 0.00 0.00 0.00 1.94
125 126 4.021104 GCTGCTCCCTTTTACCAAGATTTT 60.021 41.667 0.00 0.00 0.00 1.82
126 127 3.511540 GCTGCTCCCTTTTACCAAGATTT 59.488 43.478 0.00 0.00 0.00 2.17
127 128 3.092301 GCTGCTCCCTTTTACCAAGATT 58.908 45.455 0.00 0.00 0.00 2.40
128 129 2.041620 TGCTGCTCCCTTTTACCAAGAT 59.958 45.455 0.00 0.00 0.00 2.40
129 130 1.423541 TGCTGCTCCCTTTTACCAAGA 59.576 47.619 0.00 0.00 0.00 3.02
130 131 1.909700 TGCTGCTCCCTTTTACCAAG 58.090 50.000 0.00 0.00 0.00 3.61
131 132 1.960689 GTTGCTGCTCCCTTTTACCAA 59.039 47.619 0.00 0.00 0.00 3.67
132 133 1.133637 TGTTGCTGCTCCCTTTTACCA 60.134 47.619 0.00 0.00 0.00 3.25
133 134 1.269723 GTGTTGCTGCTCCCTTTTACC 59.730 52.381 0.00 0.00 0.00 2.85
134 135 1.269723 GGTGTTGCTGCTCCCTTTTAC 59.730 52.381 0.00 0.00 0.00 2.01
135 136 1.133637 TGGTGTTGCTGCTCCCTTTTA 60.134 47.619 0.00 0.00 0.00 1.52
136 137 0.396974 TGGTGTTGCTGCTCCCTTTT 60.397 50.000 0.00 0.00 0.00 2.27
137 138 0.396974 TTGGTGTTGCTGCTCCCTTT 60.397 50.000 0.00 0.00 0.00 3.11
138 139 1.109323 GTTGGTGTTGCTGCTCCCTT 61.109 55.000 0.00 0.00 0.00 3.95
139 140 1.529244 GTTGGTGTTGCTGCTCCCT 60.529 57.895 0.00 0.00 0.00 4.20
140 141 0.250727 TAGTTGGTGTTGCTGCTCCC 60.251 55.000 0.00 0.00 0.00 4.30
141 142 1.266989 GTTAGTTGGTGTTGCTGCTCC 59.733 52.381 0.00 0.00 0.00 4.70
142 143 2.222027 AGTTAGTTGGTGTTGCTGCTC 58.778 47.619 0.00 0.00 0.00 4.26
143 144 2.348411 AGTTAGTTGGTGTTGCTGCT 57.652 45.000 0.00 0.00 0.00 4.24
144 145 2.484264 CCTAGTTAGTTGGTGTTGCTGC 59.516 50.000 0.00 0.00 0.00 5.25
145 146 3.498397 CACCTAGTTAGTTGGTGTTGCTG 59.502 47.826 11.56 0.00 44.35 4.41
146 147 3.740115 CACCTAGTTAGTTGGTGTTGCT 58.260 45.455 11.56 0.00 44.35 3.91
152 153 7.543359 TGTTATGTACACCTAGTTAGTTGGT 57.457 36.000 0.00 0.00 33.87 3.67
153 154 8.092687 ACTTGTTATGTACACCTAGTTAGTTGG 58.907 37.037 0.00 0.00 36.21 3.77
154 155 8.922676 CACTTGTTATGTACACCTAGTTAGTTG 58.077 37.037 0.00 0.00 36.21 3.16
155 156 8.645110 ACACTTGTTATGTACACCTAGTTAGTT 58.355 33.333 0.00 0.00 36.21 2.24
156 157 8.186709 ACACTTGTTATGTACACCTAGTTAGT 57.813 34.615 0.00 0.00 36.21 2.24
157 158 8.301720 TGACACTTGTTATGTACACCTAGTTAG 58.698 37.037 0.00 0.00 36.21 2.34
158 159 8.180706 TGACACTTGTTATGTACACCTAGTTA 57.819 34.615 0.00 0.00 36.21 2.24
159 160 7.058023 TGACACTTGTTATGTACACCTAGTT 57.942 36.000 0.00 0.00 36.21 2.24
