Multiple sequence alignment - TraesCS5A01G475900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G475900 | chr5A | 100.000 | 3599 | 0 | 0 | 1 | 3599 | 650670032 | 650673630 | 0.000000e+00 | 6647.0 |
1 | TraesCS5A01G475900 | chr5D | 88.833 | 3161 | 214 | 64 | 48 | 3135 | 524480101 | 524483195 | 0.000000e+00 | 3753.0 |
2 | TraesCS5A01G475900 | chr5D | 91.500 | 200 | 13 | 3 | 3203 | 3401 | 524483303 | 524483499 | 4.580000e-69 | 272.0 |
3 | TraesCS5A01G475900 | chr5D | 97.222 | 36 | 1 | 0 | 3417 | 3452 | 524483539 | 524483574 | 1.080000e-05 | 62.1 |
4 | TraesCS5A01G475900 | chr5B | 89.974 | 2743 | 186 | 50 | 1 | 2726 | 659028229 | 659030899 | 0.000000e+00 | 3459.0 |
5 | TraesCS5A01G475900 | chr5B | 83.920 | 199 | 12 | 10 | 3203 | 3399 | 659031426 | 659031606 | 4.780000e-39 | 172.0 |
6 | TraesCS5A01G475900 | chr5B | 97.222 | 36 | 1 | 0 | 3417 | 3452 | 659031655 | 659031690 | 1.080000e-05 | 62.1 |
7 | TraesCS5A01G475900 | chr2B | 87.546 | 1638 | 183 | 11 | 981 | 2605 | 635704931 | 635703302 | 0.000000e+00 | 1875.0 |
8 | TraesCS5A01G475900 | chr2B | 87.097 | 93 | 7 | 2 | 3455 | 3547 | 230293602 | 230293515 | 2.290000e-17 | 100.0 |
9 | TraesCS5A01G475900 | chr2A | 87.333 | 1642 | 187 | 11 | 981 | 2609 | 678018400 | 678016767 | 0.000000e+00 | 1860.0 |
10 | TraesCS5A01G475900 | chr2A | 85.294 | 102 | 6 | 6 | 3445 | 3546 | 428902065 | 428902157 | 2.960000e-16 | 97.1 |
11 | TraesCS5A01G475900 | chr2D | 88.287 | 1366 | 142 | 11 | 1252 | 2605 | 534492443 | 534491084 | 0.000000e+00 | 1620.0 |
12 | TraesCS5A01G475900 | chr1D | 76.667 | 270 | 33 | 17 | 1305 | 1566 | 452336674 | 452336427 | 4.880000e-24 | 122.0 |
13 | TraesCS5A01G475900 | chr1D | 76.779 | 267 | 32 | 17 | 1305 | 1563 | 452351679 | 452351923 | 4.880000e-24 | 122.0 |
14 | TraesCS5A01G475900 | chr1A | 87.629 | 97 | 7 | 2 | 3453 | 3549 | 307866759 | 307866668 | 1.370000e-19 | 108.0 |
15 | TraesCS5A01G475900 | chr1A | 85.714 | 98 | 8 | 3 | 3454 | 3551 | 560378112 | 560378203 | 8.220000e-17 | 99.0 |
16 | TraesCS5A01G475900 | chr6A | 85.000 | 100 | 12 | 3 | 1470 | 1566 | 261507852 | 261507951 | 8.220000e-17 | 99.0 |
17 | TraesCS5A01G475900 | chr7D | 85.000 | 100 | 9 | 4 | 3446 | 3545 | 178614043 | 178613950 | 2.960000e-16 | 97.1 |
18 | TraesCS5A01G475900 | chr4B | 86.170 | 94 | 8 | 2 | 3454 | 3547 | 538676150 | 538676062 | 2.960000e-16 | 97.1 |
19 | TraesCS5A01G475900 | chr6B | 85.567 | 97 | 4 | 5 | 3449 | 3545 | 532238255 | 532238341 | 3.830000e-15 | 93.5 |
20 | TraesCS5A01G475900 | chr1B | 85.870 | 92 | 8 | 3 | 3455 | 3546 | 4339070 | 4339156 | 3.830000e-15 | 93.5 |
21 | TraesCS5A01G475900 | chr1B | 82.051 | 117 | 13 | 5 | 3432 | 3546 | 513248525 | 513248415 | 3.830000e-15 | 93.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G475900 | chr5A | 650670032 | 650673630 | 3598 | False | 6647.000000 | 6647 | 100.000000 | 1 | 3599 | 1 | chr5A.!!$F1 | 3598 |
1 | TraesCS5A01G475900 | chr5D | 524480101 | 524483574 | 3473 | False | 1362.366667 | 3753 | 92.518333 | 48 | 3452 | 3 | chr5D.!!$F1 | 3404 |
2 | TraesCS5A01G475900 | chr5B | 659028229 | 659031690 | 3461 | False | 1231.033333 | 3459 | 90.372000 | 1 | 3452 | 3 | chr5B.!!$F1 | 3451 |
3 | TraesCS5A01G475900 | chr2B | 635703302 | 635704931 | 1629 | True | 1875.000000 | 1875 | 87.546000 | 981 | 2605 | 1 | chr2B.!!$R2 | 1624 |
4 | TraesCS5A01G475900 | chr2A | 678016767 | 678018400 | 1633 | True | 1860.000000 | 1860 | 87.333000 | 981 | 2609 | 1 | chr2A.!!$R1 | 1628 |
5 | TraesCS5A01G475900 | chr2D | 534491084 | 534492443 | 1359 | True | 1620.000000 | 1620 | 88.287000 | 1252 | 2605 | 1 | chr2D.!!$R1 | 1353 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
227 | 228 | 0.037697 | TGGGTCCGATCTTTCACACG | 60.038 | 55.0 | 0.0 | 0.0 | 0.0 | 4.49 | F |
1155 | 1177 | 0.395036 | TCTCTTCCTCCCTCTCGCAG | 60.395 | 60.0 | 0.0 | 0.0 | 0.0 | 5.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1573 | 1601 | 0.402121 | GACTCCTTGGCCAAGAACCT | 59.598 | 55.0 | 41.1 | 22.49 | 40.79 | 3.50 | R |
2774 | 2817 | 0.032952 | GGGTTCACGCACACTGACTA | 59.967 | 55.0 | 0.0 | 0.00 | 0.00 | 2.59 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 5.728637 | CAGGAAGTTTTCTTAAAGCCCAT | 57.271 | 39.130 | 0.00 | 0.00 | 40.61 | 4.00 |
29 | 30 | 2.717639 | TCTTAAAGCCCATCTCTGCC | 57.282 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
32 | 33 | 0.107017 | TAAAGCCCATCTCTGCCAGC | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
41 | 42 | 1.769026 | TCTCTGCCAGCGAGTATTCT | 58.231 | 50.000 | 9.98 | 0.00 | 0.00 | 2.40 |
42 | 43 | 1.406898 | TCTCTGCCAGCGAGTATTCTG | 59.593 | 52.381 | 9.98 | 0.00 | 0.00 | 3.02 |
66 | 67 | 3.330701 | AGCAACTCTCCCAATTAAGACCA | 59.669 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
85 | 86 | 3.259123 | ACCAAATGATTCACTTGCCCTTC | 59.741 | 43.478 | 2.35 | 0.00 | 0.00 | 3.46 |
103 | 104 | 3.438087 | CCTTCGCCATGGACATTATCATC | 59.562 | 47.826 | 18.40 | 0.00 | 0.00 | 2.92 |
134 | 135 | 1.356624 | GCCATTTGGAATCCTCGCG | 59.643 | 57.895 | 0.00 | 0.00 | 37.39 | 5.87 |
137 | 138 | 1.064060 | CCATTTGGAATCCTCGCGAAC | 59.936 | 52.381 | 11.33 | 0.00 | 37.39 | 3.95 |
147 | 148 | 1.135373 | TCCTCGCGAACAGTTCATCTC | 60.135 | 52.381 | 11.33 | 0.00 | 0.00 | 2.75 |
150 | 151 | 1.000394 | TCGCGAACAGTTCATCTCCAA | 60.000 | 47.619 | 6.20 | 0.00 | 0.00 | 3.53 |
152 | 153 | 2.159787 | CGCGAACAGTTCATCTCCAAAG | 60.160 | 50.000 | 13.82 | 0.00 | 0.00 | 2.77 |
178 | 179 | 1.520600 | CGCCCAACCTGGTTTACACC | 61.521 | 60.000 | 9.90 | 0.00 | 44.56 | 4.16 |
218 | 219 | 1.757118 | TCTGTCAGAATGGGTCCGATC | 59.243 | 52.381 | 0.00 | 0.00 | 36.16 | 3.69 |
224 | 225 | 2.939103 | CAGAATGGGTCCGATCTTTCAC | 59.061 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
227 | 228 | 0.037697 | TGGGTCCGATCTTTCACACG | 60.038 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
272 | 273 | 4.904154 | CGTTGTTGTCGAAAATTTCCTCTC | 59.096 | 41.667 | 0.00 | 0.00 | 0.00 | 3.20 |
318 | 319 | 4.080393 | CACATTTTGTTTTTGTGTGTGCG | 58.920 | 39.130 | 0.00 | 0.00 | 36.77 | 5.34 |