160 161 6.267014 ACTGACACTTGTTATGTACACCTAGT 59.733 38.462 0.00 0.00 36.21 2.57
161 162 6.688578 ACTGACACTTGTTATGTACACCTAG 58.311 40.000 0.00 0.00 36.21 3.02
162 163 6.265876 TGACTGACACTTGTTATGTACACCTA 59.734 38.462 0.00 0.00 36.21 3.08
163 164 5.069914 TGACTGACACTTGTTATGTACACCT 59.930 40.000 0.00 0.00 36.21 4.00
164 165 5.294356 TGACTGACACTTGTTATGTACACC 58.706 41.667 0.00 0.00 36.21 4.16
165 166 5.107453 GCTGACTGACACTTGTTATGTACAC 60.107 44.000 0.00 0.00 36.21 2.90
166 167 4.988540 GCTGACTGACACTTGTTATGTACA 59.011 41.667 0.00 0.00 34.12 2.90
167 168 5.230942 AGCTGACTGACACTTGTTATGTAC 58.769 41.667 0.00 0.00 0.00 2.90
168 169 5.468540 AGCTGACTGACACTTGTTATGTA 57.531 39.130 0.00 0.00 0.00 2.29
169 170 4.342862 AGCTGACTGACACTTGTTATGT 57.657 40.909 0.00 0.00 0.00 2.29
170 171 6.101997 TCATAGCTGACTGACACTTGTTATG 58.898 40.000 0.00 0.00 0.00 1.90
171 172 6.286240 TCATAGCTGACTGACACTTGTTAT 57.714 37.500 0.00 0.00 0.00 1.89
172 173 5.722021 TCATAGCTGACTGACACTTGTTA 57.278 39.130 0.00 0.00 0.00 2.41
173 174 4.607293 TCATAGCTGACTGACACTTGTT 57.393 40.909 0.00 0.00 0.00 2.83
174 175 4.562347 CCTTCATAGCTGACTGACACTTGT 60.562 45.833 0.00 0.00 0.00 3.16
175 176 3.931468 CCTTCATAGCTGACTGACACTTG 59.069 47.826 0.00 0.00 0.00 3.16
176 177 3.834813 TCCTTCATAGCTGACTGACACTT 59.165 43.478 0.00 0.00 0.00 3.16
177 178 3.435275 TCCTTCATAGCTGACTGACACT 58.565 45.455 0.00 0.00 0.00 3.55
178 179 3.876274 TCCTTCATAGCTGACTGACAC 57.124 47.619 0.00 0.00 0.00 3.67
179 180 3.133542 CCATCCTTCATAGCTGACTGACA 59.866 47.826 0.00 0.00 0.00 3.58
180 181 3.726607 CCATCCTTCATAGCTGACTGAC 58.273 50.000 0.00 0.00 0.00 3.51
181 182 2.103771 GCCATCCTTCATAGCTGACTGA 59.896 50.000 0.00 0.00 0.00 3.41
182 183 2.104451 AGCCATCCTTCATAGCTGACTG 59.896 50.000 0.00 0.00 26.70 3.51
183 184 2.406559 AGCCATCCTTCATAGCTGACT 58.593 47.619 0.00 0.00 26.70 3.41
184 185 2.926778 AGCCATCCTTCATAGCTGAC 57.073 50.000 0.00 0.00 26.70 3.51
185 186 3.939740 AAAGCCATCCTTCATAGCTGA 57.060 42.857 0.00 0.00 28.65 4.26
186 187 5.311265 TGATAAAGCCATCCTTCATAGCTG 58.689 41.667 0.00 0.00 28.65 4.24
187 188 5.573380 TGATAAAGCCATCCTTCATAGCT 57.427 39.130 0.00 0.00 29.37 3.32
240 241 5.542779 AGGCGGAGTTCATTAGATTATCAC 58.457 41.667 0.00 0.00 0.00 3.06
259 261 6.604735 ACTCAAGCAATAAATAAGTAGGCG 57.395 37.500 0.00 0.00 0.00 5.52