321 | 322 | 2.440539 | TTGTTTTTGTGTGTGCGGTT | 57.559 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
356 | 357 | 6.128138 | AGTTTTAGACCATAGCTCCTTGTT | 57.872 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
420 | 424 | 9.765795 | AATACTCTATTGGAAGAAATTCCTACG | 57.234 | 33.333 | 8.40 | 0.00 | 41.65 | 3.51 |
427 | 431 | 3.864003 | GGAAGAAATTCCTACGAGTTCGG | 59.136 | 47.826 | 6.48 | 0.00 | 39.73 | 4.30 |
428 | 432 | 4.492611 | GAAGAAATTCCTACGAGTTCGGT | 58.507 | 43.478 | 6.48 | 0.00 | 44.95 | 4.69 |
429 | 433 | 4.107363 | AGAAATTCCTACGAGTTCGGTC | 57.893 | 45.455 | 6.48 | 0.00 | 44.95 | 4.79 |
430 | 434 | 3.508793 | AGAAATTCCTACGAGTTCGGTCA | 59.491 | 43.478 | 6.48 | 0.00 | 44.95 | 4.02 |
431 | 435 | 3.505464 | AATTCCTACGAGTTCGGTCAG | 57.495 | 47.619 | 6.48 | 0.58 | 44.95 | 3.51 |
432 | 436 | 2.189594 | TTCCTACGAGTTCGGTCAGA | 57.810 | 50.000 | 6.48 | 0.00 | 44.95 | 3.27 |
480 | 484 | 1.720852 | GCAACTTAAATGCGGTGCAAG | 59.279 | 47.619 | 0.00 | 0.00 | 43.62 | 4.01 |
497 | 501 | 2.737679 | GCAAGCATCCATCAAAGAAGGC | 60.738 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
498 | 502 | 2.494471 | CAAGCATCCATCAAAGAAGGCA | 59.506 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
499 | 503 | 3.028094 | AGCATCCATCAAAGAAGGCAT | 57.972 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
542 | 548 | 7.619050 | AGCTTTCACTGATAATTCTTCTCTCA | 58.381 | 34.615 | 0.00 | 0.00 | 0.00 | 3.27 |
543 | 549 | 7.548780 | AGCTTTCACTGATAATTCTTCTCTCAC | 59.451 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
623 | 633 | 3.047796 | CACTTGCATGAAGTTCACAAGC | 58.952 | 45.455 | 25.14 | 20.80 | 42.70 | 4.01 |
628 | 638 | 2.351157 | GCATGAAGTTCACAAGCTGGAC | 60.351 | 50.000 | 7.96 | 0.00 | 0.00 | 4.02 |
631 | 641 | 1.795286 | GAAGTTCACAAGCTGGACTCG | 59.205 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
700 | 715 | 4.904251 | TCCATGACCAATCCCTTTGAAAAA | 59.096 | 37.500 | 0.00 | 0.00 | 37.53 | 1.94 |
711 | 726 | 7.669089 | ATCCCTTTGAAAAACTCAACCTTTA | 57.331 | 32.000 | 0.00 | 0.00 | 43.90 | 1.85 |
757 | 772 | 4.487714 | TGGTCACTTCTCTCACTTGTTT | 57.512 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
758 | 773 | 4.442706 | TGGTCACTTCTCTCACTTGTTTC | 58.557 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
820 | 840 | 2.166907 | TGGTGTTGACCCAACCAATT | 57.833 | 45.000 | 7.29 | 0.00 | 42.96 | 2.32 |
831 | 851 | 3.319689 | ACCCAACCAATTTTAGGTCGTTG | 59.680 | 43.478 | 0.00 | 0.00 | 38.76 | 4.10 |
832 | 852 | 3.305744 | CCCAACCAATTTTAGGTCGTTGG | 60.306 | 47.826 | 9.32 | 9.32 | 46.32 | 3.77 |
841 | 861 | 0.599558 | TAGGTCGTTGGTTGAGGACG | 59.400 | 55.000 | 0.00 | 0.00 | 35.77 | 4.79 |
856 | 876 | 3.358076 | GACGTCTTCTCGGGCAGGG | 62.358 | 68.421 | 8.70 | 0.00 | 34.94 | 4.45 |
869 | 889 | 2.335712 | GCAGGGGCAGTTGTAGCAC | 61.336 | 63.158 | 0.00 | 0.00 | 40.72 | 4.40 |
900 | 920 | 2.685999 | GGGCAGCCTTCCCTGATT | 59.314 | 61.111 | 12.43 | 0.00 | 40.66 | 2.57 |
932 | 952 | 1.719600 | GAACAGCATCAGTTCGAGCT | 58.280 | 50.000 | 0.00 | 0.00 | 36.40 | 4.09 |
977 | 997 | 5.221904 | CCATTTTGTCTCCCTTCCCATTTTT | 60.222 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
1092 | 1114 | 3.793144 | GCAGCTTTGTCTCCGGCG | 61.793 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
1140 | 1162 | 1.812093 | CTCCGTCTCGTCGCTCTCT | 60.812 | 63.158 | 0.00 | 0.00 | 0.00 | 3.10 |
1141 | 1163 | 1.363145 | CTCCGTCTCGTCGCTCTCTT | 61.363 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1152 | 1174 | 1.444119 | CGCTCTCTTCCTCCCTCTCG | 61.444 | 65.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1155 | 1177 | 0.395036 | TCTCTTCCTCCCTCTCGCAG | 60.395 | 60.000 | 0.00 | 0.00 | 0.00 | 5.18 |
1230 | 1252 | 0.529833 | CTCTCATGTCCGTCTGCAGT | 59.470 | 55.000 | 14.67 | 0.00 | 0.00 | 4.40 |
1368 | 1396 | 4.742649 | TCCGACGGCCTGCTCTCT | 62.743 | 66.667 | 9.66 | 0.00 | 0.00 | 3.10 |
1462 | 1490 | 3.691342 | CGGGGTCGTGCTCTTCCA | 61.691 | 66.667 | 0.00 | 0.00 | 0.00 | 3.53 |
1503 | 1531 | 3.200887 | GATGCTCGACTCCGGCGAT | 62.201 | 63.158 | 9.30 | 0.00 | 37.13 | 4.58 |
1509 | 1537 | 2.482333 | CGACTCCGGCGATCTCCTT | 61.482 | 63.158 | 9.30 | 0.00 | 0.00 | 3.36 |
1573 | 1601 | 4.020617 | CCTCCGAGGCCACTTGCA | 62.021 | 66.667 | 5.01 | 0.00 | 43.89 | 4.08 |
1585 | 1613 | 1.108727 | CACTTGCAGGTTCTTGGCCA | 61.109 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1722 | 1750 | 2.910479 | ACTGTGTCGGCTCGTGGA | 60.910 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
1977 | 2005 | 2.027625 | CAAGGTCGAGGCGTTCCAC | 61.028 | 63.158 | 0.00 | 0.00 | 33.74 | 4.02 |
2083 | 2111 | 3.976701 | AACATGGCCTCCTTCCGCG | 62.977 | 63.158 | 3.32 | 0.00 | 0.00 | 6.46 |
2124 | 2152 | 2.679716 | GCCACCTTCCTCAGCCAT | 59.320 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
2127 | 2155 | 0.679002 | CCACCTTCCTCAGCCATGTG | 60.679 | 60.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2268 | 2299 | 2.821366 | GTGTGGATGCTGGAGGCG | 60.821 | 66.667 | 0.00 | 0.00 | 45.43 | 5.52 |
2376 | 2407 | 0.467384 | AGGAGATGGGCATCGTGAAG | 59.533 | 55.000 | 0.00 | 0.00 | 42.48 | 3.02 |
2623 | 2654 | 2.663188 | GCGATCCATCCGACCTGC | 60.663 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
2624 | 2655 | 2.355126 | CGATCCATCCGACCTGCG | 60.355 | 66.667 | 0.00 | 0.00 | 40.47 | 5.18 |
2625 | 2656 | 2.845550 | CGATCCATCCGACCTGCGA | 61.846 | 63.158 | 0.00 | 0.00 | 44.57 | 5.10 |
2626 | 2657 | 1.300233 | GATCCATCCGACCTGCGAC | 60.300 | 63.158 | 0.00 | 0.00 | 44.57 | 5.19 |
2627 | 2658 | 1.739338 | GATCCATCCGACCTGCGACT | 61.739 | 60.000 | 0.00 | 0.00 | 44.57 | 4.18 |
2637 | 2675 | 0.179000 | ACCTGCGACTTGGATCATCC | 59.821 | 55.000 | 0.00 | 0.00 | 36.96 | 3.51 |
2654 | 2692 | 2.113860 | TCCATCTTGCCTTGTACAGC | 57.886 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2656 | 2694 | 2.025981 | TCCATCTTGCCTTGTACAGCAT | 60.026 | 45.455 | 10.26 | 0.00 | 39.11 | 3.79 |
2675 | 2713 | 1.375908 | GTGCCACGGATTCAGCTCA | 60.376 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
2676 | 2714 | 1.078918 | TGCCACGGATTCAGCTCAG | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 3.35 |
2678 | 2716 | 1.086634 | GCCACGGATTCAGCTCAGTC | 61.087 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2679 | 2717 | 0.460987 | CCACGGATTCAGCTCAGTCC | 60.461 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2680 | 2718 | 0.247460 | CACGGATTCAGCTCAGTCCA | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2681 | 2719 | 0.534412 | ACGGATTCAGCTCAGTCCAG | 59.466 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2682 | 2720 | 0.179089 | CGGATTCAGCTCAGTCCAGG | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
2686 | 2724 | 0.035725 | TTCAGCTCAGTCCAGGCATG | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2700 | 2738 | 3.128242 | CCAGGCATGCTTTTTCTCTGTAG | 59.872 | 47.826 | 18.92 | 0.00 | 0.00 | 2.74 |
2717 | 2755 | 8.116651 | TCTCTGTAGGAATCTCTGTATATTGC | 57.883 | 38.462 | 0.00 | 0.00 | 0.00 | 3.56 |
2740 | 2783 | 3.676172 | TGTTTTTCATACGAGTGGTAGCG | 59.324 | 43.478 | 0.00 | 0.00 | 33.84 | 4.26 |
2770 | 2813 | 7.525688 | TTAGATGACGATGATGAGTGTTTTC | 57.474 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2771 | 2814 | 4.872691 | AGATGACGATGATGAGTGTTTTCC | 59.127 | 41.667 | 0.00 | 0.00 | 0.00 | 3.13 |
2772 | 2815 | 4.271696 | TGACGATGATGAGTGTTTTCCT | 57.728 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
2773 | 2816 | 4.641396 | TGACGATGATGAGTGTTTTCCTT | 58.359 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
2774 | 2817 | 5.063204 | TGACGATGATGAGTGTTTTCCTTT | 58.937 | 37.500 | 0.00 | 0.00 | 0.00 | 3.11 |
2802 | 2845 | 2.811431 | TGTGCGTGAACCCAATAAGAAG | 59.189 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
2807 | 2850 | 3.007635 | GTGAACCCAATAAGAAGACGGG | 58.992 | 50.000 | 0.00 | 0.00 | 43.02 | 5.28 |
2847 | 2898 | 7.845066 | TCTCTGATGTGAAGAAATCAATCTG | 57.155 | 36.000 | 0.00 | 0.00 | 40.50 | 2.90 |
2851 | 2902 | 6.792326 | TGATGTGAAGAAATCAATCTGCATC | 58.208 | 36.000 | 0.00 | 0.00 | 40.50 | 3.91 |
2855 | 2906 | 5.011586 | TGAAGAAATCAATCTGCATCCACA | 58.988 | 37.500 | 0.00 | 0.00 | 34.30 | 4.17 |
2865 | 2916 | 0.107643 | TGCATCCACAGTCGAACCAA | 59.892 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2910 | 2970 | 3.137913 | AGATGTTGAGAATATGGCCTGCT | 59.862 | 43.478 | 3.32 | 0.00 | 0.00 | 4.24 |
2913 | 2973 | 2.245159 | TGAGAATATGGCCTGCTTCG | 57.755 | 50.000 | 3.32 | 0.00 | 0.00 | 3.79 |
2922 | 2982 | 2.345244 | CCTGCTTCGGCTCACTGT | 59.655 | 61.111 | 0.00 | 0.00 | 42.37 | 3.55 |
2923 | 2983 | 1.739562 | CCTGCTTCGGCTCACTGTC | 60.740 | 63.158 | 0.00 | 0.00 | 42.37 | 3.51 |
2924 | 2984 | 1.005748 | CTGCTTCGGCTCACTGTCA | 60.006 | 57.895 | 0.00 | 0.00 | 42.37 | 3.58 |
2925 | 2985 | 0.390866 | CTGCTTCGGCTCACTGTCAT | 60.391 | 55.000 | 0.00 | 0.00 | 42.37 | 3.06 |
2928 | 2988 | 1.800805 | CTTCGGCTCACTGTCATTGT | 58.199 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2929 | 2989 | 1.462283 | CTTCGGCTCACTGTCATTGTG | 59.538 | 52.381 | 0.00 | 0.00 | 36.82 | 3.33 |
2943 | 3015 | 3.927142 | GTCATTGTGTGTCTAGGTGCTAC | 59.073 | 47.826 | 0.00 | 0.00 | 0.00 | 3.58 |
2958 | 3030 | 2.499197 | TGCTACCGCATCAAACTGAAA | 58.501 | 42.857 | 0.00 | 0.00 | 42.25 | 2.69 |
2998 | 3073 | 4.082274 | TGCGACGTCTCGAGTTAATTAA | 57.918 | 40.909 | 14.70 | 0.00 | 43.06 | 1.40 |
2999 | 3074 | 4.093514 | TGCGACGTCTCGAGTTAATTAAG | 58.906 | 43.478 | 14.70 | 0.00 | 43.06 | 1.85 |
3000 | 3075 | 3.061994 | GCGACGTCTCGAGTTAATTAAGC | 60.062 | 47.826 | 14.70 | 5.81 | 43.06 | 3.09 |
3001 | 3076 | 4.341099 | CGACGTCTCGAGTTAATTAAGCT | 58.659 | 43.478 | 14.70 | 0.00 | 43.06 | 3.74 |
3016 | 3117 | 0.759346 | AAGCTCGTCTTGTTGGAGGT | 59.241 | 50.000 | 0.00 | 0.00 | 39.97 | 3.85 |
3072 | 3173 | 2.124529 | GCTGGTTGCTAGGGAGGC | 60.125 | 66.667 | 0.00 | 0.00 | 38.95 | 4.70 |
3101 | 3214 | 4.802999 | CACTTTCTCTGAAAGGAAATGCC | 58.197 | 43.478 | 19.86 | 0.00 | 34.31 | 4.40 |
3118 | 3231 | 1.875963 | CCACAGGTTGGCAACGATC | 59.124 | 57.895 | 22.95 | 10.35 | 39.07 | 3.69 |
3149 | 3262 | 2.321719 | GGAATACCCACTCTCTCCCTC | 58.678 | 57.143 | 0.00 | 0.00 | 34.14 | 4.30 |
3150 | 3263 | 2.359355 | GGAATACCCACTCTCTCCCTCA | 60.359 | 54.545 | 0.00 | 0.00 | 34.14 | 3.86 |
3151 | 3264 | 2.765689 | ATACCCACTCTCTCCCTCAG | 57.234 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3152 | 3265 | 0.631753 | TACCCACTCTCTCCCTCAGG | 59.368 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3153 | 3266 | 1.382420 | CCCACTCTCTCCCTCAGGG | 60.382 | 68.421 | 1.80 | 1.80 | 46.11 | 4.45 |
3154 | 3267 | 2.063378 | CCACTCTCTCCCTCAGGGC | 61.063 | 68.421 | 4.08 | 0.00 | 43.94 | 5.19 |
3158 | 3300 | 0.756442 | CTCTCTCCCTCAGGGCTCAG | 60.756 | 65.000 | 4.08 | 0.00 | 43.94 | 3.35 |
3160 | 3302 | 3.478274 | CTCCCTCAGGGCTCAGGC | 61.478 | 72.222 | 4.08 | 0.00 | 43.94 | 4.85 |
3171 | 3313 | 0.905357 | GGCTCAGGCTACTCTTTCCA | 59.095 | 55.000 | 0.00 | 0.00 | 38.73 | 3.53 |
3267 | 3430 | 2.679837 | CGTCAGATTCAGATTTGGGTGG | 59.320 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3294 | 3457 | 2.098770 | GCATTGCATCTGAAGAACCCTC | 59.901 | 50.000 | 3.15 | 0.00 | 0.00 | 4.30 |
3305 | 3468 | 3.511146 | TGAAGAACCCTCCATGCATTTTC | 59.489 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
3306 | 3469 | 3.463048 | AGAACCCTCCATGCATTTTCT | 57.537 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
3309 | 3472 | 4.221482 | AGAACCCTCCATGCATTTTCTTTC | 59.779 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
3316 | 3479 | 4.281435 | TCCATGCATTTTCTTTCTCTTGCA | 59.719 | 37.500 | 0.00 | 0.00 | 43.42 | 4.08 |
3325 | 3488 | 5.652744 | TTCTTTCTCTTGCAACGACTAAC | 57.347 | 39.130 | 0.00 | 0.00 | 0.00 | 2.34 |
3327 | 3490 | 3.462483 | TTCTCTTGCAACGACTAACCA | 57.538 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
3334 | 3497 | 1.135689 | GCAACGACTAACCATGCAAGG | 60.136 | 52.381 | 6.39 | 6.39 | 37.00 | 3.61 |
3401 | 3571 | 7.549134 | GGTCAACTGTTGATAATCATGTACTCA | 59.451 | 37.037 | 24.44 | 0.00 | 42.47 | 3.41 |