272 274 4.155462 CACTGCAACATCTACTCAAGCAAT 59.845 41.667 0.00 0.00 0.00 3.56
278 280 2.837532 TGCACTGCAACATCTACTCA 57.162 45.000 0.00 0.00 34.76 3.41
289 291 5.009631 AGTTCTTATATTGGTTGCACTGCA 58.990 37.500 0.00 0.00 36.47 4.41
290 292 5.567138 AGTTCTTATATTGGTTGCACTGC 57.433 39.130 0.00 0.00 0.00 4.40
291 293 7.144722 TGAAGTTCTTATATTGGTTGCACTG 57.855 36.000 4.17 0.00 0.00 3.66
299 301 7.012327 TCGCCTCAAATGAAGTTCTTATATTGG 59.988 37.037 4.17 0.52 0.00 3.16
323 325 7.997107 TTGTATTGCACTAGTTAATACCTCG 57.003 36.000 23.83 3.08 36.78 4.63
330 332 8.154856 ACTCCTTCTTTGTATTGCACTAGTTAA 58.845 33.333 0.00 0.00 0.00 2.01
333 339 6.115448 ACTCCTTCTTTGTATTGCACTAGT 57.885 37.500 0.00 0.00 0.00 2.57
373 385 8.110860 AGCAACAAGTGTTTAGTATAATTGCT 57.889 30.769 0.00 0.00 43.01 3.91
392 404 3.037833 CGCGCAGTGAGAGCAACA 61.038 61.111 8.75 0.00 43.95 3.33
422 436 2.079925 GGGTGAAATCTGACTGACTGC 58.920 52.381 0.00 0.00 0.00 4.40
423 437 2.341257 CGGGTGAAATCTGACTGACTG 58.659 52.381 0.00 0.00 0.00 3.51
441 455 0.392193 AGATGAGTTTGCAGCTCCGG 60.392 55.000 14.98 0.00 25.75 5.14
564 585 3.997681 GACTTCTTAGGAGTTGACAAGCC 59.002 47.826 0.00 0.00 0.00 4.35
617 646 0.741915 TGTTCGTTTGGACTTTGGGC 59.258 50.000 0.00 0.00 0.00 5.36
721 751 5.410355 AGCATGCTATTGTTTTCATTGGT 57.590 34.783 21.21 0.00 0.00 3.67
722 752 6.331845 TGTAGCATGCTATTGTTTTCATTGG 58.668 36.000 29.17 0.00 0.00 3.16
723 753 7.328982 TGTTGTAGCATGCTATTGTTTTCATTG 59.671 33.333 29.17 0.00 0.00 2.82
724 754 7.377398 TGTTGTAGCATGCTATTGTTTTCATT 58.623 30.769 29.17 1.39 0.00 2.57
725 755 6.923012 TGTTGTAGCATGCTATTGTTTTCAT 58.077 32.000 29.17 1.61 0.00 2.57
727 757 7.636259 TTTGTTGTAGCATGCTATTGTTTTC 57.364 32.000 29.17 15.28 0.00 2.29
734 764 5.751680 CGCTATTTTGTTGTAGCATGCTAT 58.248 37.500 29.17 14.76 42.62 2.97
736 766 3.731867 GCGCTATTTTGTTGTAGCATGCT 60.732 43.478 25.99 25.99 42.62 3.79
737 767 2.531508 GCGCTATTTTGTTGTAGCATGC 59.468 45.455 10.51 10.51 42.62 4.06
738 768 2.777845 CGCGCTATTTTGTTGTAGCATG 59.222 45.455 5.56 0.00 42.62 4.06
739 769 2.223249 CCGCGCTATTTTGTTGTAGCAT 60.223 45.455 5.56 0.00 42.62 3.79
741 771 1.395608 TCCGCGCTATTTTGTTGTAGC 59.604 47.619 5.56 0.00 39.86 3.58
742 772 2.222953 GGTCCGCGCTATTTTGTTGTAG 60.223 50.000 5.56 0.00 0.00 2.74
743 773 1.733360 GGTCCGCGCTATTTTGTTGTA 59.267 47.619 5.56 0.00 0.00 2.41
744 774 0.519961 GGTCCGCGCTATTTTGTTGT 59.480 50.000 5.56 0.00 0.00 3.32
745 775 0.802494 AGGTCCGCGCTATTTTGTTG 59.198 50.000 5.56 0.00 0.00 3.33
748 778 3.750639 TTTAAGGTCCGCGCTATTTTG 57.249 42.857 5.56 0.00 0.00 2.44
753 783 2.803956 GCATATTTTAAGGTCCGCGCTA 59.196 45.455 5.56 0.00 0.00 4.26
754 784 1.602377 GCATATTTTAAGGTCCGCGCT 59.398 47.619 5.56 0.00 0.00 5.92
755 785 1.602377 AGCATATTTTAAGGTCCGCGC 59.398 47.619 0.00 0.00 0.00 6.86
756 786 5.607119 AATAGCATATTTTAAGGTCCGCG 57.393 39.130 0.00 0.00 0.00 6.46
757 787 6.543736 GCTAATAGCATATTTTAAGGTCCGC 58.456 40.000 7.49 0.00 41.89 5.54
773 803 4.504461 AGCGCGATATAACATGCTAATAGC 59.496 41.667 12.10 5.12 42.82 2.97
774 804 7.859613 ATAGCGCGATATAACATGCTAATAG 57.140 36.000 16.40 0.00 38.30 1.73
775 805 7.537649 GCTATAGCGCGATATAACATGCTAATA 59.462 37.037 22.87 0.65 38.30 0.98
776 806 6.363626 GCTATAGCGCGATATAACATGCTAAT 59.636 38.462 22.87 0.00 38.30 1.73
777 807 5.685954 GCTATAGCGCGATATAACATGCTAA 59.314 40.000 22.87 1.86 38.30 3.09
778 808 5.212934 GCTATAGCGCGATATAACATGCTA 58.787 41.667 22.87 5.41 39.05 3.49
779 809 4.045104 GCTATAGCGCGATATAACATGCT 58.955 43.478 22.87 3.23 36.51 3.79
780 810 4.361926 GCTATAGCGCGATATAACATGC 57.638 45.455 22.87 18.51 0.00 4.06
794 824 4.965158 GTCTCGCTAATATCACGCTATAGC 59.035 45.833 15.09 15.09 37.78 2.97
795 825 5.191777 CGTCTCGCTAATATCACGCTATAG 58.808 45.833 0.00 0.00 0.00 1.31
796 826 4.628766 ACGTCTCGCTAATATCACGCTATA 59.371 41.667 0.00 0.00 0.00 1.31
797 827 3.436015 ACGTCTCGCTAATATCACGCTAT 59.564 43.478 0.00 0.00 0.00 2.97
798 828 2.804527 ACGTCTCGCTAATATCACGCTA 59.195 45.455 0.00 0.00 0.00 4.26
799 829 1.602851 ACGTCTCGCTAATATCACGCT 59.397 47.619 0.00 0.00 0.00 5.07
800 830 2.033793 ACGTCTCGCTAATATCACGC 57.966 50.000 0.00 0.00 0.00 5.34
801 831 6.301861 TGTATAACGTCTCGCTAATATCACG 58.698 40.000 0.00 0.00 0.00 4.35
802 832 8.670804 ATTGTATAACGTCTCGCTAATATCAC 57.329 34.615 0.00 0.00 0.00 3.06
832 862 8.786898 GCATATTGAGAATGACCTTGCTAAATA 58.213 33.333 0.00 0.00 0.00 1.40
833 863 7.504911 AGCATATTGAGAATGACCTTGCTAAAT 59.495 33.333 0.00 0.00 36.25 1.40
834 864 6.830324 AGCATATTGAGAATGACCTTGCTAAA 59.170 34.615 0.00 0.00 36.25 1.85
835 865 6.359804 AGCATATTGAGAATGACCTTGCTAA 58.640 36.000 0.00 0.00 36.25 3.09