3402 | 3572 | 8.935844 | GTCAACTGTTGATAATCATGTACTCAA | 58.064 | 33.333 | 24.44 | 0.00 | 42.47 | 3.02 |
3403 | 3573 | 9.154847 | TCAACTGTTGATAATCATGTACTCAAG | 57.845 | 33.333 | 18.69 | 0.00 | 34.08 | 3.02 |
3404 | 3574 | 8.393366 | CAACTGTTGATAATCATGTACTCAAGG | 58.607 | 37.037 | 15.26 | 0.00 | 0.00 | 3.61 |
3405 | 3575 | 7.050377 | ACTGTTGATAATCATGTACTCAAGGG | 58.950 | 38.462 | 0.00 | 0.00 | 0.00 | 3.95 |
3467 | 3661 | 7.503549 | GTACAAATGTACTACTTCCTTCGTC | 57.496 | 40.000 | 14.84 | 0.00 | 45.47 | 4.20 |
3468 | 3662 | 5.476614 | ACAAATGTACTACTTCCTTCGTCC | 58.523 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
3469 | 3663 | 4.732672 | AATGTACTACTTCCTTCGTCCC | 57.267 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
3470 | 3664 | 3.159213 | TGTACTACTTCCTTCGTCCCA | 57.841 | 47.619 | 0.00 | 0.00 | 0.00 | 4.37 |
3471 | 3665 | 3.705051 | TGTACTACTTCCTTCGTCCCAT | 58.295 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
3472 | 3666 | 4.858850 | TGTACTACTTCCTTCGTCCCATA | 58.141 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
3473 | 3667 | 5.263599 | TGTACTACTTCCTTCGTCCCATAA | 58.736 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
3474 | 3668 | 5.895534 | TGTACTACTTCCTTCGTCCCATAAT | 59.104 | 40.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3475 | 3669 | 7.062322 | TGTACTACTTCCTTCGTCCCATAATA | 58.938 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
3476 | 3670 | 7.727186 | TGTACTACTTCCTTCGTCCCATAATAT | 59.273 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
3477 | 3671 | 9.236006 | GTACTACTTCCTTCGTCCCATAATATA | 57.764 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
3478 | 3672 | 8.716674 | ACTACTTCCTTCGTCCCATAATATAA | 57.283 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
3479 | 3673 | 8.804204 | ACTACTTCCTTCGTCCCATAATATAAG | 58.196 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
3480 | 3674 | 7.850935 | ACTTCCTTCGTCCCATAATATAAGA | 57.149 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3481 | 3675 | 8.258850 | ACTTCCTTCGTCCCATAATATAAGAA | 57.741 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
3482 | 3676 | 8.881262 | ACTTCCTTCGTCCCATAATATAAGAAT | 58.119 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
3483 | 3677 | 9.155975 | CTTCCTTCGTCCCATAATATAAGAATG | 57.844 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
3484 | 3678 | 8.202461 | TCCTTCGTCCCATAATATAAGAATGT | 57.798 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
3485 | 3679 | 8.656806 | TCCTTCGTCCCATAATATAAGAATGTT | 58.343 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
3486 | 3680 | 9.284968 | CCTTCGTCCCATAATATAAGAATGTTT | 57.715 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3502 | 3696 | 8.603242 | AAGAATGTTTTTGACACGAGTATAGT | 57.397 | 30.769 | 0.00 | 0.00 | 42.04 | 2.12 |
3503 | 3697 | 9.701098 | AAGAATGTTTTTGACACGAGTATAGTA | 57.299 | 29.630 | 0.00 | 0.00 | 42.04 | 1.82 |
3504 | 3698 | 9.136952 | AGAATGTTTTTGACACGAGTATAGTAC | 57.863 | 33.333 | 0.00 | 0.00 | 42.04 | 2.73 |
3505 | 3699 | 8.821147 | AATGTTTTTGACACGAGTATAGTACA | 57.179 | 30.769 | 0.00 | 0.00 | 42.04 | 2.90 |
3506 | 3700 | 7.862741 | TGTTTTTGACACGAGTATAGTACAG | 57.137 | 36.000 | 0.00 | 0.00 | 32.00 | 2.74 |
3507 | 3701 | 7.428020 | TGTTTTTGACACGAGTATAGTACAGT | 58.572 | 34.615 | 0.00 | 0.00 | 32.00 | 3.55 |
3508 | 3702 | 7.380333 | TGTTTTTGACACGAGTATAGTACAGTG | 59.620 | 37.037 | 0.00 | 11.47 | 41.80 | 3.66 |
3510 | 3704 | 6.564709 | TTGACACGAGTATAGTACAGTGTT | 57.435 | 37.500 | 0.00 | 0.00 | 45.66 | 3.32 |
3511 | 3705 | 7.671495 | TTGACACGAGTATAGTACAGTGTTA | 57.329 | 36.000 | 0.00 | 12.40 | 45.66 | 2.41 |
3512 | 3706 | 7.065216 | TGACACGAGTATAGTACAGTGTTAC | 57.935 | 40.000 | 0.00 | 0.00 | 45.66 | 2.50 |
3513 | 3707 | 6.650390 | TGACACGAGTATAGTACAGTGTTACA | 59.350 | 38.462 | 0.00 | 11.23 | 45.66 | 2.41 |
3514 | 3708 | 7.173047 | TGACACGAGTATAGTACAGTGTTACAA | 59.827 | 37.037 | 0.00 | 0.00 | 45.66 | 2.41 |
3515 | 3709 | 7.874940 | ACACGAGTATAGTACAGTGTTACAAA | 58.125 | 34.615 | 0.00 | 0.00 | 44.40 | 2.83 |
3516 | 3710 | 8.517878 | ACACGAGTATAGTACAGTGTTACAAAT | 58.482 | 33.333 | 0.00 | 0.00 | 44.40 | 2.32 |
3517 | 3711 | 8.795341 | CACGAGTATAGTACAGTGTTACAAATG | 58.205 | 37.037 | 0.00 | 0.00 | 35.96 | 2.32 |
3518 | 3712 | 8.517878 | ACGAGTATAGTACAGTGTTACAAATGT | 58.482 | 33.333 | 0.00 | 9.03 | 0.00 | 2.71 |
3519 | 3713 | 9.350357 | CGAGTATAGTACAGTGTTACAAATGTT | 57.650 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
3541 | 3735 | 9.753674 | ATGTTTTTATATTTTGAGACAGAGGGA | 57.246 | 29.630 | 0.00 | 0.00 | 0.00 | 4.20 |
3542 | 3736 | 9.231297 | TGTTTTTATATTTTGAGACAGAGGGAG | 57.769 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
3543 | 3737 | 9.232473 | GTTTTTATATTTTGAGACAGAGGGAGT | 57.768 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
3546 | 3740 | 9.488762 | TTTATATTTTGAGACAGAGGGAGTAGA | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
3547 | 3741 | 7.979786 | ATATTTTGAGACAGAGGGAGTAGAA | 57.020 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3548 | 3742 | 6.882768 | ATTTTGAGACAGAGGGAGTAGAAT | 57.117 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
3549 | 3743 | 5.667539 | TTTGAGACAGAGGGAGTAGAATG | 57.332 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
3550 | 3744 | 4.592997 | TGAGACAGAGGGAGTAGAATGA | 57.407 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3551 | 3745 | 4.274147 | TGAGACAGAGGGAGTAGAATGAC | 58.726 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
3552 | 3746 | 4.263949 | TGAGACAGAGGGAGTAGAATGACA | 60.264 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
3553 | 3747 | 4.277476 | AGACAGAGGGAGTAGAATGACAG | 58.723 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3554 | 3748 | 4.017958 | AGACAGAGGGAGTAGAATGACAGA | 60.018 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
3555 | 3749 | 4.277476 | ACAGAGGGAGTAGAATGACAGAG | 58.723 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
3556 | 3750 | 3.636300 | CAGAGGGAGTAGAATGACAGAGG | 59.364 | 52.174 | 0.00 | 0.00 | 0.00 | 3.69 |
3557 | 3751 | 2.962421 | GAGGGAGTAGAATGACAGAGGG | 59.038 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
3558 | 3752 | 1.414550 | GGGAGTAGAATGACAGAGGGC | 59.585 | 57.143 | 0.00 | 0.00 | 0.00 | 5.19 |
3559 | 3753 | 1.067821 | GGAGTAGAATGACAGAGGGCG | 59.932 | 57.143 | 0.00 | 0.00 | 0.00 | 6.13 |
3560 | 3754 | 1.067821 | GAGTAGAATGACAGAGGGCGG | 59.932 | 57.143 | 0.00 | 0.00 | 0.00 | 6.13 |
3561 | 3755 | 0.105039 | GTAGAATGACAGAGGGCGGG | 59.895 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
3562 | 3756 | 0.032515 | TAGAATGACAGAGGGCGGGA | 60.033 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
3563 | 3757 | 0.909610 | AGAATGACAGAGGGCGGGAA | 60.910 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
3564 | 3758 | 0.744771 | GAATGACAGAGGGCGGGAAC | 60.745 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
3565 | 3759 | 1.488705 | AATGACAGAGGGCGGGAACA | 61.489 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3566 | 3760 | 1.903877 | ATGACAGAGGGCGGGAACAG | 61.904 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3567 | 3761 | 3.959991 | GACAGAGGGCGGGAACAGC | 62.960 | 68.421 | 0.00 | 0.00 | 0.00 | 4.40 |
3578 | 3772 | 4.465512 | GAACAGCGGCATGGCGTG | 62.466 | 66.667 | 37.28 | 32.45 | 38.18 | 5.34 |
3586 | 3780 | 2.202650 | GCATGGCGTGGCATGTTC | 60.203 | 61.111 | 29.50 | 15.50 | 0.00 | 3.18 |
3587 | 3781 | 2.703798 | GCATGGCGTGGCATGTTCT | 61.704 | 57.895 | 29.50 | 0.00 | 0.00 | 3.01 |
3588 | 3782 | 1.430632 | CATGGCGTGGCATGTTCTC | 59.569 | 57.895 | 23.71 | 0.00 | 0.00 | 2.87 |
3589 | 3783 | 1.750399 | ATGGCGTGGCATGTTCTCC | 60.750 | 57.895 | 8.23 | 1.32 | 0.00 | 3.71 |
3590 | 3784 | 3.134127 | GGCGTGGCATGTTCTCCC | 61.134 | 66.667 | 8.75 | 0.00 | 0.00 | 4.30 |
3591 | 3785 | 2.045926 | GCGTGGCATGTTCTCCCT | 60.046 | 61.111 | 8.75 | 0.00 | 0.00 | 4.20 |
3592 | 3786 | 2.401766 | GCGTGGCATGTTCTCCCTG | 61.402 | 63.158 | 8.75 | 0.00 | 0.00 | 4.45 |
3593 | 3787 | 1.296392 | CGTGGCATGTTCTCCCTGA | 59.704 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
3594 | 3788 | 1.021390 | CGTGGCATGTTCTCCCTGAC | 61.021 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3595 | 3789 | 0.678048 | GTGGCATGTTCTCCCTGACC | 60.678 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3596 | 3790 | 0.842030 | TGGCATGTTCTCCCTGACCT | 60.842 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3597 | 3791 | 0.393537 | GGCATGTTCTCCCTGACCTG | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3598 | 3792 | 0.393537 | GCATGTTCTCCCTGACCTGG | 60.394 | 60.000 | 0.00 | 0.00 | 0.00 | 4.45 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 5.047731 | GCAGAGATGGGCTTTAAGAAAACTT | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
11 | 12 | 2.295885 | CTGGCAGAGATGGGCTTTAAG | 58.704 | 52.381 | 9.42 | 0.00 | 0.00 | 1.85 |
13 | 14 | 0.107017 | GCTGGCAGAGATGGGCTTTA | 60.107 | 55.000 | 20.86 | 0.00 | 0.00 | 1.85 |
16 | 17 | 4.172512 | CGCTGGCAGAGATGGGCT | 62.173 | 66.667 | 20.86 | 0.00 | 0.00 | 5.19 |
17 | 18 | 4.166888 | TCGCTGGCAGAGATGGGC | 62.167 | 66.667 | 20.86 | 0.00 | 0.00 | 5.36 |
18 | 19 | 1.395045 | TACTCGCTGGCAGAGATGGG | 61.395 | 60.000 | 21.25 | 12.33 | 38.97 | 4.00 |
19 | 20 | 0.678395 | ATACTCGCTGGCAGAGATGG | 59.322 | 55.000 | 21.25 | 13.04 | 38.97 | 3.51 |
22 | 23 | 1.406898 | CAGAATACTCGCTGGCAGAGA | 59.593 | 52.381 | 20.86 | 20.31 | 38.97 | 3.10 |
29 | 30 | 1.929836 | GTTGCTCCAGAATACTCGCTG | 59.070 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
32 | 33 | 3.701241 | GAGAGTTGCTCCAGAATACTCG | 58.299 | 50.000 | 0.00 | 0.00 | 40.03 | 4.18 |
46 | 47 | 6.434028 | TCATTTGGTCTTAATTGGGAGAGTTG | 59.566 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
60 | 61 | 3.259123 | GGGCAAGTGAATCATTTGGTCTT | 59.741 | 43.478 | 17.99 | 0.00 | 32.85 | 3.01 |
64 | 65 | 3.674138 | CGAAGGGCAAGTGAATCATTTGG | 60.674 | 47.826 | 17.99 | 2.96 | 32.85 | 3.28 |
66 | 67 | 2.094545 | GCGAAGGGCAAGTGAATCATTT | 60.095 | 45.455 | 0.00 | 0.00 | 42.87 | 2.32 |
85 | 86 | 4.067192 | TCAAGATGATAATGTCCATGGCG | 58.933 | 43.478 | 6.96 | 0.00 | 0.00 | 5.69 |
103 | 104 | 4.217510 | TCCAAATGGCCCAAGATATCAAG | 58.782 | 43.478 | 0.00 | 0.00 | 34.44 | 3.02 |
147 | 148 | 0.879090 | GTTGGGCGTAACTCCTTTGG | 59.121 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
150 | 151 | 0.036306 | CAGGTTGGGCGTAACTCCTT | 59.964 | 55.000 | 3.76 | 0.00 | 0.00 | 3.36 |
152 | 153 | 1.376812 | CCAGGTTGGGCGTAACTCC | 60.377 | 63.158 | 3.76 | 0.00 | 32.67 | 3.85 |
160 | 161 | 0.468400 | TGGTGTAAACCAGGTTGGGC | 60.468 | 55.000 | 5.30 | 0.00 | 43.37 | 5.36 |
178 | 179 | 5.021033 | AGAGCAACATATGAGTTCCTCTG | 57.979 | 43.478 | 10.38 | 0.00 | 43.22 | 3.35 |
194 | 195 | 1.003580 | GGACCCATTCTGACAGAGCAA | 59.996 | 52.381 | 5.10 | 0.00 | 0.00 | 3.91 |
196 | 197 | 0.460987 | CGGACCCATTCTGACAGAGC | 60.461 | 60.000 | 5.10 | 0.00 | 31.20 | 4.09 |
218 | 219 | 4.214980 | AGTTGCAAAGATCGTGTGAAAG | 57.785 | 40.909 | 0.00 | 0.00 | 0.00 | 2.62 |
224 | 225 | 3.257393 | AGCTCTAGTTGCAAAGATCGTG | 58.743 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
227 | 228 | 4.267452 | CGAAGAGCTCTAGTTGCAAAGATC | 59.733 | 45.833 | 18.59 | 3.00 | 0.00 | 2.75 |
272 | 273 | 0.107945 | GGCTGCCTAGTCACCTCTTG | 60.108 | 60.000 | 12.43 | 0.00 | 0.00 | 3.02 |
318 | 319 | 9.609346 | TGGTCTAAAACTATGAGCTAAATAACC | 57.391 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
473 | 477 | 1.820519 | TCTTTGATGGATGCTTGCACC | 59.179 | 47.619 | 0.00 | 2.63 | 0.00 | 5.01 |
474 | 478 | 3.508762 | CTTCTTTGATGGATGCTTGCAC | 58.491 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
475 | 479 | 2.494471 | CCTTCTTTGATGGATGCTTGCA | 59.506 | 45.455 | 0.00 | 0.00 | 0.00 | 4.08 |
476 | 480 | 2.737679 | GCCTTCTTTGATGGATGCTTGC | 60.738 | 50.000 | 4.02 | 0.00 | 0.00 | 4.01 |
477 | 481 | 2.494471 | TGCCTTCTTTGATGGATGCTTG | 59.506 | 45.455 | 4.02 | 0.00 | 0.00 | 4.01 |
480 | 484 | 3.814005 | AATGCCTTCTTTGATGGATGC | 57.186 | 42.857 | 4.02 | 0.00 | 0.00 | 3.91 |