836 866 5.933617 AGCATATTGAGAATGACCTTGCTA 58.066 37.500 0.00 0.00 36.25 3.49
837 867 4.789807 AGCATATTGAGAATGACCTTGCT 58.210 39.130 0.00 0.00 33.37 3.91
838 868 6.814506 ATAGCATATTGAGAATGACCTTGC 57.185 37.500 0.00 0.00 0.00 4.01
839 869 8.449397 GCTAATAGCATATTGAGAATGACCTTG 58.551 37.037 7.49 0.00 41.89 3.61
840 870 7.332926 CGCTAATAGCATATTGAGAATGACCTT 59.667 37.037 13.15 0.00 42.58 3.50
841 871 6.815641 CGCTAATAGCATATTGAGAATGACCT 59.184 38.462 13.15 0.00 42.58 3.85
842 872 6.813649 TCGCTAATAGCATATTGAGAATGACC 59.186 38.462 13.15 0.00 42.58 4.02
843 873 7.462069 CGTCGCTAATAGCATATTGAGAATGAC 60.462 40.741 13.15 5.89 42.58 3.06
844 874 6.528072 CGTCGCTAATAGCATATTGAGAATGA 59.472 38.462 13.15 0.00 42.58 2.57
845 875 6.690494 CGTCGCTAATAGCATATTGAGAATG 58.310 40.000 13.15 0.00 42.58 2.67
846 876 5.289675 GCGTCGCTAATAGCATATTGAGAAT 59.710 40.000 10.68 0.00 42.58 2.40
847 877 4.621460 GCGTCGCTAATAGCATATTGAGAA 59.379 41.667 10.68 0.00 42.58 2.87
848 878 4.082733 AGCGTCGCTAATAGCATATTGAGA 60.083 41.667 20.25 0.00 42.58 3.27
849 879 4.169508 AGCGTCGCTAATAGCATATTGAG 58.830 43.478 20.25 0.00 42.58 3.02
850 880 4.174411 AGCGTCGCTAATAGCATATTGA 57.826 40.909 20.25 0.00 42.58 2.57
851 881 6.129326 GCTATAGCGTCGCTAATAGCATATTG 60.129 42.308 34.13 21.30 44.62 1.90
852 882 5.915758 GCTATAGCGTCGCTAATAGCATATT 59.084 40.000 34.13 21.04 44.62 1.28
853 883 5.453648 GCTATAGCGTCGCTAATAGCATAT 58.546 41.667 34.13 22.23 44.62 1.78
854 884 4.845387 GCTATAGCGTCGCTAATAGCATA 58.155 43.478 34.13 23.13 44.62 3.14
855 885 3.696898 GCTATAGCGTCGCTAATAGCAT 58.303 45.455 34.13 23.22 44.62 3.79
856 886 3.132629 GCTATAGCGTCGCTAATAGCA 57.867 47.619 34.13 19.54 44.62 3.49
869 899 3.428870 TGAAAAGAATAGCGCGCTATAGC 59.571 43.478 43.81 36.59 38.20 2.97
870 900 5.576337 TTGAAAAGAATAGCGCGCTATAG 57.424 39.130 43.81 1.26 38.20 1.31
871 901 5.694458 TCATTGAAAAGAATAGCGCGCTATA 59.306 36.000 43.81 29.78 38.20 1.31
872 902 4.511454 TCATTGAAAAGAATAGCGCGCTAT 59.489 37.500 40.32 40.32 40.63 2.97
873 903 3.868661 TCATTGAAAAGAATAGCGCGCTA 59.131 39.130 39.72 39.72 0.00 4.26
874 904 2.677836 TCATTGAAAAGAATAGCGCGCT 59.322 40.909 38.01 38.01 0.00 5.92
875 905 2.778386 GTCATTGAAAAGAATAGCGCGC 59.222 45.455 26.66 26.66 0.00 6.86
876 906 4.264543 AGTCATTGAAAAGAATAGCGCG 57.735 40.909 0.00 0.00 0.00 6.86