542 | 548 | 2.143122 | CGTATCTGGTTGCACTTGTGT | 58.857 | 47.619 | 2.61 | 0.00 | 0.00 | 3.72 |
543 | 549 | 2.096268 | CACGTATCTGGTTGCACTTGTG | 60.096 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
623 | 633 | 6.545298 | AGGTAGTAGTAATTTACCGAGTCCAG | 59.455 | 42.308 | 2.92 | 0.00 | 41.34 | 3.86 |
628 | 638 | 6.909357 | CGTTGAGGTAGTAGTAATTTACCGAG | 59.091 | 42.308 | 2.92 | 0.00 | 41.34 | 4.63 |
631 | 641 | 7.699812 | CACTCGTTGAGGTAGTAGTAATTTACC | 59.300 | 40.741 | 2.92 | 0.00 | 37.66 | 2.85 |
700 | 715 | 6.002653 | AGGTCAAAACTCTAAAGGTTGAGT | 57.997 | 37.500 | 0.00 | 0.00 | 44.40 | 3.41 |
711 | 726 | 4.823989 | CCAGTGAATGAAGGTCAAAACTCT | 59.176 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
768 | 788 | 1.134098 | CACAAGGGAGACAAGTGGTGT | 60.134 | 52.381 | 0.00 | 0.00 | 45.74 | 4.16 |
820 | 840 | 2.546373 | CGTCCTCAACCAACGACCTAAA | 60.546 | 50.000 | 0.00 | 0.00 | 38.65 | 1.85 |
831 | 851 | 0.109226 | CCGAGAAGACGTCCTCAACC | 60.109 | 60.000 | 16.22 | 4.43 | 0.00 | 3.77 |
832 | 852 | 0.109226 | CCCGAGAAGACGTCCTCAAC | 60.109 | 60.000 | 16.22 | 8.70 | 0.00 | 3.18 |
833 | 853 | 1.874345 | GCCCGAGAAGACGTCCTCAA | 61.874 | 60.000 | 16.22 | 0.00 | 0.00 | 3.02 |
834 | 854 | 2.341101 | GCCCGAGAAGACGTCCTCA | 61.341 | 63.158 | 16.22 | 0.00 | 0.00 | 3.86 |
841 | 861 | 4.475135 | GCCCCTGCCCGAGAAGAC | 62.475 | 72.222 | 0.00 | 0.00 | 0.00 | 3.01 |
856 | 876 | 2.380410 | CCGTCGTGCTACAACTGCC | 61.380 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
932 | 952 | 0.178981 | AAGAGGAGCAAAGCCAAGCA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
977 | 997 | 1.076014 | TGGTACTGGAGCGGAGACA | 59.924 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
1140 | 1162 | 3.077556 | GGCTGCGAGAGGGAGGAA | 61.078 | 66.667 | 0.00 | 0.00 | 34.11 | 3.36 |
1462 | 1490 | 2.029666 | GACCGCAGACACAGCAGT | 59.970 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
1569 | 1597 | 1.114722 | CCTTGGCCAAGAACCTGCAA | 61.115 | 55.000 | 41.10 | 6.66 | 40.79 | 4.08 |
1573 | 1601 | 0.402121 | GACTCCTTGGCCAAGAACCT | 59.598 | 55.000 | 41.10 | 22.49 | 40.79 | 3.50 |
2083 | 2111 | 4.561731 | GGCTATCTCGGCGATGAC | 57.438 | 61.111 | 11.27 | 0.00 | 33.48 | 3.06 |
2151 | 2179 | 4.920112 | TCCGTGCGGGTGTTGGTG | 62.920 | 66.667 | 10.94 | 0.00 | 37.00 | 4.17 |
2152 | 2180 | 4.619227 | CTCCGTGCGGGTGTTGGT | 62.619 | 66.667 | 10.94 | 0.00 | 37.00 | 3.67 |
2187 | 2215 | 3.175240 | CCGACGTTGCAGAGCTCG | 61.175 | 66.667 | 8.37 | 4.60 | 34.45 | 5.03 |
2215 | 2246 | 4.124943 | CCCGACCTCCTCCCTCGA | 62.125 | 72.222 | 0.00 | 0.00 | 0.00 | 4.04 |
2570 | 2601 | 3.195698 | GGAACACGCCGAGCATCC | 61.196 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
2637 | 2675 | 2.751259 | ACATGCTGTACAAGGCAAGATG | 59.249 | 45.455 | 16.35 | 11.66 | 41.90 | 2.90 |
2654 | 2692 | 1.028330 | AGCTGAATCCGTGGCACATG | 61.028 | 55.000 | 19.09 | 8.15 | 44.52 | 3.21 |
2656 | 2694 | 1.375908 | GAGCTGAATCCGTGGCACA | 60.376 | 57.895 | 19.09 | 0.00 | 0.00 | 4.57 |
2659 | 2697 | 1.078848 | ACTGAGCTGAATCCGTGGC | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
2675 | 2713 | 2.165998 | GAGAAAAAGCATGCCTGGACT | 58.834 | 47.619 | 15.66 | 9.02 | 0.00 | 3.85 |
2676 | 2714 | 2.094854 | CAGAGAAAAAGCATGCCTGGAC | 60.095 | 50.000 | 15.66 | 3.83 | 0.00 | 4.02 |
2678 | 2716 | 1.891150 | ACAGAGAAAAAGCATGCCTGG | 59.109 | 47.619 | 15.66 | 1.20 | 0.00 | 4.45 |
2679 | 2717 | 3.128242 | CCTACAGAGAAAAAGCATGCCTG | 59.872 | 47.826 | 15.66 | 14.65 | 0.00 | 4.85 |
2680 | 2718 | 3.009473 | TCCTACAGAGAAAAAGCATGCCT | 59.991 | 43.478 | 15.66 | 3.13 | 0.00 | 4.75 |
2681 | 2719 | 3.347216 | TCCTACAGAGAAAAAGCATGCC | 58.653 | 45.455 | 15.66 | 0.00 | 0.00 | 4.40 |
2682 | 2720 | 5.356470 | AGATTCCTACAGAGAAAAAGCATGC | 59.644 | 40.000 | 10.51 | 10.51 | 0.00 | 4.06 |
2686 | 2724 | 6.169800 | ACAGAGATTCCTACAGAGAAAAAGC | 58.830 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2700 | 2738 | 8.677300 | TGAAAAACAGCAATATACAGAGATTCC | 58.323 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
2717 | 2755 | 4.201589 | CGCTACCACTCGTATGAAAAACAG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
2740 | 2783 | 8.079203 | ACACTCATCATCGTCATCTAAATCTAC | 58.921 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2770 | 2813 | 2.148916 | TCACGCACACTGACTAAAGG | 57.851 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
2771 | 2814 | 2.221055 | GGTTCACGCACACTGACTAAAG | 59.779 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
2772 | 2815 | 2.206750 | GGTTCACGCACACTGACTAAA | 58.793 | 47.619 | 0.00 | 0.00 | 0.00 | 1.85 |
2773 | 2816 | 1.539496 | GGGTTCACGCACACTGACTAA | 60.539 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
2774 | 2817 | 0.032952 | GGGTTCACGCACACTGACTA | 59.967 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2802 | 2845 | 8.552034 | CAGAGATTAATTACAATCTTTCCCGTC | 58.448 | 37.037 | 5.20 | 0.00 | 43.66 | 4.79 |
2847 | 2898 | 1.398390 | GATTGGTTCGACTGTGGATGC | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
2886 | 2946 | 4.340381 | GCAGGCCATATTCTCAACATCTTT | 59.660 | 41.667 | 5.01 | 0.00 | 0.00 | 2.52 |
2910 | 2970 | 1.202639 | ACACAATGACAGTGAGCCGAA | 60.203 | 47.619 | 10.34 | 0.00 | 40.16 | 4.30 |
2913 | 2973 | 1.532868 | GACACACAATGACAGTGAGCC | 59.467 | 52.381 | 10.34 | 0.00 | 40.16 | 4.70 |
2920 | 2980 | 2.368548 | AGCACCTAGACACACAATGACA | 59.631 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
2922 | 2982 | 3.056107 | GGTAGCACCTAGACACACAATGA | 60.056 | 47.826 | 0.00 | 0.00 | 34.73 | 2.57 |
2923 | 2983 | 3.262420 | GGTAGCACCTAGACACACAATG | 58.738 | 50.000 | 0.00 | 0.00 | 34.73 | 2.82 |
2924 | 2984 | 2.094182 | CGGTAGCACCTAGACACACAAT | 60.094 | 50.000 | 0.00 | 0.00 | 35.66 | 2.71 |
2925 | 2985 | 1.271379 | CGGTAGCACCTAGACACACAA | 59.729 | 52.381 | 0.00 | 0.00 | 35.66 | 3.33 |
2928 | 2988 | 1.888018 | GCGGTAGCACCTAGACACA | 59.112 | 57.895 | 0.00 | 0.00 | 44.35 | 3.72 |
2929 | 2989 | 4.808649 | GCGGTAGCACCTAGACAC | 57.191 | 61.111 | 0.00 | 0.00 | 44.35 | 3.67 |
2943 | 3015 | 7.306167 | GCATTAATACATTTCAGTTTGATGCGG | 60.306 | 37.037 | 0.00 | 0.00 | 0.00 | 5.69 |
2952 | 3024 | 3.951037 | TGCCGGCATTAATACATTTCAGT | 59.049 | 39.130 | 29.03 | 0.00 | 0.00 | 3.41 |
2954 | 3026 | 4.400884 | AGTTGCCGGCATTAATACATTTCA | 59.599 | 37.500 | 33.25 | 7.34 | 0.00 | 2.69 |
2955 | 3027 | 4.739716 | CAGTTGCCGGCATTAATACATTTC | 59.260 | 41.667 | 33.25 | 1.90 | 0.00 | 2.17 |
2958 | 3030 | 2.034558 | GCAGTTGCCGGCATTAATACAT | 59.965 | 45.455 | 33.25 | 11.73 | 34.31 | 2.29 |
2998 | 3073 | 0.318762 | GACCTCCAACAAGACGAGCT | 59.681 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
2999 | 3074 | 0.033504 | TGACCTCCAACAAGACGAGC | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
3000 | 3075 | 1.341531 | ACTGACCTCCAACAAGACGAG | 59.658 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
3001 | 3076 | 1.340248 | GACTGACCTCCAACAAGACGA | 59.660 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
3003 | 3078 | 2.760374 | CTGACTGACCTCCAACAAGAC | 58.240 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
3016 | 3117 | 1.315981 | CCTACTGCCGAGCTGACTGA | 61.316 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3072 | 3173 | 1.888215 | TTCAGAGAAAGTGCCTGCTG | 58.112 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
3101 | 3214 | 0.798776 | GAGATCGTTGCCAACCTGTG | 59.201 | 55.000 | 1.21 | 0.00 | 0.00 | 3.66 |
3135 | 3248 | 4.371699 | CCTGAGGGAGAGAGTGGG | 57.628 | 66.667 | 0.00 | 0.00 | 33.58 | 4.61 |
3146 | 3259 | 1.382420 | AGTAGCCTGAGCCCTGAGG | 60.382 | 63.158 | 0.00 | 0.00 | 41.25 | 3.86 |
3147 | 3260 | 0.396974 | AGAGTAGCCTGAGCCCTGAG | 60.397 | 60.000 | 0.00 | 0.00 | 41.25 | 3.35 |
3149 | 3262 | 0.908198 | AAAGAGTAGCCTGAGCCCTG | 59.092 | 55.000 | 0.00 | 0.00 | 41.25 | 4.45 |
3150 | 3263 | 1.199615 | GAAAGAGTAGCCTGAGCCCT | 58.800 | 55.000 | 0.00 | 0.00 | 41.25 | 5.19 |
3151 | 3264 | 0.179234 | GGAAAGAGTAGCCTGAGCCC | 59.821 | 60.000 | 0.00 | 0.00 | 41.25 | 5.19 |
3152 | 3265 | 0.905357 | TGGAAAGAGTAGCCTGAGCC | 59.095 | 55.000 | 0.00 | 0.00 | 41.25 | 4.70 |
3153 | 3266 | 1.827969 | TCTGGAAAGAGTAGCCTGAGC | 59.172 | 52.381 | 0.00 | 0.00 | 40.32 | 4.26 |
3154 | 3267 | 4.081198 | ACAATCTGGAAAGAGTAGCCTGAG | 60.081 | 45.833 | 0.00 | 0.00 | 33.94 | 3.35 |
3158 | 3300 | 4.837972 | AGAACAATCTGGAAAGAGTAGCC | 58.162 | 43.478 | 0.00 | 0.00 | 33.59 | 3.93 |
3160 | 3302 | 6.706295 | AGGAAGAACAATCTGGAAAGAGTAG | 58.294 | 40.000 | 0.00 | 0.00 | 35.59 | 2.57 |
3201 | 3346 | 0.747644 | ATGCCGGTTCATGAATGCGA | 60.748 | 50.000 | 12.12 | 6.76 | 0.00 | 5.10 |
3267 | 3430 | 3.273434 | TCTTCAGATGCAATGCTACACC | 58.727 | 45.455 | 6.82 | 0.00 | 0.00 | 4.16 |
3294 | 3457 | 4.562082 | TGCAAGAGAAAGAAAATGCATGG | 58.438 | 39.130 | 0.00 | 0.00 | 38.73 | 3.66 |
3305 | 3468 | 3.807622 | TGGTTAGTCGTTGCAAGAGAAAG | 59.192 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
3306 | 3469 | 3.799366 | TGGTTAGTCGTTGCAAGAGAAA | 58.201 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
3309 | 3472 | 2.159653 | GCATGGTTAGTCGTTGCAAGAG | 60.160 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3316 | 3479 | 2.851263 | TCCTTGCATGGTTAGTCGTT | 57.149 | 45.000 | 17.54 | 0.00 | 0.00 | 3.85 |
3334 | 3497 | 4.213482 | GGGTTACGGATAACAATGCAGATC | 59.787 | 45.833 | 0.00 | 0.00 | 42.26 | 2.75 |
3401 | 3571 | 1.002257 | TGACGCATCATGCACCCTT | 60.002 | 52.632 | 11.00 | 0.00 | 45.36 | 3.95 |
3402 | 3572 | 1.746615 | GTGACGCATCATGCACCCT | 60.747 | 57.895 | 11.00 | 0.00 | 45.36 | 4.34 |
3403 | 3573 | 2.793946 | GTGACGCATCATGCACCC | 59.206 | 61.111 | 11.00 | 0.00 | 45.36 | 4.61 |
3404 | 3574 | 2.390599 | ACGTGACGCATCATGCACC | 61.391 | 57.895 | 11.00 | 0.53 | 45.36 | 5.01 |
3405 | 3575 | 1.225827 | CACGTGACGCATCATGCAC | 60.226 | 57.895 | 10.90 | 3.59 | 45.36 | 4.57 |
3446 | 3640 | 4.868734 | GGGACGAAGGAAGTAGTACATTTG | 59.131 | 45.833 | 2.52 | 0.00 | 0.00 | 2.32 |
3452 | 3646 | 9.812347 | TTATATTATGGGACGAAGGAAGTAGTA | 57.188 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
3453 | 3647 | 8.716674 | TTATATTATGGGACGAAGGAAGTAGT | 57.283 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
3454 | 3648 | 9.021807 | TCTTATATTATGGGACGAAGGAAGTAG | 57.978 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3455 | 3649 | 8.945195 | TCTTATATTATGGGACGAAGGAAGTA | 57.055 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
3456 | 3650 | 7.850935 | TCTTATATTATGGGACGAAGGAAGT | 57.149 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3457 | 3651 | 9.155975 | CATTCTTATATTATGGGACGAAGGAAG | 57.844 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
3458 | 3652 | 8.656806 | ACATTCTTATATTATGGGACGAAGGAA | 58.343 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
3459 | 3653 | 8.202461 | ACATTCTTATATTATGGGACGAAGGA | 57.798 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
3460 | 3654 | 8.848474 | AACATTCTTATATTATGGGACGAAGG | 57.152 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
3476 | 3670 | 9.701098 | ACTATACTCGTGTCAAAAACATTCTTA | 57.299 | 29.630 | 0.00 | 0.00 | 40.80 | 2.10 |
3477 | 3671 | 8.603242 | ACTATACTCGTGTCAAAAACATTCTT | 57.397 | 30.769 | 0.00 | 0.00 | 40.80 | 2.52 |
3478 | 3672 | 9.136952 | GTACTATACTCGTGTCAAAAACATTCT | 57.863 | 33.333 | 0.00 | 0.00 | 40.80 | 2.40 |
3479 | 3673 | 8.918658 | TGTACTATACTCGTGTCAAAAACATTC | 58.081 | 33.333 | 0.00 | 0.00 | 40.80 | 2.67 |
3480 | 3674 | 8.821147 | TGTACTATACTCGTGTCAAAAACATT | 57.179 | 30.769 | 0.00 | 0.00 | 40.80 | 2.71 |
3481 | 3675 | 8.086522 | ACTGTACTATACTCGTGTCAAAAACAT | 58.913 | 33.333 | 0.00 | 0.00 | 40.80 | 2.71 |
3482 | 3676 | 7.380333 | CACTGTACTATACTCGTGTCAAAAACA | 59.620 | 37.037 | 0.00 | 0.00 | 34.78 | 2.83 |
3483 | 3677 | 7.380602 | ACACTGTACTATACTCGTGTCAAAAAC | 59.619 | 37.037 | 0.00 | 0.00 | 38.60 | 2.43 |
3484 | 3678 | 7.428020 | ACACTGTACTATACTCGTGTCAAAAA | 58.572 | 34.615 | 0.00 | 0.00 | 38.60 | 1.94 |
3485 | 3679 | 6.973843 | ACACTGTACTATACTCGTGTCAAAA | 58.026 | 36.000 | 0.00 | 0.00 | 38.60 | 2.44 |
3486 | 3680 | 6.564709 | ACACTGTACTATACTCGTGTCAAA | 57.435 | 37.500 | 0.00 | 0.00 | 38.60 | 2.69 |