877 907 8.335356 TGTTATAGTCATTGAAAAGAATAGCGC 58.665 33.333 0.00 0.00 0.00 5.92
878 908 9.638300 GTGTTATAGTCATTGAAAAGAATAGCG 57.362 33.333 0.00 0.00 0.00 4.26
946 977 0.466922 GGCCTCATTCACTCATGGGG 60.467 60.000 0.00 0.00 46.63 4.96
948 979 0.178767 TCGGCCTCATTCACTCATGG 59.821 55.000 0.00 0.00 0.00 3.66
957 1008 4.282703 ACGTATTTATAGGTCGGCCTCATT 59.717 41.667 14.54 0.61 45.64 2.57
997 1055 0.042448 GCTCTTCGCGTTTCGTTGTT 60.042 50.000 5.77 0.00 39.67 2.83
1004 1062 1.668151 GGTGGAGCTCTTCGCGTTT 60.668 57.895 14.64 0.00 45.59 3.60
1023 1081 2.606725 CAGCCTCTTCATTGTCGTGATC 59.393 50.000 0.00 0.00 0.00 2.92
1060 1127 4.489771 GGCACCATCCACCTCCGG 62.490 72.222 0.00 0.00 0.00 5.14
1074 1141 3.480679 CTCATGGGCTATGGCGGCA 62.481 63.158 16.34 16.34 39.81 5.69
1486 1562 0.823460 GCCCAGAGAGAGAGTTCCAG 59.177 60.000 0.00 0.00 0.00 3.86
1491 1567 0.324275 GTCAGGCCCAGAGAGAGAGT 60.324 60.000 0.00 0.00 0.00 3.24
1542 1618 0.539901 TAGGAGGGGAGCTATCGCAC 60.540 60.000 0.00 0.00 40.07 5.34
1546 1622 3.075432 AGAAGAGTAGGAGGGGAGCTATC 59.925 52.174 0.00 0.00 0.00 2.08
1613 1727 8.155510 TGGAAATCCAAATCAATCAATTGACAA 58.844 29.630 11.07 0.00 45.21 3.18
1656 1772 6.287525 TCCTTTCAATTCACAAACCCAAATC 58.712 36.000 0.00 0.00 0.00 2.17
1717 1833 5.555966 TGTTGTACATACTCAGGCAATCAA 58.444 37.500 0.00 0.00 0.00 2.57
1798 1914 4.019174 AGGAATCCATTCGCACAAGAATT 58.981 39.130 0.61 0.00 38.66 2.17
1828 1944 4.241681 GTTTTGCAAAGAGTGGTCAACAA 58.758 39.130 12.41 0.00 0.00 2.83
1855 1971 5.886715 TTCACATTGCGAACAATTCTTTG 57.113 34.783 0.00 0.00 44.21 2.77
1887 2006 6.427441 TCTCATGTGTATAGGAGTTGAGACT 58.573 40.000 0.00 0.00 39.32 3.24
1911 2030 9.249457 CGATCTAATCAATATATACATTGCGGT 57.751 33.333 0.00 0.00 36.13 5.68
1974 2097 2.074576 CTCTCTCTGGACGTTCGTACA 58.925 52.381 9.88 9.88 0.00 2.90
2105 2247 6.434340 GTGATTAAGGGAGAGTGTTGGAAATT 59.566 38.462 0.00 0.00 0.00 1.82
2142 2284 6.116680 GAAGAATTCACGCAGAATCTCAAT 57.883 37.500 8.44 0.00 46.09 2.57
2255 2397 8.915057 AGATTTTCACTTCTTCAGAGAATGAA 57.085 30.769 8.54 8.54 45.79 2.57
2389 2532 2.225091 TGGCTCCAGTCCATGTTGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
2474 2617 3.745975 GGTTTGCAAAGAAATAGGCAACC 59.254 43.478 13.26 2.19 44.99 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.