3487 | 3681 | 6.564709 | AACACTGTACTATACTCGTGTCAA | 57.435 | 37.500 | 11.99 | 0.00 | 40.44 | 3.18 |
3488 | 3682 | 6.650390 | TGTAACACTGTACTATACTCGTGTCA | 59.350 | 38.462 | 11.99 | 7.00 | 40.44 | 3.58 |
3489 | 3683 | 7.065216 | TGTAACACTGTACTATACTCGTGTC | 57.935 | 40.000 | 11.99 | 5.32 | 40.44 | 3.67 |
3490 | 3684 | 7.439157 | TTGTAACACTGTACTATACTCGTGT | 57.561 | 36.000 | 0.00 | 0.00 | 41.86 | 4.49 |
3491 | 3685 | 8.795341 | CATTTGTAACACTGTACTATACTCGTG | 58.205 | 37.037 | 0.00 | 0.00 | 37.07 | 4.35 |
3492 | 3686 | 8.517878 | ACATTTGTAACACTGTACTATACTCGT | 58.482 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
3493 | 3687 | 8.906636 | ACATTTGTAACACTGTACTATACTCG | 57.093 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
3515 | 3709 | 9.753674 | TCCCTCTGTCTCAAAATATAAAAACAT | 57.246 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
3516 | 3710 | 9.231297 | CTCCCTCTGTCTCAAAATATAAAAACA | 57.769 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3517 | 3711 | 9.232473 | ACTCCCTCTGTCTCAAAATATAAAAAC | 57.768 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3520 | 3714 | 9.488762 | TCTACTCCCTCTGTCTCAAAATATAAA | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3521 | 3715 | 9.488762 | TTCTACTCCCTCTGTCTCAAAATATAA | 57.511 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
3522 | 3716 | 9.661954 | ATTCTACTCCCTCTGTCTCAAAATATA | 57.338 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
3523 | 3717 | 7.979786 | TTCTACTCCCTCTGTCTCAAAATAT | 57.020 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
3524 | 3718 | 7.619698 | TCATTCTACTCCCTCTGTCTCAAAATA | 59.380 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
3525 | 3719 | 6.441924 | TCATTCTACTCCCTCTGTCTCAAAAT | 59.558 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
3526 | 3720 | 5.780282 | TCATTCTACTCCCTCTGTCTCAAAA | 59.220 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
3527 | 3721 | 5.186021 | GTCATTCTACTCCCTCTGTCTCAAA | 59.814 | 44.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3528 | 3722 | 4.707448 | GTCATTCTACTCCCTCTGTCTCAA | 59.293 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
3529 | 3723 | 4.263949 | TGTCATTCTACTCCCTCTGTCTCA | 60.264 | 45.833 | 0.00 | 0.00 | 0.00 | 3.27 |
3530 | 3724 | 4.274147 | TGTCATTCTACTCCCTCTGTCTC | 58.726 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
3531 | 3725 | 4.017958 | TCTGTCATTCTACTCCCTCTGTCT | 60.018 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
3532 | 3726 | 4.274147 | TCTGTCATTCTACTCCCTCTGTC | 58.726 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
3533 | 3727 | 4.277476 | CTCTGTCATTCTACTCCCTCTGT | 58.723 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
3534 | 3728 | 3.636300 | CCTCTGTCATTCTACTCCCTCTG | 59.364 | 52.174 | 0.00 | 0.00 | 0.00 | 3.35 |
3535 | 3729 | 3.373658 | CCCTCTGTCATTCTACTCCCTCT | 60.374 | 52.174 | 0.00 | 0.00 | 0.00 | 3.69 |
3536 | 3730 | 2.962421 | CCCTCTGTCATTCTACTCCCTC | 59.038 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
3537 | 3731 | 2.957312 | GCCCTCTGTCATTCTACTCCCT | 60.957 | 54.545 | 0.00 | 0.00 | 0.00 | 4.20 |
3538 | 3732 | 1.414550 | GCCCTCTGTCATTCTACTCCC | 59.585 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
3539 | 3733 | 1.067821 | CGCCCTCTGTCATTCTACTCC | 59.932 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
3540 | 3734 | 1.067821 | CCGCCCTCTGTCATTCTACTC | 59.932 | 57.143 | 0.00 | 0.00 | 0.00 | 2.59 |
3541 | 3735 | 1.115467 | CCGCCCTCTGTCATTCTACT | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3542 | 3736 | 0.105039 | CCCGCCCTCTGTCATTCTAC | 59.895 | 60.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3543 | 3737 | 0.032515 | TCCCGCCCTCTGTCATTCTA | 60.033 | 55.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3544 | 3738 | 0.909610 | TTCCCGCCCTCTGTCATTCT | 60.910 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
3545 | 3739 | 0.744771 | GTTCCCGCCCTCTGTCATTC | 60.745 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
3546 | 3740 | 1.299976 | GTTCCCGCCCTCTGTCATT | 59.700 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
3547 | 3741 | 1.903877 | CTGTTCCCGCCCTCTGTCAT | 61.904 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3548 | 3742 | 2.525629 | TGTTCCCGCCCTCTGTCA | 60.526 | 61.111 | 0.00 | 0.00 | 0.00 | 3.58 |
3549 | 3743 | 2.266055 | CTGTTCCCGCCCTCTGTC | 59.734 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3550 | 3744 | 4.021925 | GCTGTTCCCGCCCTCTGT | 62.022 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
3561 | 3755 | 4.465512 | CACGCCATGCCGCTGTTC | 62.466 | 66.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3568 | 3762 | 3.704908 | GAACATGCCACGCCATGCC | 62.705 | 63.158 | 10.19 | 1.63 | 44.98 | 4.40 |
3569 | 3763 | 2.202650 | GAACATGCCACGCCATGC | 60.203 | 61.111 | 10.19 | 0.00 | 44.98 | 4.06 |
3570 | 3764 | 1.430632 | GAGAACATGCCACGCCATG | 59.569 | 57.895 | 9.06 | 9.06 | 46.19 | 3.66 |
3571 | 3765 | 1.750399 | GGAGAACATGCCACGCCAT | 60.750 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
3572 | 3766 | 2.359850 | GGAGAACATGCCACGCCA | 60.360 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
3573 | 3767 | 3.134127 | GGGAGAACATGCCACGCC | 61.134 | 66.667 | 0.00 | 0.00 | 39.77 | 5.68 |
3574 | 3768 | 2.045926 | AGGGAGAACATGCCACGC | 60.046 | 61.111 | 0.00 | 0.00 | 43.31 | 5.34 |
3575 | 3769 | 1.021390 | GTCAGGGAGAACATGCCACG | 61.021 | 60.000 | 0.00 | 0.00 | 43.31 | 4.94 |
3576 | 3770 | 0.678048 | GGTCAGGGAGAACATGCCAC | 60.678 | 60.000 | 0.00 | 0.00 | 43.31 | 5.01 |
3577 | 3771 | 0.842030 | AGGTCAGGGAGAACATGCCA | 60.842 | 55.000 | 0.00 | 0.00 | 43.31 | 4.92 |
3578 | 3772 | 0.393537 | CAGGTCAGGGAGAACATGCC | 60.394 | 60.000 | 0.00 | 0.00 | 40.48 | 4.40 |
3579 | 3773 | 0.393537 | CCAGGTCAGGGAGAACATGC | 60.394 | 60.000 | 0.00 | 0.00 | 35.97 | 4.06 |
3580 | 3774 | 3.869623 | CCAGGTCAGGGAGAACATG | 57.130 | 57.895 | 0.00 | 0.00 | 35.97 | 3.21 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.